Multiple sequence alignment - TraesCS3A01G411200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G411200 | chr3A | 100.000 | 2498 | 0 | 0 | 1 | 2498 | 655508304 | 655505807 | 0.000000e+00 | 4614.0 |
1 | TraesCS3A01G411200 | chr3A | 80.753 | 930 | 127 | 22 | 928 | 1853 | 655232546 | 655231665 | 0.000000e+00 | 678.0 |
2 | TraesCS3A01G411200 | chr3A | 80.809 | 766 | 122 | 10 | 952 | 1712 | 655080928 | 655080183 | 5.990000e-161 | 577.0 |
3 | TraesCS3A01G411200 | chr3A | 80.161 | 620 | 92 | 22 | 1028 | 1639 | 655079396 | 655078800 | 3.820000e-118 | 435.0 |
4 | TraesCS3A01G411200 | chr3A | 88.000 | 325 | 11 | 8 | 1788 | 2084 | 655080059 | 655079735 | 2.360000e-95 | 359.0 |
5 | TraesCS3A01G411200 | chr3A | 96.241 | 133 | 5 | 0 | 2366 | 2498 | 655079736 | 655079604 | 4.180000e-53 | 219.0 |
6 | TraesCS3A01G411200 | chr7A | 98.361 | 915 | 14 | 1 | 1 | 915 | 617024082 | 617024995 | 0.000000e+00 | 1605.0 |
7 | TraesCS3A01G411200 | chr7A | 86.201 | 558 | 66 | 6 | 1 | 557 | 158269615 | 158269068 | 5.950000e-166 | 593.0 |
8 | TraesCS3A01G411200 | chr7B | 94.222 | 900 | 43 | 2 | 25 | 915 | 651399710 | 651398811 | 0.000000e+00 | 1365.0 |
9 | TraesCS3A01G411200 | chr7B | 89.179 | 268 | 25 | 4 | 2090 | 2356 | 290324692 | 290324428 | 5.150000e-87 | 331.0 |
10 | TraesCS3A01G411200 | chr7B | 89.139 | 267 | 26 | 3 | 2089 | 2354 | 737774867 | 737775131 | 1.850000e-86 | 329.0 |
11 | TraesCS3A01G411200 | chr3B | 88.228 | 858 | 61 | 19 | 43 | 880 | 421045773 | 421044936 | 0.000000e+00 | 989.0 |
12 | TraesCS3A01G411200 | chr3B | 83.288 | 736 | 74 | 19 | 911 | 1639 | 684462310 | 684461617 | 1.260000e-177 | 632.0 |
13 | TraesCS3A01G411200 | chr3B | 93.766 | 401 | 24 | 1 | 506 | 906 | 2264540 | 2264939 | 3.560000e-168 | 601.0 |
14 | TraesCS3A01G411200 | chr3B | 80.720 | 778 | 115 | 22 | 952 | 1719 | 684413260 | 684412508 | 7.750000e-160 | 573.0 |
15 | TraesCS3A01G411200 | chr3B | 79.899 | 796 | 124 | 21 | 984 | 1763 | 684268917 | 684268142 | 3.630000e-153 | 551.0 |
16 | TraesCS3A01G411200 | chr3B | 87.080 | 387 | 49 | 1 | 1346 | 1732 | 684457603 | 684457218 | 1.060000e-118 | 436.0 |
17 | TraesCS3A01G411200 | chr3B | 81.728 | 602 | 34 | 19 | 1542 | 2091 | 684322246 | 684321669 | 1.370000e-117 | 433.0 |
18 | TraesCS3A01G411200 | chr3B | 79.768 | 603 | 108 | 7 | 952 | 1551 | 684328247 | 684327656 | 2.300000e-115 | 425.0 |
19 | TraesCS3A01G411200 | chr3B | 89.513 | 267 | 23 | 5 | 2090 | 2354 | 17707715 | 17707978 | 1.430000e-87 | 333.0 |
20 | TraesCS3A01G411200 | chr3B | 89.219 | 269 | 26 | 3 | 2090 | 2357 | 772172470 | 772172736 | 1.430000e-87 | 333.0 |
21 | TraesCS3A01G411200 | chr3B | 89.219 | 269 | 26 | 3 | 2090 | 2357 | 772187218 | 772187484 | 1.430000e-87 | 333.0 |
22 | TraesCS3A01G411200 | chr3B | 89.179 | 268 | 26 | 3 | 2090 | 2356 | 368323062 | 368322797 | 5.150000e-87 | 331.0 |
23 | TraesCS3A01G411200 | chr3B | 86.071 | 280 | 19 | 10 | 1832 | 2091 | 684412295 | 684412016 | 1.460000e-72 | 283.0 |
24 | TraesCS3A01G411200 | chr3B | 84.024 | 169 | 7 | 8 | 2350 | 2498 | 684412021 | 684411853 | 7.200000e-31 | 145.0 |
25 | TraesCS3A01G411200 | chr3B | 87.288 | 118 | 7 | 3 | 2389 | 2498 | 684321392 | 684321275 | 7.250000e-26 | 128.0 |
26 | TraesCS3A01G411200 | chr3B | 95.890 | 73 | 3 | 0 | 1732 | 1804 | 684412366 | 684412294 | 4.360000e-23 | 119.0 |
27 | TraesCS3A01G411200 | chr3B | 94.828 | 58 | 3 | 0 | 2441 | 2498 | 684297123 | 684297066 | 9.510000e-15 | 91.6 |
28 | TraesCS3A01G411200 | chr3D | 87.673 | 795 | 86 | 5 | 938 | 1732 | 519948035 | 519947253 | 0.000000e+00 | 915.0 |
29 | TraesCS3A01G411200 | chr3D | 84.641 | 918 | 94 | 22 | 911 | 1802 | 520291580 | 520292476 | 0.000000e+00 | 870.0 |
30 | TraesCS3A01G411200 | chr3D | 83.209 | 935 | 115 | 21 | 923 | 1853 | 519710344 | 519709448 | 0.000000e+00 | 819.0 |
31 | TraesCS3A01G411200 | chr3D | 80.026 | 766 | 129 | 10 | 957 | 1712 | 519714050 | 519713299 | 1.690000e-151 | 545.0 |
32 | TraesCS3A01G411200 | chr3D | 91.463 | 82 | 7 | 0 | 1853 | 1934 | 519877326 | 519877245 | 2.030000e-21 | 113.0 |
33 | TraesCS3A01G411200 | chr2D | 86.643 | 569 | 67 | 9 | 1 | 565 | 42057441 | 42058004 | 2.730000e-174 | 621.0 |
34 | TraesCS3A01G411200 | chr4B | 86.535 | 557 | 66 | 4 | 1 | 557 | 519383854 | 519384401 | 2.750000e-169 | 604.0 |
35 | TraesCS3A01G411200 | chr4B | 85.458 | 557 | 69 | 7 | 1 | 557 | 105825118 | 105824574 | 1.000000e-158 | 569.0 |
36 | TraesCS3A01G411200 | chr1B | 86.535 | 557 | 62 | 8 | 1 | 557 | 449368757 | 449369300 | 3.560000e-168 | 601.0 |
37 | TraesCS3A01G411200 | chr1B | 91.220 | 410 | 35 | 1 | 506 | 915 | 632525690 | 632525282 | 7.810000e-155 | 556.0 |
38 | TraesCS3A01G411200 | chr1B | 83.575 | 414 | 57 | 7 | 1243 | 1645 | 548300839 | 548301252 | 6.520000e-101 | 377.0 |
39 | TraesCS3A01G411200 | chr1B | 83.373 | 415 | 59 | 5 | 1253 | 1657 | 548391304 | 548391718 | 2.350000e-100 | 375.0 |
40 | TraesCS3A01G411200 | chr4A | 94.801 | 327 | 17 | 0 | 584 | 910 | 720879720 | 720880046 | 6.160000e-141 | 510.0 |
41 | TraesCS3A01G411200 | chr4A | 89.552 | 268 | 25 | 3 | 2090 | 2356 | 163869567 | 163869832 | 1.110000e-88 | 337.0 |
42 | TraesCS3A01G411200 | chr1A | 96.057 | 279 | 10 | 1 | 12 | 289 | 82078637 | 82078359 | 1.050000e-123 | 453.0 |
43 | TraesCS3A01G411200 | chr1A | 83.965 | 343 | 23 | 11 | 288 | 612 | 82078255 | 82077927 | 1.450000e-77 | 300.0 |
44 | TraesCS3A01G411200 | chr4D | 93.688 | 301 | 19 | 0 | 1 | 301 | 247528068 | 247527768 | 3.790000e-123 | 451.0 |
45 | TraesCS3A01G411200 | chr1D | 84.819 | 415 | 53 | 5 | 1253 | 1657 | 407823581 | 407823995 | 2.310000e-110 | 409.0 |
46 | TraesCS3A01G411200 | chr2A | 90.037 | 271 | 21 | 6 | 2086 | 2354 | 575349286 | 575349020 | 1.840000e-91 | 346.0 |
47 | TraesCS3A01G411200 | chr6D | 89.493 | 276 | 23 | 6 | 2090 | 2362 | 254903924 | 254904196 | 6.610000e-91 | 344.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G411200 | chr3A | 655505807 | 655508304 | 2497 | True | 4614.0 | 4614 | 100.00000 | 1 | 2498 | 1 | chr3A.!!$R2 | 2497 |
1 | TraesCS3A01G411200 | chr3A | 655231665 | 655232546 | 881 | True | 678.0 | 678 | 80.75300 | 928 | 1853 | 1 | chr3A.!!$R1 | 925 |
2 | TraesCS3A01G411200 | chr3A | 655078800 | 655080928 | 2128 | True | 397.5 | 577 | 86.30275 | 952 | 2498 | 4 | chr3A.!!$R3 | 1546 |
3 | TraesCS3A01G411200 | chr7A | 617024082 | 617024995 | 913 | False | 1605.0 | 1605 | 98.36100 | 1 | 915 | 1 | chr7A.!!$F1 | 914 |
4 | TraesCS3A01G411200 | chr7A | 158269068 | 158269615 | 547 | True | 593.0 | 593 | 86.20100 | 1 | 557 | 1 | chr7A.!!$R1 | 556 |
5 | TraesCS3A01G411200 | chr7B | 651398811 | 651399710 | 899 | True | 1365.0 | 1365 | 94.22200 | 25 | 915 | 1 | chr7B.!!$R2 | 890 |
6 | TraesCS3A01G411200 | chr3B | 421044936 | 421045773 | 837 | True | 989.0 | 989 | 88.22800 | 43 | 880 | 1 | chr3B.!!$R2 | 837 |
7 | TraesCS3A01G411200 | chr3B | 684461617 | 684462310 | 693 | True | 632.0 | 632 | 83.28800 | 911 | 1639 | 1 | chr3B.!!$R7 | 728 |
8 | TraesCS3A01G411200 | chr3B | 684268142 | 684268917 | 775 | True | 551.0 | 551 | 79.89900 | 984 | 1763 | 1 | chr3B.!!$R3 | 779 |
9 | TraesCS3A01G411200 | chr3B | 684327656 | 684328247 | 591 | True | 425.0 | 425 | 79.76800 | 952 | 1551 | 1 | chr3B.!!$R5 | 599 |
10 | TraesCS3A01G411200 | chr3B | 684321275 | 684322246 | 971 | True | 280.5 | 433 | 84.50800 | 1542 | 2498 | 2 | chr3B.!!$R8 | 956 |
11 | TraesCS3A01G411200 | chr3B | 684411853 | 684413260 | 1407 | True | 280.0 | 573 | 86.67625 | 952 | 2498 | 4 | chr3B.!!$R9 | 1546 |
12 | TraesCS3A01G411200 | chr3D | 519947253 | 519948035 | 782 | True | 915.0 | 915 | 87.67300 | 938 | 1732 | 1 | chr3D.!!$R2 | 794 |
13 | TraesCS3A01G411200 | chr3D | 520291580 | 520292476 | 896 | False | 870.0 | 870 | 84.64100 | 911 | 1802 | 1 | chr3D.!!$F1 | 891 |
14 | TraesCS3A01G411200 | chr3D | 519709448 | 519714050 | 4602 | True | 682.0 | 819 | 81.61750 | 923 | 1853 | 2 | chr3D.!!$R3 | 930 |
15 | TraesCS3A01G411200 | chr2D | 42057441 | 42058004 | 563 | False | 621.0 | 621 | 86.64300 | 1 | 565 | 1 | chr2D.!!$F1 | 564 |
16 | TraesCS3A01G411200 | chr4B | 519383854 | 519384401 | 547 | False | 604.0 | 604 | 86.53500 | 1 | 557 | 1 | chr4B.!!$F1 | 556 |
17 | TraesCS3A01G411200 | chr4B | 105824574 | 105825118 | 544 | True | 569.0 | 569 | 85.45800 | 1 | 557 | 1 | chr4B.!!$R1 | 556 |
18 | TraesCS3A01G411200 | chr1B | 449368757 | 449369300 | 543 | False | 601.0 | 601 | 86.53500 | 1 | 557 | 1 | chr1B.!!$F1 | 556 |
19 | TraesCS3A01G411200 | chr1A | 82077927 | 82078637 | 710 | True | 376.5 | 453 | 90.01100 | 12 | 612 | 2 | chr1A.!!$R1 | 600 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
941 | 1091 | 4.891992 | AGGACTTCGAAATTCCTGAGAA | 57.108 | 40.909 | 21.79 | 0.0 | 38.94 | 2.87 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2330 | 6527 | 0.472471 | TCCTCCGTCCTTGCAAAAGT | 59.528 | 50.0 | 0.0 | 0.0 | 0.0 | 2.66 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
256 | 259 | 5.657745 | TGGGTGTGCATGATGAAATCTAAAT | 59.342 | 36.000 | 0.00 | 0.00 | 45.81 | 1.40 |
941 | 1091 | 4.891992 | AGGACTTCGAAATTCCTGAGAA | 57.108 | 40.909 | 21.79 | 0.00 | 38.94 | 2.87 |
954 | 1104 | 8.829373 | AAATTCCTGAGAATGGCTTAATTAGT | 57.171 | 30.769 | 0.00 | 0.00 | 42.03 | 2.24 |
984 | 1137 | 5.927115 | AGTTCTACGGTCAAATCAAGAGTTC | 59.073 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
986 | 1139 | 5.849510 | TCTACGGTCAAATCAAGAGTTCAA | 58.150 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
987 | 1140 | 6.464222 | TCTACGGTCAAATCAAGAGTTCAAT | 58.536 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1010 | 4903 | 0.319728 | CGAGAGGCCATGTCCATAGG | 59.680 | 60.000 | 5.01 | 0.00 | 0.00 | 2.57 |
1016 | 4909 | 1.686115 | GGCCATGTCCATAGGTTGCTT | 60.686 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
1017 | 4910 | 1.678101 | GCCATGTCCATAGGTTGCTTC | 59.322 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1018 | 4911 | 1.942657 | CCATGTCCATAGGTTGCTTCG | 59.057 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
1030 | 4926 | 1.149361 | TTGCTTCGTCAACGCGTTCT | 61.149 | 50.000 | 23.92 | 0.00 | 39.60 | 3.01 |
1042 | 4938 | 2.629656 | GCGTTCTTGCTGGCCATGT | 61.630 | 57.895 | 5.51 | 0.00 | 0.00 | 3.21 |
1053 | 4949 | 1.935873 | CTGGCCATGTTCTACATCGTG | 59.064 | 52.381 | 5.51 | 0.00 | 36.53 | 4.35 |
1163 | 5059 | 5.394663 | CGTTCTTACTCATCTTCTGGGTCAT | 60.395 | 44.000 | 0.00 | 0.00 | 38.14 | 3.06 |
1177 | 5080 | 2.565391 | TGGGTCATCTTCTTCGCTGTTA | 59.435 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
1363 | 5275 | 1.609061 | CGCAGTTTCTGGACCAGACAT | 60.609 | 52.381 | 24.24 | 9.90 | 40.46 | 3.06 |
1383 | 5295 | 0.941463 | CGAGTCATATGCCCGTGCTC | 60.941 | 60.000 | 0.00 | 0.00 | 38.71 | 4.26 |
1443 | 5355 | 2.108157 | GCGTATGACATCCCGGCA | 59.892 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
1506 | 5418 | 2.986492 | CCTCGGGTAGGTGGAGAAA | 58.014 | 57.895 | 0.00 | 0.00 | 40.94 | 2.52 |
1568 | 5480 | 3.190849 | CCAGCAGTGCATCGACCG | 61.191 | 66.667 | 19.20 | 0.00 | 0.00 | 4.79 |
1648 | 5566 | 1.733526 | GCCCAAATGGTATGACCGC | 59.266 | 57.895 | 0.00 | 0.00 | 42.58 | 5.68 |
1652 | 5574 | 1.337703 | CCAAATGGTATGACCGCATGG | 59.662 | 52.381 | 0.00 | 0.00 | 42.58 | 3.66 |
1667 | 5604 | 0.677731 | CATGGGTGACGCTGGTGATT | 60.678 | 55.000 | 0.31 | 0.00 | 0.00 | 2.57 |
1681 | 5623 | 5.537188 | GCTGGTGATTAGAGATAACTGAGG | 58.463 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
1830 | 5989 | 2.243810 | TGTAACATGGGGAAAACCTGC | 58.756 | 47.619 | 0.00 | 0.00 | 40.03 | 4.85 |
1836 | 5995 | 3.245586 | ACATGGGGAAAACCTGCAATCTA | 60.246 | 43.478 | 0.00 | 0.00 | 40.03 | 1.98 |
1885 | 6050 | 1.276421 | GGCATCTCACCGGCATATACT | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
1981 | 6174 | 5.064198 | CCGTACGTGAATTGTTTGTATGGAT | 59.936 | 40.000 | 15.21 | 0.00 | 42.26 | 3.41 |
2030 | 6223 | 1.141645 | CAGCGTTGCATGCAAAACAT | 58.858 | 45.000 | 33.42 | 17.26 | 40.66 | 2.71 |
2050 | 6247 | 7.408756 | AACATCCTTTGCAGCATTCTAAATA | 57.591 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2091 | 6288 | 7.819900 | AGAAATCTGCCGACCATATTAAGATAC | 59.180 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2092 | 6289 | 6.859112 | ATCTGCCGACCATATTAAGATACT | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
2093 | 6290 | 6.268825 | TCTGCCGACCATATTAAGATACTC | 57.731 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2094 | 6291 | 5.185249 | TCTGCCGACCATATTAAGATACTCC | 59.815 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2095 | 6292 | 4.222145 | TGCCGACCATATTAAGATACTCCC | 59.778 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2096 | 6293 | 4.466726 | GCCGACCATATTAAGATACTCCCT | 59.533 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
2097 | 6294 | 5.046520 | GCCGACCATATTAAGATACTCCCTT | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2098 | 6295 | 6.631962 | CCGACCATATTAAGATACTCCCTTC | 58.368 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2099 | 6296 | 6.323266 | CGACCATATTAAGATACTCCCTTCG | 58.677 | 44.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2100 | 6297 | 6.150641 | CGACCATATTAAGATACTCCCTTCGA | 59.849 | 42.308 | 0.00 | 0.00 | 0.00 | 3.71 |
2101 | 6298 | 7.148052 | CGACCATATTAAGATACTCCCTTCGAT | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 3.59 |
2102 | 6299 | 8.068892 | ACCATATTAAGATACTCCCTTCGATC | 57.931 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
2103 | 6300 | 7.896496 | ACCATATTAAGATACTCCCTTCGATCT | 59.104 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
2104 | 6301 | 8.754080 | CCATATTAAGATACTCCCTTCGATCTT | 58.246 | 37.037 | 0.00 | 0.00 | 40.73 | 2.40 |
2133 | 6330 | 7.841915 | AAATTGTACTTCCAACTTTGTTTGG | 57.158 | 32.000 | 0.00 | 0.00 | 46.64 | 3.28 |
2160 | 6357 | 8.964420 | AAGTCAAATTATTTTATGTGTGACCG | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 4.79 |
2161 | 6358 | 8.106247 | AGTCAAATTATTTTATGTGTGACCGT | 57.894 | 30.769 | 0.00 | 0.00 | 0.00 | 4.83 |
2162 | 6359 | 9.221933 | AGTCAAATTATTTTATGTGTGACCGTA | 57.778 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
2163 | 6360 | 9.997482 | GTCAAATTATTTTATGTGTGACCGTAT | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
2195 | 6392 | 5.520376 | AATAGACCAACATTTATGCCAGC | 57.480 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
2196 | 6393 | 2.806434 | AGACCAACATTTATGCCAGCA | 58.194 | 42.857 | 0.00 | 0.00 | 0.00 | 4.41 |
2197 | 6394 | 3.164268 | AGACCAACATTTATGCCAGCAA | 58.836 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
2198 | 6395 | 3.577848 | AGACCAACATTTATGCCAGCAAA | 59.422 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
2199 | 6396 | 4.223477 | AGACCAACATTTATGCCAGCAAAT | 59.777 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2200 | 6397 | 4.909001 | ACCAACATTTATGCCAGCAAATT | 58.091 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
2201 | 6398 | 6.047511 | ACCAACATTTATGCCAGCAAATTA | 57.952 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2202 | 6399 | 6.108015 | ACCAACATTTATGCCAGCAAATTAG | 58.892 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2203 | 6400 | 6.108015 | CCAACATTTATGCCAGCAAATTAGT | 58.892 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2204 | 6401 | 7.093552 | ACCAACATTTATGCCAGCAAATTAGTA | 60.094 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2205 | 6402 | 7.436080 | CCAACATTTATGCCAGCAAATTAGTAG | 59.564 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2206 | 6403 | 6.507023 | ACATTTATGCCAGCAAATTAGTAGC | 58.493 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2207 | 6404 | 6.096705 | ACATTTATGCCAGCAAATTAGTAGCA | 59.903 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
2208 | 6405 | 6.713762 | TTTATGCCAGCAAATTAGTAGCAT | 57.286 | 33.333 | 0.00 | 0.00 | 41.89 | 3.79 |
2209 | 6406 | 6.713762 | TTATGCCAGCAAATTAGTAGCATT | 57.286 | 33.333 | 0.00 | 0.00 | 39.89 | 3.56 |
2210 | 6407 | 7.815840 | TTATGCCAGCAAATTAGTAGCATTA | 57.184 | 32.000 | 0.00 | 0.00 | 39.89 | 1.90 |
2211 | 6408 | 5.756195 | TGCCAGCAAATTAGTAGCATTAG | 57.244 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
2212 | 6409 | 5.436175 | TGCCAGCAAATTAGTAGCATTAGA | 58.564 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2213 | 6410 | 6.064060 | TGCCAGCAAATTAGTAGCATTAGAT | 58.936 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2214 | 6411 | 6.547141 | TGCCAGCAAATTAGTAGCATTAGATT | 59.453 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2215 | 6412 | 7.080724 | GCCAGCAAATTAGTAGCATTAGATTC | 58.919 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
2216 | 6413 | 7.255242 | GCCAGCAAATTAGTAGCATTAGATTCA | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2217 | 6414 | 8.790718 | CCAGCAAATTAGTAGCATTAGATTCAT | 58.209 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2218 | 6415 | 9.608617 | CAGCAAATTAGTAGCATTAGATTCATG | 57.391 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
2219 | 6416 | 9.565090 | AGCAAATTAGTAGCATTAGATTCATGA | 57.435 | 29.630 | 0.00 | 0.00 | 0.00 | 3.07 |
2257 | 6454 | 9.825109 | TTCGTCATATACCTATTTGATTTCACA | 57.175 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
2258 | 6455 | 9.825109 | TCGTCATATACCTATTTGATTTCACAA | 57.175 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
2266 | 6463 | 8.816640 | ACCTATTTGATTTCACAAACATTCAC | 57.183 | 30.769 | 0.00 | 0.00 | 41.49 | 3.18 |
2267 | 6464 | 8.420222 | ACCTATTTGATTTCACAAACATTCACA | 58.580 | 29.630 | 0.00 | 0.00 | 41.49 | 3.58 |
2268 | 6465 | 9.426837 | CCTATTTGATTTCACAAACATTCACAT | 57.573 | 29.630 | 0.00 | 0.00 | 41.49 | 3.21 |
2276 | 6473 | 9.881529 | ATTTCACAAACATTCACATATTTTTGC | 57.118 | 25.926 | 0.00 | 0.00 | 0.00 | 3.68 |
2277 | 6474 | 8.429493 | TTCACAAACATTCACATATTTTTGCA | 57.571 | 26.923 | 0.00 | 0.00 | 0.00 | 4.08 |
2278 | 6475 | 7.849496 | TCACAAACATTCACATATTTTTGCAC | 58.151 | 30.769 | 0.00 | 0.00 | 0.00 | 4.57 |
2279 | 6476 | 7.493645 | TCACAAACATTCACATATTTTTGCACA | 59.506 | 29.630 | 0.00 | 0.00 | 0.00 | 4.57 |
2280 | 6477 | 8.121086 | CACAAACATTCACATATTTTTGCACAA | 58.879 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
2281 | 6478 | 8.671921 | ACAAACATTCACATATTTTTGCACAAA | 58.328 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2282 | 6479 | 8.945930 | CAAACATTCACATATTTTTGCACAAAC | 58.054 | 29.630 | 0.00 | 0.00 | 0.00 | 2.93 |
2283 | 6480 | 8.436046 | AACATTCACATATTTTTGCACAAACT | 57.564 | 26.923 | 0.00 | 0.00 | 0.00 | 2.66 |
2284 | 6481 | 8.075593 | ACATTCACATATTTTTGCACAAACTC | 57.924 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
2285 | 6482 | 6.746104 | TTCACATATTTTTGCACAAACTCG | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
2286 | 6483 | 5.218885 | TCACATATTTTTGCACAAACTCGG | 58.781 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
2287 | 6484 | 4.981674 | CACATATTTTTGCACAAACTCGGT | 59.018 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
2288 | 6485 | 5.116983 | CACATATTTTTGCACAAACTCGGTC | 59.883 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2289 | 6486 | 3.791973 | ATTTTTGCACAAACTCGGTCA | 57.208 | 38.095 | 0.00 | 0.00 | 0.00 | 4.02 |
2290 | 6487 | 3.577649 | TTTTTGCACAAACTCGGTCAA | 57.422 | 38.095 | 0.00 | 0.00 | 0.00 | 3.18 |
2291 | 6488 | 3.577649 | TTTTGCACAAACTCGGTCAAA | 57.422 | 38.095 | 0.00 | 0.00 | 0.00 | 2.69 |
2292 | 6489 | 2.553079 | TTGCACAAACTCGGTCAAAC | 57.447 | 45.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2293 | 6490 | 1.745232 | TGCACAAACTCGGTCAAACT | 58.255 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2294 | 6491 | 2.088423 | TGCACAAACTCGGTCAAACTT | 58.912 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
2295 | 6492 | 2.490115 | TGCACAAACTCGGTCAAACTTT | 59.510 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
2296 | 6493 | 3.690139 | TGCACAAACTCGGTCAAACTTTA | 59.310 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
2297 | 6494 | 4.156190 | TGCACAAACTCGGTCAAACTTTAA | 59.844 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2298 | 6495 | 5.096849 | GCACAAACTCGGTCAAACTTTAAA | 58.903 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2299 | 6496 | 5.573669 | GCACAAACTCGGTCAAACTTTAAAA | 59.426 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2300 | 6497 | 6.254804 | GCACAAACTCGGTCAAACTTTAAAAT | 59.745 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2301 | 6498 | 7.432838 | GCACAAACTCGGTCAAACTTTAAAATA | 59.567 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2302 | 6499 | 9.291664 | CACAAACTCGGTCAAACTTTAAAATAA | 57.708 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2322 | 6519 | 8.767478 | AAATAATTTGATCCTTCAACAAGCTG | 57.233 | 30.769 | 0.00 | 0.00 | 41.50 | 4.24 |
2323 | 6520 | 4.796038 | ATTTGATCCTTCAACAAGCTGG | 57.204 | 40.909 | 0.00 | 0.00 | 41.50 | 4.85 |
2324 | 6521 | 3.507162 | TTGATCCTTCAACAAGCTGGA | 57.493 | 42.857 | 0.00 | 0.00 | 36.94 | 3.86 |
2325 | 6522 | 3.507162 | TGATCCTTCAACAAGCTGGAA | 57.493 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
2326 | 6523 | 3.415212 | TGATCCTTCAACAAGCTGGAAG | 58.585 | 45.455 | 0.00 | 2.95 | 38.17 | 3.46 |
2327 | 6524 | 3.181440 | TGATCCTTCAACAAGCTGGAAGT | 60.181 | 43.478 | 0.00 | 0.00 | 37.03 | 3.01 |
2328 | 6525 | 4.041567 | TGATCCTTCAACAAGCTGGAAGTA | 59.958 | 41.667 | 0.00 | 0.00 | 37.03 | 2.24 |
2329 | 6526 | 3.740115 | TCCTTCAACAAGCTGGAAGTAC | 58.260 | 45.455 | 0.00 | 0.00 | 37.03 | 2.73 |
2330 | 6527 | 3.135712 | TCCTTCAACAAGCTGGAAGTACA | 59.864 | 43.478 | 0.00 | 0.00 | 37.03 | 2.90 |
2331 | 6528 | 3.251004 | CCTTCAACAAGCTGGAAGTACAC | 59.749 | 47.826 | 0.00 | 0.00 | 37.03 | 2.90 |
2332 | 6529 | 3.838244 | TCAACAAGCTGGAAGTACACT | 57.162 | 42.857 | 0.00 | 0.00 | 35.30 | 3.55 |
2333 | 6530 | 4.150897 | TCAACAAGCTGGAAGTACACTT | 57.849 | 40.909 | 0.00 | 0.00 | 39.23 | 3.16 |
2334 | 6531 | 4.523083 | TCAACAAGCTGGAAGTACACTTT | 58.477 | 39.130 | 0.00 | 0.00 | 36.11 | 2.66 |
2335 | 6532 | 4.947388 | TCAACAAGCTGGAAGTACACTTTT | 59.053 | 37.500 | 0.00 | 0.00 | 36.11 | 2.27 |
2336 | 6533 | 4.900635 | ACAAGCTGGAAGTACACTTTTG | 57.099 | 40.909 | 0.00 | 0.00 | 36.11 | 2.44 |
2337 | 6534 | 3.066760 | ACAAGCTGGAAGTACACTTTTGC | 59.933 | 43.478 | 0.00 | 2.26 | 36.11 | 3.68 |
2338 | 6535 | 2.930950 | AGCTGGAAGTACACTTTTGCA | 58.069 | 42.857 | 13.38 | 0.00 | 36.11 | 4.08 |
2339 | 6536 | 3.287222 | AGCTGGAAGTACACTTTTGCAA | 58.713 | 40.909 | 0.00 | 0.00 | 36.11 | 4.08 |
2340 | 6537 | 3.316308 | AGCTGGAAGTACACTTTTGCAAG | 59.684 | 43.478 | 0.00 | 0.00 | 36.11 | 4.01 |
2341 | 6538 | 3.550842 | GCTGGAAGTACACTTTTGCAAGG | 60.551 | 47.826 | 0.00 | 0.00 | 36.11 | 3.61 |
2342 | 6539 | 3.882888 | CTGGAAGTACACTTTTGCAAGGA | 59.117 | 43.478 | 0.00 | 0.00 | 36.11 | 3.36 |
2343 | 6540 | 3.630312 | TGGAAGTACACTTTTGCAAGGAC | 59.370 | 43.478 | 0.00 | 0.00 | 36.11 | 3.85 |
2344 | 6541 | 3.303791 | GGAAGTACACTTTTGCAAGGACG | 60.304 | 47.826 | 0.00 | 0.00 | 36.11 | 4.79 |
2345 | 6542 | 2.218603 | AGTACACTTTTGCAAGGACGG | 58.781 | 47.619 | 0.00 | 0.00 | 33.82 | 4.79 |
2346 | 6543 | 2.158871 | AGTACACTTTTGCAAGGACGGA | 60.159 | 45.455 | 0.00 | 0.00 | 33.82 | 4.69 |
2347 | 6544 | 1.308998 | ACACTTTTGCAAGGACGGAG | 58.691 | 50.000 | 0.00 | 0.00 | 33.82 | 4.63 |
2348 | 6545 | 0.593128 | CACTTTTGCAAGGACGGAGG | 59.407 | 55.000 | 0.00 | 0.00 | 33.82 | 4.30 |
2349 | 6546 | 0.472471 | ACTTTTGCAAGGACGGAGGA | 59.528 | 50.000 | 0.00 | 0.00 | 33.82 | 3.71 |
2350 | 6547 | 1.133915 | ACTTTTGCAAGGACGGAGGAA | 60.134 | 47.619 | 0.00 | 0.00 | 33.82 | 3.36 |
2351 | 6548 | 1.537202 | CTTTTGCAAGGACGGAGGAAG | 59.463 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
2352 | 6549 | 0.472471 | TTTGCAAGGACGGAGGAAGT | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2353 | 6550 | 1.344065 | TTGCAAGGACGGAGGAAGTA | 58.656 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2439 | 6896 | 1.069378 | CGGTTAGTTGTCTCGCGGTC | 61.069 | 60.000 | 6.13 | 0.00 | 0.00 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
454 | 567 | 5.136828 | TCTTTTAGCTTGGTGGTGATTTGA | 58.863 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
545 | 668 | 4.202367 | GCCTCCTACACAGGTAAGCAATAT | 60.202 | 45.833 | 0.00 | 0.00 | 43.18 | 1.28 |
954 | 1104 | 4.020928 | TGATTTGACCGTAGAACTGGCTAA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
984 | 1137 | 2.205074 | GACATGGCCTCTCGTGTATTG | 58.795 | 52.381 | 3.32 | 0.00 | 37.05 | 1.90 |
986 | 1139 | 0.753262 | GGACATGGCCTCTCGTGTAT | 59.247 | 55.000 | 11.56 | 0.00 | 37.05 | 2.29 |
987 | 1140 | 0.613572 | TGGACATGGCCTCTCGTGTA | 60.614 | 55.000 | 21.02 | 0.00 | 37.05 | 2.90 |
1010 | 4903 | 0.985416 | GAACGCGTTGACGAAGCAAC | 60.985 | 55.000 | 31.89 | 6.74 | 43.53 | 4.17 |
1016 | 4909 | 1.590525 | AGCAAGAACGCGTTGACGA | 60.591 | 52.632 | 31.89 | 0.00 | 43.02 | 4.20 |
1017 | 4910 | 1.437089 | CAGCAAGAACGCGTTGACG | 60.437 | 57.895 | 31.89 | 17.34 | 43.27 | 4.35 |
1018 | 4911 | 1.082756 | CCAGCAAGAACGCGTTGAC | 60.083 | 57.895 | 31.89 | 16.31 | 36.85 | 3.18 |
1030 | 4926 | 2.368439 | GATGTAGAACATGGCCAGCAA | 58.632 | 47.619 | 13.05 | 0.00 | 39.27 | 3.91 |
1042 | 4938 | 1.921243 | CCGATGCACACGATGTAGAA | 58.079 | 50.000 | 15.15 | 0.00 | 0.00 | 2.10 |
1163 | 5059 | 1.269361 | TGCACGTAACAGCGAAGAAGA | 60.269 | 47.619 | 0.00 | 0.00 | 35.59 | 2.87 |
1303 | 5206 | 4.452733 | GCTTCCGTGCCGTAGCCT | 62.453 | 66.667 | 7.32 | 0.00 | 38.69 | 4.58 |
1363 | 5275 | 1.067416 | GCACGGGCATATGACTCGA | 59.933 | 57.895 | 21.51 | 0.00 | 40.72 | 4.04 |
1414 | 5326 | 3.387091 | ATACGCTGTCGCCACCCA | 61.387 | 61.111 | 0.00 | 0.00 | 39.84 | 4.51 |
1443 | 5355 | 1.684734 | ACCCTCCGGTTGCTCGTAT | 60.685 | 57.895 | 0.00 | 0.00 | 40.58 | 3.06 |
1470 | 5382 | 4.498520 | CAGACCGCGCACTCCGAT | 62.499 | 66.667 | 8.75 | 0.00 | 40.02 | 4.18 |
1495 | 5407 | 1.652947 | GTGTCCCCTTTCTCCACCTA | 58.347 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1506 | 5418 | 4.003788 | CGCTTCACCGTGTCCCCT | 62.004 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1539 | 5451 | 0.183492 | ACTGCTGGTGGAACATGTGT | 59.817 | 50.000 | 0.00 | 0.00 | 44.52 | 3.72 |
1648 | 5566 | 0.677731 | AATCACCAGCGTCACCCATG | 60.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1652 | 5574 | 1.476891 | TCTCTAATCACCAGCGTCACC | 59.523 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
1667 | 5604 | 4.797912 | TCTCTGCCCTCAGTTATCTCTA | 57.202 | 45.455 | 0.00 | 0.00 | 41.10 | 2.43 |
1681 | 5623 | 1.795286 | CACGTCTTTGAGTTCTCTGCC | 59.205 | 52.381 | 1.53 | 0.00 | 0.00 | 4.85 |
1729 | 5868 | 1.620819 | GACCAGAGAAGCCTCACTCAA | 59.379 | 52.381 | 0.00 | 0.00 | 41.87 | 3.02 |
1830 | 5989 | 7.036829 | TGCACATCCATGAAACAAATAGATTG | 58.963 | 34.615 | 0.00 | 0.00 | 44.95 | 2.67 |
1836 | 5995 | 4.992319 | CACTTGCACATCCATGAAACAAAT | 59.008 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
1885 | 6050 | 1.200519 | CGGTCAATCCTAGGTTCCCA | 58.799 | 55.000 | 9.08 | 0.00 | 0.00 | 4.37 |
1990 | 6183 | 2.310945 | GGGGCCTTAAGTTACCTCCTTT | 59.689 | 50.000 | 0.84 | 0.00 | 0.00 | 3.11 |
2030 | 6223 | 8.935844 | CGTATATATTTAGAATGCTGCAAAGGA | 58.064 | 33.333 | 6.36 | 0.00 | 0.00 | 3.36 |
2039 | 6236 | 5.051907 | CGGCGACCGTATATATTTAGAATGC | 60.052 | 44.000 | 0.00 | 0.00 | 42.73 | 3.56 |
2120 | 6317 | 6.983474 | ATTTGACTTTCCAAACAAAGTTGG | 57.017 | 33.333 | 0.37 | 0.00 | 44.91 | 3.77 |
2134 | 6331 | 9.405587 | CGGTCACACATAAAATAATTTGACTTT | 57.594 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2135 | 6332 | 8.573035 | ACGGTCACACATAAAATAATTTGACTT | 58.427 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2136 | 6333 | 8.106247 | ACGGTCACACATAAAATAATTTGACT | 57.894 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
2137 | 6334 | 9.997482 | ATACGGTCACACATAAAATAATTTGAC | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2169 | 6366 | 8.792633 | GCTGGCATAAATGTTGGTCTATTATTA | 58.207 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
2170 | 6367 | 7.287466 | TGCTGGCATAAATGTTGGTCTATTATT | 59.713 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2171 | 6368 | 6.777091 | TGCTGGCATAAATGTTGGTCTATTAT | 59.223 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
2172 | 6369 | 6.125719 | TGCTGGCATAAATGTTGGTCTATTA | 58.874 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2173 | 6370 | 4.955450 | TGCTGGCATAAATGTTGGTCTATT | 59.045 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
2174 | 6371 | 4.535781 | TGCTGGCATAAATGTTGGTCTAT | 58.464 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
2175 | 6372 | 3.961849 | TGCTGGCATAAATGTTGGTCTA | 58.038 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
2176 | 6373 | 2.806434 | TGCTGGCATAAATGTTGGTCT | 58.194 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
2177 | 6374 | 3.591196 | TTGCTGGCATAAATGTTGGTC | 57.409 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
2178 | 6375 | 4.556592 | ATTTGCTGGCATAAATGTTGGT | 57.443 | 36.364 | 8.50 | 0.00 | 0.00 | 3.67 |
2179 | 6376 | 6.108015 | ACTAATTTGCTGGCATAAATGTTGG | 58.892 | 36.000 | 9.67 | 3.07 | 0.00 | 3.77 |
2180 | 6377 | 7.043192 | GCTACTAATTTGCTGGCATAAATGTTG | 60.043 | 37.037 | 9.67 | 7.35 | 0.00 | 3.33 |
2181 | 6378 | 6.980397 | GCTACTAATTTGCTGGCATAAATGTT | 59.020 | 34.615 | 9.67 | 1.42 | 0.00 | 2.71 |
2182 | 6379 | 6.096705 | TGCTACTAATTTGCTGGCATAAATGT | 59.903 | 34.615 | 9.67 | 7.61 | 0.00 | 2.71 |
2183 | 6380 | 6.506147 | TGCTACTAATTTGCTGGCATAAATG | 58.494 | 36.000 | 9.67 | 3.24 | 0.00 | 2.32 |
2184 | 6381 | 6.713762 | TGCTACTAATTTGCTGGCATAAAT | 57.286 | 33.333 | 0.00 | 4.57 | 0.00 | 1.40 |
2185 | 6382 | 6.713762 | ATGCTACTAATTTGCTGGCATAAA | 57.286 | 33.333 | 10.92 | 0.00 | 37.20 | 1.40 |
2186 | 6383 | 6.713762 | AATGCTACTAATTTGCTGGCATAA | 57.286 | 33.333 | 12.23 | 0.00 | 37.85 | 1.90 |
2187 | 6384 | 7.223584 | TCTAATGCTACTAATTTGCTGGCATA | 58.776 | 34.615 | 12.23 | 0.00 | 37.85 | 3.14 |
2188 | 6385 | 6.064060 | TCTAATGCTACTAATTTGCTGGCAT | 58.936 | 36.000 | 0.00 | 8.22 | 40.04 | 4.40 |
2189 | 6386 | 5.436175 | TCTAATGCTACTAATTTGCTGGCA | 58.564 | 37.500 | 0.00 | 0.00 | 0.00 | 4.92 |
2190 | 6387 | 6.566197 | ATCTAATGCTACTAATTTGCTGGC | 57.434 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
2191 | 6388 | 8.158169 | TGAATCTAATGCTACTAATTTGCTGG | 57.842 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
2192 | 6389 | 9.608617 | CATGAATCTAATGCTACTAATTTGCTG | 57.391 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
2193 | 6390 | 9.565090 | TCATGAATCTAATGCTACTAATTTGCT | 57.435 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2231 | 6428 | 9.825109 | TGTGAAATCAAATAGGTATATGACGAA | 57.175 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
2232 | 6429 | 9.825109 | TTGTGAAATCAAATAGGTATATGACGA | 57.175 | 29.630 | 0.00 | 0.00 | 0.00 | 4.20 |
2240 | 6437 | 9.906660 | GTGAATGTTTGTGAAATCAAATAGGTA | 57.093 | 29.630 | 0.00 | 0.00 | 39.09 | 3.08 |
2241 | 6438 | 8.420222 | TGTGAATGTTTGTGAAATCAAATAGGT | 58.580 | 29.630 | 0.00 | 0.00 | 39.09 | 3.08 |
2242 | 6439 | 8.815141 | TGTGAATGTTTGTGAAATCAAATAGG | 57.185 | 30.769 | 0.00 | 0.00 | 39.09 | 2.57 |
2250 | 6447 | 9.881529 | GCAAAAATATGTGAATGTTTGTGAAAT | 57.118 | 25.926 | 3.19 | 0.00 | 36.72 | 2.17 |
2251 | 6448 | 8.886719 | TGCAAAAATATGTGAATGTTTGTGAAA | 58.113 | 25.926 | 3.19 | 0.00 | 36.72 | 2.69 |
2252 | 6449 | 8.333908 | GTGCAAAAATATGTGAATGTTTGTGAA | 58.666 | 29.630 | 0.00 | 0.00 | 36.72 | 3.18 |
2253 | 6450 | 7.493645 | TGTGCAAAAATATGTGAATGTTTGTGA | 59.506 | 29.630 | 0.00 | 0.00 | 36.72 | 3.58 |
2254 | 6451 | 7.628235 | TGTGCAAAAATATGTGAATGTTTGTG | 58.372 | 30.769 | 0.00 | 0.00 | 36.72 | 3.33 |
2255 | 6452 | 7.783090 | TGTGCAAAAATATGTGAATGTTTGT | 57.217 | 28.000 | 0.00 | 0.00 | 36.72 | 2.83 |
2256 | 6453 | 8.945930 | GTTTGTGCAAAAATATGTGAATGTTTG | 58.054 | 29.630 | 5.11 | 0.00 | 37.20 | 2.93 |
2257 | 6454 | 8.891720 | AGTTTGTGCAAAAATATGTGAATGTTT | 58.108 | 25.926 | 5.11 | 0.00 | 31.33 | 2.83 |
2258 | 6455 | 8.436046 | AGTTTGTGCAAAAATATGTGAATGTT | 57.564 | 26.923 | 5.11 | 0.00 | 31.33 | 2.71 |
2259 | 6456 | 7.096106 | CGAGTTTGTGCAAAAATATGTGAATGT | 60.096 | 33.333 | 5.11 | 0.00 | 31.33 | 2.71 |
2260 | 6457 | 7.221970 | CGAGTTTGTGCAAAAATATGTGAATG | 58.778 | 34.615 | 5.11 | 0.00 | 31.33 | 2.67 |
2261 | 6458 | 6.365789 | CCGAGTTTGTGCAAAAATATGTGAAT | 59.634 | 34.615 | 5.11 | 0.00 | 31.33 | 2.57 |
2262 | 6459 | 5.689514 | CCGAGTTTGTGCAAAAATATGTGAA | 59.310 | 36.000 | 5.11 | 0.00 | 31.33 | 3.18 |
2263 | 6460 | 5.218885 | CCGAGTTTGTGCAAAAATATGTGA | 58.781 | 37.500 | 5.11 | 0.00 | 31.33 | 3.58 |
2264 | 6461 | 4.981674 | ACCGAGTTTGTGCAAAAATATGTG | 59.018 | 37.500 | 5.11 | 0.00 | 31.33 | 3.21 |
2265 | 6462 | 5.195001 | ACCGAGTTTGTGCAAAAATATGT | 57.805 | 34.783 | 5.11 | 0.00 | 31.33 | 2.29 |
2266 | 6463 | 5.218885 | TGACCGAGTTTGTGCAAAAATATG | 58.781 | 37.500 | 5.11 | 0.00 | 31.33 | 1.78 |
2267 | 6464 | 5.446143 | TGACCGAGTTTGTGCAAAAATAT | 57.554 | 34.783 | 5.11 | 0.00 | 31.33 | 1.28 |
2268 | 6465 | 4.902443 | TGACCGAGTTTGTGCAAAAATA | 57.098 | 36.364 | 5.11 | 0.00 | 31.33 | 1.40 |
2269 | 6466 | 3.791973 | TGACCGAGTTTGTGCAAAAAT | 57.208 | 38.095 | 5.11 | 0.00 | 31.33 | 1.82 |
2270 | 6467 | 3.577649 | TTGACCGAGTTTGTGCAAAAA | 57.422 | 38.095 | 0.00 | 0.00 | 31.33 | 1.94 |
2271 | 6468 | 3.057174 | AGTTTGACCGAGTTTGTGCAAAA | 60.057 | 39.130 | 0.00 | 0.00 | 31.33 | 2.44 |
2272 | 6469 | 2.490115 | AGTTTGACCGAGTTTGTGCAAA | 59.510 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
2273 | 6470 | 2.088423 | AGTTTGACCGAGTTTGTGCAA | 58.912 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
2274 | 6471 | 1.745232 | AGTTTGACCGAGTTTGTGCA | 58.255 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2275 | 6472 | 2.844122 | AAGTTTGACCGAGTTTGTGC | 57.156 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2276 | 6473 | 7.749539 | ATTTTAAAGTTTGACCGAGTTTGTG | 57.250 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2296 | 6493 | 9.211485 | CAGCTTGTTGAAGGATCAAATTATTTT | 57.789 | 29.630 | 0.00 | 0.00 | 46.66 | 1.82 |
2297 | 6494 | 7.820872 | CCAGCTTGTTGAAGGATCAAATTATTT | 59.179 | 33.333 | 0.00 | 0.00 | 46.66 | 1.40 |
2298 | 6495 | 7.178983 | TCCAGCTTGTTGAAGGATCAAATTATT | 59.821 | 33.333 | 0.00 | 0.00 | 46.66 | 1.40 |
2299 | 6496 | 6.664816 | TCCAGCTTGTTGAAGGATCAAATTAT | 59.335 | 34.615 | 0.00 | 0.00 | 46.66 | 1.28 |
2300 | 6497 | 6.009589 | TCCAGCTTGTTGAAGGATCAAATTA | 58.990 | 36.000 | 0.00 | 0.00 | 46.66 | 1.40 |
2301 | 6498 | 4.834496 | TCCAGCTTGTTGAAGGATCAAATT | 59.166 | 37.500 | 0.00 | 0.00 | 46.66 | 1.82 |
2302 | 6499 | 4.410099 | TCCAGCTTGTTGAAGGATCAAAT | 58.590 | 39.130 | 0.00 | 0.00 | 46.66 | 2.32 |
2303 | 6500 | 3.831323 | TCCAGCTTGTTGAAGGATCAAA | 58.169 | 40.909 | 0.00 | 0.00 | 46.66 | 2.69 |
2304 | 6501 | 3.507162 | TCCAGCTTGTTGAAGGATCAA | 57.493 | 42.857 | 0.00 | 0.00 | 43.18 | 2.57 |
2305 | 6502 | 3.181440 | ACTTCCAGCTTGTTGAAGGATCA | 60.181 | 43.478 | 13.56 | 0.00 | 39.79 | 2.92 |
2306 | 6503 | 3.416156 | ACTTCCAGCTTGTTGAAGGATC | 58.584 | 45.455 | 13.56 | 0.00 | 39.79 | 3.36 |
2307 | 6504 | 3.515602 | ACTTCCAGCTTGTTGAAGGAT | 57.484 | 42.857 | 13.56 | 0.00 | 39.79 | 3.24 |
2308 | 6505 | 3.135712 | TGTACTTCCAGCTTGTTGAAGGA | 59.864 | 43.478 | 13.56 | 5.36 | 39.79 | 3.36 |
2309 | 6506 | 3.251004 | GTGTACTTCCAGCTTGTTGAAGG | 59.749 | 47.826 | 13.56 | 0.00 | 39.79 | 3.46 |
2310 | 6507 | 4.130118 | AGTGTACTTCCAGCTTGTTGAAG | 58.870 | 43.478 | 9.39 | 9.39 | 40.96 | 3.02 |
2311 | 6508 | 4.150897 | AGTGTACTTCCAGCTTGTTGAA | 57.849 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2312 | 6509 | 3.838244 | AGTGTACTTCCAGCTTGTTGA | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
2313 | 6510 | 4.900635 | AAAGTGTACTTCCAGCTTGTTG | 57.099 | 40.909 | 0.00 | 0.00 | 34.61 | 3.33 |
2314 | 6511 | 4.440112 | GCAAAAGTGTACTTCCAGCTTGTT | 60.440 | 41.667 | 0.00 | 0.00 | 34.61 | 2.83 |
2315 | 6512 | 3.066760 | GCAAAAGTGTACTTCCAGCTTGT | 59.933 | 43.478 | 0.00 | 0.00 | 34.61 | 3.16 |
2316 | 6513 | 3.066621 | TGCAAAAGTGTACTTCCAGCTTG | 59.933 | 43.478 | 13.39 | 8.65 | 34.61 | 4.01 |
2317 | 6514 | 3.287222 | TGCAAAAGTGTACTTCCAGCTT | 58.713 | 40.909 | 13.39 | 0.00 | 34.61 | 3.74 |
2318 | 6515 | 2.930950 | TGCAAAAGTGTACTTCCAGCT | 58.069 | 42.857 | 13.39 | 0.00 | 34.61 | 4.24 |
2319 | 6516 | 3.550842 | CCTTGCAAAAGTGTACTTCCAGC | 60.551 | 47.826 | 0.00 | 3.93 | 34.61 | 4.85 |
2320 | 6517 | 3.882888 | TCCTTGCAAAAGTGTACTTCCAG | 59.117 | 43.478 | 0.00 | 0.00 | 34.61 | 3.86 |
2321 | 6518 | 3.630312 | GTCCTTGCAAAAGTGTACTTCCA | 59.370 | 43.478 | 0.00 | 0.00 | 34.61 | 3.53 |
2322 | 6519 | 3.303791 | CGTCCTTGCAAAAGTGTACTTCC | 60.304 | 47.826 | 0.00 | 0.00 | 34.61 | 3.46 |
2323 | 6520 | 3.303791 | CCGTCCTTGCAAAAGTGTACTTC | 60.304 | 47.826 | 0.00 | 0.00 | 34.61 | 3.01 |
2324 | 6521 | 2.616842 | CCGTCCTTGCAAAAGTGTACTT | 59.383 | 45.455 | 0.00 | 0.00 | 37.91 | 2.24 |
2325 | 6522 | 2.158871 | TCCGTCCTTGCAAAAGTGTACT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
2326 | 6523 | 2.215196 | TCCGTCCTTGCAAAAGTGTAC | 58.785 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
2327 | 6524 | 2.489971 | CTCCGTCCTTGCAAAAGTGTA | 58.510 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
2328 | 6525 | 1.308998 | CTCCGTCCTTGCAAAAGTGT | 58.691 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2329 | 6526 | 0.593128 | CCTCCGTCCTTGCAAAAGTG | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2330 | 6527 | 0.472471 | TCCTCCGTCCTTGCAAAAGT | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2331 | 6528 | 1.537202 | CTTCCTCCGTCCTTGCAAAAG | 59.463 | 52.381 | 0.00 | 0.00 | 0.00 | 2.27 |
2332 | 6529 | 1.133915 | ACTTCCTCCGTCCTTGCAAAA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
2333 | 6530 | 0.472471 | ACTTCCTCCGTCCTTGCAAA | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2334 | 6531 | 1.344065 | TACTTCCTCCGTCCTTGCAA | 58.656 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2335 | 6532 | 1.207089 | CATACTTCCTCCGTCCTTGCA | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 4.08 |
2336 | 6533 | 1.207329 | ACATACTTCCTCCGTCCTTGC | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
2337 | 6534 | 4.939052 | ATACATACTTCCTCCGTCCTTG | 57.061 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
2338 | 6535 | 5.952347 | AAATACATACTTCCTCCGTCCTT | 57.048 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2339 | 6536 | 5.895534 | TGTAAATACATACTTCCTCCGTCCT | 59.104 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2340 | 6537 | 6.152932 | TGTAAATACATACTTCCTCCGTCC | 57.847 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
2341 | 6538 | 8.658499 | ATTTGTAAATACATACTTCCTCCGTC | 57.342 | 34.615 | 0.00 | 0.00 | 35.89 | 4.79 |
2439 | 6896 | 0.918983 | TTGAGCCAACCATAGGAGGG | 59.081 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.