Multiple sequence alignment - TraesCS3A01G410700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G410700 chr3A 100.000 4626 0 0 1 4626 654780986 654785611 0.000000e+00 8543.0
1 TraesCS3A01G410700 chr3A 87.194 1429 123 22 2375 3795 655085143 655086519 0.000000e+00 1570.0
2 TraesCS3A01G410700 chr3A 78.197 1564 259 52 2352 3895 654568658 654570159 0.000000e+00 924.0
3 TraesCS3A01G410700 chr3A 87.137 723 75 9 1775 2494 655083676 655084383 0.000000e+00 804.0
4 TraesCS3A01G410700 chr3A 82.021 762 63 30 871 1593 655082941 655083667 8.630000e-162 580.0
5 TraesCS3A01G410700 chr3A 83.629 507 61 13 1085 1587 654357713 654358201 1.520000e-124 457.0
6 TraesCS3A01G410700 chr3A 76.207 891 153 33 2515 3391 654383090 654383935 2.570000e-112 416.0
7 TraesCS3A01G410700 chr3A 90.645 310 25 4 1091 1398 654382607 654382914 4.310000e-110 409.0
8 TraesCS3A01G410700 chr3A 80.077 261 39 10 4145 4398 655087678 655087932 1.020000e-41 182.0
9 TraesCS3A01G410700 chr3A 78.125 288 42 10 586 855 623615008 623614724 3.700000e-36 163.0
10 TraesCS3A01G410700 chr3A 93.506 77 5 0 2296 2372 655084382 655084458 1.050000e-21 115.0
11 TraesCS3A01G410700 chr3A 76.389 144 31 3 705 846 725364386 725364528 1.790000e-09 75.0
12 TraesCS3A01G410700 chr3A 100.000 28 0 0 1869 1896 655084434 655084461 8.000000e-03 52.8
13 TraesCS3A01G410700 chr3D 94.089 3231 138 31 871 4075 519681917 519685120 0.000000e+00 4859.0
14 TraesCS3A01G410700 chr3D 92.639 557 21 5 4073 4626 519685197 519685736 0.000000e+00 784.0
15 TraesCS3A01G410700 chr3D 77.358 901 145 31 2512 3398 519353530 519354385 3.240000e-131 479.0
16 TraesCS3A01G410700 chr3D 91.883 308 24 1 1096 1402 519333601 519333908 3.310000e-116 429.0
17 TraesCS3A01G410700 chr3D 85.000 280 28 4 1 279 519678624 519678890 5.900000e-69 272.0
18 TraesCS3A01G410700 chr3D 77.740 292 48 5 574 849 488121201 488120911 3.700000e-36 163.0
19 TraesCS3A01G410700 chr3D 76.190 273 49 5 575 831 291756910 291757182 3.760000e-26 130.0
20 TraesCS3A01G410700 chr3D 87.736 106 9 3 3732 3835 519878279 519878382 2.260000e-23 121.0
21 TraesCS3A01G410700 chr3B 94.891 1507 44 9 2570 4075 684266338 684267812 0.000000e+00 2326.0
22 TraesCS3A01G410700 chr3B 80.634 1389 207 36 2340 3696 684249696 684251054 0.000000e+00 1018.0
23 TraesCS3A01G410700 chr3B 91.794 719 51 4 871 1586 684264977 684265690 0.000000e+00 994.0
24 TraesCS3A01G410700 chr3B 89.530 659 37 17 1627 2265 684265677 684266323 0.000000e+00 806.0
25 TraesCS3A01G410700 chr3B 89.375 480 29 18 946 1422 684248558 684249018 6.670000e-163 584.0
26 TraesCS3A01G410700 chr3B 88.235 476 42 9 3419 3883 684613818 684614290 1.450000e-154 556.0
27 TraesCS3A01G410700 chr3B 78.381 902 144 32 2512 3398 684040757 684041622 5.270000e-149 538.0
28 TraesCS3A01G410700 chr3B 78.610 748 116 22 2662 3398 683759260 683759974 5.460000e-124 455.0
29 TraesCS3A01G410700 chr3B 80.421 618 97 11 2784 3398 684096380 684096976 2.540000e-122 449.0
30 TraesCS3A01G410700 chr3B 91.290 310 23 4 1091 1398 683758422 683758729 1.990000e-113 420.0
31 TraesCS3A01G410700 chr3B 85.075 402 49 6 1122 1521 683678768 683679160 2.590000e-107 399.0
32 TraesCS3A01G410700 chr3B 80.117 171 24 9 351 516 372894048 372894213 8.130000e-23 119.0
33 TraesCS3A01G410700 chr3B 96.875 64 2 0 3534 3597 684389939 684390002 1.760000e-19 108.0
34 TraesCS3A01G410700 chrUn 81.702 235 38 5 284 515 12709677 12709909 1.700000e-44 191.0
35 TraesCS3A01G410700 chrUn 82.558 172 26 4 295 465 108385409 108385577 1.040000e-31 148.0
36 TraesCS3A01G410700 chr1A 78.498 293 44 7 574 849 70900605 70900315 1.710000e-39 174.0
37 TraesCS3A01G410700 chr1A 75.000 308 57 10 575 865 70914262 70914566 1.750000e-24 124.0
38 TraesCS3A01G410700 chr1A 74.913 287 53 8 575 844 333510053 333510337 3.780000e-21 113.0
39 TraesCS3A01G410700 chr2B 81.304 230 27 4 571 784 650786398 650786627 6.150000e-39 172.0
40 TraesCS3A01G410700 chr2B 79.535 215 39 5 574 785 706799789 706800001 1.040000e-31 148.0
41 TraesCS3A01G410700 chr2B 75.203 246 41 10 625 853 601174957 601175199 1.060000e-16 99.0
42 TraesCS3A01G410700 chr2B 91.111 45 4 0 327 371 247870179 247870135 1.390000e-05 62.1
43 TraesCS3A01G410700 chr7D 78.472 288 43 6 575 846 73143483 73143767 2.210000e-38 171.0
44 TraesCS3A01G410700 chr7D 89.431 123 12 1 573 694 43424955 43425077 2.230000e-33 154.0
45 TraesCS3A01G410700 chr7D 87.407 135 16 1 574 707 560703065 560703199 2.230000e-33 154.0
46 TraesCS3A01G410700 chr5A 84.277 159 19 5 284 439 670500895 670501050 2.880000e-32 150.0
47 TraesCS3A01G410700 chr5B 77.289 273 46 6 575 831 491877909 491877637 3.730000e-31 147.0
48 TraesCS3A01G410700 chr7B 86.029 136 16 3 574 707 729233023 729232889 4.820000e-30 143.0
49 TraesCS3A01G410700 chr7B 79.452 146 23 6 279 420 750437018 750437160 3.810000e-16 97.1
50 TraesCS3A01G410700 chr4B 80.749 187 27 5 283 465 619437991 619437810 2.240000e-28 137.0
51 TraesCS3A01G410700 chr6D 81.437 167 25 5 575 739 386444304 386444466 1.040000e-26 132.0
52 TraesCS3A01G410700 chr6B 79.191 173 27 9 298 464 633551082 633550913 1.360000e-20 111.0
53 TraesCS3A01G410700 chr6B 82.796 93 14 2 284 375 670610411 670610320 1.070000e-11 82.4
54 TraesCS3A01G410700 chr4A 80.357 112 22 0 720 831 246807806 246807695 8.250000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G410700 chr3A 654780986 654785611 4625 False 8543.000000 8543 100.000000 1 4626 1 chr3A.!!$F3 4625
1 TraesCS3A01G410700 chr3A 654568658 654570159 1501 False 924.000000 924 78.197000 2352 3895 1 chr3A.!!$F2 1543
2 TraesCS3A01G410700 chr3A 655082941 655087932 4991 False 550.633333 1570 88.322500 871 4398 6 chr3A.!!$F6 3527
3 TraesCS3A01G410700 chr3A 654382607 654383935 1328 False 412.500000 416 83.426000 1091 3391 2 chr3A.!!$F5 2300
4 TraesCS3A01G410700 chr3D 519678624 519685736 7112 False 1971.666667 4859 90.576000 1 4626 3 chr3D.!!$F5 4625
5 TraesCS3A01G410700 chr3D 519353530 519354385 855 False 479.000000 479 77.358000 2512 3398 1 chr3D.!!$F3 886
6 TraesCS3A01G410700 chr3B 684264977 684267812 2835 False 1375.333333 2326 92.071667 871 4075 3 chr3B.!!$F9 3204
7 TraesCS3A01G410700 chr3B 684248558 684251054 2496 False 801.000000 1018 85.004500 946 3696 2 chr3B.!!$F8 2750
8 TraesCS3A01G410700 chr3B 684040757 684041622 865 False 538.000000 538 78.381000 2512 3398 1 chr3B.!!$F3 886
9 TraesCS3A01G410700 chr3B 684096380 684096976 596 False 449.000000 449 80.421000 2784 3398 1 chr3B.!!$F4 614
10 TraesCS3A01G410700 chr3B 683758422 683759974 1552 False 437.500000 455 84.950000 1091 3398 2 chr3B.!!$F7 2307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 861 0.039180 TGTAGGCCCAGTCTCTCGAA 59.961 55.000 0.0 0.0 0.0 3.71 F
982 3569 0.323087 CTTCCCCAAACCCTAACCCG 60.323 60.000 0.0 0.0 0.0 5.28 F
1936 4975 0.379669 GGAATGCTGAGTTGCCATCG 59.620 55.000 0.0 0.0 0.0 3.84 F
1940 4979 1.291184 TGCTGAGTTGCCATCGAACG 61.291 55.000 0.0 0.0 0.0 3.95 F
3118 7099 2.105134 TGGTGTCTTTGGTGTTATCGGT 59.895 45.455 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2549 6477 0.243095 GCCAGAAGCCTGAAAAGCTG 59.757 55.000 0.00 0.00 43.02 4.24 R
2915 6896 2.869801 ACCGATAAATATGCCGTGTGTG 59.130 45.455 0.00 0.00 0.00 3.82 R
3118 7099 0.038021 TCAGCTGTGGGCATGCTTTA 59.962 50.000 18.92 0.99 44.79 1.85 R
3304 7285 0.399949 TGTCAAGGGACTCCAGGTGT 60.400 55.000 0.00 0.00 44.61 4.16 R
4417 9420 0.757188 TTGTTCATGTTTGCGGGGGT 60.757 50.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.504863 CTTTTGGCATGATTCGTCTTGG 58.495 45.455 0.00 0.00 0.00 3.61
63 64 1.620323 GTGCCAGGGCTTTCTCATTTT 59.380 47.619 12.19 0.00 42.51 1.82
109 110 2.986728 AGAGGTGTAGGACAACCCAAAT 59.013 45.455 0.00 0.00 36.16 2.32
110 111 3.081804 GAGGTGTAGGACAACCCAAATG 58.918 50.000 0.00 0.00 36.16 2.32
113 114 4.291249 AGGTGTAGGACAACCCAAATGTAT 59.709 41.667 0.00 0.00 36.16 2.29
116 117 2.999331 AGGACAACCCAAATGTATCGG 58.001 47.619 0.00 0.00 37.41 4.18
117 118 2.574369 AGGACAACCCAAATGTATCGGA 59.426 45.455 0.00 0.00 37.41 4.55
125 126 3.533547 CCAAATGTATCGGACCGGTTTA 58.466 45.455 15.25 0.00 0.00 2.01
128 129 5.448089 CCAAATGTATCGGACCGGTTTAAAG 60.448 44.000 15.25 0.00 0.00 1.85
144 145 0.863956 AAAGGGGGACAATTGGGTCA 59.136 50.000 10.83 0.00 39.59 4.02
158 159 4.764679 TTGGGTCACATTTTCAAGATCG 57.235 40.909 0.00 0.00 0.00 3.69
159 160 3.081061 TGGGTCACATTTTCAAGATCGG 58.919 45.455 0.00 0.00 0.00 4.18
160 161 3.081804 GGGTCACATTTTCAAGATCGGT 58.918 45.455 0.00 0.00 0.00 4.69
161 162 3.127030 GGGTCACATTTTCAAGATCGGTC 59.873 47.826 0.00 0.00 0.00 4.79
162 163 3.751175 GGTCACATTTTCAAGATCGGTCA 59.249 43.478 0.00 0.00 0.00 4.02
163 164 4.378459 GGTCACATTTTCAAGATCGGTCAC 60.378 45.833 0.00 0.00 0.00 3.67
164 165 4.452455 GTCACATTTTCAAGATCGGTCACT 59.548 41.667 0.00 0.00 0.00 3.41
165 166 4.452114 TCACATTTTCAAGATCGGTCACTG 59.548 41.667 0.00 0.00 0.00 3.66
166 167 4.452114 CACATTTTCAAGATCGGTCACTGA 59.548 41.667 0.00 0.00 0.00 3.41
167 168 5.122869 CACATTTTCAAGATCGGTCACTGAT 59.877 40.000 0.00 0.00 0.00 2.90
168 169 5.352569 ACATTTTCAAGATCGGTCACTGATC 59.647 40.000 17.84 17.84 42.04 2.92
172 173 2.593346 AGATCGGTCACTGATCAAGC 57.407 50.000 25.60 2.37 43.73 4.01
220 221 0.629596 TGAGGGGTCCGTCTACAGAT 59.370 55.000 10.51 0.00 0.00 2.90
224 225 0.386113 GGGTCCGTCTACAGATGCTC 59.614 60.000 0.00 0.00 0.00 4.26
230 231 2.952978 CCGTCTACAGATGCTCTAAGGT 59.047 50.000 0.00 0.00 0.00 3.50
238 239 4.219115 CAGATGCTCTAAGGTAGGGAGAA 58.781 47.826 0.00 0.00 0.00 2.87
240 241 4.898861 AGATGCTCTAAGGTAGGGAGAAAG 59.101 45.833 0.00 0.00 0.00 2.62
244 245 5.046520 TGCTCTAAGGTAGGGAGAAAGAAAC 60.047 44.000 0.00 0.00 0.00 2.78
245 246 5.188163 GCTCTAAGGTAGGGAGAAAGAAACT 59.812 44.000 0.00 0.00 0.00 2.66
246 247 6.628621 GCTCTAAGGTAGGGAGAAAGAAACTC 60.629 46.154 0.00 0.00 0.00 3.01
261 262 5.855740 AGAAACTCCATGTACTACTAGGC 57.144 43.478 0.00 0.00 0.00 3.93
262 263 5.269991 AGAAACTCCATGTACTACTAGGCA 58.730 41.667 0.00 0.00 0.00 4.75
272 273 6.912951 TGTACTACTAGGCAAACTTCTTCT 57.087 37.500 0.00 0.00 0.00 2.85
333 334 9.936759 TGTGTATACATATTTTGAGAAGTCACA 57.063 29.630 9.18 0.00 30.10 3.58
340 341 9.337396 ACATATTTTGAGAAGTCACACTTTACA 57.663 29.630 0.00 0.00 38.80 2.41
343 344 8.911247 ATTTTGAGAAGTCACACTTTACAAAC 57.089 30.769 15.11 0.00 38.80 2.93
344 345 7.681939 TTTGAGAAGTCACACTTTACAAACT 57.318 32.000 13.11 0.00 38.80 2.66
345 346 7.681939 TTGAGAAGTCACACTTTACAAACTT 57.318 32.000 6.69 0.00 38.80 2.66
346 347 7.681939 TGAGAAGTCACACTTTACAAACTTT 57.318 32.000 0.00 0.00 38.80 2.66
347 348 7.526608 TGAGAAGTCACACTTTACAAACTTTG 58.473 34.615 0.00 0.00 38.80 2.77
348 349 7.389330 TGAGAAGTCACACTTTACAAACTTTGA 59.611 33.333 8.55 0.00 38.80 2.69
349 350 7.527457 AGAAGTCACACTTTACAAACTTTGAC 58.473 34.615 8.55 0.00 38.80 3.18
350 351 7.390718 AGAAGTCACACTTTACAAACTTTGACT 59.609 33.333 8.55 0.00 43.26 3.41
351 352 8.556213 AAGTCACACTTTACAAACTTTGACTA 57.444 30.769 8.55 0.00 41.16 2.59
352 353 8.556213 AGTCACACTTTACAAACTTTGACTAA 57.444 30.769 8.55 0.00 40.43 2.24
353 354 8.665685 AGTCACACTTTACAAACTTTGACTAAG 58.334 33.333 8.55 9.86 40.43 2.18
449 450 6.624352 ACTTGTATATGTTTGGCATGCTAG 57.376 37.500 18.92 0.00 38.47 3.42
458 556 7.822161 ATGTTTGGCATGCTAGATGTAAATA 57.178 32.000 18.92 0.02 36.26 1.40
488 586 9.638239 TTCACCAATAATTTGATTAAAGCTGAC 57.362 29.630 0.00 0.00 34.60 3.51
494 592 5.803020 ATTTGATTAAAGCTGACGAGGTC 57.197 39.130 0.00 0.00 0.00 3.85
498 596 4.160439 TGATTAAAGCTGACGAGGTCTGAT 59.840 41.667 6.80 0.00 34.21 2.90
501 599 3.409026 AAGCTGACGAGGTCTGATTTT 57.591 42.857 6.80 0.00 36.93 1.82
502 600 3.409026 AGCTGACGAGGTCTGATTTTT 57.591 42.857 6.80 0.00 34.21 1.94
508 606 6.578919 GCTGACGAGGTCTGATTTTTAAAAAG 59.421 38.462 17.72 5.76 34.21 2.27
509 607 7.519970 GCTGACGAGGTCTGATTTTTAAAAAGA 60.520 37.037 17.72 7.92 34.21 2.52
511 609 8.846211 TGACGAGGTCTGATTTTTAAAAAGATT 58.154 29.630 17.72 2.52 33.15 2.40
532 630 9.440761 AAGATTATACTCCTTAACCAGTGATCT 57.559 33.333 0.00 0.00 0.00 2.75
537 635 5.721232 ACTCCTTAACCAGTGATCTAAACG 58.279 41.667 0.00 0.00 0.00 3.60
538 636 4.501071 TCCTTAACCAGTGATCTAAACGC 58.499 43.478 0.00 0.00 0.00 4.84
539 637 4.222145 TCCTTAACCAGTGATCTAAACGCT 59.778 41.667 0.00 0.00 0.00 5.07
540 638 4.567159 CCTTAACCAGTGATCTAAACGCTC 59.433 45.833 0.00 0.00 0.00 5.03
541 639 3.963428 AACCAGTGATCTAAACGCTCT 57.037 42.857 0.00 0.00 0.00 4.09
542 640 3.963428 ACCAGTGATCTAAACGCTCTT 57.037 42.857 0.00 0.00 0.00 2.85
543 641 5.401531 AACCAGTGATCTAAACGCTCTTA 57.598 39.130 0.00 0.00 0.00 2.10
544 642 5.599999 ACCAGTGATCTAAACGCTCTTAT 57.400 39.130 0.00 0.00 0.00 1.73
545 643 6.710597 ACCAGTGATCTAAACGCTCTTATA 57.289 37.500 0.00 0.00 0.00 0.98
546 644 6.740110 ACCAGTGATCTAAACGCTCTTATAG 58.260 40.000 0.00 0.00 0.00 1.31
547 645 6.153067 CCAGTGATCTAAACGCTCTTATAGG 58.847 44.000 0.00 0.00 0.00 2.57
548 646 6.153067 CAGTGATCTAAACGCTCTTATAGGG 58.847 44.000 0.00 0.00 43.65 3.53
549 647 6.016192 CAGTGATCTAAACGCTCTTATAGGGA 60.016 42.308 0.00 0.00 40.56 4.20
550 648 6.207810 AGTGATCTAAACGCTCTTATAGGGAG 59.792 42.308 0.00 0.00 40.56 4.30
570 668 1.211949 GCAAGTGAGTATTAGGCCCCA 59.788 52.381 0.00 0.00 0.00 4.96
571 669 2.919228 CAAGTGAGTATTAGGCCCCAC 58.081 52.381 0.00 0.00 0.00 4.61
573 671 0.828677 GTGAGTATTAGGCCCCACGT 59.171 55.000 0.00 0.00 0.00 4.49
576 674 1.885850 GTATTAGGCCCCACGTGCG 60.886 63.158 10.91 0.32 0.00 5.34
578 676 1.615165 TATTAGGCCCCACGTGCGAA 61.615 55.000 10.91 0.00 0.00 4.70
579 677 3.765660 TATTAGGCCCCACGTGCGAAC 62.766 57.143 10.91 0.00 0.00 3.95
581 679 4.382320 GGCCCCACGTGCGAACTA 62.382 66.667 10.91 0.00 0.00 2.24
582 680 2.357760 GCCCCACGTGCGAACTAA 60.358 61.111 10.91 0.00 0.00 2.24
583 681 1.743995 GCCCCACGTGCGAACTAAT 60.744 57.895 10.91 0.00 0.00 1.73
584 682 1.702491 GCCCCACGTGCGAACTAATC 61.702 60.000 10.91 0.00 0.00 1.75
585 683 0.108329 CCCCACGTGCGAACTAATCT 60.108 55.000 10.91 0.00 0.00 2.40
586 684 0.999406 CCCACGTGCGAACTAATCTG 59.001 55.000 10.91 0.00 0.00 2.90
587 685 1.671850 CCCACGTGCGAACTAATCTGT 60.672 52.381 10.91 0.00 0.00 3.41
588 686 1.390123 CCACGTGCGAACTAATCTGTG 59.610 52.381 10.91 0.00 0.00 3.66
589 687 1.390123 CACGTGCGAACTAATCTGTGG 59.610 52.381 0.82 0.00 0.00 4.17
590 688 1.000506 ACGTGCGAACTAATCTGTGGT 59.999 47.619 0.00 0.00 0.00 4.16
591 689 2.066262 CGTGCGAACTAATCTGTGGTT 58.934 47.619 0.00 0.00 0.00 3.67
592 690 2.159841 CGTGCGAACTAATCTGTGGTTG 60.160 50.000 0.00 0.00 0.00 3.77
594 692 2.037902 TGCGAACTAATCTGTGGTTGGA 59.962 45.455 0.00 0.00 0.00 3.53
595 693 3.270877 GCGAACTAATCTGTGGTTGGAT 58.729 45.455 0.00 0.00 0.00 3.41
596 694 3.063997 GCGAACTAATCTGTGGTTGGATG 59.936 47.826 0.00 0.00 0.00 3.51
597 695 3.623060 CGAACTAATCTGTGGTTGGATGG 59.377 47.826 0.00 0.00 0.00 3.51
598 696 4.589908 GAACTAATCTGTGGTTGGATGGT 58.410 43.478 0.00 0.00 0.00 3.55
601 699 5.745227 ACTAATCTGTGGTTGGATGGTTAG 58.255 41.667 0.00 0.00 0.00 2.34
602 700 4.927267 AATCTGTGGTTGGATGGTTAGA 57.073 40.909 0.00 0.00 0.00 2.10
605 703 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
607 705 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
608 706 1.913419 GGTTGGATGGTTAGAGGGACA 59.087 52.381 0.00 0.00 0.00 4.02
609 707 2.307686 GGTTGGATGGTTAGAGGGACAA 59.692 50.000 0.00 0.00 0.00 3.18
611 709 3.931907 TGGATGGTTAGAGGGACAATG 57.068 47.619 0.00 0.00 0.00 2.82
612 710 2.509548 TGGATGGTTAGAGGGACAATGG 59.490 50.000 0.00 0.00 0.00 3.16
613 711 2.509964 GGATGGTTAGAGGGACAATGGT 59.490 50.000 0.00 0.00 0.00 3.55
614 712 3.714798 GGATGGTTAGAGGGACAATGGTA 59.285 47.826 0.00 0.00 0.00 3.25
615 713 4.351111 GGATGGTTAGAGGGACAATGGTAT 59.649 45.833 0.00 0.00 0.00 2.73
616 714 5.163088 GGATGGTTAGAGGGACAATGGTATT 60.163 44.000 0.00 0.00 0.00 1.89
617 715 5.367945 TGGTTAGAGGGACAATGGTATTC 57.632 43.478 0.00 0.00 0.00 1.75
618 716 5.036916 TGGTTAGAGGGACAATGGTATTCT 58.963 41.667 0.00 0.00 0.00 2.40
619 717 6.206787 TGGTTAGAGGGACAATGGTATTCTA 58.793 40.000 0.00 0.00 0.00 2.10
622 720 3.648545 AGAGGGACAATGGTATTCTAGCC 59.351 47.826 0.00 0.00 0.00 3.93
624 722 2.441750 GGGACAATGGTATTCTAGCCCA 59.558 50.000 0.00 0.00 33.28 5.36
627 725 2.849943 ACAATGGTATTCTAGCCCACCA 59.150 45.455 10.41 10.41 44.76 4.17
629 727 1.507140 TGGTATTCTAGCCCACCAGG 58.493 55.000 5.37 0.00 36.15 4.45
641 739 1.609208 CCACCAGGGTTCAAGTTCTG 58.391 55.000 0.00 0.00 0.00 3.02
642 740 1.133792 CCACCAGGGTTCAAGTTCTGT 60.134 52.381 0.00 0.00 0.00 3.41
643 741 2.654863 CACCAGGGTTCAAGTTCTGTT 58.345 47.619 0.00 0.00 0.00 3.16
645 743 1.338020 CCAGGGTTCAAGTTCTGTTGC 59.662 52.381 0.00 0.00 0.00 4.17
646 744 2.301346 CAGGGTTCAAGTTCTGTTGCT 58.699 47.619 0.00 0.00 0.00 3.91
647 745 2.291741 CAGGGTTCAAGTTCTGTTGCTC 59.708 50.000 0.00 0.00 0.00 4.26
648 746 1.264288 GGGTTCAAGTTCTGTTGCTCG 59.736 52.381 0.00 0.00 0.00 5.03
649 747 1.334149 GGTTCAAGTTCTGTTGCTCGC 60.334 52.381 0.00 0.00 0.00 5.03
650 748 1.330521 GTTCAAGTTCTGTTGCTCGCA 59.669 47.619 0.00 0.00 0.00 5.10
651 749 1.882912 TCAAGTTCTGTTGCTCGCAT 58.117 45.000 0.00 0.00 0.00 4.73
652 750 2.221169 TCAAGTTCTGTTGCTCGCATT 58.779 42.857 0.00 0.00 0.00 3.56
653 751 3.398406 TCAAGTTCTGTTGCTCGCATTA 58.602 40.909 0.00 0.00 0.00 1.90
654 752 4.002982 TCAAGTTCTGTTGCTCGCATTAT 58.997 39.130 0.00 0.00 0.00 1.28
657 755 3.375299 AGTTCTGTTGCTCGCATTATTCC 59.625 43.478 0.00 0.00 0.00 3.01
658 756 3.266510 TCTGTTGCTCGCATTATTCCT 57.733 42.857 0.00 0.00 0.00 3.36
659 757 2.938451 TCTGTTGCTCGCATTATTCCTG 59.062 45.455 0.00 0.00 0.00 3.86
660 758 2.016318 TGTTGCTCGCATTATTCCTGG 58.984 47.619 0.00 0.00 0.00 4.45
661 759 2.288666 GTTGCTCGCATTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
662 760 2.880890 GTTGCTCGCATTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
663 761 3.213206 TGCTCGCATTATTCCTGGATT 57.787 42.857 0.00 0.00 0.00 3.01
664 762 3.554934 TGCTCGCATTATTCCTGGATTT 58.445 40.909 0.00 0.00 0.00 2.17
665 763 4.713553 TGCTCGCATTATTCCTGGATTTA 58.286 39.130 0.00 0.00 0.00 1.40
667 765 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
668 766 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
670 768 8.296713 GCTCGCATTATTCCTGGATTTATTTTA 58.703 33.333 0.00 0.00 0.00 1.52
692 790 9.607285 TTTTAAGATTTTCAGTGATACGCTTTC 57.393 29.630 0.00 0.00 0.00 2.62
693 791 6.801539 AAGATTTTCAGTGATACGCTTTCA 57.198 33.333 0.00 0.00 0.00 2.69
694 792 6.801539 AGATTTTCAGTGATACGCTTTCAA 57.198 33.333 0.00 0.00 0.00 2.69
695 793 7.383102 AGATTTTCAGTGATACGCTTTCAAT 57.617 32.000 0.00 0.00 0.00 2.57
699 797 5.592104 TCAGTGATACGCTTTCAATAGGA 57.408 39.130 0.00 0.00 0.00 2.94
700 798 5.972935 TCAGTGATACGCTTTCAATAGGAA 58.027 37.500 0.00 0.00 0.00 3.36
701 799 6.042777 TCAGTGATACGCTTTCAATAGGAAG 58.957 40.000 0.00 0.00 36.72 3.46
703 801 6.535150 CAGTGATACGCTTTCAATAGGAAGAA 59.465 38.462 0.00 0.00 36.72 2.52
704 802 7.064609 CAGTGATACGCTTTCAATAGGAAGAAA 59.935 37.037 0.00 0.00 36.72 2.52
706 804 4.663636 ACGCTTTCAATAGGAAGAAACG 57.336 40.909 0.00 0.00 36.72 3.60
707 805 4.312443 ACGCTTTCAATAGGAAGAAACGA 58.688 39.130 1.00 0.00 36.72 3.85
708 806 4.389077 ACGCTTTCAATAGGAAGAAACGAG 59.611 41.667 1.00 0.00 36.72 4.18
709 807 4.389077 CGCTTTCAATAGGAAGAAACGAGT 59.611 41.667 0.00 0.00 36.72 4.18
710 808 5.444745 CGCTTTCAATAGGAAGAAACGAGTC 60.445 44.000 0.00 0.00 36.72 3.36
711 809 5.444745 GCTTTCAATAGGAAGAAACGAGTCG 60.445 44.000 11.85 11.85 36.72 4.18
712 810 3.508762 TCAATAGGAAGAAACGAGTCGC 58.491 45.455 13.59 0.00 0.00 5.19
713 811 2.580966 ATAGGAAGAAACGAGTCGCC 57.419 50.000 13.59 4.35 0.00 5.54
714 812 1.542492 TAGGAAGAAACGAGTCGCCT 58.458 50.000 13.59 12.14 33.53 5.52
715 813 1.542492 AGGAAGAAACGAGTCGCCTA 58.458 50.000 13.59 0.00 0.00 3.93
716 814 1.201880 AGGAAGAAACGAGTCGCCTAC 59.798 52.381 13.59 1.98 0.00 3.18
717 815 1.257539 GAAGAAACGAGTCGCCTACG 58.742 55.000 13.59 0.00 42.01 3.51
741 839 8.561932 CGATAACTTCGTAAATCTCAAGATGA 57.438 34.615 0.00 0.00 43.01 2.92
746 844 9.823647 AACTTCGTAAATCTCAAGATGATATGT 57.176 29.630 0.00 0.00 34.49 2.29
749 847 9.914131 TTCGTAAATCTCAAGATGATATGTAGG 57.086 33.333 0.00 0.00 34.49 3.18
753 851 4.492646 TCTCAAGATGATATGTAGGCCCA 58.507 43.478 0.00 0.00 0.00 5.36
754 852 4.529769 TCTCAAGATGATATGTAGGCCCAG 59.470 45.833 0.00 0.00 0.00 4.45
755 853 4.234550 TCAAGATGATATGTAGGCCCAGT 58.765 43.478 0.00 0.00 0.00 4.00
757 855 4.139162 AGATGATATGTAGGCCCAGTCT 57.861 45.455 0.00 0.00 0.00 3.24
758 856 4.093011 AGATGATATGTAGGCCCAGTCTC 58.907 47.826 0.00 0.00 0.00 3.36
759 857 3.619900 TGATATGTAGGCCCAGTCTCT 57.380 47.619 0.00 0.00 0.00 3.10
760 858 3.501349 TGATATGTAGGCCCAGTCTCTC 58.499 50.000 0.00 0.00 0.00 3.20
761 859 1.982660 TATGTAGGCCCAGTCTCTCG 58.017 55.000 0.00 0.00 0.00 4.04
762 860 0.259065 ATGTAGGCCCAGTCTCTCGA 59.741 55.000 0.00 0.00 0.00 4.04
763 861 0.039180 TGTAGGCCCAGTCTCTCGAA 59.961 55.000 0.00 0.00 0.00 3.71
764 862 1.342076 TGTAGGCCCAGTCTCTCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
765 863 1.067821 GTAGGCCCAGTCTCTCGAATG 59.932 57.143 0.00 0.00 35.13 2.67
771 2561 3.616560 GCCCAGTCTCTCGAATGTGTTTA 60.617 47.826 0.00 0.00 33.59 2.01
772 2562 4.759782 CCCAGTCTCTCGAATGTGTTTAT 58.240 43.478 0.00 0.00 33.59 1.40
773 2563 5.681437 GCCCAGTCTCTCGAATGTGTTTATA 60.681 44.000 0.00 0.00 33.59 0.98
775 2565 6.183360 CCCAGTCTCTCGAATGTGTTTATAGA 60.183 42.308 0.00 0.00 33.59 1.98
777 2567 7.759886 CCAGTCTCTCGAATGTGTTTATAGAAA 59.240 37.037 0.00 0.00 33.59 2.52
790 2580 9.952030 TGTGTTTATAGAAATAGAATGTGTGGA 57.048 29.630 0.00 0.00 0.00 4.02
805 2595 9.706691 AGAATGTGTGGATATACGTTTATAAGG 57.293 33.333 0.00 0.00 28.74 2.69
806 2596 8.842358 AATGTGTGGATATACGTTTATAAGGG 57.158 34.615 0.00 0.00 0.00 3.95
807 2597 7.364149 TGTGTGGATATACGTTTATAAGGGT 57.636 36.000 0.00 0.00 0.00 4.34
808 2598 7.211573 TGTGTGGATATACGTTTATAAGGGTG 58.788 38.462 0.00 0.00 0.00 4.61
809 2599 7.069702 TGTGTGGATATACGTTTATAAGGGTGA 59.930 37.037 0.00 0.00 0.00 4.02
812 2602 8.796475 GTGGATATACGTTTATAAGGGTGAGTA 58.204 37.037 0.00 0.00 0.00 2.59
813 2603 9.537852 TGGATATACGTTTATAAGGGTGAGTAT 57.462 33.333 0.00 0.00 0.00 2.12
820 2610 7.040478 ACGTTTATAAGGGTGAGTATATACGCA 60.040 37.037 14.46 14.46 39.32 5.24
821 2611 7.972277 CGTTTATAAGGGTGAGTATATACGCAT 59.028 37.037 20.20 8.70 38.24 4.73
834 2624 9.776158 GAGTATATACGCATATATATGAGTGCC 57.224 37.037 30.86 18.11 44.50 5.01
835 2625 9.521841 AGTATATACGCATATATATGAGTGCCT 57.478 33.333 30.86 20.92 44.50 4.75
839 2629 5.763088 ACGCATATATATGAGTGCCTATCG 58.237 41.667 25.54 17.32 43.47 2.92
840 2630 5.299531 ACGCATATATATGAGTGCCTATCGT 59.700 40.000 25.54 17.83 43.47 3.73
841 2631 5.853810 CGCATATATATGAGTGCCTATCGTC 59.146 44.000 24.06 3.18 35.75 4.20
842 2632 6.293680 CGCATATATATGAGTGCCTATCGTCT 60.294 42.308 24.06 0.00 35.75 4.18
844 2634 7.469318 GCATATATATGAGTGCCTATCGTCTGT 60.469 40.741 24.06 0.00 35.75 3.41
846 2636 9.800572 ATATATATGAGTGCCTATCGTCTGTAT 57.199 33.333 0.00 0.00 0.00 2.29
847 2637 6.842437 ATATGAGTGCCTATCGTCTGTATT 57.158 37.500 0.00 0.00 0.00 1.89
848 2638 4.307443 TGAGTGCCTATCGTCTGTATTG 57.693 45.455 0.00 0.00 0.00 1.90
849 2639 3.053455 GAGTGCCTATCGTCTGTATTGC 58.947 50.000 0.00 0.00 0.00 3.56
850 2640 1.787155 GTGCCTATCGTCTGTATTGCG 59.213 52.381 0.00 0.00 0.00 4.85
851 2641 1.407618 TGCCTATCGTCTGTATTGCGT 59.592 47.619 0.00 0.00 0.00 5.24
852 2642 2.159156 TGCCTATCGTCTGTATTGCGTT 60.159 45.455 0.00 0.00 0.00 4.84
853 2643 2.864343 GCCTATCGTCTGTATTGCGTTT 59.136 45.455 0.00 0.00 0.00 3.60
854 2644 4.046462 GCCTATCGTCTGTATTGCGTTTA 58.954 43.478 0.00 0.00 0.00 2.01
857 2647 5.625721 CCTATCGTCTGTATTGCGTTTAGAG 59.374 44.000 0.00 0.00 0.00 2.43
858 2648 4.690184 TCGTCTGTATTGCGTTTAGAGA 57.310 40.909 0.00 0.00 0.00 3.10
859 2649 5.050644 TCGTCTGTATTGCGTTTAGAGAA 57.949 39.130 0.00 0.00 0.00 2.87
861 2651 4.265556 CGTCTGTATTGCGTTTAGAGAAGG 59.734 45.833 0.00 0.00 0.00 3.46
862 2652 5.408356 GTCTGTATTGCGTTTAGAGAAGGA 58.592 41.667 0.00 0.00 0.00 3.36
863 2653 5.867716 GTCTGTATTGCGTTTAGAGAAGGAA 59.132 40.000 0.00 0.00 0.00 3.36
864 2654 6.367969 GTCTGTATTGCGTTTAGAGAAGGAAA 59.632 38.462 0.00 0.00 0.00 3.13
865 2655 6.932400 TCTGTATTGCGTTTAGAGAAGGAAAA 59.068 34.615 0.00 0.00 0.00 2.29
866 2656 7.442969 TCTGTATTGCGTTTAGAGAAGGAAAAA 59.557 33.333 0.00 0.00 0.00 1.94
922 3488 3.429141 CTGCTGCTGCCACCTTCG 61.429 66.667 13.47 0.00 38.71 3.79
935 3506 2.357034 CTTCGTCACCACCACCCG 60.357 66.667 0.00 0.00 0.00 5.28
982 3569 0.323087 CTTCCCCAAACCCTAACCCG 60.323 60.000 0.00 0.00 0.00 5.28
983 3570 1.791695 TTCCCCAAACCCTAACCCGG 61.792 60.000 0.00 0.00 0.00 5.73
1017 3611 1.638529 CGATGCCCTTATCCTCCTCT 58.361 55.000 0.00 0.00 0.00 3.69
1418 4039 1.403089 TTTGAATCCCCCAATCCCCT 58.597 50.000 0.00 0.00 0.00 4.79
1455 4089 5.538849 TTAGGGGCTTTCGTTTTGATTTT 57.461 34.783 0.00 0.00 0.00 1.82
1463 4098 7.796660 GGGCTTTCGTTTTGATTTTATTTGTTC 59.203 33.333 0.00 0.00 0.00 3.18
1474 4109 2.937469 TATTTGTTCCGCATTGGCTG 57.063 45.000 0.00 0.00 38.10 4.85
1487 4123 0.814457 TTGGCTGCACGTTCTGTTTT 59.186 45.000 0.50 0.00 0.00 2.43
1491 4127 1.915965 GCTGCACGTTCTGTTTTCGTC 60.916 52.381 0.00 0.00 35.62 4.20
1515 4158 4.261322 GCTATTCCCTGCAATGTATGTGTG 60.261 45.833 0.00 0.00 0.00 3.82
1526 4175 1.143889 TGTATGTGTGCCTTTGGGTCA 59.856 47.619 0.00 0.00 34.45 4.02
1529 4178 1.525077 GTGTGCCTTTGGGTCACGA 60.525 57.895 0.00 0.00 40.19 4.35
1530 4179 1.227823 TGTGCCTTTGGGTCACGAG 60.228 57.895 0.00 0.00 40.19 4.18
1546 4195 2.930040 CACGAGTATTGTCTGCGGAAAT 59.070 45.455 0.00 2.62 0.00 2.17
1547 4196 3.370978 CACGAGTATTGTCTGCGGAAATT 59.629 43.478 0.00 0.00 0.00 1.82
1555 4204 2.481185 TGTCTGCGGAAATTTTCGGTAC 59.519 45.455 20.11 4.64 33.09 3.34
1593 4257 7.914871 CGTAGGAATCATGCAATTTTATTGTGA 59.085 33.333 0.00 0.00 0.00 3.58
1604 4327 6.873076 GCAATTTTATTGTGAAATGGGAGTGA 59.127 34.615 0.00 0.00 0.00 3.41
1620 4343 5.479375 TGGGAGTGAGGTTAGTGTAAACTAG 59.521 44.000 0.00 0.00 35.45 2.57
1686 4410 5.392595 GCTTCCTAGTGTCTGTACTGAAGAG 60.393 48.000 3.77 0.36 34.85 2.85
1687 4411 5.244189 TCCTAGTGTCTGTACTGAAGAGT 57.756 43.478 3.77 0.66 36.07 3.24
1688 4412 5.004448 TCCTAGTGTCTGTACTGAAGAGTG 58.996 45.833 3.77 0.00 33.21 3.51
1689 4413 5.004448 CCTAGTGTCTGTACTGAAGAGTGA 58.996 45.833 3.77 0.00 33.21 3.41
1690 4414 5.473846 CCTAGTGTCTGTACTGAAGAGTGAA 59.526 44.000 3.77 0.00 33.21 3.18
1691 4415 5.446143 AGTGTCTGTACTGAAGAGTGAAG 57.554 43.478 3.77 0.00 33.21 3.02
1692 4416 5.133941 AGTGTCTGTACTGAAGAGTGAAGA 58.866 41.667 3.77 0.00 33.21 2.87
1706 4430 4.045104 GAGTGAAGATACGGTGTGCATAG 58.955 47.826 0.00 0.00 0.00 2.23
1737 4469 2.305635 TGGTTGGTGATGATACAGCTGT 59.694 45.455 25.12 25.12 38.79 4.40
1866 4902 5.427378 AGCAAAAGGTAAAATGCAACAGTT 58.573 33.333 0.00 0.00 41.18 3.16
1913 4951 1.024271 CCAGCACCAATCCCGTATTG 58.976 55.000 1.70 1.70 43.99 1.90
1930 4969 5.268544 CGTATTGAATGGAATGCTGAGTTG 58.731 41.667 0.00 0.00 0.00 3.16
1936 4975 0.379669 GGAATGCTGAGTTGCCATCG 59.620 55.000 0.00 0.00 0.00 3.84
1940 4979 1.291184 TGCTGAGTTGCCATCGAACG 61.291 55.000 0.00 0.00 0.00 3.95
1944 4983 2.416547 CTGAGTTGCCATCGAACGAAAT 59.583 45.455 0.12 0.00 0.00 2.17
1945 4984 2.159430 TGAGTTGCCATCGAACGAAATG 59.841 45.455 0.12 0.00 0.00 2.32
1960 4999 5.242069 ACGAAATGTTGATGTTGTGTTGA 57.758 34.783 0.00 0.00 0.00 3.18
2372 5417 3.587061 ACACATGAACCCATTCCTCTGTA 59.413 43.478 0.00 0.00 33.49 2.74
2915 6896 2.214387 GCATGCTTATGCCTTTCCAC 57.786 50.000 11.37 0.00 41.47 4.02
2933 6914 3.874543 TCCACACACACGGCATATTTATC 59.125 43.478 0.00 0.00 0.00 1.75
3013 6994 6.474751 GCCTCATTTCTTGCTATGATGTTTTC 59.525 38.462 0.00 0.00 30.91 2.29
3028 7009 4.271696 TGTTTTCGATGATGGACTCACT 57.728 40.909 0.00 0.00 36.48 3.41
3086 7067 3.745975 CGAGCTTTCAGTGTGTCCAAATA 59.254 43.478 0.00 0.00 0.00 1.40
3118 7099 2.105134 TGGTGTCTTTGGTGTTATCGGT 59.895 45.455 0.00 0.00 0.00 4.69
3304 7285 0.394216 CCATCCTGGACAATTGCCGA 60.394 55.000 5.05 2.64 40.96 5.54
3819 7838 5.302059 CCAGCCATCTTACTAGTTGCTAGTA 59.698 44.000 0.00 10.86 44.35 1.82
3831 7850 6.996282 ACTAGTTGCTAGTAAAACATGTGGTT 59.004 34.615 0.00 0.00 44.35 3.67
3935 7961 9.478019 GTTGTAAAGAACTCAATATGTTGATCG 57.522 33.333 5.26 0.00 43.08 3.69
3937 7963 7.822334 TGTAAAGAACTCAATATGTTGATCGGT 59.178 33.333 5.26 0.00 43.08 4.69
3938 7964 6.668541 AAGAACTCAATATGTTGATCGGTG 57.331 37.500 5.26 0.00 43.08 4.94
3939 7965 4.572389 AGAACTCAATATGTTGATCGGTGC 59.428 41.667 5.26 0.00 43.08 5.01
3940 7966 3.206150 ACTCAATATGTTGATCGGTGCC 58.794 45.455 5.26 0.00 43.08 5.01
3941 7967 3.118261 ACTCAATATGTTGATCGGTGCCT 60.118 43.478 5.26 0.00 43.08 4.75
4047 8950 1.097547 ACGTTTGCTGCAGCTCTTGT 61.098 50.000 36.61 26.04 42.66 3.16
4078 9060 1.774254 TGGAGCTTCCCAGTTCTTCAA 59.226 47.619 0.00 0.00 35.03 2.69
4122 9104 1.754803 CTTCCGGGGAATTAAAAGGGC 59.245 52.381 0.00 0.00 33.28 5.19
4125 9107 0.454196 CGGGGAATTAAAAGGGCACG 59.546 55.000 0.00 0.00 0.00 5.34
4128 9110 1.480545 GGGAATTAAAAGGGCACGCAT 59.519 47.619 0.00 0.00 0.00 4.73
4192 9175 2.562738 GACAGGGGTTAGCTGCATTTTT 59.437 45.455 1.02 0.00 0.00 1.94
4228 9211 5.528600 TCCCTGAATTTATTTGTCTCCCA 57.471 39.130 0.00 0.00 0.00 4.37
4254 9237 5.714047 TCGATCAGTTGAGATGGCATATAC 58.286 41.667 0.00 0.00 0.00 1.47
4255 9238 5.478332 TCGATCAGTTGAGATGGCATATACT 59.522 40.000 0.00 0.00 0.00 2.12
4256 9239 5.804473 CGATCAGTTGAGATGGCATATACTC 59.196 44.000 0.00 3.68 0.00 2.59
4257 9240 6.350027 CGATCAGTTGAGATGGCATATACTCT 60.350 42.308 13.77 2.12 0.00 3.24
4258 9241 6.737720 TCAGTTGAGATGGCATATACTCTT 57.262 37.500 13.77 0.77 0.00 2.85
4259 9242 6.753180 TCAGTTGAGATGGCATATACTCTTC 58.247 40.000 13.77 8.16 0.00 2.87
4260 9243 6.324770 TCAGTTGAGATGGCATATACTCTTCA 59.675 38.462 13.77 0.00 0.00 3.02
4261 9244 7.015974 TCAGTTGAGATGGCATATACTCTTCAT 59.984 37.037 13.77 0.00 0.00 2.57
4262 9245 7.117956 CAGTTGAGATGGCATATACTCTTCATG 59.882 40.741 13.77 0.00 0.00 3.07
4263 9246 6.046290 TGAGATGGCATATACTCTTCATGG 57.954 41.667 13.77 0.00 0.00 3.66
4264 9247 5.781818 TGAGATGGCATATACTCTTCATGGA 59.218 40.000 13.77 0.00 0.00 3.41
4265 9248 6.070938 TGAGATGGCATATACTCTTCATGGAG 60.071 42.308 13.77 0.00 39.09 3.86
4266 9249 4.897509 TGGCATATACTCTTCATGGAGG 57.102 45.455 0.00 0.00 37.63 4.30
4267 9250 3.584406 TGGCATATACTCTTCATGGAGGG 59.416 47.826 0.00 0.00 37.63 4.30
4268 9251 3.840666 GGCATATACTCTTCATGGAGGGA 59.159 47.826 8.26 0.00 37.63 4.20
4357 9360 9.220767 GAGGTTAGAATCACAGTTGATAAAGTT 57.779 33.333 0.00 0.00 42.00 2.66
4417 9420 8.201464 TGATAAATGTTAATCGAGTTAGAGGCA 58.799 33.333 0.00 0.00 0.00 4.75
4435 9438 1.152652 ACCCCCGCAAACATGAACA 60.153 52.632 0.00 0.00 0.00 3.18
4442 9445 3.995705 CCCGCAAACATGAACAAATGATT 59.004 39.130 0.00 0.00 0.00 2.57
4445 9448 6.428799 CCGCAAACATGAACAAATGATTTTT 58.571 32.000 0.00 0.00 0.00 1.94
4496 9500 7.330946 GGTGCCCTTTTTATCAAGTTAATGTTC 59.669 37.037 0.00 0.00 0.00 3.18
4594 9598 2.510613 TGTTACAAAGGTAAGCAGGGC 58.489 47.619 0.00 0.00 40.03 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.504863 CCAAGACGAATCATGCCAAAAG 58.495 45.455 0.00 0.00 0.00 2.27
42 43 0.962356 AATGAGAAAGCCCTGGCACG 60.962 55.000 11.38 0.00 44.88 5.34
44 45 1.895131 GAAAATGAGAAAGCCCTGGCA 59.105 47.619 11.38 0.00 44.88 4.92
83 84 3.400255 GGTTGTCCTACACCTCTCAAAC 58.600 50.000 0.00 0.00 0.00 2.93
109 110 2.093553 CCCTTTAAACCGGTCCGATACA 60.094 50.000 14.39 0.00 0.00 2.29
110 111 2.554142 CCCTTTAAACCGGTCCGATAC 58.446 52.381 14.39 0.00 0.00 2.24
113 114 1.678724 CCCCTTTAAACCGGTCCGA 59.321 57.895 14.39 0.00 0.00 4.55
116 117 0.401356 TGTCCCCCTTTAAACCGGTC 59.599 55.000 8.04 0.00 0.00 4.79
117 118 0.852155 TTGTCCCCCTTTAAACCGGT 59.148 50.000 0.00 0.00 0.00 5.28
125 126 0.863956 TGACCCAATTGTCCCCCTTT 59.136 50.000 4.43 0.00 34.25 3.11
128 129 0.041090 ATGTGACCCAATTGTCCCCC 59.959 55.000 4.43 0.00 34.25 5.40
144 145 4.641396 TCAGTGACCGATCTTGAAAATGT 58.359 39.130 0.00 0.00 0.00 2.71
158 159 0.741221 GGACGGCTTGATCAGTGACC 60.741 60.000 0.00 0.00 0.00 4.02
159 160 1.078759 CGGACGGCTTGATCAGTGAC 61.079 60.000 0.00 0.00 0.00 3.67
160 161 1.215382 CGGACGGCTTGATCAGTGA 59.785 57.895 0.00 0.00 0.00 3.41
161 162 2.456119 GCGGACGGCTTGATCAGTG 61.456 63.158 0.00 0.00 39.11 3.66
162 163 2.125512 GCGGACGGCTTGATCAGT 60.126 61.111 0.00 0.00 39.11 3.41
163 164 2.892425 GGCGGACGGCTTGATCAG 60.892 66.667 11.19 0.00 42.94 2.90
164 165 4.467084 GGGCGGACGGCTTGATCA 62.467 66.667 17.62 0.00 42.94 2.92
182 183 4.976731 CCTCAAATCACCTCTATACGTTCG 59.023 45.833 0.00 0.00 0.00 3.95
188 189 4.232091 GGACCCCTCAAATCACCTCTATA 58.768 47.826 0.00 0.00 0.00 1.31
220 221 4.332683 TCTTTCTCCCTACCTTAGAGCA 57.667 45.455 0.00 0.00 0.00 4.26
224 225 5.979993 GGAGTTTCTTTCTCCCTACCTTAG 58.020 45.833 0.98 0.00 43.90 2.18
238 239 5.720041 TGCCTAGTAGTACATGGAGTTTCTT 59.280 40.000 13.63 0.00 0.00 2.52
240 241 5.593679 TGCCTAGTAGTACATGGAGTTTC 57.406 43.478 13.63 0.00 0.00 2.78
244 245 5.599999 AGTTTGCCTAGTAGTACATGGAG 57.400 43.478 13.63 1.47 0.00 3.86
245 246 5.720041 AGAAGTTTGCCTAGTAGTACATGGA 59.280 40.000 13.63 0.00 0.00 3.41
246 247 5.978814 AGAAGTTTGCCTAGTAGTACATGG 58.021 41.667 2.52 5.24 0.00 3.66
248 249 7.178628 TCAGAAGAAGTTTGCCTAGTAGTACAT 59.821 37.037 2.52 0.00 0.00 2.29
249 250 6.492429 TCAGAAGAAGTTTGCCTAGTAGTACA 59.508 38.462 2.52 0.00 0.00 2.90
250 251 6.921914 TCAGAAGAAGTTTGCCTAGTAGTAC 58.078 40.000 0.00 0.00 0.00 2.73
251 252 7.534723 TTCAGAAGAAGTTTGCCTAGTAGTA 57.465 36.000 0.00 0.00 0.00 1.82
252 253 6.420913 TTCAGAAGAAGTTTGCCTAGTAGT 57.579 37.500 0.00 0.00 0.00 2.73
253 254 7.730364 TTTTCAGAAGAAGTTTGCCTAGTAG 57.270 36.000 0.00 0.00 34.71 2.57
307 308 9.936759 TGTGACTTCTCAAAATATGTATACACA 57.063 29.630 7.96 0.00 39.52 3.72
314 315 9.337396 TGTAAAGTGTGACTTCTCAAAATATGT 57.663 29.630 0.00 0.00 37.47 2.29
317 318 9.997482 GTTTGTAAAGTGTGACTTCTCAAAATA 57.003 29.630 14.63 0.33 39.63 1.40
318 319 8.739972 AGTTTGTAAAGTGTGACTTCTCAAAAT 58.260 29.630 14.63 12.57 39.63 1.82
319 320 8.106247 AGTTTGTAAAGTGTGACTTCTCAAAA 57.894 30.769 14.63 3.39 39.63 2.44
320 321 7.681939 AGTTTGTAAAGTGTGACTTCTCAAA 57.318 32.000 11.48 11.48 37.47 2.69
321 322 7.681939 AAGTTTGTAAAGTGTGACTTCTCAA 57.318 32.000 0.00 0.00 37.47 3.02
322 323 7.389330 TCAAAGTTTGTAAAGTGTGACTTCTCA 59.611 33.333 15.08 0.00 37.47 3.27
323 324 7.692705 GTCAAAGTTTGTAAAGTGTGACTTCTC 59.307 37.037 20.58 2.76 46.20 2.87
324 325 7.527457 GTCAAAGTTTGTAAAGTGTGACTTCT 58.473 34.615 20.58 0.00 46.20 2.85
325 326 7.721167 GTCAAAGTTTGTAAAGTGTGACTTC 57.279 36.000 20.58 3.31 46.20 3.01
328 329 8.448615 ACTTAGTCAAAGTTTGTAAAGTGTGAC 58.551 33.333 20.40 20.40 46.61 3.67
329 330 8.556213 ACTTAGTCAAAGTTTGTAAAGTGTGA 57.444 30.769 21.25 1.77 46.61 3.58
424 425 8.156820 TCTAGCATGCCAAACATATACAAGTAT 58.843 33.333 15.66 0.00 36.64 2.12
427 428 6.866010 TCTAGCATGCCAAACATATACAAG 57.134 37.500 15.66 0.00 36.64 3.16
430 431 6.808008 ACATCTAGCATGCCAAACATATAC 57.192 37.500 15.66 0.00 36.64 1.47
433 434 7.822161 ATTTACATCTAGCATGCCAAACATA 57.178 32.000 15.66 0.00 36.64 2.29
436 437 9.533253 AAAATATTTACATCTAGCATGCCAAAC 57.467 29.630 15.66 0.00 0.00 2.93
441 442 9.185192 GGTGAAAAATATTTACATCTAGCATGC 57.815 33.333 10.51 10.51 0.00 4.06
469 567 7.770897 AGACCTCGTCAGCTTTAATCAAATTAT 59.229 33.333 0.00 0.00 34.60 1.28
484 582 7.861630 TCTTTTTAAAAATCAGACCTCGTCAG 58.138 34.615 13.55 0.00 34.60 3.51
511 609 8.627403 CGTTTAGATCACTGGTTAAGGAGTATA 58.373 37.037 0.00 0.00 0.00 1.47
512 610 7.490000 CGTTTAGATCACTGGTTAAGGAGTAT 58.510 38.462 0.00 0.00 0.00 2.12
513 611 6.626623 GCGTTTAGATCACTGGTTAAGGAGTA 60.627 42.308 0.00 0.00 0.00 2.59
515 613 4.567159 GCGTTTAGATCACTGGTTAAGGAG 59.433 45.833 0.00 0.00 0.00 3.69
516 614 4.222145 AGCGTTTAGATCACTGGTTAAGGA 59.778 41.667 0.00 0.00 0.00 3.36
517 615 4.504858 AGCGTTTAGATCACTGGTTAAGG 58.495 43.478 0.00 0.00 0.00 2.69
519 617 5.401531 AGAGCGTTTAGATCACTGGTTAA 57.598 39.130 0.00 0.00 37.82 2.01
520 618 5.401531 AAGAGCGTTTAGATCACTGGTTA 57.598 39.130 0.00 0.00 37.82 2.85
521 619 3.963428 AGAGCGTTTAGATCACTGGTT 57.037 42.857 0.00 0.00 37.82 3.67
522 620 3.963428 AAGAGCGTTTAGATCACTGGT 57.037 42.857 0.00 0.00 37.82 4.00
523 621 6.153067 CCTATAAGAGCGTTTAGATCACTGG 58.847 44.000 0.00 0.00 37.82 4.00
525 623 6.069331 TCCCTATAAGAGCGTTTAGATCACT 58.931 40.000 0.00 0.00 37.82 3.41
527 625 5.047943 GCTCCCTATAAGAGCGTTTAGATCA 60.048 44.000 8.29 0.00 46.58 2.92
528 626 5.404096 GCTCCCTATAAGAGCGTTTAGATC 58.596 45.833 8.29 0.00 46.58 2.75
529 627 5.394224 GCTCCCTATAAGAGCGTTTAGAT 57.606 43.478 8.29 0.00 46.58 1.98
530 628 4.850347 GCTCCCTATAAGAGCGTTTAGA 57.150 45.455 8.29 0.00 46.58 2.10
538 636 6.909550 ATACTCACTTGCTCCCTATAAGAG 57.090 41.667 0.00 0.00 0.00 2.85
539 637 7.451877 CCTAATACTCACTTGCTCCCTATAAGA 59.548 40.741 0.00 0.00 0.00 2.10
540 638 7.607250 CCTAATACTCACTTGCTCCCTATAAG 58.393 42.308 0.00 0.00 0.00 1.73
541 639 6.014499 GCCTAATACTCACTTGCTCCCTATAA 60.014 42.308 0.00 0.00 0.00 0.98
542 640 5.480772 GCCTAATACTCACTTGCTCCCTATA 59.519 44.000 0.00 0.00 0.00 1.31
543 641 4.284746 GCCTAATACTCACTTGCTCCCTAT 59.715 45.833 0.00 0.00 0.00 2.57
544 642 3.641906 GCCTAATACTCACTTGCTCCCTA 59.358 47.826 0.00 0.00 0.00 3.53
545 643 2.436173 GCCTAATACTCACTTGCTCCCT 59.564 50.000 0.00 0.00 0.00 4.20
546 644 2.485657 GGCCTAATACTCACTTGCTCCC 60.486 54.545 0.00 0.00 0.00 4.30
547 645 2.485657 GGGCCTAATACTCACTTGCTCC 60.486 54.545 0.84 0.00 0.00 4.70
548 646 2.485657 GGGGCCTAATACTCACTTGCTC 60.486 54.545 0.84 0.00 0.00 4.26
549 647 1.490910 GGGGCCTAATACTCACTTGCT 59.509 52.381 0.84 0.00 0.00 3.91
550 648 1.211949 TGGGGCCTAATACTCACTTGC 59.788 52.381 0.84 0.00 0.00 4.01
551 649 2.741878 CGTGGGGCCTAATACTCACTTG 60.742 54.545 0.84 0.00 0.00 3.16
552 650 1.485066 CGTGGGGCCTAATACTCACTT 59.515 52.381 0.84 0.00 0.00 3.16
570 668 1.000506 ACCACAGATTAGTTCGCACGT 59.999 47.619 0.00 0.00 0.00 4.49
571 669 1.710013 ACCACAGATTAGTTCGCACG 58.290 50.000 0.00 0.00 0.00 5.34
573 671 2.037902 TCCAACCACAGATTAGTTCGCA 59.962 45.455 0.00 0.00 0.00 5.10
576 674 4.589908 ACCATCCAACCACAGATTAGTTC 58.410 43.478 0.00 0.00 0.00 3.01
578 676 4.657814 AACCATCCAACCACAGATTAGT 57.342 40.909 0.00 0.00 0.00 2.24
579 677 5.989477 TCTAACCATCCAACCACAGATTAG 58.011 41.667 0.00 0.00 0.00 1.73
580 678 5.104527 CCTCTAACCATCCAACCACAGATTA 60.105 44.000 0.00 0.00 0.00 1.75
581 679 4.324563 CCTCTAACCATCCAACCACAGATT 60.325 45.833 0.00 0.00 0.00 2.40
582 680 3.200825 CCTCTAACCATCCAACCACAGAT 59.799 47.826 0.00 0.00 0.00 2.90
583 681 2.571653 CCTCTAACCATCCAACCACAGA 59.428 50.000 0.00 0.00 0.00 3.41
584 682 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
585 683 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
586 684 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
587 685 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
588 686 1.913419 TGTCCCTCTAACCATCCAACC 59.087 52.381 0.00 0.00 0.00 3.77
589 687 3.713826 TTGTCCCTCTAACCATCCAAC 57.286 47.619 0.00 0.00 0.00 3.77
590 688 3.053693 CCATTGTCCCTCTAACCATCCAA 60.054 47.826 0.00 0.00 0.00 3.53
591 689 2.509548 CCATTGTCCCTCTAACCATCCA 59.490 50.000 0.00 0.00 0.00 3.41
592 690 2.509964 ACCATTGTCCCTCTAACCATCC 59.490 50.000 0.00 0.00 0.00 3.51
594 692 5.672194 AGAATACCATTGTCCCTCTAACCAT 59.328 40.000 0.00 0.00 0.00 3.55
595 693 5.036916 AGAATACCATTGTCCCTCTAACCA 58.963 41.667 0.00 0.00 0.00 3.67
596 694 5.632034 AGAATACCATTGTCCCTCTAACC 57.368 43.478 0.00 0.00 0.00 2.85
597 695 6.224584 GCTAGAATACCATTGTCCCTCTAAC 58.775 44.000 0.00 0.00 0.00 2.34
598 696 5.307196 GGCTAGAATACCATTGTCCCTCTAA 59.693 44.000 0.00 0.00 0.00 2.10
601 699 3.244596 GGGCTAGAATACCATTGTCCCTC 60.245 52.174 0.00 0.00 0.00 4.30
602 700 2.711547 GGGCTAGAATACCATTGTCCCT 59.288 50.000 0.00 0.00 0.00 4.20
605 703 3.118038 TGGTGGGCTAGAATACCATTGTC 60.118 47.826 7.95 0.00 38.23 3.18
607 705 3.480470 CTGGTGGGCTAGAATACCATTG 58.520 50.000 11.34 0.73 41.92 2.82
608 706 2.443255 CCTGGTGGGCTAGAATACCATT 59.557 50.000 11.34 0.00 41.92 3.16
609 707 2.057922 CCTGGTGGGCTAGAATACCAT 58.942 52.381 11.34 0.00 41.92 3.55
622 720 1.133792 ACAGAACTTGAACCCTGGTGG 60.134 52.381 0.00 0.00 41.37 4.61
624 722 2.654863 CAACAGAACTTGAACCCTGGT 58.345 47.619 0.00 0.00 0.00 4.00
627 725 2.576615 GAGCAACAGAACTTGAACCCT 58.423 47.619 0.00 0.00 0.00 4.34
629 727 1.334149 GCGAGCAACAGAACTTGAACC 60.334 52.381 0.00 0.00 0.00 3.62
631 729 1.662517 TGCGAGCAACAGAACTTGAA 58.337 45.000 0.00 0.00 0.00 2.69
632 730 1.882912 ATGCGAGCAACAGAACTTGA 58.117 45.000 0.57 0.00 0.00 3.02
633 731 2.693797 AATGCGAGCAACAGAACTTG 57.306 45.000 0.57 0.00 0.00 3.16
635 733 3.375299 GGAATAATGCGAGCAACAGAACT 59.625 43.478 0.57 0.00 0.00 3.01
636 734 3.375299 AGGAATAATGCGAGCAACAGAAC 59.625 43.478 0.57 0.00 0.00 3.01
638 736 2.938451 CAGGAATAATGCGAGCAACAGA 59.062 45.455 0.57 0.00 0.00 3.41
639 737 2.032550 CCAGGAATAATGCGAGCAACAG 59.967 50.000 0.57 0.00 0.00 3.16
640 738 2.016318 CCAGGAATAATGCGAGCAACA 58.984 47.619 0.57 0.00 0.00 3.33
641 739 2.288666 TCCAGGAATAATGCGAGCAAC 58.711 47.619 0.57 0.00 0.00 4.17
642 740 2.708216 TCCAGGAATAATGCGAGCAA 57.292 45.000 0.57 0.00 0.00 3.91
643 741 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
667 765 8.779303 TGAAAGCGTATCACTGAAAATCTTAAA 58.221 29.630 0.00 0.00 0.00 1.52
668 766 8.317891 TGAAAGCGTATCACTGAAAATCTTAA 57.682 30.769 0.00 0.00 0.00 1.85
670 768 6.801539 TGAAAGCGTATCACTGAAAATCTT 57.198 33.333 0.00 0.00 0.00 2.40
671 769 6.801539 TTGAAAGCGTATCACTGAAAATCT 57.198 33.333 0.00 0.00 0.00 2.40
673 771 7.552687 TCCTATTGAAAGCGTATCACTGAAAAT 59.447 33.333 0.00 0.00 0.00 1.82
675 773 6.403049 TCCTATTGAAAGCGTATCACTGAAA 58.597 36.000 0.00 0.00 0.00 2.69
676 774 5.972935 TCCTATTGAAAGCGTATCACTGAA 58.027 37.500 0.00 0.00 0.00 3.02
677 775 5.592104 TCCTATTGAAAGCGTATCACTGA 57.408 39.130 0.00 0.00 0.00 3.41
679 777 6.222038 TCTTCCTATTGAAAGCGTATCACT 57.778 37.500 0.00 0.00 31.06 3.41
680 778 6.903883 TTCTTCCTATTGAAAGCGTATCAC 57.096 37.500 0.00 0.00 31.06 3.06
681 779 6.035650 CGTTTCTTCCTATTGAAAGCGTATCA 59.964 38.462 0.00 0.00 33.54 2.15
682 780 6.255020 TCGTTTCTTCCTATTGAAAGCGTATC 59.745 38.462 0.00 0.00 33.54 2.24
683 781 6.103997 TCGTTTCTTCCTATTGAAAGCGTAT 58.896 36.000 0.00 0.00 33.54 3.06
684 782 5.472148 TCGTTTCTTCCTATTGAAAGCGTA 58.528 37.500 0.00 0.00 33.54 4.42
685 783 4.312443 TCGTTTCTTCCTATTGAAAGCGT 58.688 39.130 0.00 0.00 33.54 5.07
686 784 4.389077 ACTCGTTTCTTCCTATTGAAAGCG 59.611 41.667 0.00 0.00 33.54 4.68
689 787 4.387862 GCGACTCGTTTCTTCCTATTGAAA 59.612 41.667 0.00 0.00 31.06 2.69
690 788 3.924686 GCGACTCGTTTCTTCCTATTGAA 59.075 43.478 0.00 0.00 0.00 2.69
691 789 3.508762 GCGACTCGTTTCTTCCTATTGA 58.491 45.455 0.00 0.00 0.00 2.57
692 790 2.603560 GGCGACTCGTTTCTTCCTATTG 59.396 50.000 0.00 0.00 0.00 1.90
693 791 2.496470 AGGCGACTCGTTTCTTCCTATT 59.504 45.455 0.00 0.00 32.90 1.73
694 792 2.100989 AGGCGACTCGTTTCTTCCTAT 58.899 47.619 0.00 0.00 32.90 2.57
695 793 1.542492 AGGCGACTCGTTTCTTCCTA 58.458 50.000 0.00 0.00 32.90 2.94
699 797 0.877071 TCGTAGGCGACTCGTTTCTT 59.123 50.000 0.00 0.00 42.81 2.52
700 798 2.548178 TCGTAGGCGACTCGTTTCT 58.452 52.632 0.00 0.00 42.81 2.52
716 814 8.561932 TCATCTTGAGATTTACGAAGTTATCG 57.438 34.615 0.00 0.00 44.39 2.92
720 818 9.823647 ACATATCATCTTGAGATTTACGAAGTT 57.176 29.630 0.00 0.00 35.39 2.66
723 821 9.914131 CCTACATATCATCTTGAGATTTACGAA 57.086 33.333 0.00 0.00 31.21 3.85
726 824 7.550906 GGGCCTACATATCATCTTGAGATTTAC 59.449 40.741 0.84 0.00 31.21 2.01
727 825 7.237471 TGGGCCTACATATCATCTTGAGATTTA 59.763 37.037 4.53 0.00 31.21 1.40
728 826 6.044754 TGGGCCTACATATCATCTTGAGATTT 59.955 38.462 4.53 0.00 31.21 2.17
729 827 5.549228 TGGGCCTACATATCATCTTGAGATT 59.451 40.000 4.53 0.00 31.21 2.40
730 828 5.096521 TGGGCCTACATATCATCTTGAGAT 58.903 41.667 4.53 0.00 34.56 2.75
731 829 4.492646 TGGGCCTACATATCATCTTGAGA 58.507 43.478 4.53 0.00 0.00 3.27
733 831 4.234550 ACTGGGCCTACATATCATCTTGA 58.765 43.478 4.53 0.00 0.00 3.02
735 833 4.497516 AGACTGGGCCTACATATCATCTT 58.502 43.478 4.53 0.00 0.00 2.40
736 834 4.093011 GAGACTGGGCCTACATATCATCT 58.907 47.826 4.53 0.00 0.00 2.90
737 835 4.093011 AGAGACTGGGCCTACATATCATC 58.907 47.826 4.53 0.00 0.00 2.92
738 836 4.093011 GAGAGACTGGGCCTACATATCAT 58.907 47.826 4.53 0.00 0.00 2.45
739 837 3.501349 GAGAGACTGGGCCTACATATCA 58.499 50.000 4.53 0.00 0.00 2.15
740 838 2.490115 CGAGAGACTGGGCCTACATATC 59.510 54.545 4.53 0.00 0.00 1.63
741 839 2.108425 TCGAGAGACTGGGCCTACATAT 59.892 50.000 4.53 0.00 33.31 1.78
743 841 0.259065 TCGAGAGACTGGGCCTACAT 59.741 55.000 4.53 0.00 33.31 2.29
744 842 0.039180 TTCGAGAGACTGGGCCTACA 59.961 55.000 4.53 0.00 41.84 2.74
745 843 1.067821 CATTCGAGAGACTGGGCCTAC 59.932 57.143 4.53 0.00 41.84 3.18
746 844 1.342076 ACATTCGAGAGACTGGGCCTA 60.342 52.381 4.53 0.00 44.16 3.93
747 845 0.616111 ACATTCGAGAGACTGGGCCT 60.616 55.000 4.53 0.00 44.16 5.19
748 846 0.460987 CACATTCGAGAGACTGGGCC 60.461 60.000 0.00 0.00 44.16 5.80
749 847 0.247736 ACACATTCGAGAGACTGGGC 59.752 55.000 0.00 0.00 46.92 5.36
764 862 9.952030 TCCACACATTCTATTTCTATAAACACA 57.048 29.630 0.00 0.00 0.00 3.72
773 2563 9.832445 AAACGTATATCCACACATTCTATTTCT 57.168 29.630 0.00 0.00 0.00 2.52
779 2569 9.706691 CCTTATAAACGTATATCCACACATTCT 57.293 33.333 0.00 0.00 0.00 2.40
785 2575 7.288389 ACTCACCCTTATAAACGTATATCCACA 59.712 37.037 0.00 0.00 0.00 4.17
786 2576 7.664758 ACTCACCCTTATAAACGTATATCCAC 58.335 38.462 0.00 0.00 0.00 4.02
787 2577 7.844493 ACTCACCCTTATAAACGTATATCCA 57.156 36.000 0.00 0.00 0.00 3.41
793 2583 8.450964 GCGTATATACTCACCCTTATAAACGTA 58.549 37.037 11.05 0.00 0.00 3.57
808 2598 9.776158 GGCACTCATATATATGCGTATATACTC 57.224 37.037 22.34 3.64 38.14 2.59
809 2599 9.521841 AGGCACTCATATATATGCGTATATACT 57.478 33.333 22.34 13.09 38.14 2.12
813 2603 8.665685 CGATAGGCACTCATATATATGCGTATA 58.334 37.037 16.05 8.09 44.68 1.47
814 2604 7.175119 ACGATAGGCACTCATATATATGCGTAT 59.825 37.037 16.05 20.15 46.31 3.06
815 2605 6.485648 ACGATAGGCACTCATATATATGCGTA 59.514 38.462 16.05 12.57 41.19 4.42
816 2606 5.299531 ACGATAGGCACTCATATATATGCGT 59.700 40.000 16.59 14.12 41.75 5.24
833 2623 5.516996 TCTAAACGCAATACAGACGATAGG 58.483 41.667 0.00 0.00 43.77 2.57
834 2624 6.427974 TCTCTAAACGCAATACAGACGATAG 58.572 40.000 0.00 0.00 46.19 2.08
835 2625 6.367686 TCTCTAAACGCAATACAGACGATA 57.632 37.500 0.00 0.00 0.00 2.92
836 2626 5.244785 TCTCTAAACGCAATACAGACGAT 57.755 39.130 0.00 0.00 0.00 3.73
837 2627 4.690184 TCTCTAAACGCAATACAGACGA 57.310 40.909 0.00 0.00 0.00 4.20
838 2628 4.265556 CCTTCTCTAAACGCAATACAGACG 59.734 45.833 0.00 0.00 0.00 4.18
839 2629 5.408356 TCCTTCTCTAAACGCAATACAGAC 58.592 41.667 0.00 0.00 0.00 3.51
840 2630 5.654603 TCCTTCTCTAAACGCAATACAGA 57.345 39.130 0.00 0.00 0.00 3.41
841 2631 6.721571 TTTCCTTCTCTAAACGCAATACAG 57.278 37.500 0.00 0.00 0.00 2.74
842 2632 7.499321 TTTTTCCTTCTCTAAACGCAATACA 57.501 32.000 0.00 0.00 0.00 2.29
863 2653 2.428890 TCAACTGAACGTGGGCATTTTT 59.571 40.909 0.00 0.00 0.00 1.94
864 2654 2.028130 TCAACTGAACGTGGGCATTTT 58.972 42.857 0.00 0.00 0.00 1.82
865 2655 1.336755 GTCAACTGAACGTGGGCATTT 59.663 47.619 0.00 0.00 0.00 2.32
866 2656 0.951558 GTCAACTGAACGTGGGCATT 59.048 50.000 0.00 0.00 0.00 3.56
867 2657 0.889186 GGTCAACTGAACGTGGGCAT 60.889 55.000 0.00 0.00 0.00 4.40
869 2659 2.258726 GGGTCAACTGAACGTGGGC 61.259 63.158 0.00 0.00 30.99 5.36
922 3488 2.517402 TTTGCGGGTGGTGGTGAC 60.517 61.111 0.00 0.00 0.00 3.67
935 3506 1.873572 GGAATGATGCGCCGTTTGC 60.874 57.895 4.18 0.00 0.00 3.68
1007 3601 1.530891 CGGCGGGAAGAGGAGGATA 60.531 63.158 0.00 0.00 0.00 2.59
1418 4039 1.907240 CCTAAAATCAGGGGAGGGGA 58.093 55.000 0.00 0.00 31.47 4.81
1455 4089 1.135141 GCAGCCAATGCGGAACAAATA 60.135 47.619 0.00 0.00 46.99 1.40
1474 4109 0.985416 GCGACGAAAACAGAACGTGC 60.985 55.000 0.00 0.00 40.29 5.34
1487 4123 0.464036 ATTGCAGGGAATAGCGACGA 59.536 50.000 0.00 0.00 0.00 4.20
1491 4127 3.058708 CACATACATTGCAGGGAATAGCG 60.059 47.826 0.00 0.00 0.00 4.26
1515 4158 1.737793 CAATACTCGTGACCCAAAGGC 59.262 52.381 0.00 0.00 36.11 4.35
1526 4175 2.736144 TTTCCGCAGACAATACTCGT 57.264 45.000 0.00 0.00 0.00 4.18
1529 4178 4.142687 CCGAAAATTTCCGCAGACAATACT 60.143 41.667 0.00 0.00 0.00 2.12
1530 4179 4.095610 CCGAAAATTTCCGCAGACAATAC 58.904 43.478 0.00 0.00 0.00 1.89
1546 4195 4.575645 ACGGACAGAAATTTGTACCGAAAA 59.424 37.500 27.05 0.00 40.73 2.29
1547 4196 4.128643 ACGGACAGAAATTTGTACCGAAA 58.871 39.130 27.05 0.00 40.73 3.46
1555 4204 6.489675 CATGATTCCTACGGACAGAAATTTG 58.510 40.000 0.00 0.00 0.00 2.32
1593 4257 5.836024 TTACACTAACCTCACTCCCATTT 57.164 39.130 0.00 0.00 0.00 2.32
1604 4327 6.415206 TCTGTTGCTAGTTTACACTAACCT 57.585 37.500 0.00 0.00 34.94 3.50
1652 4376 6.663953 ACAGACACTAGGAAGCTATCTTAACA 59.336 38.462 0.00 0.00 31.48 2.41
1671 4395 6.128254 CGTATCTTCACTCTTCAGTACAGACA 60.128 42.308 0.00 0.00 0.00 3.41
1686 4410 4.041740 TCTATGCACACCGTATCTTCAC 57.958 45.455 0.00 0.00 0.00 3.18
1687 4411 4.584743 AGATCTATGCACACCGTATCTTCA 59.415 41.667 0.00 0.00 0.00 3.02
1688 4412 4.920340 CAGATCTATGCACACCGTATCTTC 59.080 45.833 0.00 0.00 0.00 2.87
1689 4413 4.584743 TCAGATCTATGCACACCGTATCTT 59.415 41.667 0.00 0.00 0.00 2.40
1690 4414 4.145052 TCAGATCTATGCACACCGTATCT 58.855 43.478 0.00 0.00 0.00 1.98
1691 4415 4.505313 TCAGATCTATGCACACCGTATC 57.495 45.455 0.00 0.00 0.00 2.24
1692 4416 4.814147 CATCAGATCTATGCACACCGTAT 58.186 43.478 0.00 0.00 0.00 3.06
1706 4430 2.408271 TCACCAACCAGCATCAGATC 57.592 50.000 0.00 0.00 0.00 2.75
1737 4469 0.246360 CCATGTGAGCACCTCGTGTA 59.754 55.000 0.00 0.00 35.75 2.90
1866 4902 3.202818 AGGAATAGGTTCATGTGCATGGA 59.797 43.478 11.68 0.61 39.24 3.41
1913 4951 1.820519 TGGCAACTCAGCATTCCATTC 59.179 47.619 0.00 0.00 35.83 2.67
1930 4969 2.892373 TCAACATTTCGTTCGATGGC 57.108 45.000 0.00 0.00 34.86 4.40
1936 4975 5.741510 TCAACACAACATCAACATTTCGTTC 59.258 36.000 0.00 0.00 34.86 3.95
1940 4979 5.051508 GCTGTCAACACAACATCAACATTTC 60.052 40.000 0.00 0.00 29.82 2.17
1944 4983 2.098934 GGCTGTCAACACAACATCAACA 59.901 45.455 0.00 0.00 29.82 3.33
1945 4984 2.358898 AGGCTGTCAACACAACATCAAC 59.641 45.455 0.00 0.00 29.82 3.18
1960 4999 2.814805 AAGACCAATGCATAGGCTGT 57.185 45.000 5.80 0.00 41.91 4.40
2332 5377 0.604243 GTGTGTTGCGGGGTACATCA 60.604 55.000 0.00 0.00 0.00 3.07
2372 5417 8.050316 ACATTCCTTATAAATGAGAGGTGGAT 57.950 34.615 3.06 0.00 37.51 3.41
2549 6477 0.243095 GCCAGAAGCCTGAAAAGCTG 59.757 55.000 0.00 0.00 43.02 4.24
2581 6510 7.821652 TCAAATTATTGCCAATTCGACAGTTA 58.178 30.769 0.00 0.00 36.45 2.24
2787 6741 8.502105 TTCAGATAATTGCATAGCATCATAGG 57.498 34.615 0.00 0.00 38.76 2.57
2915 6896 2.869801 ACCGATAAATATGCCGTGTGTG 59.130 45.455 0.00 0.00 0.00 3.82
2933 6914 4.695455 ACAACACTTGGATCTCAATAACCG 59.305 41.667 0.00 0.00 34.45 4.44
3013 6994 1.537776 GCCTCAGTGAGTCCATCATCG 60.538 57.143 18.74 1.46 40.92 3.84
3028 7009 2.771943 AGGGAACTTCATTATCGCCTCA 59.228 45.455 0.00 0.00 37.44 3.86
3109 7090 2.294074 GGGCATGCTTTACCGATAACA 58.706 47.619 18.92 0.00 0.00 2.41
3118 7099 0.038021 TCAGCTGTGGGCATGCTTTA 59.962 50.000 18.92 0.99 44.79 1.85
3152 7133 9.513906 TTCATAATCAAAGAACACATCCTTACA 57.486 29.630 0.00 0.00 0.00 2.41
3304 7285 0.399949 TGTCAAGGGACTCCAGGTGT 60.400 55.000 0.00 0.00 44.61 4.16
3819 7838 3.517500 ACTCCCAACAAACCACATGTTTT 59.482 39.130 0.00 0.00 44.80 2.43
3831 7850 4.529716 AAAGGTAAAGGACTCCCAACAA 57.470 40.909 0.00 0.00 33.88 2.83
3931 7957 2.821366 CAGGCACAGGCACCGATC 60.821 66.667 0.00 0.00 43.71 3.69
3932 7958 3.640407 ACAGGCACAGGCACCGAT 61.640 61.111 0.00 0.00 43.71 4.18
3933 7959 4.624364 CACAGGCACAGGCACCGA 62.624 66.667 0.00 0.00 43.71 4.69
3937 7963 4.960866 CAGGCACAGGCACAGGCA 62.961 66.667 0.00 0.00 43.71 4.75
3938 7964 4.962836 ACAGGCACAGGCACAGGC 62.963 66.667 0.00 0.00 43.71 4.85
3939 7965 2.981909 CACAGGCACAGGCACAGG 60.982 66.667 0.00 0.00 43.71 4.00
3940 7966 2.981909 CCACAGGCACAGGCACAG 60.982 66.667 0.00 0.00 43.71 3.66
3941 7967 3.807839 ACCACAGGCACAGGCACA 61.808 61.111 0.00 0.00 43.71 4.57
4122 9104 4.501714 GCACATGGGCCATGCGTG 62.502 66.667 39.55 31.84 44.80 5.34
4125 9107 2.420043 GATGCACATGGGCCATGC 59.580 61.111 39.55 31.03 44.80 4.06
4128 9110 2.438254 GTCGATGCACATGGGCCA 60.438 61.111 19.33 9.61 0.00 5.36
4133 9115 2.226200 TGAAAGTTGGTCGATGCACATG 59.774 45.455 0.00 0.00 0.00 3.21
4134 9116 2.226437 GTGAAAGTTGGTCGATGCACAT 59.774 45.455 0.00 0.00 0.00 3.21
4228 9211 3.877559 TGCCATCTCAACTGATCGAAAT 58.122 40.909 0.00 0.00 0.00 2.17
4254 9237 3.640967 CCTTCTACTCCCTCCATGAAGAG 59.359 52.174 0.00 0.00 34.57 2.85
4255 9238 3.012959 ACCTTCTACTCCCTCCATGAAGA 59.987 47.826 0.00 0.00 34.57 2.87
4256 9239 3.379452 ACCTTCTACTCCCTCCATGAAG 58.621 50.000 0.00 0.00 0.00 3.02
4257 9240 3.491766 ACCTTCTACTCCCTCCATGAA 57.508 47.619 0.00 0.00 0.00 2.57
4258 9241 4.620086 TTACCTTCTACTCCCTCCATGA 57.380 45.455 0.00 0.00 0.00 3.07
4259 9242 5.221742 GGATTTACCTTCTACTCCCTCCATG 60.222 48.000 0.00 0.00 35.41 3.66
4260 9243 4.908481 GGATTTACCTTCTACTCCCTCCAT 59.092 45.833 0.00 0.00 35.41 3.41
4261 9244 4.296056 GGATTTACCTTCTACTCCCTCCA 58.704 47.826 0.00 0.00 35.41 3.86
4262 9245 4.959560 GGATTTACCTTCTACTCCCTCC 57.040 50.000 0.00 0.00 35.41 4.30
4417 9420 0.757188 TTGTTCATGTTTGCGGGGGT 60.757 50.000 0.00 0.00 0.00 4.95
4449 9452 9.120538 GGCACCTTATAGACAAATTTAATCTGA 57.879 33.333 12.35 1.19 0.00 3.27
4506 9510 6.765403 ACCACACATTAGTATATATGGCGTT 58.235 36.000 0.00 0.00 0.00 4.84
4508 9512 7.063426 CAGAACCACACATTAGTATATATGGCG 59.937 40.741 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.