Multiple sequence alignment - TraesCS3A01G410500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G410500 chr3A 100.000 2970 0 0 666 3635 654567969 654570938 0.000000e+00 5485.0
1 TraesCS3A01G410500 chr3A 98.333 780 12 1 2857 3635 654577126 654577905 0.000000e+00 1367.0
2 TraesCS3A01G410500 chr3A 78.253 1568 251 49 1355 2856 654783337 654784880 0.000000e+00 924.0
3 TraesCS3A01G410500 chr3A 82.068 948 127 26 1467 2386 654358734 654359666 0.000000e+00 769.0
4 TraesCS3A01G410500 chr3A 79.865 889 133 32 1501 2374 654383073 654383930 3.100000e-170 608.0
5 TraesCS3A01G410500 chr3A 100.000 191 0 0 1 191 654567304 654567494 1.610000e-93 353.0
6 TraesCS3A01G410500 chr3A 94.565 184 10 0 8 191 654782081 654782264 5.940000e-73 285.0
7 TraesCS3A01G410500 chr3A 92.391 184 14 0 8 191 655083165 655083348 2.780000e-66 263.0
8 TraesCS3A01G410500 chr3A 92.697 178 13 0 1 178 654382605 654382782 1.300000e-64 257.0
9 TraesCS3A01G410500 chr3A 91.160 181 16 0 1 181 654357714 654357894 2.800000e-61 246.0
10 TraesCS3A01G410500 chr3B 89.649 2222 189 24 668 2857 684249018 684251230 0.000000e+00 2791.0
11 TraesCS3A01G410500 chr3B 78.896 1341 199 46 1574 2851 684266338 684267657 0.000000e+00 832.0
12 TraesCS3A01G410500 chr3B 81.256 1019 144 27 1397 2386 683679544 683680544 0.000000e+00 780.0
13 TraesCS3A01G410500 chr3B 81.603 886 121 19 1507 2374 684040749 684041610 0.000000e+00 695.0
14 TraesCS3A01G410500 chr3B 82.773 714 92 17 1668 2374 683759273 683759962 3.100000e-170 608.0
15 TraesCS3A01G410500 chr3B 84.236 609 84 7 1769 2374 684096365 684096964 1.880000e-162 582.0
16 TraesCS3A01G410500 chr3B 96.335 191 7 0 1 191 684248688 684248878 7.580000e-82 315.0
17 TraesCS3A01G410500 chr3B 94.565 184 10 0 8 191 684265199 684265382 5.940000e-73 285.0
18 TraesCS3A01G410500 chr3B 92.697 178 13 0 1 178 683758420 683758597 1.300000e-64 257.0
19 TraesCS3A01G410500 chr3B 76.471 272 48 10 1035 1300 684040465 684040726 2.280000e-27 134.0
20 TraesCS3A01G410500 chr3B 90.625 64 6 0 2522 2585 684389939 684390002 6.470000e-13 86.1
21 TraesCS3A01G410500 chr6A 96.334 791 26 3 2847 3635 116983310 116982521 0.000000e+00 1297.0
22 TraesCS3A01G410500 chr7A 96.662 779 24 2 2857 3635 572212811 572213587 0.000000e+00 1293.0
23 TraesCS3A01G410500 chr7A 78.672 783 132 25 1898 2653 429047908 429047134 4.220000e-134 488.0
24 TraesCS3A01G410500 chr4A 96.556 784 19 5 2857 3635 44073304 44072524 0.000000e+00 1291.0
25 TraesCS3A01G410500 chr4A 96.538 780 25 2 2857 3635 208782331 208783109 0.000000e+00 1290.0
26 TraesCS3A01G410500 chr1A 96.552 783 22 3 2857 3635 481192708 481193489 0.000000e+00 1291.0
27 TraesCS3A01G410500 chr1A 96.538 780 25 2 2856 3635 29990573 29991350 0.000000e+00 1290.0
28 TraesCS3A01G410500 chr2A 96.543 781 24 2 2857 3635 35586607 35587386 0.000000e+00 1290.0
29 TraesCS3A01G410500 chr5A 96.188 787 28 2 2849 3635 46434859 46435643 0.000000e+00 1286.0
30 TraesCS3A01G410500 chr3D 81.102 889 129 22 1497 2374 519353513 519354373 0.000000e+00 675.0
31 TraesCS3A01G410500 chr3D 79.021 572 85 26 1373 1920 519334301 519334861 3.450000e-95 359.0
32 TraesCS3A01G410500 chr3D 94.022 184 11 0 8 191 519682144 519682327 2.760000e-71 279.0
33 TraesCS3A01G410500 chr3D 91.525 177 15 0 5 181 519333598 519333774 1.010000e-60 244.0
34 TraesCS3A01G410500 chr3D 81.250 256 38 8 1047 1296 519353244 519353495 7.960000e-47 198.0
35 TraesCS3A01G410500 chr7B 79.597 794 131 19 1898 2666 375442157 375441370 1.150000e-149 540.0
36 TraesCS3A01G410500 chr7D 78.715 794 138 21 1898 2666 381001815 381001028 5.420000e-138 501.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G410500 chr3A 654567304 654570938 3634 False 2919.0 5485 100.0000 1 3635 2 chr3A.!!$F5 3634
1 TraesCS3A01G410500 chr3A 654577126 654577905 779 False 1367.0 1367 98.3330 2857 3635 1 chr3A.!!$F1 778
2 TraesCS3A01G410500 chr3A 654782081 654784880 2799 False 604.5 924 86.4090 8 2856 2 chr3A.!!$F6 2848
3 TraesCS3A01G410500 chr3A 654357714 654359666 1952 False 507.5 769 86.6140 1 2386 2 chr3A.!!$F3 2385
4 TraesCS3A01G410500 chr3A 654382605 654383930 1325 False 432.5 608 86.2810 1 2374 2 chr3A.!!$F4 2373
5 TraesCS3A01G410500 chr3B 684248688 684251230 2542 False 1553.0 2791 92.9920 1 2857 2 chr3B.!!$F6 2856
6 TraesCS3A01G410500 chr3B 683679544 683680544 1000 False 780.0 780 81.2560 1397 2386 1 chr3B.!!$F1 989
7 TraesCS3A01G410500 chr3B 684096365 684096964 599 False 582.0 582 84.2360 1769 2374 1 chr3B.!!$F2 605
8 TraesCS3A01G410500 chr3B 684265199 684267657 2458 False 558.5 832 86.7305 8 2851 2 chr3B.!!$F7 2843
9 TraesCS3A01G410500 chr3B 683758420 683759962 1542 False 432.5 608 87.7350 1 2374 2 chr3B.!!$F4 2373
10 TraesCS3A01G410500 chr3B 684040465 684041610 1145 False 414.5 695 79.0370 1035 2374 2 chr3B.!!$F5 1339
11 TraesCS3A01G410500 chr6A 116982521 116983310 789 True 1297.0 1297 96.3340 2847 3635 1 chr6A.!!$R1 788
12 TraesCS3A01G410500 chr7A 572212811 572213587 776 False 1293.0 1293 96.6620 2857 3635 1 chr7A.!!$F1 778
13 TraesCS3A01G410500 chr7A 429047134 429047908 774 True 488.0 488 78.6720 1898 2653 1 chr7A.!!$R1 755
14 TraesCS3A01G410500 chr4A 44072524 44073304 780 True 1291.0 1291 96.5560 2857 3635 1 chr4A.!!$R1 778
15 TraesCS3A01G410500 chr4A 208782331 208783109 778 False 1290.0 1290 96.5380 2857 3635 1 chr4A.!!$F1 778
16 TraesCS3A01G410500 chr1A 481192708 481193489 781 False 1291.0 1291 96.5520 2857 3635 1 chr1A.!!$F2 778
17 TraesCS3A01G410500 chr1A 29990573 29991350 777 False 1290.0 1290 96.5380 2856 3635 1 chr1A.!!$F1 779
18 TraesCS3A01G410500 chr2A 35586607 35587386 779 False 1290.0 1290 96.5430 2857 3635 1 chr2A.!!$F1 778
19 TraesCS3A01G410500 chr5A 46434859 46435643 784 False 1286.0 1286 96.1880 2849 3635 1 chr5A.!!$F1 786
20 TraesCS3A01G410500 chr3D 519353244 519354373 1129 False 436.5 675 81.1760 1047 2374 2 chr3D.!!$F3 1327
21 TraesCS3A01G410500 chr3D 519333598 519334861 1263 False 301.5 359 85.2730 5 1920 2 chr3D.!!$F2 1915
22 TraesCS3A01G410500 chr7B 375441370 375442157 787 True 540.0 540 79.5970 1898 2666 1 chr7B.!!$R1 768
23 TraesCS3A01G410500 chr7D 381001028 381001815 787 True 501.0 501 78.7150 1898 2666 1 chr7D.!!$R1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 1081 0.320050 TGAAGATACAGCCGCACACA 59.680 50.0 0.0 0.0 0.0 3.72 F
2193 3172 0.529378 GGGTATGACAAGGACGACGT 59.471 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 3354 0.329261 TCATTGGGAAGCCTCACTGG 59.671 55.000 0.0 0.0 39.35 4.00 R
3222 4252 5.050490 GTGATCATATTCTTAGCCGTGTGT 58.950 41.667 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.920912 ACGAGGAACTGGGCGGAA 60.921 61.111 0.00 0.00 41.55 4.30
112 113 4.341783 GGCCAGGTGTGCTGCTCT 62.342 66.667 0.00 0.00 0.00 4.09
719 1053 2.027003 TTCGTTCGGTTCTTGGTTGT 57.973 45.000 0.00 0.00 0.00 3.32
739 1081 0.320050 TGAAGATACAGCCGCACACA 59.680 50.000 0.00 0.00 0.00 3.72
756 1101 1.746615 CAAGGTGGTCGCATGGGAG 60.747 63.158 13.49 0.00 0.00 4.30
898 1248 1.064505 CATTACAATGTCAGCCGCCTG 59.935 52.381 0.00 0.00 40.54 4.85
909 1259 2.033194 GCCGCCTGACACACTAACC 61.033 63.158 0.00 0.00 0.00 2.85
921 1271 4.139038 ACACACTAACCACCACATAAACC 58.861 43.478 0.00 0.00 0.00 3.27
950 1300 5.814705 CAGAGAACAGAGACAACAGAAGTTT 59.185 40.000 0.00 0.00 35.28 2.66
1038 1422 9.732130 ATGAAGACTGTAAGCTTTCTTATCTTT 57.268 29.630 3.20 0.00 34.38 2.52
1077 1548 2.359900 CGCTAGAGGAAAACTTGCCAT 58.640 47.619 0.00 0.00 33.93 4.40
1090 1565 2.761767 ACTTGCCATTATGCATTGCTCA 59.238 40.909 3.54 0.00 41.70 4.26
1101 1576 4.155063 TGCATTGCTCAGTACACCATAT 57.845 40.909 10.49 0.00 0.00 1.78
1123 1598 1.135170 GCCTTCATTTTCTCTGCAGCC 60.135 52.381 9.47 0.00 0.00 4.85
1154 1630 6.472686 TTTGGTGTTACTTAATTGGCAAGT 57.527 33.333 5.96 5.58 39.50 3.16
1185 1662 6.352737 GGGATGGGTGACTTACAAATAGAAGA 60.353 42.308 0.00 0.00 0.00 2.87
1202 1679 5.441718 AGAAGAACATGTGGATGTATGGT 57.558 39.130 0.00 0.00 42.30 3.55
1330 2001 5.515797 TGATCTACTTATCTTCACACGGG 57.484 43.478 0.00 0.00 0.00 5.28
1346 2017 5.307456 TCACACGGGTAAATTATATGCCCTA 59.693 40.000 0.00 0.00 37.24 3.53
1360 2032 2.016961 CCCTACGACATGCACATGC 58.983 57.895 10.50 0.00 42.39 4.06
1419 2104 2.884639 CGGAGTTTCTGTCCAACCAAAT 59.115 45.455 0.00 0.00 33.14 2.32
1449 2134 1.939974 TGTCGTCAGCCTATGCATTC 58.060 50.000 3.54 0.00 41.13 2.67
1450 2135 1.221414 GTCGTCAGCCTATGCATTCC 58.779 55.000 3.54 0.00 41.13 3.01
1462 2147 1.466856 TGCATTCCTCTGGCAATGAC 58.533 50.000 0.41 0.00 34.05 3.06
1474 2163 0.807667 GCAATGACGATCTCAGCCGT 60.808 55.000 0.00 0.00 42.17 5.68
1519 2211 9.042450 TCTTGATACAACAGGGAAGTATTCTTA 57.958 33.333 0.00 0.00 46.56 2.10
1525 2217 7.981142 ACAACAGGGAAGTATTCTTAGGTTTA 58.019 34.615 0.00 0.00 46.56 2.01
1556 2248 3.314541 AAGTACAGTTGGGAGTTAGCG 57.685 47.619 0.00 0.00 0.00 4.26
1566 2482 0.955905 GGAGTTAGCGTTTTTGGGCA 59.044 50.000 0.00 0.00 0.00 5.36
1622 2548 9.585099 TTGGCAGTGATTTGAATTATGTTAATC 57.415 29.630 0.00 0.00 0.00 1.75
1732 2676 5.928264 CCTGAAATTTCTGTCAAATCCAACC 59.072 40.000 18.64 0.00 0.00 3.77
1734 2678 6.279882 TGAAATTTCTGTCAAATCCAACCAC 58.720 36.000 18.64 0.00 0.00 4.16
1767 2720 4.757149 AGTAAATTCTCGCTCAACTGCTTT 59.243 37.500 0.00 0.00 0.00 3.51
1799 2753 9.244292 TCTGTACCTATGTCCTATGATGTATTC 57.756 37.037 0.00 0.00 0.00 1.75
1824 2778 9.716531 TCCTATGCAGTTATCTGAATTTATGAG 57.283 33.333 4.94 0.00 43.76 2.90
1863 2831 4.680934 CGCAAGTCTGTCAAAACATTTG 57.319 40.909 0.00 0.00 34.13 2.32
1907 2878 9.920133 ATACAGTGTGCTTATGTCTTCTATATG 57.080 33.333 5.88 0.00 0.00 1.78
1931 2907 6.158598 GCATGGCATATTTATTGGTTACTGG 58.841 40.000 0.00 0.00 0.00 4.00
2015 2994 9.294030 GCTATAATTTTGATGTTGAAGGACTTG 57.706 33.333 0.00 0.00 0.00 3.16
2158 3137 4.455190 AGACTGAGTAAGGACGTGTTCTAC 59.545 45.833 0.00 0.00 0.00 2.59
2193 3172 0.529378 GGGTATGACAAGGACGACGT 59.471 55.000 0.00 0.00 0.00 4.34
2269 3249 2.290896 TGCCTCACCAATAAAGGACTGG 60.291 50.000 0.00 0.00 36.24 4.00
2288 3268 2.777114 TGGCAGCTATCCTGGACAATTA 59.223 45.455 0.00 0.00 42.03 1.40
2317 3297 1.697432 TGGAGTCCCTTGACATTCGTT 59.303 47.619 6.74 0.00 44.33 3.85
2329 3309 5.681337 TGACATTCGTTATTGCTTCAACA 57.319 34.783 0.00 0.00 0.00 3.33
2331 3311 6.676950 TGACATTCGTTATTGCTTCAACATT 58.323 32.000 0.00 0.00 0.00 2.71
2332 3312 6.581919 TGACATTCGTTATTGCTTCAACATTG 59.418 34.615 0.00 0.00 0.00 2.82
2342 3322 3.193903 TGCTTCAACATTGACATGGATGG 59.806 43.478 0.00 0.00 36.83 3.51
2346 3326 1.009335 CATTGACATGGATGGCGCG 60.009 57.895 0.00 0.00 39.17 6.86
2374 3354 3.873910 TCAAAGTGTGCTAGGATAAGCC 58.126 45.455 0.00 0.00 42.05 4.35
2404 3384 3.760684 GCTTCCCAATGACTCAACTGATT 59.239 43.478 0.00 0.00 0.00 2.57
2468 3469 3.813724 GGGTCCTTTTCGGCTGATTATAC 59.186 47.826 0.00 0.00 0.00 1.47
2627 3628 0.613777 AAGTGAACTCCATCGGGGAC 59.386 55.000 0.00 0.00 42.15 4.46
2708 3719 0.110010 GCGCTTTGGTTCTTCTGCTC 60.110 55.000 0.00 0.00 0.00 4.26
2743 3754 3.080319 GCTTCTGCATTGACTTCTCCTT 58.920 45.455 0.00 0.00 39.41 3.36
2766 3779 6.585695 TTAAGATCGTAGAGTGTTTCCTGT 57.414 37.500 0.00 0.00 43.63 4.00
2773 3786 5.242171 TCGTAGAGTGTTTCCTGTATTGTCA 59.758 40.000 0.00 0.00 0.00 3.58
2786 3799 5.643777 CCTGTATTGTCAAACCGATCTTCTT 59.356 40.000 0.00 0.00 0.00 2.52
2930 3960 0.179045 GATGCATAGCAACGGGAGGT 60.179 55.000 0.00 0.00 43.62 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 1.982073 GCGTGGCCTAGCATGTTGAC 61.982 60.000 16.31 0.00 0.00 3.18
665 666 0.750249 GGGGTTTGAGGGTTTGTGTG 59.250 55.000 0.00 0.00 0.00 3.82
666 667 0.397957 GGGGGTTTGAGGGTTTGTGT 60.398 55.000 0.00 0.00 0.00 3.72
719 1053 1.270571 TGTGTGCGGCTGTATCTTCAA 60.271 47.619 0.00 0.00 0.00 2.69
739 1081 2.671070 CTCCCATGCGACCACCTT 59.329 61.111 0.00 0.00 0.00 3.50
748 1093 2.128771 TTTCTAGTTGCCTCCCATGC 57.871 50.000 0.00 0.00 0.00 4.06
756 1101 7.573968 AATCAGGACATAATTTCTAGTTGCC 57.426 36.000 0.00 0.00 0.00 4.52
862 1212 9.128404 ACATTGTAATGCTATGATTTCACTGAT 57.872 29.630 4.58 0.00 40.04 2.90
863 1213 8.510243 ACATTGTAATGCTATGATTTCACTGA 57.490 30.769 4.58 0.00 40.04 3.41
864 1214 8.400186 TGACATTGTAATGCTATGATTTCACTG 58.600 33.333 4.58 0.00 40.04 3.66
875 1225 1.939934 GCGGCTGACATTGTAATGCTA 59.060 47.619 0.00 0.00 40.04 3.49
876 1226 0.734889 GCGGCTGACATTGTAATGCT 59.265 50.000 0.00 0.00 40.04 3.79
898 1248 4.214758 GGTTTATGTGGTGGTTAGTGTGTC 59.785 45.833 0.00 0.00 0.00 3.67
909 1259 1.176527 CTGGGCTGGTTTATGTGGTG 58.823 55.000 0.00 0.00 0.00 4.17
921 1271 0.972134 TGTCTCTGTTCTCTGGGCTG 59.028 55.000 0.00 0.00 0.00 4.85
1011 1366 9.732130 AAGATAAGAAAGCTTACAGTCTTCATT 57.268 29.630 13.14 5.97 39.29 2.57
1012 1367 9.732130 AAAGATAAGAAAGCTTACAGTCTTCAT 57.268 29.630 13.14 7.13 39.29 2.57
1020 1375 8.149973 ACGAAACAAAGATAAGAAAGCTTACA 57.850 30.769 0.00 0.00 39.29 2.41
1025 1380 7.474640 CGTCTTACGAAACAAAGATAAGAAAGC 59.525 37.037 0.00 0.00 46.05 3.51
1026 1381 8.846452 CGTCTTACGAAACAAAGATAAGAAAG 57.154 34.615 0.00 0.00 46.05 2.62
1077 1548 3.949132 TGGTGTACTGAGCAATGCATAA 58.051 40.909 8.35 0.00 0.00 1.90
1090 1565 6.891908 AGAAAATGAAGGCAATATGGTGTACT 59.108 34.615 0.00 0.00 0.00 2.73
1101 1576 2.029649 GCTGCAGAGAAAATGAAGGCAA 60.030 45.455 20.43 0.00 0.00 4.52
1154 1630 4.431378 TGTAAGTCACCCATCCCTTCTTA 58.569 43.478 0.00 0.00 0.00 2.10
1185 1662 6.013379 TGGTTTAACCATACATCCACATGTT 58.987 36.000 13.44 0.00 44.79 2.71
1216 1881 8.620416 TGTCATAATCATCCGTTTATTGGAAAG 58.380 33.333 0.00 0.00 39.39 2.62
1273 1942 5.329399 AGGGTGGCTAAATGTTGTGATAAA 58.671 37.500 0.00 0.00 0.00 1.40
1330 2001 6.370442 TGCATGTCGTAGGGCATATAATTTAC 59.630 38.462 1.57 0.00 0.00 2.01
1360 2032 2.486191 GGTGGGCACAGAGGAATAGATG 60.486 54.545 0.00 0.00 0.00 2.90
1362 2034 1.204146 GGTGGGCACAGAGGAATAGA 58.796 55.000 0.00 0.00 0.00 1.98
1399 2082 6.208599 TCAATATTTGGTTGGACAGAAACTCC 59.791 38.462 0.00 0.00 0.00 3.85
1419 2104 3.195610 AGGCTGACGACAAGACATCAATA 59.804 43.478 0.00 0.00 0.00 1.90
1449 2134 1.137675 TGAGATCGTCATTGCCAGAGG 59.862 52.381 0.00 0.00 0.00 3.69
1450 2135 2.471818 CTGAGATCGTCATTGCCAGAG 58.528 52.381 0.00 0.00 33.51 3.35
1462 2147 1.272781 GAAGAACACGGCTGAGATCG 58.727 55.000 0.00 0.00 0.00 3.69
1505 2194 8.887393 TCAAACTAAACCTAAGAATACTTCCCT 58.113 33.333 0.00 0.00 37.53 4.20
1519 2211 8.344446 ACTGTACTTTGTTTCAAACTAAACCT 57.656 30.769 1.10 0.00 38.35 3.50
1525 2217 5.712917 TCCCAACTGTACTTTGTTTCAAACT 59.287 36.000 1.10 0.00 0.00 2.66
1556 2248 3.323751 AATGCTCAGATGCCCAAAAAC 57.676 42.857 0.00 0.00 0.00 2.43
1589 2505 2.487762 TCAAATCACTGCCAATTCGACC 59.512 45.455 0.00 0.00 0.00 4.79
1643 2569 6.585416 TCTGCACTCTAGCATATGAAATCAA 58.415 36.000 6.97 0.00 44.68 2.57
1679 2617 2.629137 ACTTGTTGATGCCTGCAATTGA 59.371 40.909 10.34 0.00 0.00 2.57
1758 2703 6.560253 AGGTACAGACATAAAAAGCAGTTG 57.440 37.500 0.00 0.00 0.00 3.16
1767 2720 9.601810 ATCATAGGACATAGGTACAGACATAAA 57.398 33.333 0.00 0.00 0.00 1.40
1799 2753 9.716531 TCTCATAAATTCAGATAACTGCATAGG 57.283 33.333 0.00 0.00 43.17 2.57
1842 2810 3.061006 GCAAATGTTTTGACAGACTTGCG 60.061 43.478 4.24 0.00 0.00 4.85
1907 2878 6.158598 CCAGTAACCAATAAATATGCCATGC 58.841 40.000 0.00 0.00 0.00 4.06
1931 2907 4.217118 CCTGCAAATATAGCACTTGGATCC 59.783 45.833 4.20 4.20 37.02 3.36
2015 2994 3.449632 GGAACTTCACTATCGCCTCTTC 58.550 50.000 0.00 0.00 0.00 2.87
2067 3046 1.538512 CACTCTCACCCACATTTGCAG 59.461 52.381 0.00 0.00 0.00 4.41
2158 3137 1.247567 ACCCACTGGCTTCAAAATCG 58.752 50.000 0.00 0.00 33.59 3.34
2193 3172 1.590591 TAGTTGCAATCCCCAGGCTA 58.409 50.000 0.59 0.00 0.00 3.93
2223 3203 0.936297 CAAACAGCTGCAAAGACCGC 60.936 55.000 15.27 0.00 0.00 5.68
2269 3249 3.142174 GGTAATTGTCCAGGATAGCTGC 58.858 50.000 0.00 0.00 0.00 5.25
2317 3297 6.406065 CCATCCATGTCAATGTTGAAGCAATA 60.406 38.462 0.00 0.00 39.21 1.90
2329 3309 2.837883 GCGCGCCATCCATGTCAAT 61.838 57.895 23.24 0.00 0.00 2.57
2331 3311 4.471908 AGCGCGCCATCCATGTCA 62.472 61.111 30.33 0.00 0.00 3.58
2332 3312 3.945434 CAGCGCGCCATCCATGTC 61.945 66.667 30.33 0.00 0.00 3.06
2353 3333 3.370527 GGGCTTATCCTAGCACACTTTGA 60.371 47.826 0.00 0.00 44.12 2.69
2374 3354 0.329261 TCATTGGGAAGCCTCACTGG 59.671 55.000 0.00 0.00 39.35 4.00
2404 3384 5.011125 GCTCCTGCACCTAGAAGTCATAATA 59.989 44.000 0.00 0.00 39.41 0.98
2416 3396 1.709578 CAGATAGGCTCCTGCACCTA 58.290 55.000 3.47 3.47 42.61 3.08
2468 3469 2.959030 TCATAGTCAGAACCAGATCCCG 59.041 50.000 0.00 0.00 0.00 5.14
2627 3628 1.069022 CCAGGCACTTTGATCACAACG 60.069 52.381 0.00 0.00 34.60 4.10
2743 3754 6.585695 ACAGGAAACACTCTACGATCTTAA 57.414 37.500 0.00 0.00 0.00 1.85
2766 3779 8.610248 TGTTTAAGAAGATCGGTTTGACAATA 57.390 30.769 0.00 0.00 0.00 1.90
2773 3786 6.877611 ACACATGTTTAAGAAGATCGGTTT 57.122 33.333 0.00 0.00 0.00 3.27
2786 3799 7.936847 AGGTAAATGACTCTCAACACATGTTTA 59.063 33.333 0.00 0.00 35.83 2.01
2930 3960 5.563876 AGGGTACGTAGATCATACTCTCA 57.436 43.478 0.00 0.00 0.00 3.27
3222 4252 5.050490 GTGATCATATTCTTAGCCGTGTGT 58.950 41.667 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.