Multiple sequence alignment - TraesCS3A01G410000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G410000 chr3A 100.000 5208 0 0 1 5208 654356683 654361890 0.000000e+00 9618.0
1 TraesCS3A01G410000 chr3A 93.348 887 59 0 3280 4166 654389641 654390527 0.000000e+00 1312.0
2 TraesCS3A01G410000 chr3A 87.249 996 119 5 3179 4166 638334207 638333212 0.000000e+00 1129.0
3 TraesCS3A01G410000 chr3A 81.439 1056 138 30 2092 3132 654383078 654384090 0.000000e+00 811.0
4 TraesCS3A01G410000 chr3A 82.068 948 127 26 2052 2984 654568770 654569689 0.000000e+00 769.0
5 TraesCS3A01G410000 chr3A 83.629 507 61 13 1031 1519 654782070 654782572 1.710000e-124 457.0
6 TraesCS3A01G410000 chr3A 87.936 373 37 4 974 1341 654382545 654382914 2.880000e-117 433.0
7 TraesCS3A01G410000 chr3A 87.407 135 5 1 3130 3252 654359680 654359814 1.510000e-30 145.0
8 TraesCS3A01G410000 chr3A 95.455 44 2 0 4203 4246 638333105 638333062 2.600000e-08 71.3
9 TraesCS3A01G410000 chr3B 93.901 3066 135 18 2041 5074 683679606 683682651 0.000000e+00 4578.0
10 TraesCS3A01G410000 chr3B 91.296 988 86 0 3179 4166 684097051 684098038 0.000000e+00 1349.0
11 TraesCS3A01G410000 chr3B 91.287 987 85 1 3180 4165 683760050 683761036 0.000000e+00 1345.0
12 TraesCS3A01G410000 chr3B 90.688 988 92 0 3179 4166 684041697 684042684 0.000000e+00 1315.0
13 TraesCS3A01G410000 chr3B 88.146 987 117 0 3179 4165 659080749 659079763 0.000000e+00 1175.0
14 TraesCS3A01G410000 chr3B 90.548 730 45 10 1069 1785 683678772 683679490 0.000000e+00 944.0
15 TraesCS3A01G410000 chr3B 86.395 882 82 23 661 1516 683502935 683503804 0.000000e+00 929.0
16 TraesCS3A01G410000 chr3B 83.365 1058 123 28 2092 3132 684040749 684041770 0.000000e+00 929.0
17 TraesCS3A01G410000 chr3B 86.490 755 85 7 2385 3132 684096380 684097124 0.000000e+00 813.0
18 TraesCS3A01G410000 chr3B 83.577 889 105 22 2259 3132 683759260 683760122 0.000000e+00 795.0
19 TraesCS3A01G410000 chr3B 81.942 958 129 25 2052 2984 684249819 684250757 0.000000e+00 771.0
20 TraesCS3A01G410000 chr3B 89.934 606 41 9 661 1247 683481394 683481998 0.000000e+00 763.0
21 TraesCS3A01G410000 chr3B 91.189 454 9 15 1846 2270 683483065 683483516 5.810000e-164 588.0
22 TraesCS3A01G410000 chr3B 90.969 454 10 15 1846 2270 683504634 683505085 2.700000e-162 582.0
23 TraesCS3A01G410000 chr3B 86.036 444 48 10 1025 1457 684265182 684265622 1.020000e-126 464.0
24 TraesCS3A01G410000 chr3B 88.342 386 35 8 961 1341 683758349 683758729 6.150000e-124 455.0
25 TraesCS3A01G410000 chr3B 91.746 315 25 1 1032 1346 684248688 684249001 2.230000e-118 436.0
26 TraesCS3A01G410000 chr3B 86.162 383 47 5 961 1341 684095548 684095926 4.850000e-110 409.0
27 TraesCS3A01G410000 chr3B 90.064 312 15 4 769 1066 683678165 683678474 1.760000e-104 390.0
28 TraesCS3A01G410000 chr3B 95.378 238 11 0 1279 1516 683481998 683482235 3.810000e-101 379.0
29 TraesCS3A01G410000 chr3B 92.093 215 14 3 1542 1755 683482674 683482886 3.050000e-77 300.0
30 TraesCS3A01G410000 chr3B 92.093 215 14 3 1542 1755 683504243 683504455 3.050000e-77 300.0
31 TraesCS3A01G410000 chr3B 95.683 139 6 0 5070 5208 683683651 683683789 1.890000e-54 224.0
32 TraesCS3A01G410000 chr3D 92.579 2924 115 40 1611 4454 519333948 519336849 0.000000e+00 4104.0
33 TraesCS3A01G410000 chr3D 90.789 988 90 1 3179 4166 519354460 519355446 0.000000e+00 1319.0
34 TraesCS3A01G410000 chr3D 87.940 995 112 3 3179 4165 498207188 498206194 0.000000e+00 1166.0
35 TraesCS3A01G410000 chr3D 91.623 764 51 7 4446 5208 519337809 519338560 0.000000e+00 1044.0
36 TraesCS3A01G410000 chr3D 82.353 1054 129 29 2093 3132 519353523 519354533 0.000000e+00 863.0
37 TraesCS3A01G410000 chr3D 93.478 552 20 5 841 1376 519333388 519333939 0.000000e+00 806.0
38 TraesCS3A01G410000 chr3D 85.682 440 50 11 1039 1469 519682144 519682579 7.950000e-123 451.0
39 TraesCS3A01G410000 chr3D 96.296 135 5 0 2998 3132 519335499 519335633 6.790000e-54 222.0
40 TraesCS3A01G410000 chr3D 87.838 148 18 0 2985 3132 498207262 498207115 1.930000e-39 174.0
41 TraesCS3A01G410000 chr2B 87.109 256 25 6 297 546 240350485 240350232 3.070000e-72 283.0
42 TraesCS3A01G410000 chr2B 85.827 254 31 5 297 546 530102592 530102844 1.110000e-66 265.0
43 TraesCS3A01G410000 chr2D 86.641 262 20 9 298 544 14087318 14087579 5.140000e-70 276.0
44 TraesCS3A01G410000 chr7B 86.364 264 21 6 295 543 598296410 598296147 1.850000e-69 274.0
45 TraesCS3A01G410000 chr7B 81.731 208 30 6 5001 5207 128441469 128441269 3.230000e-37 167.0
46 TraesCS3A01G410000 chr7D 85.878 262 21 8 298 543 620992749 620993010 1.110000e-66 265.0
47 TraesCS3A01G410000 chr5A 85.200 250 25 11 298 543 444044051 444044292 4.030000e-61 246.0
48 TraesCS3A01G410000 chr5A 84.314 255 26 8 295 536 552951564 552951311 2.420000e-58 237.0
49 TraesCS3A01G410000 chr7A 84.436 257 29 9 298 544 115238977 115239232 5.210000e-60 243.0
50 TraesCS3A01G410000 chr4A 84.524 252 31 7 295 540 576572673 576572922 5.210000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G410000 chr3A 654356683 654361890 5207 False 4881.500000 9618 93.703500 1 5208 2 chr3A.!!$F4 5207
1 TraesCS3A01G410000 chr3A 654389641 654390527 886 False 1312.000000 1312 93.348000 3280 4166 1 chr3A.!!$F1 886
2 TraesCS3A01G410000 chr3A 654568770 654569689 919 False 769.000000 769 82.068000 2052 2984 1 chr3A.!!$F2 932
3 TraesCS3A01G410000 chr3A 654382545 654384090 1545 False 622.000000 811 84.687500 974 3132 2 chr3A.!!$F5 2158
4 TraesCS3A01G410000 chr3A 638333062 638334207 1145 True 600.150000 1129 91.352000 3179 4246 2 chr3A.!!$R1 1067
5 TraesCS3A01G410000 chr3A 654782070 654782572 502 False 457.000000 457 83.629000 1031 1519 1 chr3A.!!$F3 488
6 TraesCS3A01G410000 chr3B 683678165 683683789 5624 False 1534.000000 4578 92.549000 769 5208 4 chr3B.!!$F4 4439
7 TraesCS3A01G410000 chr3B 659079763 659080749 986 True 1175.000000 1175 88.146000 3179 4165 1 chr3B.!!$R1 986
8 TraesCS3A01G410000 chr3B 684040749 684042684 1935 False 1122.000000 1315 87.026500 2092 4166 2 chr3B.!!$F6 2074
9 TraesCS3A01G410000 chr3B 683758349 683761036 2687 False 865.000000 1345 87.735333 961 4165 3 chr3B.!!$F5 3204
10 TraesCS3A01G410000 chr3B 684095548 684098038 2490 False 857.000000 1349 87.982667 961 4166 3 chr3B.!!$F7 3205
11 TraesCS3A01G410000 chr3B 683502935 683505085 2150 False 603.666667 929 89.819000 661 2270 3 chr3B.!!$F3 1609
12 TraesCS3A01G410000 chr3B 684248688 684250757 2069 False 603.500000 771 86.844000 1032 2984 2 chr3B.!!$F8 1952
13 TraesCS3A01G410000 chr3B 683481394 683483516 2122 False 507.500000 763 92.148500 661 2270 4 chr3B.!!$F2 1609
14 TraesCS3A01G410000 chr3D 519333388 519338560 5172 False 1544.000000 4104 93.494000 841 5208 4 chr3D.!!$F2 4367
15 TraesCS3A01G410000 chr3D 519353523 519355446 1923 False 1091.000000 1319 86.571000 2093 4166 2 chr3D.!!$F3 2073
16 TraesCS3A01G410000 chr3D 498206194 498207262 1068 True 670.000000 1166 87.889000 2985 4165 2 chr3D.!!$R1 1180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.033228 GAGCCTGCTCGAGTATGCAT 59.967 55.0 26.86 15.10 38.59 3.96 F
230 231 0.035317 AATGCTTCGTGGTGAGCTGA 59.965 50.0 0.00 0.00 0.00 4.26 F
231 232 0.035317 ATGCTTCGTGGTGAGCTGAA 59.965 50.0 0.00 0.00 0.00 3.02 F
232 233 0.035317 TGCTTCGTGGTGAGCTGAAT 59.965 50.0 0.00 0.00 0.00 2.57 F
283 284 0.036952 ACATGCTTGGACACTCCTCG 60.037 55.0 4.44 0.00 37.46 4.63 F
284 285 0.036952 CATGCTTGGACACTCCTCGT 60.037 55.0 0.00 0.00 37.46 4.18 F
672 673 0.038166 TCAATTTGAGGAGCCCGCTT 59.962 50.0 0.00 0.00 0.00 4.68 F
682 683 0.107654 GAGCCCGCTTACAGATGGTT 60.108 55.0 0.00 0.00 0.00 3.67 F
1726 2688 0.179084 ATCACCGTGCATTACTCCGG 60.179 55.0 9.41 9.41 45.72 5.14 F
1937 3055 0.909610 TTAGCCACCCTCTGGTCTGG 60.910 60.0 0.00 0.00 45.57 3.86 F
3847 5226 0.036388 GAACTGCGATTGGGGAGACA 60.036 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 2725 0.167470 CTGCAGACAACATGAAGGCG 59.833 55.000 8.42 0.00 0.00 5.52 R
2141 3318 6.128282 TGGAAAATACTCAGAAGCGCTAAAAG 60.128 38.462 12.05 8.96 0.00 2.27 R
2238 3416 4.135306 CTGCACTCCAGCATATGAAATCT 58.865 43.478 6.97 0.00 44.68 2.40 R
2262 3451 6.584563 TCGCAGGTTGCAAAATTAGAATAAAC 59.415 34.615 0.00 0.00 45.36 2.01 R
2378 3580 4.869297 GCATAGCATCATAGGACACAGATC 59.131 45.833 0.00 0.00 0.00 2.75 R
2725 3971 3.673594 CGTCCTTATTCAGTCTGAAGCGT 60.674 47.826 19.64 6.89 40.05 5.07 R
3008 4254 0.813184 ACAAATTGCCCTCTCATGCG 59.187 50.000 0.00 0.00 0.00 4.73 R
3109 4487 1.072806 AGCTTGCACACCTGATTCTCA 59.927 47.619 0.00 0.00 0.00 3.27 R
3140 4518 0.813184 ACAAATTGCCCTCTCATGCG 59.187 50.000 0.00 0.00 0.00 4.73 R
4017 5396 0.944311 GACCGTTTCTCTTGCTCGCA 60.944 55.000 0.00 0.00 0.00 5.10 R
4970 7423 0.657368 CGAACAACAAAGCAGACGCC 60.657 55.000 0.00 0.00 39.83 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.552365 CGATGGGGTCGCATGCCT 62.552 66.667 13.15 0.00 44.33 4.75
20 21 2.828868 GATGGGGTCGCATGCCTA 59.171 61.111 13.15 0.00 0.00 3.93
21 22 1.302033 GATGGGGTCGCATGCCTAG 60.302 63.158 13.15 0.00 0.00 3.02
22 23 1.758440 GATGGGGTCGCATGCCTAGA 61.758 60.000 13.15 0.05 0.00 2.43
23 24 2.044806 ATGGGGTCGCATGCCTAGAC 62.045 60.000 13.15 13.58 0.00 2.59
24 25 2.731571 GGGGTCGCATGCCTAGACA 61.732 63.158 20.96 0.00 36.68 3.41
25 26 1.521681 GGGTCGCATGCCTAGACAC 60.522 63.158 20.96 16.06 36.68 3.67
26 27 1.521681 GGTCGCATGCCTAGACACC 60.522 63.158 20.96 10.80 36.68 4.16
27 28 1.218047 GTCGCATGCCTAGACACCA 59.782 57.895 13.15 0.00 35.19 4.17
28 29 0.391130 GTCGCATGCCTAGACACCAA 60.391 55.000 13.15 0.00 35.19 3.67
29 30 0.323302 TCGCATGCCTAGACACCAAA 59.677 50.000 13.15 0.00 0.00 3.28
30 31 0.729116 CGCATGCCTAGACACCAAAG 59.271 55.000 13.15 0.00 0.00 2.77
31 32 1.826385 GCATGCCTAGACACCAAAGT 58.174 50.000 6.36 0.00 0.00 2.66
32 33 1.740025 GCATGCCTAGACACCAAAGTC 59.260 52.381 6.36 0.00 38.81 3.01
33 34 2.002586 CATGCCTAGACACCAAAGTCG 58.997 52.381 0.00 0.00 43.24 4.18
34 35 1.334160 TGCCTAGACACCAAAGTCGA 58.666 50.000 0.00 0.00 43.24 4.20
35 36 1.000506 TGCCTAGACACCAAAGTCGAC 59.999 52.381 7.70 7.70 43.24 4.20
36 37 1.672145 GCCTAGACACCAAAGTCGACC 60.672 57.143 13.01 0.00 43.24 4.79
37 38 1.616865 CCTAGACACCAAAGTCGACCA 59.383 52.381 13.01 0.00 43.24 4.02
38 39 2.036733 CCTAGACACCAAAGTCGACCAA 59.963 50.000 13.01 0.00 43.24 3.67
39 40 2.240493 AGACACCAAAGTCGACCAAG 57.760 50.000 13.01 1.57 43.24 3.61
40 41 1.760613 AGACACCAAAGTCGACCAAGA 59.239 47.619 13.01 0.00 43.24 3.02
41 42 2.368875 AGACACCAAAGTCGACCAAGAT 59.631 45.455 13.01 0.00 43.24 2.40
42 43 2.737252 GACACCAAAGTCGACCAAGATC 59.263 50.000 13.01 0.00 0.00 2.75
43 44 1.726791 CACCAAAGTCGACCAAGATCG 59.273 52.381 13.01 0.00 43.63 3.69
44 45 1.337823 ACCAAAGTCGACCAAGATCGG 60.338 52.381 13.01 6.10 42.50 4.18
47 48 3.782042 GTCGACCAAGATCGGCAC 58.218 61.111 3.51 0.00 45.97 5.01
48 49 1.080093 GTCGACCAAGATCGGCACA 60.080 57.895 3.51 0.00 45.97 4.57
49 50 1.080093 TCGACCAAGATCGGCACAC 60.080 57.895 0.00 0.00 42.50 3.82
50 51 2.100631 CGACCAAGATCGGCACACC 61.101 63.158 0.00 0.00 38.47 4.16
77 78 3.593442 AAAAGTGGTGACCAAGGATGA 57.407 42.857 5.57 0.00 34.18 2.92
78 79 3.814504 AAAGTGGTGACCAAGGATGAT 57.185 42.857 5.57 0.00 34.18 2.45
79 80 2.795231 AGTGGTGACCAAGGATGATG 57.205 50.000 5.57 0.00 34.18 3.07
80 81 1.283029 AGTGGTGACCAAGGATGATGG 59.717 52.381 5.57 0.00 43.84 3.51
81 82 0.625316 TGGTGACCAAGGATGATGGG 59.375 55.000 0.00 0.00 42.48 4.00
82 83 0.753111 GGTGACCAAGGATGATGGGC 60.753 60.000 0.00 0.00 46.87 5.36
83 84 0.753111 GTGACCAAGGATGATGGGCC 60.753 60.000 0.00 0.00 46.07 5.80
84 85 1.526917 GACCAAGGATGATGGGCCG 60.527 63.158 0.00 0.00 40.33 6.13
85 86 2.203394 CCAAGGATGATGGGCCGG 60.203 66.667 0.00 0.00 34.15 6.13
86 87 2.908940 CAAGGATGATGGGCCGGC 60.909 66.667 21.18 21.18 0.00 6.13
87 88 4.209866 AAGGATGATGGGCCGGCC 62.210 66.667 38.57 38.57 0.00 6.13
89 90 4.650377 GGATGATGGGCCGGCCTC 62.650 72.222 42.70 33.05 36.10 4.70
90 91 4.996434 GATGATGGGCCGGCCTCG 62.996 72.222 42.70 0.00 36.10 4.63
109 110 2.973082 GCAAGGTGGCCATGGAAC 59.027 61.111 18.40 12.81 0.00 3.62
123 124 1.896220 TGGAACAATGCAGAGGTGTC 58.104 50.000 0.00 0.00 31.92 3.67
124 125 1.142667 TGGAACAATGCAGAGGTGTCA 59.857 47.619 0.00 0.00 31.92 3.58
125 126 1.808945 GGAACAATGCAGAGGTGTCAG 59.191 52.381 0.00 0.00 0.00 3.51
126 127 1.808945 GAACAATGCAGAGGTGTCAGG 59.191 52.381 0.00 0.00 0.00 3.86
127 128 0.037303 ACAATGCAGAGGTGTCAGGG 59.963 55.000 0.00 0.00 0.00 4.45
128 129 0.325933 CAATGCAGAGGTGTCAGGGA 59.674 55.000 0.00 0.00 0.00 4.20
129 130 0.326264 AATGCAGAGGTGTCAGGGAC 59.674 55.000 0.00 0.00 0.00 4.46
130 131 1.892819 ATGCAGAGGTGTCAGGGACG 61.893 60.000 0.00 0.00 34.95 4.79
131 132 2.973899 CAGAGGTGTCAGGGACGG 59.026 66.667 0.00 0.00 34.95 4.79
132 133 2.283966 AGAGGTGTCAGGGACGGG 60.284 66.667 0.00 0.00 34.95 5.28
133 134 3.391382 GAGGTGTCAGGGACGGGG 61.391 72.222 0.00 0.00 34.95 5.73
136 137 4.394712 GTGTCAGGGACGGGGCAG 62.395 72.222 0.00 0.00 34.95 4.85
139 140 4.000620 TCAGGGACGGGGCAGGTA 62.001 66.667 0.00 0.00 0.00 3.08
140 141 2.768344 CAGGGACGGGGCAGGTAT 60.768 66.667 0.00 0.00 0.00 2.73
141 142 2.042261 AGGGACGGGGCAGGTATT 59.958 61.111 0.00 0.00 0.00 1.89
142 143 2.192175 GGGACGGGGCAGGTATTG 59.808 66.667 0.00 0.00 0.00 1.90
143 144 2.192175 GGACGGGGCAGGTATTGG 59.808 66.667 0.00 0.00 0.00 3.16
149 150 2.902343 GGCAGGTATTGGCGAGCC 60.902 66.667 7.26 7.26 42.97 4.70
150 151 2.190578 GCAGGTATTGGCGAGCCT 59.809 61.111 15.75 0.00 36.94 4.58
151 152 4.131376 CAGGTATTGGCGAGCCTG 57.869 61.111 15.75 12.07 41.89 4.85
152 153 2.182842 CAGGTATTGGCGAGCCTGC 61.183 63.158 15.75 0.00 41.46 4.85
153 154 2.190578 GGTATTGGCGAGCCTGCT 59.809 61.111 15.75 0.00 36.94 4.24
154 155 1.889573 GGTATTGGCGAGCCTGCTC 60.890 63.158 15.75 9.11 39.55 4.26
162 163 4.334837 GAGCCTGCTCGAGTATGC 57.665 61.111 20.10 20.10 33.06 3.14
163 164 1.439228 GAGCCTGCTCGAGTATGCA 59.561 57.895 26.86 14.05 37.63 3.96
164 165 0.033228 GAGCCTGCTCGAGTATGCAT 59.967 55.000 26.86 15.10 38.59 3.96
165 166 0.249784 AGCCTGCTCGAGTATGCATG 60.250 55.000 26.86 12.91 38.59 4.06
166 167 0.531532 GCCTGCTCGAGTATGCATGT 60.532 55.000 22.10 0.00 38.59 3.21
167 168 1.215244 CCTGCTCGAGTATGCATGTG 58.785 55.000 15.13 0.00 38.59 3.21
168 169 1.202452 CCTGCTCGAGTATGCATGTGA 60.202 52.381 15.13 0.68 38.59 3.58
169 170 2.547430 CCTGCTCGAGTATGCATGTGAT 60.547 50.000 15.13 0.00 38.59 3.06
170 171 3.129109 CTGCTCGAGTATGCATGTGATT 58.871 45.455 15.13 0.00 38.59 2.57
171 172 2.867975 TGCTCGAGTATGCATGTGATTG 59.132 45.455 15.13 0.00 33.94 2.67
172 173 2.222678 GCTCGAGTATGCATGTGATTGG 59.777 50.000 15.13 0.00 0.00 3.16
173 174 3.461061 CTCGAGTATGCATGTGATTGGT 58.539 45.455 10.16 0.00 0.00 3.67
174 175 3.197265 TCGAGTATGCATGTGATTGGTG 58.803 45.455 10.16 0.00 0.00 4.17
175 176 3.118811 TCGAGTATGCATGTGATTGGTGA 60.119 43.478 10.16 0.00 0.00 4.02
176 177 3.246936 CGAGTATGCATGTGATTGGTGAG 59.753 47.826 10.16 0.00 0.00 3.51
177 178 3.548770 AGTATGCATGTGATTGGTGAGG 58.451 45.455 10.16 0.00 0.00 3.86
178 179 2.812836 ATGCATGTGATTGGTGAGGA 57.187 45.000 0.00 0.00 0.00 3.71
179 180 2.583024 TGCATGTGATTGGTGAGGAA 57.417 45.000 0.00 0.00 0.00 3.36
180 181 2.439409 TGCATGTGATTGGTGAGGAAG 58.561 47.619 0.00 0.00 0.00 3.46
181 182 2.040145 TGCATGTGATTGGTGAGGAAGA 59.960 45.455 0.00 0.00 0.00 2.87
182 183 3.084039 GCATGTGATTGGTGAGGAAGAA 58.916 45.455 0.00 0.00 0.00 2.52
183 184 3.128242 GCATGTGATTGGTGAGGAAGAAG 59.872 47.826 0.00 0.00 0.00 2.85
184 185 4.582869 CATGTGATTGGTGAGGAAGAAGA 58.417 43.478 0.00 0.00 0.00 2.87
185 186 4.277515 TGTGATTGGTGAGGAAGAAGAG 57.722 45.455 0.00 0.00 0.00 2.85
186 187 3.903714 TGTGATTGGTGAGGAAGAAGAGA 59.096 43.478 0.00 0.00 0.00 3.10
187 188 4.347876 TGTGATTGGTGAGGAAGAAGAGAA 59.652 41.667 0.00 0.00 0.00 2.87
188 189 5.163205 TGTGATTGGTGAGGAAGAAGAGAAA 60.163 40.000 0.00 0.00 0.00 2.52
189 190 5.942826 GTGATTGGTGAGGAAGAAGAGAAAT 59.057 40.000 0.00 0.00 0.00 2.17
190 191 7.106239 GTGATTGGTGAGGAAGAAGAGAAATA 58.894 38.462 0.00 0.00 0.00 1.40
191 192 7.607991 GTGATTGGTGAGGAAGAAGAGAAATAA 59.392 37.037 0.00 0.00 0.00 1.40
192 193 8.163408 TGATTGGTGAGGAAGAAGAGAAATAAA 58.837 33.333 0.00 0.00 0.00 1.40
193 194 8.940397 ATTGGTGAGGAAGAAGAGAAATAAAA 57.060 30.769 0.00 0.00 0.00 1.52
194 195 8.760980 TTGGTGAGGAAGAAGAGAAATAAAAA 57.239 30.769 0.00 0.00 0.00 1.94
195 196 8.940397 TGGTGAGGAAGAAGAGAAATAAAAAT 57.060 30.769 0.00 0.00 0.00 1.82
227 228 2.422276 AAAAATGCTTCGTGGTGAGC 57.578 45.000 0.00 0.00 0.00 4.26
228 229 1.609208 AAAATGCTTCGTGGTGAGCT 58.391 45.000 0.00 0.00 0.00 4.09
229 230 0.877071 AAATGCTTCGTGGTGAGCTG 59.123 50.000 0.00 0.00 0.00 4.24
230 231 0.035317 AATGCTTCGTGGTGAGCTGA 59.965 50.000 0.00 0.00 0.00 4.26
231 232 0.035317 ATGCTTCGTGGTGAGCTGAA 59.965 50.000 0.00 0.00 0.00 3.02
232 233 0.035317 TGCTTCGTGGTGAGCTGAAT 59.965 50.000 0.00 0.00 0.00 2.57
233 234 0.723981 GCTTCGTGGTGAGCTGAATC 59.276 55.000 0.00 0.00 0.00 2.52
234 235 0.994995 CTTCGTGGTGAGCTGAATCG 59.005 55.000 0.00 0.00 0.00 3.34
235 236 0.317160 TTCGTGGTGAGCTGAATCGT 59.683 50.000 0.00 0.00 0.00 3.73
236 237 1.170442 TCGTGGTGAGCTGAATCGTA 58.830 50.000 0.00 0.00 0.00 3.43
237 238 1.749063 TCGTGGTGAGCTGAATCGTAT 59.251 47.619 0.00 0.00 0.00 3.06
238 239 1.854743 CGTGGTGAGCTGAATCGTATG 59.145 52.381 0.00 0.00 0.00 2.39
239 240 2.735444 CGTGGTGAGCTGAATCGTATGT 60.735 50.000 0.00 0.00 0.00 2.29
240 241 2.860735 GTGGTGAGCTGAATCGTATGTC 59.139 50.000 0.00 0.00 0.00 3.06
241 242 2.495669 TGGTGAGCTGAATCGTATGTCA 59.504 45.455 0.00 0.00 0.00 3.58
242 243 2.860735 GGTGAGCTGAATCGTATGTCAC 59.139 50.000 0.00 0.00 33.58 3.67
243 244 3.511699 GTGAGCTGAATCGTATGTCACA 58.488 45.455 0.00 0.00 34.33 3.58
244 245 3.549471 GTGAGCTGAATCGTATGTCACAG 59.451 47.826 0.00 0.00 34.33 3.66
245 246 3.443681 TGAGCTGAATCGTATGTCACAGA 59.556 43.478 0.00 0.00 0.00 3.41
246 247 3.775202 AGCTGAATCGTATGTCACAGAC 58.225 45.455 0.00 0.00 0.00 3.51
247 248 3.193479 AGCTGAATCGTATGTCACAGACA 59.807 43.478 2.97 1.95 46.90 3.41
248 249 3.304559 GCTGAATCGTATGTCACAGACAC 59.695 47.826 2.97 0.00 45.65 3.67
249 250 4.485163 CTGAATCGTATGTCACAGACACA 58.515 43.478 2.97 0.00 45.65 3.72
250 251 4.485163 TGAATCGTATGTCACAGACACAG 58.515 43.478 2.97 0.00 45.65 3.66
251 252 4.217550 TGAATCGTATGTCACAGACACAGA 59.782 41.667 2.97 3.24 45.65 3.41
252 253 4.783764 ATCGTATGTCACAGACACAGAA 57.216 40.909 2.97 0.00 45.65 3.02
253 254 4.783764 TCGTATGTCACAGACACAGAAT 57.216 40.909 2.97 0.00 45.65 2.40
254 255 4.733850 TCGTATGTCACAGACACAGAATC 58.266 43.478 2.97 0.00 45.65 2.52
255 256 4.217550 TCGTATGTCACAGACACAGAATCA 59.782 41.667 2.97 0.00 45.65 2.57
256 257 4.324669 CGTATGTCACAGACACAGAATCAC 59.675 45.833 2.97 0.00 45.65 3.06
257 258 4.613925 ATGTCACAGACACAGAATCACT 57.386 40.909 1.43 0.00 45.65 3.41
258 259 4.313282 ATGTCACAGACACAGAATCACTG 58.687 43.478 1.43 0.00 45.65 3.66
259 260 4.039609 ATGTCACAGACACAGAATCACTGA 59.960 41.667 1.43 0.00 45.65 3.41
260 261 6.024049 ATGTCACAGACACAGAATCACTGAC 61.024 44.000 1.43 0.00 45.65 3.51
261 262 8.897891 ATGTCACAGACACAGAATCACTGACC 62.898 46.154 1.43 0.00 45.65 4.02
268 269 2.680312 AGAATCACTGACCGGACATG 57.320 50.000 9.46 9.15 0.00 3.21
269 270 1.009829 GAATCACTGACCGGACATGC 58.990 55.000 9.46 0.00 0.00 4.06
270 271 0.615331 AATCACTGACCGGACATGCT 59.385 50.000 9.46 0.00 0.00 3.79
271 272 0.615331 ATCACTGACCGGACATGCTT 59.385 50.000 9.46 0.00 0.00 3.91
272 273 0.320683 TCACTGACCGGACATGCTTG 60.321 55.000 9.46 3.52 0.00 4.01
273 274 1.003355 ACTGACCGGACATGCTTGG 60.003 57.895 9.46 0.00 0.00 3.61
274 275 1.296392 CTGACCGGACATGCTTGGA 59.704 57.895 9.46 0.00 0.00 3.53
275 276 1.003839 TGACCGGACATGCTTGGAC 60.004 57.895 9.46 0.00 0.00 4.02
276 277 1.003839 GACCGGACATGCTTGGACA 60.004 57.895 9.46 0.00 0.00 4.02
277 278 1.298859 GACCGGACATGCTTGGACAC 61.299 60.000 9.46 0.00 0.00 3.67
278 279 1.003355 CCGGACATGCTTGGACACT 60.003 57.895 0.00 0.00 0.00 3.55
279 280 1.021390 CCGGACATGCTTGGACACTC 61.021 60.000 0.00 0.00 0.00 3.51
280 281 1.021390 CGGACATGCTTGGACACTCC 61.021 60.000 4.44 0.83 36.96 3.85
281 282 0.326264 GGACATGCTTGGACACTCCT 59.674 55.000 4.44 0.00 37.46 3.69
282 283 1.677217 GGACATGCTTGGACACTCCTC 60.677 57.143 4.44 0.00 37.46 3.71
283 284 0.036952 ACATGCTTGGACACTCCTCG 60.037 55.000 4.44 0.00 37.46 4.63
284 285 0.036952 CATGCTTGGACACTCCTCGT 60.037 55.000 0.00 0.00 37.46 4.18
285 286 1.204704 CATGCTTGGACACTCCTCGTA 59.795 52.381 0.00 0.00 37.46 3.43
286 287 0.601558 TGCTTGGACACTCCTCGTAC 59.398 55.000 0.00 0.00 37.46 3.67
287 288 0.889306 GCTTGGACACTCCTCGTACT 59.111 55.000 0.00 0.00 37.46 2.73
288 289 1.135344 GCTTGGACACTCCTCGTACTC 60.135 57.143 0.00 0.00 37.46 2.59
289 290 2.160205 CTTGGACACTCCTCGTACTCA 58.840 52.381 0.00 0.00 37.46 3.41
290 291 2.509166 TGGACACTCCTCGTACTCAT 57.491 50.000 0.00 0.00 37.46 2.90
291 292 2.803956 TGGACACTCCTCGTACTCATT 58.196 47.619 0.00 0.00 37.46 2.57
292 293 3.162666 TGGACACTCCTCGTACTCATTT 58.837 45.455 0.00 0.00 37.46 2.32
293 294 3.192844 TGGACACTCCTCGTACTCATTTC 59.807 47.826 0.00 0.00 37.46 2.17
294 295 3.192844 GGACACTCCTCGTACTCATTTCA 59.807 47.826 0.00 0.00 32.53 2.69
295 296 4.142138 GGACACTCCTCGTACTCATTTCAT 60.142 45.833 0.00 0.00 32.53 2.57
296 297 5.067413 GGACACTCCTCGTACTCATTTCATA 59.933 44.000 0.00 0.00 32.53 2.15
297 298 6.239064 GGACACTCCTCGTACTCATTTCATAT 60.239 42.308 0.00 0.00 32.53 1.78
298 299 7.040617 GGACACTCCTCGTACTCATTTCATATA 60.041 40.741 0.00 0.00 32.53 0.86
299 300 7.649973 ACACTCCTCGTACTCATTTCATATAC 58.350 38.462 0.00 0.00 0.00 1.47
300 301 7.502895 ACACTCCTCGTACTCATTTCATATACT 59.497 37.037 0.00 0.00 0.00 2.12
301 302 8.018520 CACTCCTCGTACTCATTTCATATACTC 58.981 40.741 0.00 0.00 0.00 2.59
302 303 7.940137 ACTCCTCGTACTCATTTCATATACTCT 59.060 37.037 0.00 0.00 0.00 3.24
303 304 8.325421 TCCTCGTACTCATTTCATATACTCTC 57.675 38.462 0.00 0.00 0.00 3.20
304 305 8.158132 TCCTCGTACTCATTTCATATACTCTCT 58.842 37.037 0.00 0.00 0.00 3.10
305 306 8.447833 CCTCGTACTCATTTCATATACTCTCTC 58.552 40.741 0.00 0.00 0.00 3.20
306 307 8.325421 TCGTACTCATTTCATATACTCTCTCC 57.675 38.462 0.00 0.00 0.00 3.71
307 308 7.117956 TCGTACTCATTTCATATACTCTCTCCG 59.882 40.741 0.00 0.00 0.00 4.63
308 309 7.095144 CGTACTCATTTCATATACTCTCTCCGT 60.095 40.741 0.00 0.00 0.00 4.69
309 310 7.589958 ACTCATTTCATATACTCTCTCCGTT 57.410 36.000 0.00 0.00 0.00 4.44
310 311 8.012957 ACTCATTTCATATACTCTCTCCGTTT 57.987 34.615 0.00 0.00 0.00 3.60
311 312 8.478877 ACTCATTTCATATACTCTCTCCGTTTT 58.521 33.333 0.00 0.00 0.00 2.43
312 313 9.319143 CTCATTTCATATACTCTCTCCGTTTTT 57.681 33.333 0.00 0.00 0.00 1.94
336 337 8.962884 TTTAGTCTGCATATAAGATTTGAGCA 57.037 30.769 0.00 0.00 0.00 4.26
337 338 8.962884 TTAGTCTGCATATAAGATTTGAGCAA 57.037 30.769 0.00 0.00 0.00 3.91
338 339 7.870509 AGTCTGCATATAAGATTTGAGCAAA 57.129 32.000 0.00 0.00 34.46 3.68
339 340 7.928103 AGTCTGCATATAAGATTTGAGCAAAG 58.072 34.615 1.92 0.00 33.32 2.77
340 341 7.555554 AGTCTGCATATAAGATTTGAGCAAAGT 59.444 33.333 1.92 0.00 33.32 2.66
341 342 7.854916 GTCTGCATATAAGATTTGAGCAAAGTC 59.145 37.037 1.92 0.95 33.32 3.01
342 343 7.553760 TCTGCATATAAGATTTGAGCAAAGTCA 59.446 33.333 1.92 0.00 33.32 3.41
343 344 8.054152 TGCATATAAGATTTGAGCAAAGTCAA 57.946 30.769 1.92 0.00 34.56 3.18
345 346 8.801913 GCATATAAGATTTGAGCAAAGTCAAAC 58.198 33.333 1.37 0.00 46.53 2.93
506 507 9.895138 ACTTAGTTAAAGTTTAACTCTGACCAA 57.105 29.630 33.68 23.13 46.61 3.67
510 511 9.628500 AGTTAAAGTTTAACTCTGACCAAATCT 57.372 29.630 27.81 8.24 32.82 2.40
511 512 9.880064 GTTAAAGTTTAACTCTGACCAAATCTC 57.120 33.333 24.86 0.00 0.00 2.75
512 513 9.621629 TTAAAGTTTAACTCTGACCAAATCTCA 57.378 29.630 3.88 0.00 0.00 3.27
513 514 8.697507 AAAGTTTAACTCTGACCAAATCTCAT 57.302 30.769 0.00 0.00 0.00 2.90
514 515 9.793259 AAAGTTTAACTCTGACCAAATCTCATA 57.207 29.630 0.00 0.00 0.00 2.15
515 516 9.965902 AAGTTTAACTCTGACCAAATCTCATAT 57.034 29.630 0.00 0.00 0.00 1.78
520 521 7.904558 ACTCTGACCAAATCTCATATACAGA 57.095 36.000 0.00 0.00 0.00 3.41
522 523 7.904558 TCTGACCAAATCTCATATACAGAGT 57.095 36.000 0.00 0.00 34.73 3.24
523 524 8.996651 TCTGACCAAATCTCATATACAGAGTA 57.003 34.615 0.00 0.00 34.73 2.59
524 525 9.421399 TCTGACCAAATCTCATATACAGAGTAA 57.579 33.333 0.00 0.00 34.73 2.24
534 535 9.392259 TCTCATATACAGAGTAAAAAGAGACGA 57.608 33.333 0.00 0.00 34.73 4.20
537 538 9.239002 CATATACAGAGTAAAAAGAGACGAAGG 57.761 37.037 0.00 0.00 0.00 3.46
538 539 4.884247 ACAGAGTAAAAAGAGACGAAGGG 58.116 43.478 0.00 0.00 0.00 3.95
539 540 4.587684 ACAGAGTAAAAAGAGACGAAGGGA 59.412 41.667 0.00 0.00 0.00 4.20
540 541 5.164954 CAGAGTAAAAAGAGACGAAGGGAG 58.835 45.833 0.00 0.00 0.00 4.30
541 542 4.833938 AGAGTAAAAAGAGACGAAGGGAGT 59.166 41.667 0.00 0.00 0.00 3.85
542 543 6.008960 AGAGTAAAAAGAGACGAAGGGAGTA 58.991 40.000 0.00 0.00 0.00 2.59
543 544 6.664384 AGAGTAAAAAGAGACGAAGGGAGTAT 59.336 38.462 0.00 0.00 0.00 2.12
544 545 6.631962 AGTAAAAAGAGACGAAGGGAGTATG 58.368 40.000 0.00 0.00 0.00 2.39
545 546 5.740290 AAAAAGAGACGAAGGGAGTATGA 57.260 39.130 0.00 0.00 0.00 2.15
546 547 4.993029 AAAGAGACGAAGGGAGTATGAG 57.007 45.455 0.00 0.00 0.00 2.90
547 548 2.938838 AGAGACGAAGGGAGTATGAGG 58.061 52.381 0.00 0.00 0.00 3.86
548 549 1.957877 GAGACGAAGGGAGTATGAGGG 59.042 57.143 0.00 0.00 0.00 4.30
549 550 0.389757 GACGAAGGGAGTATGAGGGC 59.610 60.000 0.00 0.00 0.00 5.19
550 551 0.325296 ACGAAGGGAGTATGAGGGCA 60.325 55.000 0.00 0.00 0.00 5.36
551 552 0.830648 CGAAGGGAGTATGAGGGCAA 59.169 55.000 0.00 0.00 0.00 4.52
552 553 1.417890 CGAAGGGAGTATGAGGGCAAT 59.582 52.381 0.00 0.00 0.00 3.56
553 554 2.632996 CGAAGGGAGTATGAGGGCAATA 59.367 50.000 0.00 0.00 0.00 1.90
554 555 3.261897 CGAAGGGAGTATGAGGGCAATAT 59.738 47.826 0.00 0.00 0.00 1.28
555 556 4.583871 GAAGGGAGTATGAGGGCAATATG 58.416 47.826 0.00 0.00 0.00 1.78
556 557 3.874316 AGGGAGTATGAGGGCAATATGA 58.126 45.455 0.00 0.00 0.00 2.15
557 558 3.843027 AGGGAGTATGAGGGCAATATGAG 59.157 47.826 0.00 0.00 0.00 2.90
558 559 3.054802 GGGAGTATGAGGGCAATATGAGG 60.055 52.174 0.00 0.00 0.00 3.86
559 560 3.054802 GGAGTATGAGGGCAATATGAGGG 60.055 52.174 0.00 0.00 0.00 4.30
560 561 2.915604 AGTATGAGGGCAATATGAGGGG 59.084 50.000 0.00 0.00 0.00 4.79
561 562 1.838611 ATGAGGGCAATATGAGGGGT 58.161 50.000 0.00 0.00 0.00 4.95
562 563 0.846015 TGAGGGCAATATGAGGGGTG 59.154 55.000 0.00 0.00 0.00 4.61
563 564 0.538287 GAGGGCAATATGAGGGGTGC 60.538 60.000 0.00 0.00 36.24 5.01
566 567 2.724520 GCAATATGAGGGGTGCCAG 58.275 57.895 0.00 0.00 0.00 4.85
567 568 0.825010 GCAATATGAGGGGTGCCAGG 60.825 60.000 0.00 0.00 0.00 4.45
568 569 0.825010 CAATATGAGGGGTGCCAGGC 60.825 60.000 3.66 3.66 0.00 4.85
569 570 1.288508 AATATGAGGGGTGCCAGGCA 61.289 55.000 11.22 11.22 35.60 4.75
570 571 1.288508 ATATGAGGGGTGCCAGGCAA 61.289 55.000 18.28 0.00 41.47 4.52
571 572 1.288508 TATGAGGGGTGCCAGGCAAT 61.289 55.000 18.28 7.56 41.47 3.56
572 573 1.288508 ATGAGGGGTGCCAGGCAATA 61.289 55.000 18.28 0.00 41.47 1.90
573 574 1.306296 GAGGGGTGCCAGGCAATAA 59.694 57.895 18.28 0.00 41.47 1.40
574 575 0.106015 GAGGGGTGCCAGGCAATAAT 60.106 55.000 18.28 2.44 41.47 1.28
575 576 1.144913 GAGGGGTGCCAGGCAATAATA 59.855 52.381 18.28 0.00 41.47 0.98
576 577 1.573376 AGGGGTGCCAGGCAATAATAA 59.427 47.619 18.28 0.00 41.47 1.40
577 578 2.023501 AGGGGTGCCAGGCAATAATAAA 60.024 45.455 18.28 0.00 41.47 1.40
578 579 2.769095 GGGGTGCCAGGCAATAATAAAA 59.231 45.455 18.28 0.00 41.47 1.52
579 580 3.198853 GGGGTGCCAGGCAATAATAAAAA 59.801 43.478 18.28 0.00 41.47 1.94
580 581 4.188462 GGGTGCCAGGCAATAATAAAAAC 58.812 43.478 18.28 0.00 41.47 2.43
581 582 4.323104 GGGTGCCAGGCAATAATAAAAACA 60.323 41.667 18.28 0.00 41.47 2.83
582 583 5.427378 GGTGCCAGGCAATAATAAAAACAT 58.573 37.500 18.28 0.00 41.47 2.71
583 584 5.879777 GGTGCCAGGCAATAATAAAAACATT 59.120 36.000 18.28 0.00 41.47 2.71
584 585 6.374053 GGTGCCAGGCAATAATAAAAACATTT 59.626 34.615 18.28 0.00 41.47 2.32
585 586 7.550906 GGTGCCAGGCAATAATAAAAACATTTA 59.449 33.333 18.28 0.00 41.47 1.40
586 587 8.940952 GTGCCAGGCAATAATAAAAACATTTAA 58.059 29.630 18.28 0.00 41.47 1.52
587 588 9.160496 TGCCAGGCAATAATAAAAACATTTAAG 57.840 29.630 13.33 0.00 34.76 1.85
588 589 8.611757 GCCAGGCAATAATAAAAACATTTAAGG 58.388 33.333 6.55 0.00 0.00 2.69
589 590 9.883142 CCAGGCAATAATAAAAACATTTAAGGA 57.117 29.630 0.00 0.00 0.00 3.36
592 593 8.826710 GGCAATAATAAAAACATTTAAGGAGGC 58.173 33.333 0.00 0.00 0.00 4.70
593 594 9.599866 GCAATAATAAAAACATTTAAGGAGGCT 57.400 29.630 0.00 0.00 0.00 4.58
598 599 9.710900 AATAAAAACATTTAAGGAGGCTTTGAG 57.289 29.630 0.00 0.00 0.00 3.02
599 600 6.976934 AAAACATTTAAGGAGGCTTTGAGA 57.023 33.333 0.00 0.00 0.00 3.27
600 601 6.581171 AAACATTTAAGGAGGCTTTGAGAG 57.419 37.500 0.00 0.00 0.00 3.20
601 602 4.593956 ACATTTAAGGAGGCTTTGAGAGG 58.406 43.478 0.00 0.00 0.00 3.69
602 603 4.043435 ACATTTAAGGAGGCTTTGAGAGGT 59.957 41.667 0.00 0.00 0.00 3.85
603 604 4.724279 TTTAAGGAGGCTTTGAGAGGTT 57.276 40.909 0.00 0.00 0.00 3.50
604 605 4.724279 TTAAGGAGGCTTTGAGAGGTTT 57.276 40.909 0.00 0.00 0.00 3.27
605 606 2.575805 AGGAGGCTTTGAGAGGTTTG 57.424 50.000 0.00 0.00 0.00 2.93
606 607 1.074566 AGGAGGCTTTGAGAGGTTTGG 59.925 52.381 0.00 0.00 0.00 3.28
607 608 1.202940 GGAGGCTTTGAGAGGTTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
608 609 2.587522 GAGGCTTTGAGAGGTTTGGTT 58.412 47.619 0.00 0.00 0.00 3.67
609 610 3.497942 GGAGGCTTTGAGAGGTTTGGTTA 60.498 47.826 0.00 0.00 0.00 2.85
610 611 3.753797 GAGGCTTTGAGAGGTTTGGTTAG 59.246 47.826 0.00 0.00 0.00 2.34
611 612 3.394606 AGGCTTTGAGAGGTTTGGTTAGA 59.605 43.478 0.00 0.00 0.00 2.10
612 613 4.043435 AGGCTTTGAGAGGTTTGGTTAGAT 59.957 41.667 0.00 0.00 0.00 1.98
613 614 4.396478 GGCTTTGAGAGGTTTGGTTAGATC 59.604 45.833 0.00 0.00 0.00 2.75
614 615 5.003804 GCTTTGAGAGGTTTGGTTAGATCA 58.996 41.667 0.00 0.00 0.00 2.92
615 616 5.473504 GCTTTGAGAGGTTTGGTTAGATCAA 59.526 40.000 0.00 0.00 0.00 2.57
616 617 6.151817 GCTTTGAGAGGTTTGGTTAGATCAAT 59.848 38.462 0.00 0.00 0.00 2.57
617 618 7.627300 GCTTTGAGAGGTTTGGTTAGATCAATC 60.627 40.741 0.00 0.00 0.00 2.67
618 619 6.373005 TGAGAGGTTTGGTTAGATCAATCA 57.627 37.500 0.00 0.00 0.00 2.57
619 620 6.962182 TGAGAGGTTTGGTTAGATCAATCAT 58.038 36.000 0.00 0.00 0.00 2.45
620 621 7.405292 TGAGAGGTTTGGTTAGATCAATCATT 58.595 34.615 0.00 0.00 0.00 2.57
621 622 7.890127 TGAGAGGTTTGGTTAGATCAATCATTT 59.110 33.333 0.00 0.00 0.00 2.32
622 623 9.396022 GAGAGGTTTGGTTAGATCAATCATTTA 57.604 33.333 0.00 0.00 0.00 1.40
623 624 9.401058 AGAGGTTTGGTTAGATCAATCATTTAG 57.599 33.333 0.00 0.00 0.00 1.85
624 625 9.178758 GAGGTTTGGTTAGATCAATCATTTAGT 57.821 33.333 0.00 0.00 0.00 2.24
625 626 9.533831 AGGTTTGGTTAGATCAATCATTTAGTT 57.466 29.630 0.00 0.00 0.00 2.24
630 631 9.739276 TGGTTAGATCAATCATTTAGTTTGTCT 57.261 29.630 0.00 0.00 0.00 3.41
631 632 9.994432 GGTTAGATCAATCATTTAGTTTGTCTG 57.006 33.333 0.00 0.00 0.00 3.51
632 633 9.994432 GTTAGATCAATCATTTAGTTTGTCTGG 57.006 33.333 0.00 0.00 0.00 3.86
633 634 9.739276 TTAGATCAATCATTTAGTTTGTCTGGT 57.261 29.630 0.00 0.00 0.00 4.00
634 635 8.641498 AGATCAATCATTTAGTTTGTCTGGTT 57.359 30.769 0.00 0.00 0.00 3.67
635 636 9.739276 AGATCAATCATTTAGTTTGTCTGGTTA 57.261 29.630 0.00 0.00 0.00 2.85
639 640 9.357652 CAATCATTTAGTTTGTCTGGTTAATGG 57.642 33.333 0.00 0.00 0.00 3.16
640 641 6.919721 TCATTTAGTTTGTCTGGTTAATGGC 58.080 36.000 0.00 0.00 0.00 4.40
641 642 6.719370 TCATTTAGTTTGTCTGGTTAATGGCT 59.281 34.615 0.00 0.00 0.00 4.75
642 643 6.569179 TTTAGTTTGTCTGGTTAATGGCTC 57.431 37.500 0.00 0.00 0.00 4.70
643 644 4.373156 AGTTTGTCTGGTTAATGGCTCT 57.627 40.909 0.00 0.00 0.00 4.09
644 645 4.074970 AGTTTGTCTGGTTAATGGCTCTG 58.925 43.478 0.00 0.00 0.00 3.35
645 646 2.113860 TGTCTGGTTAATGGCTCTGC 57.886 50.000 0.00 0.00 0.00 4.26
646 647 1.009829 GTCTGGTTAATGGCTCTGCG 58.990 55.000 0.00 0.00 0.00 5.18
647 648 0.613260 TCTGGTTAATGGCTCTGCGT 59.387 50.000 0.00 0.00 0.00 5.24
648 649 1.003118 TCTGGTTAATGGCTCTGCGTT 59.997 47.619 0.00 0.00 0.00 4.84
649 650 1.398390 CTGGTTAATGGCTCTGCGTTC 59.602 52.381 0.00 0.00 0.00 3.95
650 651 1.003118 TGGTTAATGGCTCTGCGTTCT 59.997 47.619 0.00 0.00 0.00 3.01
651 652 1.398390 GGTTAATGGCTCTGCGTTCTG 59.602 52.381 0.00 0.00 0.00 3.02
652 653 2.346803 GTTAATGGCTCTGCGTTCTGA 58.653 47.619 0.00 0.00 0.00 3.27
653 654 2.939103 GTTAATGGCTCTGCGTTCTGAT 59.061 45.455 0.00 0.00 0.00 2.90
654 655 1.661341 AATGGCTCTGCGTTCTGATC 58.339 50.000 0.00 0.00 0.00 2.92
655 656 0.538584 ATGGCTCTGCGTTCTGATCA 59.461 50.000 0.00 0.00 0.00 2.92
656 657 0.321346 TGGCTCTGCGTTCTGATCAA 59.679 50.000 0.00 0.00 0.00 2.57
657 658 1.065926 TGGCTCTGCGTTCTGATCAAT 60.066 47.619 0.00 0.00 0.00 2.57
658 659 2.012673 GGCTCTGCGTTCTGATCAATT 58.987 47.619 0.00 0.00 0.00 2.32
659 660 2.421424 GGCTCTGCGTTCTGATCAATTT 59.579 45.455 0.00 0.00 0.00 1.82
660 661 3.423571 GCTCTGCGTTCTGATCAATTTG 58.576 45.455 0.00 0.00 0.00 2.32
661 662 3.125829 GCTCTGCGTTCTGATCAATTTGA 59.874 43.478 0.75 0.75 0.00 2.69
662 663 4.727162 GCTCTGCGTTCTGATCAATTTGAG 60.727 45.833 5.21 0.29 0.00 3.02
663 664 3.686241 TCTGCGTTCTGATCAATTTGAGG 59.314 43.478 5.21 0.00 0.00 3.86
664 665 3.673902 TGCGTTCTGATCAATTTGAGGA 58.326 40.909 5.21 1.13 0.00 3.71
665 666 3.686241 TGCGTTCTGATCAATTTGAGGAG 59.314 43.478 5.21 3.60 0.00 3.69
666 667 3.486542 GCGTTCTGATCAATTTGAGGAGC 60.487 47.826 5.21 4.89 0.00 4.70
667 668 3.064545 CGTTCTGATCAATTTGAGGAGCC 59.935 47.826 5.21 0.00 0.00 4.70
668 669 3.287867 TCTGATCAATTTGAGGAGCCC 57.712 47.619 5.21 0.00 0.00 5.19
669 670 1.945394 CTGATCAATTTGAGGAGCCCG 59.055 52.381 5.21 0.00 0.00 6.13
670 671 0.665298 GATCAATTTGAGGAGCCCGC 59.335 55.000 5.21 0.00 0.00 6.13
671 672 0.257039 ATCAATTTGAGGAGCCCGCT 59.743 50.000 5.21 0.00 0.00 5.52
672 673 0.038166 TCAATTTGAGGAGCCCGCTT 59.962 50.000 0.00 0.00 0.00 4.68
673 674 1.280710 TCAATTTGAGGAGCCCGCTTA 59.719 47.619 0.00 0.00 0.00 3.09
674 675 1.401905 CAATTTGAGGAGCCCGCTTAC 59.598 52.381 0.00 0.00 0.00 2.34
680 681 1.227674 GGAGCCCGCTTACAGATGG 60.228 63.158 0.00 0.00 0.00 3.51
682 683 0.107654 GAGCCCGCTTACAGATGGTT 60.108 55.000 0.00 0.00 0.00 3.67
694 695 7.415318 CGCTTACAGATGGTTTTACTCTCTCTA 60.415 40.741 0.00 0.00 0.00 2.43
727 728 5.665459 ACTCGTGGGAGAGAAATTGATAAG 58.335 41.667 0.62 0.00 43.27 1.73
728 729 5.023533 TCGTGGGAGAGAAATTGATAAGG 57.976 43.478 0.00 0.00 0.00 2.69
732 733 5.240403 GTGGGAGAGAAATTGATAAGGCATC 59.760 44.000 0.00 0.00 0.00 3.91
733 734 5.133322 TGGGAGAGAAATTGATAAGGCATCT 59.867 40.000 0.00 0.00 34.46 2.90
744 745 4.988540 TGATAAGGCATCTATTTTCCGACG 59.011 41.667 0.00 0.00 34.46 5.12
752 753 6.018180 GGCATCTATTTTCCGACGAGTATTTT 60.018 38.462 0.00 0.00 0.00 1.82
753 754 7.064064 GCATCTATTTTCCGACGAGTATTTTC 58.936 38.462 0.00 0.00 0.00 2.29
754 755 7.564988 CATCTATTTTCCGACGAGTATTTTCC 58.435 38.462 0.00 0.00 0.00 3.13
756 757 1.632422 TTCCGACGAGTATTTTCCGC 58.368 50.000 0.00 0.00 0.00 5.54
787 788 9.023962 AGGATGAGATTTTTGTGCAAAATAGTA 57.976 29.630 10.39 0.00 39.69 1.82
889 895 0.792356 GACTTGCGACGACGACTACC 60.792 60.000 12.29 0.00 42.66 3.18
1128 1445 4.843331 ATCCTGATGGGGGCCGGT 62.843 66.667 1.90 0.00 35.33 5.28
1386 1742 6.432472 CCATCTTCTTGTTTTAGGAGCTTTCT 59.568 38.462 0.00 0.00 0.00 2.52
1387 1743 7.607991 CCATCTTCTTGTTTTAGGAGCTTTCTA 59.392 37.037 0.00 0.00 0.00 2.10
1404 1766 7.542025 AGCTTTCTATTTGATTTGTTAGGCAG 58.458 34.615 0.00 0.00 0.00 4.85
1712 2674 3.124560 GCGCTAGAGAAAACCTATCACC 58.875 50.000 0.00 0.00 0.00 4.02
1726 2688 0.179084 ATCACCGTGCATTACTCCGG 60.179 55.000 9.41 9.41 45.72 5.14
1736 2725 2.805657 GCATTACTCCGGACACCATACC 60.806 54.545 0.00 0.00 0.00 2.73
1877 2988 6.063640 TGCAATAATTGGATGATTCTGACG 57.936 37.500 0.00 0.00 0.00 4.35
1937 3055 0.909610 TTAGCCACCCTCTGGTCTGG 60.910 60.000 0.00 0.00 45.57 3.86
1994 3139 1.185315 CCTTTGTGCCCACCCTATTG 58.815 55.000 0.00 0.00 0.00 1.90
2031 3176 3.922171 TTCCAGCCAACCAAAAATTGT 57.078 38.095 0.00 0.00 0.00 2.71
2262 3451 2.904697 TCATATGCTGGAGTGCAGAG 57.095 50.000 16.83 0.00 46.71 3.35
2331 3523 6.427547 GCATCCCTGAAATTTTTGTCAAATCA 59.572 34.615 0.00 0.00 0.00 2.57
2375 3577 8.429641 TGAATTGTCACTAGACCTCTTTAAGTT 58.570 33.333 0.00 0.00 44.33 2.66
2376 3578 9.924650 GAATTGTCACTAGACCTCTTTAAGTTA 57.075 33.333 0.00 0.00 44.33 2.24
2378 3580 9.877178 ATTGTCACTAGACCTCTTTAAGTTATG 57.123 33.333 0.00 0.00 44.33 1.90
2443 3651 3.398406 TGTTCTATTCGTGCTCTGCAAA 58.602 40.909 0.00 0.00 41.47 3.68
2603 3849 8.721478 GCCTCATTTCTCGCTATAATTTTGATA 58.279 33.333 0.00 0.00 0.00 2.15
2725 3971 1.412079 AAGCATGCCCACAACTGAAA 58.588 45.000 15.66 0.00 0.00 2.69
2879 4125 1.451028 GGACTGACAGCCATCCTGC 60.451 63.158 1.25 0.00 45.78 4.85
2971 4217 4.870426 CGTGCAAAGTGTGATAGGATAAGT 59.130 41.667 0.00 0.00 0.00 2.24
3008 4254 4.943705 TCCTGCCAAGATTAAGTGATGTTC 59.056 41.667 0.00 0.00 0.00 3.18
3109 4487 3.563223 CCAGGATGATCTTTCTGCCATT 58.437 45.455 10.78 0.00 39.69 3.16
3140 4518 3.365364 GGTGTGCAAGCTAAGTGATGTTC 60.365 47.826 0.00 0.00 0.00 3.18
3847 5226 0.036388 GAACTGCGATTGGGGAGACA 60.036 55.000 0.00 0.00 0.00 3.41
4017 5396 2.111384 ACTGTCACAGTCAGGAACACT 58.889 47.619 3.98 0.00 41.21 3.55
4032 5411 1.221414 ACACTGCGAGCAAGAGAAAC 58.779 50.000 0.00 0.00 0.00 2.78
4046 5433 1.947456 GAGAAACGGTCTGCCACTTTT 59.053 47.619 0.00 0.00 36.41 2.27
4277 5757 2.032799 TGTTTGTTGTTGAGATGGCGTC 59.967 45.455 0.00 0.00 0.00 5.19
4316 5796 5.051891 ACATATCTTTTGTGCAGCTTGTC 57.948 39.130 0.00 0.00 0.00 3.18
4391 5872 2.923605 GCACTGGTTTACTGCTTGCATG 60.924 50.000 0.00 0.00 0.00 4.06
4448 6887 1.552348 CGATTGTAGGCTAGCAGCGC 61.552 60.000 18.24 0.00 43.62 5.92
4454 6893 0.598562 TAGGCTAGCAGCGCTGTATC 59.401 55.000 35.80 21.02 43.62 2.24
4515 6965 1.612950 TGGCTTTTGTGATGCGTTGAT 59.387 42.857 0.00 0.00 0.00 2.57
4563 7013 5.216648 GTTATGCAGTACTAGTAGCTCAGC 58.783 45.833 13.50 7.34 0.00 4.26
4578 7028 2.755655 GCTCAGCAGTCTACCTCAGTTA 59.244 50.000 0.00 0.00 0.00 2.24
4608 7058 5.610398 TCTGATTGCACAGACTGTTTTCTA 58.390 37.500 5.04 0.00 41.21 2.10
4675 7126 1.550327 TCTGGTTCAGCGAGACAGAT 58.450 50.000 0.00 0.00 33.62 2.90
4728 7180 4.795970 CCTCGAAGGGAAAATGTAATCG 57.204 45.455 0.00 0.00 0.00 3.34
4731 7183 3.372822 TCGAAGGGAAAATGTAATCGTGC 59.627 43.478 0.00 0.00 0.00 5.34
4787 7239 0.671251 TTTCTTCGGCGGCAAACATT 59.329 45.000 10.53 0.00 0.00 2.71
4859 7312 3.555139 GTGATCTTTCTGCCATCGAGAAG 59.445 47.826 0.00 0.00 31.17 2.85
4893 7346 9.075519 GCAAATTAATCGATGATTTGAGAAACA 57.924 29.630 31.42 0.19 41.14 2.83
4930 7383 1.426816 CGCGAATGCAGATGCTGTCT 61.427 55.000 0.00 0.00 42.97 3.41
4936 7389 2.904697 TGCAGATGCTGTCTATCCAG 57.095 50.000 6.35 0.00 42.66 3.86
4954 7407 2.174210 CCAGTCATCCATGTCTTGGGAT 59.826 50.000 4.99 0.00 46.45 3.85
4955 7408 3.392285 CCAGTCATCCATGTCTTGGGATA 59.608 47.826 4.99 0.00 46.45 2.59
4956 7409 4.042560 CCAGTCATCCATGTCTTGGGATAT 59.957 45.833 4.99 0.00 46.45 1.63
4957 7410 5.457197 CCAGTCATCCATGTCTTGGGATATT 60.457 44.000 4.99 0.00 46.45 1.28
4958 7411 5.472478 CAGTCATCCATGTCTTGGGATATTG 59.528 44.000 4.99 0.00 46.45 1.90
4970 7423 7.340232 TGTCTTGGGATATTGAAAGAGAATTGG 59.660 37.037 0.00 0.00 29.64 3.16
4989 7442 0.657368 GGCGTCTGCTTTGTTGTTCG 60.657 55.000 0.00 0.00 42.25 3.95
5035 7488 0.385390 GCATTCCCCTTGCCATTACG 59.615 55.000 0.00 0.00 33.95 3.18
5050 7503 4.920376 CCATTACGGGCTTAACAGAAATG 58.080 43.478 0.00 0.00 0.00 2.32
5051 7504 4.202010 CCATTACGGGCTTAACAGAAATGG 60.202 45.833 0.00 0.00 37.03 3.16
5052 7505 2.871096 ACGGGCTTAACAGAAATGGA 57.129 45.000 0.00 0.00 0.00 3.41
5053 7506 2.711542 ACGGGCTTAACAGAAATGGAG 58.288 47.619 0.00 0.00 0.00 3.86
5054 7507 2.039879 ACGGGCTTAACAGAAATGGAGT 59.960 45.455 0.00 0.00 0.00 3.85
5133 8590 1.187567 GGTGCATTGCCAGGAAACCT 61.188 55.000 6.12 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.521681 GTGTCTAGGCATGCGACCC 60.522 63.158 17.94 6.39 0.00 4.46
10 11 0.323302 TTTGGTGTCTAGGCATGCGA 59.677 50.000 12.44 0.00 0.00 5.10
11 12 0.729116 CTTTGGTGTCTAGGCATGCG 59.271 55.000 12.44 0.00 0.00 4.73
12 13 1.740025 GACTTTGGTGTCTAGGCATGC 59.260 52.381 9.90 9.90 34.39 4.06
13 14 2.002586 CGACTTTGGTGTCTAGGCATG 58.997 52.381 0.00 0.00 35.00 4.06
14 15 1.899814 TCGACTTTGGTGTCTAGGCAT 59.100 47.619 0.00 0.00 35.00 4.40
15 16 1.000506 GTCGACTTTGGTGTCTAGGCA 59.999 52.381 8.70 0.00 35.00 4.75
16 17 1.672145 GGTCGACTTTGGTGTCTAGGC 60.672 57.143 16.46 0.00 35.00 3.93
17 18 1.616865 TGGTCGACTTTGGTGTCTAGG 59.383 52.381 16.46 0.00 35.00 3.02
18 19 3.005472 TCTTGGTCGACTTTGGTGTCTAG 59.995 47.826 16.46 2.66 35.00 2.43
19 20 2.960384 TCTTGGTCGACTTTGGTGTCTA 59.040 45.455 16.46 0.00 35.00 2.59
20 21 1.760613 TCTTGGTCGACTTTGGTGTCT 59.239 47.619 16.46 0.00 35.00 3.41
21 22 2.234300 TCTTGGTCGACTTTGGTGTC 57.766 50.000 16.46 0.00 0.00 3.67
22 23 2.767505 GATCTTGGTCGACTTTGGTGT 58.232 47.619 16.46 0.00 0.00 4.16
23 24 1.726791 CGATCTTGGTCGACTTTGGTG 59.273 52.381 16.46 0.78 44.06 4.17
24 25 1.337823 CCGATCTTGGTCGACTTTGGT 60.338 52.381 16.46 1.50 44.06 3.67
25 26 1.359848 CCGATCTTGGTCGACTTTGG 58.640 55.000 16.46 5.37 44.06 3.28
26 27 0.721718 GCCGATCTTGGTCGACTTTG 59.278 55.000 16.46 5.75 44.06 2.77
27 28 0.320374 TGCCGATCTTGGTCGACTTT 59.680 50.000 16.46 0.00 44.06 2.66
28 29 0.389948 GTGCCGATCTTGGTCGACTT 60.390 55.000 16.46 0.00 44.06 3.01
29 30 1.215647 GTGCCGATCTTGGTCGACT 59.784 57.895 16.46 0.00 44.06 4.18
30 31 1.080093 TGTGCCGATCTTGGTCGAC 60.080 57.895 7.13 7.13 44.06 4.20
31 32 1.080093 GTGTGCCGATCTTGGTCGA 60.080 57.895 4.73 0.00 44.06 4.20
32 33 2.100631 GGTGTGCCGATCTTGGTCG 61.101 63.158 0.00 0.00 41.13 4.79
33 34 3.890674 GGTGTGCCGATCTTGGTC 58.109 61.111 0.00 0.00 0.00 4.02
56 57 3.909732 TCATCCTTGGTCACCACTTTTT 58.090 40.909 0.00 0.00 30.78 1.94
57 58 3.593442 TCATCCTTGGTCACCACTTTT 57.407 42.857 0.00 0.00 30.78 2.27
58 59 3.424703 CATCATCCTTGGTCACCACTTT 58.575 45.455 0.00 0.00 30.78 2.66
59 60 2.291153 CCATCATCCTTGGTCACCACTT 60.291 50.000 0.00 0.00 30.78 3.16
60 61 1.283029 CCATCATCCTTGGTCACCACT 59.717 52.381 0.00 0.00 30.78 4.00
61 62 1.683011 CCCATCATCCTTGGTCACCAC 60.683 57.143 0.00 0.00 30.78 4.16
62 63 0.625316 CCCATCATCCTTGGTCACCA 59.375 55.000 0.00 0.00 31.99 4.17
63 64 0.753111 GCCCATCATCCTTGGTCACC 60.753 60.000 0.00 0.00 31.99 4.02
64 65 0.753111 GGCCCATCATCCTTGGTCAC 60.753 60.000 0.00 0.00 31.99 3.67
65 66 1.614711 GGCCCATCATCCTTGGTCA 59.385 57.895 0.00 0.00 31.99 4.02
66 67 1.526917 CGGCCCATCATCCTTGGTC 60.527 63.158 0.00 0.00 31.99 4.02
67 68 2.597340 CGGCCCATCATCCTTGGT 59.403 61.111 0.00 0.00 31.99 3.67
68 69 2.203394 CCGGCCCATCATCCTTGG 60.203 66.667 0.00 0.00 0.00 3.61
69 70 2.908940 GCCGGCCCATCATCCTTG 60.909 66.667 18.11 0.00 0.00 3.61
70 71 4.209866 GGCCGGCCCATCATCCTT 62.210 66.667 36.64 0.00 0.00 3.36
72 73 4.650377 GAGGCCGGCCCATCATCC 62.650 72.222 41.72 17.75 36.58 3.51
73 74 4.996434 CGAGGCCGGCCCATCATC 62.996 72.222 41.72 29.53 36.58 2.92
92 93 1.470996 TTGTTCCATGGCCACCTTGC 61.471 55.000 8.16 0.00 0.00 4.01
93 94 1.066716 CATTGTTCCATGGCCACCTTG 60.067 52.381 8.16 1.63 0.00 3.61
94 95 1.269012 CATTGTTCCATGGCCACCTT 58.731 50.000 8.16 0.00 0.00 3.50
95 96 1.259840 GCATTGTTCCATGGCCACCT 61.260 55.000 8.16 0.00 0.00 4.00
96 97 1.218854 GCATTGTTCCATGGCCACC 59.781 57.895 8.16 0.00 0.00 4.61
97 98 0.108520 CTGCATTGTTCCATGGCCAC 60.109 55.000 8.16 6.92 0.00 5.01
98 99 0.251698 TCTGCATTGTTCCATGGCCA 60.252 50.000 8.56 8.56 0.00 5.36
99 100 0.458669 CTCTGCATTGTTCCATGGCC 59.541 55.000 6.96 0.00 0.00 5.36
100 101 0.458669 CCTCTGCATTGTTCCATGGC 59.541 55.000 6.96 0.00 0.00 4.40
101 102 1.475280 CACCTCTGCATTGTTCCATGG 59.525 52.381 4.97 4.97 0.00 3.66
102 103 2.163010 GACACCTCTGCATTGTTCCATG 59.837 50.000 0.00 0.00 0.00 3.66
103 104 2.224843 TGACACCTCTGCATTGTTCCAT 60.225 45.455 0.00 0.00 0.00 3.41
104 105 1.142667 TGACACCTCTGCATTGTTCCA 59.857 47.619 0.00 0.00 0.00 3.53
105 106 1.808945 CTGACACCTCTGCATTGTTCC 59.191 52.381 0.00 0.00 0.00 3.62
106 107 1.808945 CCTGACACCTCTGCATTGTTC 59.191 52.381 0.00 0.00 0.00 3.18
107 108 1.546323 CCCTGACACCTCTGCATTGTT 60.546 52.381 0.00 0.00 0.00 2.83
108 109 0.037303 CCCTGACACCTCTGCATTGT 59.963 55.000 0.00 0.00 0.00 2.71
109 110 0.325933 TCCCTGACACCTCTGCATTG 59.674 55.000 0.00 0.00 0.00 2.82
110 111 0.326264 GTCCCTGACACCTCTGCATT 59.674 55.000 0.00 0.00 32.09 3.56
111 112 1.892819 CGTCCCTGACACCTCTGCAT 61.893 60.000 0.00 0.00 32.09 3.96
112 113 2.574018 CGTCCCTGACACCTCTGCA 61.574 63.158 0.00 0.00 32.09 4.41
113 114 2.262915 CGTCCCTGACACCTCTGC 59.737 66.667 0.00 0.00 32.09 4.26
114 115 2.650116 CCCGTCCCTGACACCTCTG 61.650 68.421 0.00 0.00 32.09 3.35
115 116 2.283966 CCCGTCCCTGACACCTCT 60.284 66.667 0.00 0.00 32.09 3.69
116 117 3.391382 CCCCGTCCCTGACACCTC 61.391 72.222 0.00 0.00 32.09 3.85
119 120 4.394712 CTGCCCCGTCCCTGACAC 62.395 72.222 0.00 0.00 32.09 3.67
122 123 2.833151 AATACCTGCCCCGTCCCTGA 62.833 60.000 0.00 0.00 0.00 3.86
123 124 2.375345 AATACCTGCCCCGTCCCTG 61.375 63.158 0.00 0.00 0.00 4.45
124 125 2.042261 AATACCTGCCCCGTCCCT 59.958 61.111 0.00 0.00 0.00 4.20
125 126 2.192175 CAATACCTGCCCCGTCCC 59.808 66.667 0.00 0.00 0.00 4.46
126 127 2.192175 CCAATACCTGCCCCGTCC 59.808 66.667 0.00 0.00 0.00 4.79
127 128 2.516225 GCCAATACCTGCCCCGTC 60.516 66.667 0.00 0.00 0.00 4.79
128 129 4.483243 CGCCAATACCTGCCCCGT 62.483 66.667 0.00 0.00 0.00 5.28
129 130 4.169696 TCGCCAATACCTGCCCCG 62.170 66.667 0.00 0.00 0.00 5.73
130 131 2.203209 CTCGCCAATACCTGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
131 132 2.902343 GCTCGCCAATACCTGCCC 60.902 66.667 0.00 0.00 0.00 5.36
132 133 2.902343 GGCTCGCCAATACCTGCC 60.902 66.667 2.41 0.00 35.81 4.85
133 134 2.182842 CAGGCTCGCCAATACCTGC 61.183 63.158 11.02 0.00 42.96 4.85
134 135 4.131376 CAGGCTCGCCAATACCTG 57.869 61.111 11.02 0.00 43.45 4.00
135 136 2.190578 GCAGGCTCGCCAATACCT 59.809 61.111 11.02 0.00 38.92 3.08
136 137 1.889573 GAGCAGGCTCGCCAATACC 60.890 63.158 11.02 0.00 38.92 2.73
137 138 3.724494 GAGCAGGCTCGCCAATAC 58.276 61.111 11.02 0.00 38.92 1.89
145 146 0.033228 ATGCATACTCGAGCAGGCTC 59.967 55.000 21.68 11.21 44.94 4.70
146 147 0.249784 CATGCATACTCGAGCAGGCT 60.250 55.000 21.68 6.20 44.94 4.58
147 148 0.531532 ACATGCATACTCGAGCAGGC 60.532 55.000 15.20 15.20 45.51 4.85
148 149 1.202452 TCACATGCATACTCGAGCAGG 60.202 52.381 13.61 10.01 46.84 4.85
149 150 2.214387 TCACATGCATACTCGAGCAG 57.786 50.000 13.61 3.49 44.94 4.24
150 151 2.867975 CAATCACATGCATACTCGAGCA 59.132 45.455 13.61 5.84 45.92 4.26
151 152 2.222678 CCAATCACATGCATACTCGAGC 59.777 50.000 13.61 0.00 0.00 5.03
152 153 3.246936 CACCAATCACATGCATACTCGAG 59.753 47.826 11.84 11.84 0.00 4.04
153 154 3.118811 TCACCAATCACATGCATACTCGA 60.119 43.478 0.00 0.00 0.00 4.04
154 155 3.197265 TCACCAATCACATGCATACTCG 58.803 45.455 0.00 0.00 0.00 4.18
155 156 3.562973 CCTCACCAATCACATGCATACTC 59.437 47.826 0.00 0.00 0.00 2.59
156 157 3.200605 TCCTCACCAATCACATGCATACT 59.799 43.478 0.00 0.00 0.00 2.12
157 158 3.544684 TCCTCACCAATCACATGCATAC 58.455 45.455 0.00 0.00 0.00 2.39
158 159 3.929955 TCCTCACCAATCACATGCATA 57.070 42.857 0.00 0.00 0.00 3.14
159 160 2.812836 TCCTCACCAATCACATGCAT 57.187 45.000 0.00 0.00 0.00 3.96
160 161 2.040145 TCTTCCTCACCAATCACATGCA 59.960 45.455 0.00 0.00 0.00 3.96
161 162 2.715046 TCTTCCTCACCAATCACATGC 58.285 47.619 0.00 0.00 0.00 4.06
162 163 4.582869 TCTTCTTCCTCACCAATCACATG 58.417 43.478 0.00 0.00 0.00 3.21
163 164 4.533707 TCTCTTCTTCCTCACCAATCACAT 59.466 41.667 0.00 0.00 0.00 3.21
164 165 3.903714 TCTCTTCTTCCTCACCAATCACA 59.096 43.478 0.00 0.00 0.00 3.58
165 166 4.543590 TCTCTTCTTCCTCACCAATCAC 57.456 45.455 0.00 0.00 0.00 3.06
166 167 5.567037 TTTCTCTTCTTCCTCACCAATCA 57.433 39.130 0.00 0.00 0.00 2.57
167 168 8.567285 TTTATTTCTCTTCTTCCTCACCAATC 57.433 34.615 0.00 0.00 0.00 2.67
168 169 8.940397 TTTTATTTCTCTTCTTCCTCACCAAT 57.060 30.769 0.00 0.00 0.00 3.16
169 170 8.760980 TTTTTATTTCTCTTCTTCCTCACCAA 57.239 30.769 0.00 0.00 0.00 3.67
170 171 8.940397 ATTTTTATTTCTCTTCTTCCTCACCA 57.060 30.769 0.00 0.00 0.00 4.17
208 209 1.956477 AGCTCACCACGAAGCATTTTT 59.044 42.857 0.00 0.00 0.00 1.94
209 210 1.267806 CAGCTCACCACGAAGCATTTT 59.732 47.619 0.00 0.00 0.00 1.82
210 211 0.877071 CAGCTCACCACGAAGCATTT 59.123 50.000 0.00 0.00 0.00 2.32
211 212 0.035317 TCAGCTCACCACGAAGCATT 59.965 50.000 0.00 0.00 0.00 3.56
212 213 0.035317 TTCAGCTCACCACGAAGCAT 59.965 50.000 0.00 0.00 0.00 3.79
213 214 0.035317 ATTCAGCTCACCACGAAGCA 59.965 50.000 0.00 0.00 0.00 3.91
214 215 0.723981 GATTCAGCTCACCACGAAGC 59.276 55.000 0.00 0.00 0.00 3.86
215 216 0.994995 CGATTCAGCTCACCACGAAG 59.005 55.000 0.00 0.00 0.00 3.79
216 217 0.317160 ACGATTCAGCTCACCACGAA 59.683 50.000 0.00 0.00 0.00 3.85
217 218 1.170442 TACGATTCAGCTCACCACGA 58.830 50.000 0.00 0.00 0.00 4.35
218 219 1.854743 CATACGATTCAGCTCACCACG 59.145 52.381 0.00 0.00 0.00 4.94
219 220 2.860735 GACATACGATTCAGCTCACCAC 59.139 50.000 0.00 0.00 0.00 4.16
220 221 2.495669 TGACATACGATTCAGCTCACCA 59.504 45.455 0.00 0.00 0.00 4.17
221 222 2.860735 GTGACATACGATTCAGCTCACC 59.139 50.000 0.00 0.00 0.00 4.02
222 223 3.511699 TGTGACATACGATTCAGCTCAC 58.488 45.455 0.00 0.00 0.00 3.51
223 224 3.443681 TCTGTGACATACGATTCAGCTCA 59.556 43.478 0.00 0.00 0.00 4.26
224 225 3.794028 GTCTGTGACATACGATTCAGCTC 59.206 47.826 0.00 0.00 32.09 4.09
225 226 3.193479 TGTCTGTGACATACGATTCAGCT 59.807 43.478 0.00 0.00 37.67 4.24
226 227 3.304559 GTGTCTGTGACATACGATTCAGC 59.695 47.826 3.65 0.00 44.63 4.26
227 228 4.485163 TGTGTCTGTGACATACGATTCAG 58.515 43.478 3.65 0.00 44.63 3.02
228 229 4.217550 TCTGTGTCTGTGACATACGATTCA 59.782 41.667 3.65 0.00 44.63 2.57
229 230 4.733850 TCTGTGTCTGTGACATACGATTC 58.266 43.478 3.65 0.00 44.63 2.52
230 231 4.783764 TCTGTGTCTGTGACATACGATT 57.216 40.909 3.65 0.00 44.63 3.34
231 232 4.783764 TTCTGTGTCTGTGACATACGAT 57.216 40.909 3.65 0.00 44.63 3.73
232 233 4.217550 TGATTCTGTGTCTGTGACATACGA 59.782 41.667 3.65 0.00 44.63 3.43
233 234 4.324669 GTGATTCTGTGTCTGTGACATACG 59.675 45.833 3.65 0.00 44.63 3.06
234 235 5.347093 CAGTGATTCTGTGTCTGTGACATAC 59.653 44.000 3.65 0.00 44.63 2.39
235 236 5.243730 TCAGTGATTCTGTGTCTGTGACATA 59.756 40.000 3.65 0.64 44.63 2.29
236 237 4.039609 TCAGTGATTCTGTGTCTGTGACAT 59.960 41.667 3.65 0.00 44.63 3.06
237 238 3.384467 TCAGTGATTCTGTGTCTGTGACA 59.616 43.478 0.00 0.00 43.97 3.58
238 239 3.738282 GTCAGTGATTCTGTGTCTGTGAC 59.262 47.826 0.00 0.00 43.97 3.67
239 240 3.243873 GGTCAGTGATTCTGTGTCTGTGA 60.244 47.826 0.00 0.00 43.97 3.58
240 241 3.062763 GGTCAGTGATTCTGTGTCTGTG 58.937 50.000 0.00 0.00 43.97 3.66
241 242 2.288457 CGGTCAGTGATTCTGTGTCTGT 60.288 50.000 0.00 0.00 43.97 3.41
242 243 2.332104 CGGTCAGTGATTCTGTGTCTG 58.668 52.381 0.00 0.00 43.97 3.51
243 244 1.273606 CCGGTCAGTGATTCTGTGTCT 59.726 52.381 0.00 0.00 43.97 3.41
244 245 1.272490 TCCGGTCAGTGATTCTGTGTC 59.728 52.381 0.00 0.00 43.97 3.67
245 246 1.000955 GTCCGGTCAGTGATTCTGTGT 59.999 52.381 0.00 0.00 43.97 3.72
246 247 1.000843 TGTCCGGTCAGTGATTCTGTG 59.999 52.381 0.00 0.00 43.97 3.66
247 248 1.338107 TGTCCGGTCAGTGATTCTGT 58.662 50.000 0.00 0.00 43.97 3.41
248 249 2.274437 CATGTCCGGTCAGTGATTCTG 58.726 52.381 7.60 0.00 44.85 3.02
249 250 1.406069 GCATGTCCGGTCAGTGATTCT 60.406 52.381 7.60 0.00 0.00 2.40
250 251 1.009829 GCATGTCCGGTCAGTGATTC 58.990 55.000 7.60 0.00 0.00 2.52
251 252 0.615331 AGCATGTCCGGTCAGTGATT 59.385 50.000 7.60 0.00 0.00 2.57
252 253 0.615331 AAGCATGTCCGGTCAGTGAT 59.385 50.000 7.60 2.25 0.00 3.06
253 254 0.320683 CAAGCATGTCCGGTCAGTGA 60.321 55.000 7.60 0.00 0.00 3.41
254 255 1.300971 CCAAGCATGTCCGGTCAGTG 61.301 60.000 7.60 7.07 0.00 3.66
255 256 1.003355 CCAAGCATGTCCGGTCAGT 60.003 57.895 7.60 0.00 0.00 3.41
256 257 1.021390 GTCCAAGCATGTCCGGTCAG 61.021 60.000 7.60 1.10 0.00 3.51
257 258 1.003839 GTCCAAGCATGTCCGGTCA 60.004 57.895 3.25 3.25 0.00 4.02
258 259 1.003839 TGTCCAAGCATGTCCGGTC 60.004 57.895 0.00 0.00 0.00 4.79
259 260 1.302511 GTGTCCAAGCATGTCCGGT 60.303 57.895 0.00 0.00 0.00 5.28
260 261 1.003355 AGTGTCCAAGCATGTCCGG 60.003 57.895 0.00 0.00 0.00 5.14
261 262 1.021390 GGAGTGTCCAAGCATGTCCG 61.021 60.000 0.00 0.00 36.28 4.79
262 263 0.326264 AGGAGTGTCCAAGCATGTCC 59.674 55.000 0.00 0.00 39.61 4.02
263 264 1.731720 GAGGAGTGTCCAAGCATGTC 58.268 55.000 0.00 0.00 39.61 3.06
264 265 0.036952 CGAGGAGTGTCCAAGCATGT 60.037 55.000 0.00 0.00 39.61 3.21
265 266 0.036952 ACGAGGAGTGTCCAAGCATG 60.037 55.000 0.00 0.00 39.61 4.06
266 267 1.204941 GTACGAGGAGTGTCCAAGCAT 59.795 52.381 0.00 0.00 39.61 3.79
267 268 0.601558 GTACGAGGAGTGTCCAAGCA 59.398 55.000 0.00 0.00 39.61 3.91
268 269 0.889306 AGTACGAGGAGTGTCCAAGC 59.111 55.000 0.00 0.00 39.61 4.01
269 270 2.160205 TGAGTACGAGGAGTGTCCAAG 58.840 52.381 0.00 0.00 39.61 3.61
270 271 2.281539 TGAGTACGAGGAGTGTCCAA 57.718 50.000 0.00 0.00 39.61 3.53
271 272 2.509166 ATGAGTACGAGGAGTGTCCA 57.491 50.000 0.00 0.00 39.61 4.02
272 273 3.192844 TGAAATGAGTACGAGGAGTGTCC 59.807 47.826 0.00 0.00 36.58 4.02
273 274 4.436242 TGAAATGAGTACGAGGAGTGTC 57.564 45.455 0.00 0.00 0.00 3.67
274 275 6.716934 ATATGAAATGAGTACGAGGAGTGT 57.283 37.500 0.00 0.00 0.00 3.55
275 276 7.877003 AGTATATGAAATGAGTACGAGGAGTG 58.123 38.462 0.00 0.00 0.00 3.51
276 277 7.940137 AGAGTATATGAAATGAGTACGAGGAGT 59.060 37.037 0.00 0.00 0.00 3.85
277 278 8.330466 AGAGTATATGAAATGAGTACGAGGAG 57.670 38.462 0.00 0.00 0.00 3.69
278 279 8.158132 AGAGAGTATATGAAATGAGTACGAGGA 58.842 37.037 0.00 0.00 0.00 3.71
279 280 8.330466 AGAGAGTATATGAAATGAGTACGAGG 57.670 38.462 0.00 0.00 0.00 4.63
280 281 8.447833 GGAGAGAGTATATGAAATGAGTACGAG 58.552 40.741 0.00 0.00 0.00 4.18
281 282 7.117956 CGGAGAGAGTATATGAAATGAGTACGA 59.882 40.741 0.00 0.00 0.00 3.43
282 283 7.095144 ACGGAGAGAGTATATGAAATGAGTACG 60.095 40.741 0.00 0.00 0.00 3.67
283 284 8.101654 ACGGAGAGAGTATATGAAATGAGTAC 57.898 38.462 0.00 0.00 0.00 2.73
284 285 8.693120 AACGGAGAGAGTATATGAAATGAGTA 57.307 34.615 0.00 0.00 0.00 2.59
285 286 7.589958 AACGGAGAGAGTATATGAAATGAGT 57.410 36.000 0.00 0.00 0.00 3.41
286 287 8.879342 AAAACGGAGAGAGTATATGAAATGAG 57.121 34.615 0.00 0.00 0.00 2.90
310 311 9.394767 TGCTCAAATCTTATATGCAGACTAAAA 57.605 29.630 0.00 0.00 0.00 1.52
311 312 8.962884 TGCTCAAATCTTATATGCAGACTAAA 57.037 30.769 0.00 0.00 0.00 1.85
312 313 8.962884 TTGCTCAAATCTTATATGCAGACTAA 57.037 30.769 0.00 0.00 0.00 2.24
313 314 8.962884 TTTGCTCAAATCTTATATGCAGACTA 57.037 30.769 0.00 0.00 0.00 2.59
314 315 7.555554 ACTTTGCTCAAATCTTATATGCAGACT 59.444 33.333 0.00 0.00 0.00 3.24
315 316 7.701445 ACTTTGCTCAAATCTTATATGCAGAC 58.299 34.615 0.00 0.00 0.00 3.51
316 317 7.553760 TGACTTTGCTCAAATCTTATATGCAGA 59.446 33.333 0.00 0.00 0.00 4.26
317 318 7.700505 TGACTTTGCTCAAATCTTATATGCAG 58.299 34.615 0.00 0.00 0.00 4.41
318 319 7.628769 TGACTTTGCTCAAATCTTATATGCA 57.371 32.000 0.00 0.00 0.00 3.96
319 320 8.801913 GTTTGACTTTGCTCAAATCTTATATGC 58.198 33.333 2.60 0.00 41.17 3.14
484 485 9.628500 AGATTTGGTCAGAGTTAAACTTTAACT 57.372 29.630 21.79 21.79 40.15 2.24
485 486 9.880064 GAGATTTGGTCAGAGTTAAACTTTAAC 57.120 33.333 14.27 14.27 0.00 2.01
486 487 9.621629 TGAGATTTGGTCAGAGTTAAACTTTAA 57.378 29.630 0.00 0.00 0.00 1.52
487 488 9.793259 ATGAGATTTGGTCAGAGTTAAACTTTA 57.207 29.630 0.00 0.00 0.00 1.85
488 489 8.697507 ATGAGATTTGGTCAGAGTTAAACTTT 57.302 30.769 0.00 0.00 0.00 2.66
489 490 9.965902 ATATGAGATTTGGTCAGAGTTAAACTT 57.034 29.630 0.00 0.00 0.00 2.66
494 495 9.421399 TCTGTATATGAGATTTGGTCAGAGTTA 57.579 33.333 0.00 0.00 0.00 2.24
495 496 8.311395 TCTGTATATGAGATTTGGTCAGAGTT 57.689 34.615 0.00 0.00 0.00 3.01
496 497 7.904558 TCTGTATATGAGATTTGGTCAGAGT 57.095 36.000 0.00 0.00 0.00 3.24
497 498 7.950512 ACTCTGTATATGAGATTTGGTCAGAG 58.049 38.462 14.14 14.14 46.37 3.35
498 499 7.904558 ACTCTGTATATGAGATTTGGTCAGA 57.095 36.000 11.19 0.00 35.66 3.27
508 509 9.392259 TCGTCTCTTTTTACTCTGTATATGAGA 57.608 33.333 11.19 0.00 35.66 3.27
511 512 9.239002 CCTTCGTCTCTTTTTACTCTGTATATG 57.761 37.037 0.00 0.00 0.00 1.78
512 513 8.414778 CCCTTCGTCTCTTTTTACTCTGTATAT 58.585 37.037 0.00 0.00 0.00 0.86
513 514 7.613022 TCCCTTCGTCTCTTTTTACTCTGTATA 59.387 37.037 0.00 0.00 0.00 1.47
514 515 6.436532 TCCCTTCGTCTCTTTTTACTCTGTAT 59.563 38.462 0.00 0.00 0.00 2.29
515 516 5.771666 TCCCTTCGTCTCTTTTTACTCTGTA 59.228 40.000 0.00 0.00 0.00 2.74
516 517 4.587684 TCCCTTCGTCTCTTTTTACTCTGT 59.412 41.667 0.00 0.00 0.00 3.41
517 518 5.135508 TCCCTTCGTCTCTTTTTACTCTG 57.864 43.478 0.00 0.00 0.00 3.35
518 519 4.833938 ACTCCCTTCGTCTCTTTTTACTCT 59.166 41.667 0.00 0.00 0.00 3.24
519 520 5.136816 ACTCCCTTCGTCTCTTTTTACTC 57.863 43.478 0.00 0.00 0.00 2.59
520 521 6.436532 TCATACTCCCTTCGTCTCTTTTTACT 59.563 38.462 0.00 0.00 0.00 2.24
521 522 6.628185 TCATACTCCCTTCGTCTCTTTTTAC 58.372 40.000 0.00 0.00 0.00 2.01
522 523 6.127423 CCTCATACTCCCTTCGTCTCTTTTTA 60.127 42.308 0.00 0.00 0.00 1.52
523 524 5.337652 CCTCATACTCCCTTCGTCTCTTTTT 60.338 44.000 0.00 0.00 0.00 1.94
524 525 4.160626 CCTCATACTCCCTTCGTCTCTTTT 59.839 45.833 0.00 0.00 0.00 2.27
525 526 3.702045 CCTCATACTCCCTTCGTCTCTTT 59.298 47.826 0.00 0.00 0.00 2.52
526 527 3.292460 CCTCATACTCCCTTCGTCTCTT 58.708 50.000 0.00 0.00 0.00 2.85
527 528 2.423660 CCCTCATACTCCCTTCGTCTCT 60.424 54.545 0.00 0.00 0.00 3.10
528 529 1.957877 CCCTCATACTCCCTTCGTCTC 59.042 57.143 0.00 0.00 0.00 3.36
529 530 2.030045 GCCCTCATACTCCCTTCGTCT 61.030 57.143 0.00 0.00 0.00 4.18
530 531 0.389757 GCCCTCATACTCCCTTCGTC 59.610 60.000 0.00 0.00 0.00 4.20
531 532 0.325296 TGCCCTCATACTCCCTTCGT 60.325 55.000 0.00 0.00 0.00 3.85
532 533 0.830648 TTGCCCTCATACTCCCTTCG 59.169 55.000 0.00 0.00 0.00 3.79
533 534 4.287067 TCATATTGCCCTCATACTCCCTTC 59.713 45.833 0.00 0.00 0.00 3.46
534 535 4.242811 TCATATTGCCCTCATACTCCCTT 58.757 43.478 0.00 0.00 0.00 3.95
535 536 3.843027 CTCATATTGCCCTCATACTCCCT 59.157 47.826 0.00 0.00 0.00 4.20
536 537 3.054802 CCTCATATTGCCCTCATACTCCC 60.055 52.174 0.00 0.00 0.00 4.30
537 538 3.054802 CCCTCATATTGCCCTCATACTCC 60.055 52.174 0.00 0.00 0.00 3.85
538 539 3.054802 CCCCTCATATTGCCCTCATACTC 60.055 52.174 0.00 0.00 0.00 2.59
539 540 2.915604 CCCCTCATATTGCCCTCATACT 59.084 50.000 0.00 0.00 0.00 2.12
540 541 2.644798 ACCCCTCATATTGCCCTCATAC 59.355 50.000 0.00 0.00 0.00 2.39
541 542 2.644299 CACCCCTCATATTGCCCTCATA 59.356 50.000 0.00 0.00 0.00 2.15
542 543 1.426598 CACCCCTCATATTGCCCTCAT 59.573 52.381 0.00 0.00 0.00 2.90
543 544 0.846015 CACCCCTCATATTGCCCTCA 59.154 55.000 0.00 0.00 0.00 3.86
544 545 0.538287 GCACCCCTCATATTGCCCTC 60.538 60.000 0.00 0.00 0.00 4.30
545 546 1.538666 GCACCCCTCATATTGCCCT 59.461 57.895 0.00 0.00 0.00 5.19
546 547 4.181051 GCACCCCTCATATTGCCC 57.819 61.111 0.00 0.00 0.00 5.36
548 549 0.825010 CCTGGCACCCCTCATATTGC 60.825 60.000 0.00 0.00 0.00 3.56
549 550 0.825010 GCCTGGCACCCCTCATATTG 60.825 60.000 15.17 0.00 0.00 1.90
550 551 1.288508 TGCCTGGCACCCCTCATATT 61.289 55.000 19.30 0.00 31.71 1.28
551 552 1.288508 TTGCCTGGCACCCCTCATAT 61.289 55.000 23.30 0.00 38.71 1.78
552 553 1.288508 ATTGCCTGGCACCCCTCATA 61.289 55.000 23.30 4.07 38.71 2.15
553 554 1.288508 TATTGCCTGGCACCCCTCAT 61.289 55.000 23.30 13.60 38.71 2.90
554 555 1.505151 TTATTGCCTGGCACCCCTCA 61.505 55.000 23.30 5.81 38.71 3.86
555 556 0.106015 ATTATTGCCTGGCACCCCTC 60.106 55.000 23.30 0.00 38.71 4.30
556 557 1.231018 TATTATTGCCTGGCACCCCT 58.769 50.000 23.30 9.45 38.71 4.79
557 558 2.080654 TTATTATTGCCTGGCACCCC 57.919 50.000 23.30 0.00 38.71 4.95
558 559 4.188462 GTTTTTATTATTGCCTGGCACCC 58.812 43.478 23.30 0.00 38.71 4.61
559 560 4.826556 TGTTTTTATTATTGCCTGGCACC 58.173 39.130 23.30 0.05 38.71 5.01
560 561 6.983474 AATGTTTTTATTATTGCCTGGCAC 57.017 33.333 23.30 6.25 38.71 5.01
561 562 9.160496 CTTAAATGTTTTTATTATTGCCTGGCA 57.840 29.630 19.30 19.30 36.47 4.92
562 563 8.611757 CCTTAAATGTTTTTATTATTGCCTGGC 58.388 33.333 12.87 12.87 0.00 4.85
563 564 9.883142 TCCTTAAATGTTTTTATTATTGCCTGG 57.117 29.630 0.00 0.00 0.00 4.45
566 567 8.826710 GCCTCCTTAAATGTTTTTATTATTGCC 58.173 33.333 0.00 0.00 0.00 4.52
567 568 9.599866 AGCCTCCTTAAATGTTTTTATTATTGC 57.400 29.630 0.00 0.00 0.00 3.56
572 573 9.710900 CTCAAAGCCTCCTTAAATGTTTTTATT 57.289 29.630 0.00 0.00 0.00 1.40
573 574 9.088987 TCTCAAAGCCTCCTTAAATGTTTTTAT 57.911 29.630 0.00 0.00 0.00 1.40
574 575 8.472007 TCTCAAAGCCTCCTTAAATGTTTTTA 57.528 30.769 0.00 0.00 0.00 1.52
575 576 7.360113 TCTCAAAGCCTCCTTAAATGTTTTT 57.640 32.000 0.00 0.00 0.00 1.94
576 577 6.015095 CCTCTCAAAGCCTCCTTAAATGTTTT 60.015 38.462 0.00 0.00 0.00 2.43
577 578 5.478332 CCTCTCAAAGCCTCCTTAAATGTTT 59.522 40.000 0.00 0.00 0.00 2.83
578 579 5.012893 CCTCTCAAAGCCTCCTTAAATGTT 58.987 41.667 0.00 0.00 0.00 2.71
579 580 4.043435 ACCTCTCAAAGCCTCCTTAAATGT 59.957 41.667 0.00 0.00 0.00 2.71
580 581 4.593956 ACCTCTCAAAGCCTCCTTAAATG 58.406 43.478 0.00 0.00 0.00 2.32
581 582 4.936685 ACCTCTCAAAGCCTCCTTAAAT 57.063 40.909 0.00 0.00 0.00 1.40
582 583 4.724279 AACCTCTCAAAGCCTCCTTAAA 57.276 40.909 0.00 0.00 0.00 1.52
583 584 4.398319 CAAACCTCTCAAAGCCTCCTTAA 58.602 43.478 0.00 0.00 0.00 1.85
584 585 3.244911 CCAAACCTCTCAAAGCCTCCTTA 60.245 47.826 0.00 0.00 0.00 2.69
585 586 2.489802 CCAAACCTCTCAAAGCCTCCTT 60.490 50.000 0.00 0.00 0.00 3.36
586 587 1.074566 CCAAACCTCTCAAAGCCTCCT 59.925 52.381 0.00 0.00 0.00 3.69
587 588 1.202940 ACCAAACCTCTCAAAGCCTCC 60.203 52.381 0.00 0.00 0.00 4.30
588 589 2.278332 ACCAAACCTCTCAAAGCCTC 57.722 50.000 0.00 0.00 0.00 4.70
589 590 2.755952 AACCAAACCTCTCAAAGCCT 57.244 45.000 0.00 0.00 0.00 4.58
590 591 3.751518 TCTAACCAAACCTCTCAAAGCC 58.248 45.455 0.00 0.00 0.00 4.35
591 592 5.003804 TGATCTAACCAAACCTCTCAAAGC 58.996 41.667 0.00 0.00 0.00 3.51
592 593 7.391554 TGATTGATCTAACCAAACCTCTCAAAG 59.608 37.037 0.00 0.00 0.00 2.77
593 594 7.230747 TGATTGATCTAACCAAACCTCTCAAA 58.769 34.615 0.00 0.00 0.00 2.69
594 595 6.778821 TGATTGATCTAACCAAACCTCTCAA 58.221 36.000 0.00 0.00 0.00 3.02
595 596 6.373005 TGATTGATCTAACCAAACCTCTCA 57.627 37.500 0.00 0.00 0.00 3.27
596 597 7.872113 AATGATTGATCTAACCAAACCTCTC 57.128 36.000 0.00 0.00 0.00 3.20
597 598 9.401058 CTAAATGATTGATCTAACCAAACCTCT 57.599 33.333 0.00 0.00 0.00 3.69
598 599 9.178758 ACTAAATGATTGATCTAACCAAACCTC 57.821 33.333 0.00 0.00 0.00 3.85
599 600 9.533831 AACTAAATGATTGATCTAACCAAACCT 57.466 29.630 0.00 0.00 0.00 3.50
604 605 9.739276 AGACAAACTAAATGATTGATCTAACCA 57.261 29.630 0.00 0.00 33.41 3.67
605 606 9.994432 CAGACAAACTAAATGATTGATCTAACC 57.006 33.333 0.00 0.00 33.41 2.85
606 607 9.994432 CCAGACAAACTAAATGATTGATCTAAC 57.006 33.333 0.00 0.00 33.41 2.34
607 608 9.739276 ACCAGACAAACTAAATGATTGATCTAA 57.261 29.630 0.00 0.00 33.41 2.10
608 609 9.739276 AACCAGACAAACTAAATGATTGATCTA 57.261 29.630 0.00 0.00 33.41 1.98
609 610 8.641498 AACCAGACAAACTAAATGATTGATCT 57.359 30.769 0.00 0.00 33.41 2.75
613 614 9.357652 CCATTAACCAGACAAACTAAATGATTG 57.642 33.333 0.00 0.00 35.02 2.67
614 615 8.034804 GCCATTAACCAGACAAACTAAATGATT 58.965 33.333 0.00 0.00 0.00 2.57
615 616 7.397192 AGCCATTAACCAGACAAACTAAATGAT 59.603 33.333 0.00 0.00 0.00 2.45
616 617 6.719370 AGCCATTAACCAGACAAACTAAATGA 59.281 34.615 0.00 0.00 0.00 2.57
617 618 6.924111 AGCCATTAACCAGACAAACTAAATG 58.076 36.000 0.00 0.00 0.00 2.32
618 619 6.948309 AGAGCCATTAACCAGACAAACTAAAT 59.052 34.615 0.00 0.00 0.00 1.40
619 620 6.206634 CAGAGCCATTAACCAGACAAACTAAA 59.793 38.462 0.00 0.00 0.00 1.85
620 621 5.705441 CAGAGCCATTAACCAGACAAACTAA 59.295 40.000 0.00 0.00 0.00 2.24
621 622 5.245531 CAGAGCCATTAACCAGACAAACTA 58.754 41.667 0.00 0.00 0.00 2.24
622 623 4.074970 CAGAGCCATTAACCAGACAAACT 58.925 43.478 0.00 0.00 0.00 2.66
623 624 3.366374 GCAGAGCCATTAACCAGACAAAC 60.366 47.826 0.00 0.00 0.00 2.93
624 625 2.819608 GCAGAGCCATTAACCAGACAAA 59.180 45.455 0.00 0.00 0.00 2.83
625 626 2.436417 GCAGAGCCATTAACCAGACAA 58.564 47.619 0.00 0.00 0.00 3.18
626 627 1.675714 CGCAGAGCCATTAACCAGACA 60.676 52.381 0.00 0.00 0.00 3.41
627 628 1.009829 CGCAGAGCCATTAACCAGAC 58.990 55.000 0.00 0.00 0.00 3.51
628 629 0.613260 ACGCAGAGCCATTAACCAGA 59.387 50.000 0.00 0.00 0.00 3.86
629 630 1.398390 GAACGCAGAGCCATTAACCAG 59.602 52.381 0.00 0.00 0.00 4.00
630 631 1.003118 AGAACGCAGAGCCATTAACCA 59.997 47.619 0.00 0.00 0.00 3.67
631 632 1.398390 CAGAACGCAGAGCCATTAACC 59.602 52.381 0.00 0.00 0.00 2.85
632 633 2.346803 TCAGAACGCAGAGCCATTAAC 58.653 47.619 0.00 0.00 0.00 2.01
633 634 2.760634 TCAGAACGCAGAGCCATTAA 57.239 45.000 0.00 0.00 0.00 1.40
634 635 2.168313 TGATCAGAACGCAGAGCCATTA 59.832 45.455 0.00 0.00 0.00 1.90
635 636 1.065926 TGATCAGAACGCAGAGCCATT 60.066 47.619 0.00 0.00 0.00 3.16
636 637 0.538584 TGATCAGAACGCAGAGCCAT 59.461 50.000 0.00 0.00 0.00 4.40
637 638 0.321346 TTGATCAGAACGCAGAGCCA 59.679 50.000 0.00 0.00 0.00 4.75
638 639 1.661341 ATTGATCAGAACGCAGAGCC 58.339 50.000 0.00 0.00 0.00 4.70
639 640 3.125829 TCAAATTGATCAGAACGCAGAGC 59.874 43.478 0.00 0.00 0.00 4.09
640 641 4.201792 CCTCAAATTGATCAGAACGCAGAG 60.202 45.833 0.00 0.00 0.00 3.35
641 642 3.686241 CCTCAAATTGATCAGAACGCAGA 59.314 43.478 0.00 0.00 0.00 4.26
642 643 3.686241 TCCTCAAATTGATCAGAACGCAG 59.314 43.478 0.00 0.00 0.00 5.18
643 644 3.673902 TCCTCAAATTGATCAGAACGCA 58.326 40.909 0.00 0.00 0.00 5.24
644 645 3.486542 GCTCCTCAAATTGATCAGAACGC 60.487 47.826 0.00 0.00 0.00 4.84
645 646 3.064545 GGCTCCTCAAATTGATCAGAACG 59.935 47.826 0.00 0.00 0.00 3.95
646 647 3.379688 GGGCTCCTCAAATTGATCAGAAC 59.620 47.826 0.00 0.00 0.00 3.01
647 648 3.624777 GGGCTCCTCAAATTGATCAGAA 58.375 45.455 0.00 0.00 0.00 3.02
648 649 2.420547 CGGGCTCCTCAAATTGATCAGA 60.421 50.000 0.00 0.00 0.00 3.27
649 650 1.945394 CGGGCTCCTCAAATTGATCAG 59.055 52.381 0.00 0.00 0.00 2.90
650 651 2.018644 GCGGGCTCCTCAAATTGATCA 61.019 52.381 0.00 0.00 0.00 2.92
651 652 0.665298 GCGGGCTCCTCAAATTGATC 59.335 55.000 0.00 0.00 0.00 2.92
652 653 0.257039 AGCGGGCTCCTCAAATTGAT 59.743 50.000 0.00 0.00 0.00 2.57
653 654 0.038166 AAGCGGGCTCCTCAAATTGA 59.962 50.000 0.00 0.00 0.00 2.57
654 655 1.401905 GTAAGCGGGCTCCTCAAATTG 59.598 52.381 0.00 0.00 0.00 2.32
655 656 1.004277 TGTAAGCGGGCTCCTCAAATT 59.996 47.619 0.00 0.00 0.00 1.82
656 657 0.618458 TGTAAGCGGGCTCCTCAAAT 59.382 50.000 0.00 0.00 0.00 2.32
657 658 0.036388 CTGTAAGCGGGCTCCTCAAA 60.036 55.000 0.00 0.00 0.00 2.69
658 659 0.902984 TCTGTAAGCGGGCTCCTCAA 60.903 55.000 0.00 0.00 0.00 3.02
659 660 0.687757 ATCTGTAAGCGGGCTCCTCA 60.688 55.000 0.00 0.00 0.00 3.86
660 661 0.249657 CATCTGTAAGCGGGCTCCTC 60.250 60.000 0.00 0.00 0.00 3.71
661 662 1.690219 CCATCTGTAAGCGGGCTCCT 61.690 60.000 0.00 0.00 0.00 3.69
662 663 1.227674 CCATCTGTAAGCGGGCTCC 60.228 63.158 0.00 0.00 0.00 4.70
663 664 0.107654 AACCATCTGTAAGCGGGCTC 60.108 55.000 0.00 0.00 31.26 4.70
664 665 0.328258 AAACCATCTGTAAGCGGGCT 59.672 50.000 0.00 0.00 31.26 5.19
665 666 1.173913 AAAACCATCTGTAAGCGGGC 58.826 50.000 0.00 0.00 31.26 6.13
666 667 3.606687 AGTAAAACCATCTGTAAGCGGG 58.393 45.455 0.00 0.00 31.26 6.13
667 668 4.504858 AGAGTAAAACCATCTGTAAGCGG 58.495 43.478 0.00 0.00 33.03 5.52
668 669 5.411781 AGAGAGTAAAACCATCTGTAAGCG 58.588 41.667 0.00 0.00 0.00 4.68
669 670 6.635755 AGAGAGAGTAAAACCATCTGTAAGC 58.364 40.000 0.00 0.00 0.00 3.09
694 695 8.857694 TTTCTCTCCCACGAGTATTTTTAAAT 57.142 30.769 0.00 0.00 37.40 1.40
698 699 6.940298 TCAATTTCTCTCCCACGAGTATTTTT 59.060 34.615 0.00 0.00 37.40 1.94
703 704 6.183360 CCTTATCAATTTCTCTCCCACGAGTA 60.183 42.308 0.00 0.00 37.40 2.59
707 708 3.561725 GCCTTATCAATTTCTCTCCCACG 59.438 47.826 0.00 0.00 0.00 4.94
727 728 2.822764 ACTCGTCGGAAAATAGATGCC 58.177 47.619 0.00 0.00 0.00 4.40
728 729 6.526566 AAATACTCGTCGGAAAATAGATGC 57.473 37.500 0.00 0.00 0.00 3.91
732 733 5.555818 GCGGAAAATACTCGTCGGAAAATAG 60.556 44.000 0.00 0.00 0.00 1.73
733 734 4.268405 GCGGAAAATACTCGTCGGAAAATA 59.732 41.667 0.00 0.00 0.00 1.40
744 745 1.134907 TCCTCCGTGCGGAAAATACTC 60.135 52.381 14.53 0.00 44.66 2.59
752 753 1.043116 AATCTCATCCTCCGTGCGGA 61.043 55.000 13.01 13.01 42.90 5.54
753 754 0.179073 AAATCTCATCCTCCGTGCGG 60.179 55.000 3.94 3.94 0.00 5.69
754 755 1.656652 AAAATCTCATCCTCCGTGCG 58.343 50.000 0.00 0.00 0.00 5.34
756 757 3.426695 GCACAAAAATCTCATCCTCCGTG 60.427 47.826 0.00 0.00 0.00 4.94
787 788 2.090775 ACTGGTTCAGGTGGGGAATTTT 60.091 45.455 0.00 0.00 35.51 1.82
998 1014 2.003548 GGGGAGGAAGTGGGCATCT 61.004 63.158 0.00 0.00 0.00 2.90
1006 1028 0.767060 ACAAACGAGGGGGAGGAAGT 60.767 55.000 0.00 0.00 0.00 3.01
1176 1521 4.916293 ATGTCGATGCGGCGCCAT 62.916 61.111 30.82 21.22 32.50 4.40
1293 1639 1.154338 GTCGTGGTCGTCGGTGTAG 60.154 63.158 0.00 0.00 38.33 2.74
1360 1706 4.013050 AGCTCCTAAAACAAGAAGATGGC 58.987 43.478 0.00 0.00 0.00 4.40
1386 1742 5.016173 AGCCACTGCCTAACAAATCAAATA 58.984 37.500 0.00 0.00 38.69 1.40
1387 1743 3.834231 AGCCACTGCCTAACAAATCAAAT 59.166 39.130 0.00 0.00 38.69 2.32
1404 1766 4.189231 ACGGAAACAGAACATATAGCCAC 58.811 43.478 0.00 0.00 0.00 5.01
1687 2647 5.005875 GTGATAGGTTTTCTCTAGCGCTTTC 59.994 44.000 18.68 0.00 32.76 2.62
1712 2674 1.082117 GGTGTCCGGAGTAATGCACG 61.082 60.000 3.06 0.00 0.00 5.34
1726 2688 1.299541 CATGAAGGCGGTATGGTGTC 58.700 55.000 0.00 0.00 0.00 3.67
1736 2725 0.167470 CTGCAGACAACATGAAGGCG 59.833 55.000 8.42 0.00 0.00 5.52
1877 2988 8.634475 AAATTCAGCAGAGTAAAACTTGAAAC 57.366 30.769 0.00 0.00 0.00 2.78
2031 3176 6.349243 TGAGTTAATTCTTAGACGGGACAA 57.651 37.500 0.00 0.00 0.00 3.18
2141 3318 6.128282 TGGAAAATACTCAGAAGCGCTAAAAG 60.128 38.462 12.05 8.96 0.00 2.27
2238 3416 4.135306 CTGCACTCCAGCATATGAAATCT 58.865 43.478 6.97 0.00 44.68 2.40
2262 3451 6.584563 TCGCAGGTTGCAAAATTAGAATAAAC 59.415 34.615 0.00 0.00 45.36 2.01
2375 3577 7.632245 GCATAGCATCATAGGACACAGATCATA 60.632 40.741 0.00 0.00 0.00 2.15
2376 3578 6.641474 CATAGCATCATAGGACACAGATCAT 58.359 40.000 0.00 0.00 0.00 2.45
2377 3579 5.568223 GCATAGCATCATAGGACACAGATCA 60.568 44.000 0.00 0.00 0.00 2.92
2378 3580 4.869297 GCATAGCATCATAGGACACAGATC 59.131 45.833 0.00 0.00 0.00 2.75
2725 3971 3.673594 CGTCCTTATTCAGTCTGAAGCGT 60.674 47.826 19.64 6.89 40.05 5.07
2879 4125 1.066002 CTCAAGGTGGCGGCAATTATG 59.934 52.381 15.50 11.00 0.00 1.90
2971 4217 2.777114 TGGCAGGATAAGCCTCAATGTA 59.223 45.455 5.74 0.00 46.97 2.29
3008 4254 0.813184 ACAAATTGCCCTCTCATGCG 59.187 50.000 0.00 0.00 0.00 4.73
3109 4487 1.072806 AGCTTGCACACCTGATTCTCA 59.927 47.619 0.00 0.00 0.00 3.27
3140 4518 0.813184 ACAAATTGCCCTCTCATGCG 59.187 50.000 0.00 0.00 0.00 4.73
3695 5074 2.290260 TGCGACCCTTGTTCTCATGAAT 60.290 45.455 0.00 0.00 34.40 2.57
3847 5226 2.180276 ACAAGAGCTGGAATACCTCGT 58.820 47.619 0.00 0.00 37.04 4.18
4017 5396 0.944311 GACCGTTTCTCTTGCTCGCA 60.944 55.000 0.00 0.00 0.00 5.10
4032 5411 2.356382 TGTTGTAAAAAGTGGCAGACCG 59.644 45.455 0.00 0.00 39.70 4.79
4179 5623 2.111043 CAGCACCGGTCAACCACT 59.889 61.111 2.59 0.00 35.14 4.00
4316 5796 3.130340 CCCGGTCAAAAAGATACCAATGG 59.870 47.826 0.00 0.00 32.55 3.16
4448 6887 5.327616 CTCCTGGAGCTATCATGATACAG 57.672 47.826 11.42 17.91 0.00 2.74
4515 6965 5.527951 CAAATTTGTGCTAACTGCCAAGTA 58.472 37.500 10.15 0.00 42.00 2.24
4558 7008 4.400884 ACATAACTGAGGTAGACTGCTGAG 59.599 45.833 0.00 0.00 0.00 3.35
4563 7013 6.038161 CAGAGAGACATAACTGAGGTAGACTG 59.962 46.154 0.00 0.00 32.90 3.51
4578 7028 3.514706 AGTCTGTGCAATCAGAGAGACAT 59.485 43.478 7.24 0.00 42.39 3.06
4608 7058 5.491982 ACATGACGCTTCCTTTTCTCTTAT 58.508 37.500 0.00 0.00 0.00 1.73
4675 7126 1.277842 ACACATGGTTGCATCCTACGA 59.722 47.619 14.81 0.00 0.00 3.43
4728 7180 0.883833 CACCCAATCTTGTCAGGCAC 59.116 55.000 0.00 0.00 0.00 5.01
4731 7183 1.171308 CAGCACCCAATCTTGTCAGG 58.829 55.000 0.00 0.00 0.00 3.86
4859 7312 3.936902 TCGATTAATTTGCGTACCTGC 57.063 42.857 0.00 0.00 0.00 4.85
4893 7346 8.383619 GCATTCGCGATAGATTGTTATAGAATT 58.616 33.333 10.88 0.00 39.76 2.17
4898 7351 6.386654 TCTGCATTCGCGATAGATTGTTATA 58.613 36.000 10.88 0.00 42.97 0.98
4954 7407 4.635765 CAGACGCCCAATTCTCTTTCAATA 59.364 41.667 0.00 0.00 0.00 1.90
4955 7408 3.441572 CAGACGCCCAATTCTCTTTCAAT 59.558 43.478 0.00 0.00 0.00 2.57
4956 7409 2.813754 CAGACGCCCAATTCTCTTTCAA 59.186 45.455 0.00 0.00 0.00 2.69
4957 7410 2.426522 CAGACGCCCAATTCTCTTTCA 58.573 47.619 0.00 0.00 0.00 2.69
4958 7411 1.131315 GCAGACGCCCAATTCTCTTTC 59.869 52.381 0.00 0.00 0.00 2.62
4970 7423 0.657368 CGAACAACAAAGCAGACGCC 60.657 55.000 0.00 0.00 39.83 5.68
5035 7488 4.585879 TGTACTCCATTTCTGTTAAGCCC 58.414 43.478 0.00 0.00 0.00 5.19
5044 7497 5.765182 CCAGTGAACTTTGTACTCCATTTCT 59.235 40.000 0.00 0.00 0.00 2.52
5050 7503 7.156673 TGTAATACCAGTGAACTTTGTACTCC 58.843 38.462 0.00 0.00 0.00 3.85
5051 7504 8.597662 TTGTAATACCAGTGAACTTTGTACTC 57.402 34.615 0.00 0.00 0.00 2.59
5052 7505 7.172703 GCTTGTAATACCAGTGAACTTTGTACT 59.827 37.037 0.00 0.00 0.00 2.73
5053 7506 7.041644 TGCTTGTAATACCAGTGAACTTTGTAC 60.042 37.037 0.00 0.00 0.00 2.90
5054 7507 6.993308 TGCTTGTAATACCAGTGAACTTTGTA 59.007 34.615 0.00 0.00 0.00 2.41
5133 8590 1.840181 GATGTCGAGCATTCGTAGCA 58.160 50.000 0.00 0.00 46.72 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.