Multiple sequence alignment - TraesCS3A01G409600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G409600 chr3A 100.000 2851 0 0 1 2851 654061841 654064691 0 5265
1 TraesCS3A01G409600 chr3A 88.945 1791 154 11 11 1760 262507273 262509060 0 2170
2 TraesCS3A01G409600 chr4B 90.084 2874 230 22 16 2845 588779059 588781921 0 3677
3 TraesCS3A01G409600 chr4B 88.423 2859 281 37 11 2845 564187403 564184571 0 3400
4 TraesCS3A01G409600 chr4B 88.756 2766 252 21 118 2841 549273934 549271186 0 3330
5 TraesCS3A01G409600 chr4B 87.731 2869 293 36 11 2844 650195112 650192268 0 3293
6 TraesCS3A01G409600 chr4B 87.013 693 53 9 1 656 393164653 393163961 0 747
7 TraesCS3A01G409600 chr2B 89.885 2877 233 22 20 2851 385532317 385529454 0 3648
8 TraesCS3A01G409600 chr2B 87.764 2844 257 39 11 2845 72759208 72761969 0 3240
9 TraesCS3A01G409600 chr3D 89.920 2867 221 22 16 2839 519069469 519066628 0 3631
10 TraesCS3A01G409600 chr5D 91.861 2617 179 16 11 2595 347368279 347370893 0 3622
11 TraesCS3A01G409600 chr5D 89.789 2135 165 12 11 2123 8436449 8438552 0 2686
12 TraesCS3A01G409600 chr5B 89.611 2878 243 24 11 2844 635364788 635361923 0 3607
13 TraesCS3A01G409600 chr5B 89.214 2874 253 19 11 2841 121640651 121637792 0 3537
14 TraesCS3A01G409600 chr5B 90.412 2357 198 22 500 2845 315915171 315912832 0 3075
15 TraesCS3A01G409600 chr1D 90.358 2790 205 20 11 2759 399092064 399089298 0 3603
16 TraesCS3A01G409600 chr1D 89.594 788 43 7 16 765 38372843 38372057 0 965
17 TraesCS3A01G409600 chr2A 88.862 2891 249 35 11 2841 772245757 772242880 0 3487
18 TraesCS3A01G409600 chr4D 88.669 2824 245 36 16 2810 303072535 303075312 0 3373
19 TraesCS3A01G409600 chr4D 89.153 1180 87 14 11 1151 17233254 17234431 0 1432
20 TraesCS3A01G409600 chr6B 88.122 2854 289 30 20 2843 521149613 521146780 0 3347
21 TraesCS3A01G409600 chr6B 85.033 1196 127 25 11 1184 332421870 332423035 0 1170
22 TraesCS3A01G409600 chr6B 85.274 1005 99 24 11 988 154818311 154819293 0 990
23 TraesCS3A01G409600 chr4A 88.107 2842 287 35 20 2845 574554568 574551762 0 3328
24 TraesCS3A01G409600 chr2D 89.292 1849 168 17 11 1839 388078952 388077114 0 2290
25 TraesCS3A01G409600 chr1B 88.564 1128 79 19 11 1095 669787180 669788300 0 1323


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G409600 chr3A 654061841 654064691 2850 False 5265 5265 100.000 1 2851 1 chr3A.!!$F2 2850
1 TraesCS3A01G409600 chr3A 262507273 262509060 1787 False 2170 2170 88.945 11 1760 1 chr3A.!!$F1 1749
2 TraesCS3A01G409600 chr4B 588779059 588781921 2862 False 3677 3677 90.084 16 2845 1 chr4B.!!$F1 2829
3 TraesCS3A01G409600 chr4B 564184571 564187403 2832 True 3400 3400 88.423 11 2845 1 chr4B.!!$R3 2834
4 TraesCS3A01G409600 chr4B 549271186 549273934 2748 True 3330 3330 88.756 118 2841 1 chr4B.!!$R2 2723
5 TraesCS3A01G409600 chr4B 650192268 650195112 2844 True 3293 3293 87.731 11 2844 1 chr4B.!!$R4 2833
6 TraesCS3A01G409600 chr4B 393163961 393164653 692 True 747 747 87.013 1 656 1 chr4B.!!$R1 655
7 TraesCS3A01G409600 chr2B 385529454 385532317 2863 True 3648 3648 89.885 20 2851 1 chr2B.!!$R1 2831
8 TraesCS3A01G409600 chr2B 72759208 72761969 2761 False 3240 3240 87.764 11 2845 1 chr2B.!!$F1 2834
9 TraesCS3A01G409600 chr3D 519066628 519069469 2841 True 3631 3631 89.920 16 2839 1 chr3D.!!$R1 2823
10 TraesCS3A01G409600 chr5D 347368279 347370893 2614 False 3622 3622 91.861 11 2595 1 chr5D.!!$F2 2584
11 TraesCS3A01G409600 chr5D 8436449 8438552 2103 False 2686 2686 89.789 11 2123 1 chr5D.!!$F1 2112
12 TraesCS3A01G409600 chr5B 635361923 635364788 2865 True 3607 3607 89.611 11 2844 1 chr5B.!!$R3 2833
13 TraesCS3A01G409600 chr5B 121637792 121640651 2859 True 3537 3537 89.214 11 2841 1 chr5B.!!$R1 2830
14 TraesCS3A01G409600 chr5B 315912832 315915171 2339 True 3075 3075 90.412 500 2845 1 chr5B.!!$R2 2345
15 TraesCS3A01G409600 chr1D 399089298 399092064 2766 True 3603 3603 90.358 11 2759 1 chr1D.!!$R2 2748
16 TraesCS3A01G409600 chr1D 38372057 38372843 786 True 965 965 89.594 16 765 1 chr1D.!!$R1 749
17 TraesCS3A01G409600 chr2A 772242880 772245757 2877 True 3487 3487 88.862 11 2841 1 chr2A.!!$R1 2830
18 TraesCS3A01G409600 chr4D 303072535 303075312 2777 False 3373 3373 88.669 16 2810 1 chr4D.!!$F2 2794
19 TraesCS3A01G409600 chr4D 17233254 17234431 1177 False 1432 1432 89.153 11 1151 1 chr4D.!!$F1 1140
20 TraesCS3A01G409600 chr6B 521146780 521149613 2833 True 3347 3347 88.122 20 2843 1 chr6B.!!$R1 2823
21 TraesCS3A01G409600 chr6B 332421870 332423035 1165 False 1170 1170 85.033 11 1184 1 chr6B.!!$F2 1173
22 TraesCS3A01G409600 chr6B 154818311 154819293 982 False 990 990 85.274 11 988 1 chr6B.!!$F1 977
23 TraesCS3A01G409600 chr4A 574551762 574554568 2806 True 3328 3328 88.107 20 2845 1 chr4A.!!$R1 2825
24 TraesCS3A01G409600 chr2D 388077114 388078952 1838 True 2290 2290 89.292 11 1839 1 chr2D.!!$R1 1828
25 TraesCS3A01G409600 chr1B 669787180 669788300 1120 False 1323 1323 88.564 11 1095 1 chr1B.!!$F1 1084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 81 0.523335 GCTCGCATCGCCGAAAAATT 60.523 50.0 0.00 0.0 36.72 1.82 F
1555 1782 0.692419 ATCGAGGTCCTTGATGGCCT 60.692 55.0 19.49 0.0 42.40 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1810 0.034863 GGACGGGGTGAAATGGCTTA 60.035 55.0 0.0 0.0 0.0 3.09 R
2646 2918 0.238289 CCAAGCGACACATGAACACC 59.762 55.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 1.384989 CGTGCGACTAGGGAGATGGT 61.385 60.000 0.00 0.00 0.00 3.55
77 81 0.523335 GCTCGCATCGCCGAAAAATT 60.523 50.000 0.00 0.00 36.72 1.82
124 128 0.754472 CGGAGTCCGCCCCTATTTAA 59.246 55.000 20.50 0.00 41.17 1.52
295 323 2.751436 TTCTACGACCGTCCCCCG 60.751 66.667 0.00 0.00 0.00 5.73
346 376 2.027192 TGAGTTCAATCCCCCTTTCTCG 60.027 50.000 0.00 0.00 0.00 4.04
467 543 3.857052 TGTAGGGTTAGATGTTCAAGCG 58.143 45.455 0.00 0.00 0.00 4.68
551 690 7.348201 GTGCTTAGATATGTGATTTGTAGCAC 58.652 38.462 0.00 0.00 41.02 4.40
634 806 4.084328 GCGATGAACCATGTGCTTAGTATC 60.084 45.833 0.00 0.00 0.00 2.24
710 887 1.753073 CCTGCTTTCATGGATTGTCCC 59.247 52.381 0.00 0.00 35.03 4.46
719 896 1.745232 TGGATTGTCCCGTATGTTGC 58.255 50.000 0.00 0.00 35.03 4.17
765 942 3.699538 TGCTACGATTGTAGGACATGACT 59.300 43.478 19.70 0.00 46.72 3.41
766 943 4.045104 GCTACGATTGTAGGACATGACTG 58.955 47.826 19.70 0.00 46.72 3.51
784 961 1.128136 CTGCGCAGACACAAGATCTTG 59.872 52.381 33.66 29.74 45.58 3.02
798 975 3.791320 AGATCTTGGACAGACCCTTGTA 58.209 45.455 0.00 0.00 38.00 2.41
834 1011 4.012374 AGTTTGCTCCATCATTTGTCGAT 58.988 39.130 0.00 0.00 0.00 3.59
844 1021 4.519540 TCATTTGTCGATGACTCACAGA 57.480 40.909 0.00 0.00 31.35 3.41
884 1061 1.542472 TGATTCAGAGGTGTTCGCGTA 59.458 47.619 5.77 0.00 0.00 4.42
908 1085 4.100035 TGATTCTGTCTATGTGCCAGTAGG 59.900 45.833 0.00 0.00 38.23 3.18
937 1144 2.810852 GAGCAAACTTCTACTGCTGCTT 59.189 45.455 0.00 0.00 46.19 3.91
1044 1269 6.209192 TGTCCACATTTGTGCTGAATAAGATT 59.791 34.615 5.15 0.00 44.34 2.40
1275 1500 1.871418 TAGTTCTGGAGGCAGAGCAT 58.129 50.000 0.00 0.00 35.30 3.79
1303 1528 2.636830 GCCATGTCACAGTTAGCTCAT 58.363 47.619 0.00 0.00 0.00 2.90
1330 1555 5.339530 CCCTCTTCCTTTTCATACTGTCCAT 60.340 44.000 0.00 0.00 0.00 3.41
1426 1651 2.079158 CAGCACACCCATACAGAACTG 58.921 52.381 0.00 0.00 0.00 3.16
1555 1782 0.692419 ATCGAGGTCCTTGATGGCCT 60.692 55.000 19.49 0.00 42.40 5.19
1569 1796 1.967535 GGCCTTGACAAGCCCTTTC 59.032 57.895 7.96 0.00 43.76 2.62
1574 1801 3.160269 CCTTGACAAGCCCTTTCAGAAT 58.840 45.455 9.85 0.00 0.00 2.40
1583 1810 3.012161 AGCCCTTTCAGAATCCCTTTGAT 59.988 43.478 0.00 0.00 34.22 2.57
1593 1820 6.322201 TCAGAATCCCTTTGATAAGCCATTTC 59.678 38.462 0.00 0.00 31.83 2.17
1678 1908 1.933853 CAGCATAACTAAGGCGGTGAC 59.066 52.381 0.00 0.00 0.00 3.67
1755 1985 1.126948 TGGCACTGTCATGACCCAGA 61.127 55.000 22.85 3.37 32.93 3.86
1850 2081 3.414272 GCCATGGCAGACGCTTAG 58.586 61.111 32.08 0.00 41.49 2.18
1880 2112 3.007920 CTCAGGAGCTGGCTGGGT 61.008 66.667 0.00 0.00 31.51 4.51
1928 2161 0.749454 GTGAGTGTGCATGATCCCCC 60.749 60.000 0.00 0.00 0.00 5.40
2027 2272 7.624360 TTGATGGTCTGTATATTTTGGTGAC 57.376 36.000 0.00 0.00 0.00 3.67
2028 2273 6.716284 TGATGGTCTGTATATTTTGGTGACA 58.284 36.000 0.00 0.00 39.83 3.58
2106 2355 2.595750 TTTTGGATGTGGTGGTAGGG 57.404 50.000 0.00 0.00 0.00 3.53
2111 2360 2.193993 GGATGTGGTGGTAGGGTAACT 58.806 52.381 0.00 0.00 0.00 2.24
2133 2382 4.616553 TCCATGGTAGTGCTAGGTAGAAA 58.383 43.478 12.58 0.00 0.00 2.52
2153 2402 5.764686 AGAAATTGCTATGCCGTATGATCAA 59.235 36.000 0.00 0.00 0.00 2.57
2168 2418 4.970662 TGATCAAGCATGCTTTACTTCC 57.029 40.909 30.07 15.55 33.42 3.46
2169 2419 4.592942 TGATCAAGCATGCTTTACTTCCT 58.407 39.130 30.07 7.30 33.42 3.36
2170 2420 4.637534 TGATCAAGCATGCTTTACTTCCTC 59.362 41.667 30.07 16.09 33.42 3.71
2231 2486 4.437930 GCTACTTGTGTGCTCCATTGATTC 60.438 45.833 0.00 0.00 0.00 2.52
2311 2566 3.460712 GGTAAGGCTCCAGGGGTTTATAA 59.539 47.826 0.00 0.00 0.00 0.98
2357 2612 5.595542 ACAAGTGGCATCATATAGCAACAAT 59.404 36.000 0.00 0.00 37.15 2.71
2422 2677 0.396974 TCCAACTGGGTGCAAAAGCT 60.397 50.000 0.00 0.00 38.11 3.74
2423 2678 0.465287 CCAACTGGGTGCAAAAGCTT 59.535 50.000 0.00 0.00 0.00 3.74
2436 2691 1.780503 AAAGCTTGGAGGCAACAGTT 58.219 45.000 0.00 0.00 41.41 3.16
2439 2694 2.944129 AGCTTGGAGGCAACAGTTTTA 58.056 42.857 0.00 0.00 41.41 1.52
2499 2765 2.850833 AGGAGGATCATCAGTTTGGGA 58.149 47.619 9.94 0.00 36.25 4.37
2501 2767 4.570926 AGGAGGATCATCAGTTTGGGATA 58.429 43.478 9.94 0.00 36.25 2.59
2513 2779 5.473504 TCAGTTTGGGATAAAGCTGAAGAAC 59.526 40.000 1.62 0.00 42.27 3.01
2514 2780 5.474876 CAGTTTGGGATAAAGCTGAAGAACT 59.525 40.000 0.00 0.00 39.86 3.01
2515 2781 6.015940 CAGTTTGGGATAAAGCTGAAGAACTT 60.016 38.462 0.00 0.00 39.86 2.66
2516 2782 6.207614 AGTTTGGGATAAAGCTGAAGAACTTC 59.792 38.462 7.51 7.51 39.91 3.01
2517 2783 5.241403 TGGGATAAAGCTGAAGAACTTCA 57.759 39.130 15.05 15.05 46.27 3.02
2645 2917 1.870383 GCCGTATGCAACCAAACGA 59.130 52.632 0.00 0.00 40.77 3.85
2646 2918 0.179200 GCCGTATGCAACCAAACGAG 60.179 55.000 0.00 0.00 40.77 4.18
2801 3074 3.197766 CAGGCTGGGTTGAGAAGTGTATA 59.802 47.826 6.61 0.00 0.00 1.47
2813 3086 5.069119 TGAGAAGTGTATACGATGCAGGAAT 59.931 40.000 0.00 0.00 0.00 3.01
2823 3096 3.058016 ACGATGCAGGAATTGTTCACAAG 60.058 43.478 0.00 0.00 39.47 3.16
2841 3114 2.124109 TTGAGCCAAACACGCCCA 60.124 55.556 0.00 0.00 0.00 5.36
2844 3117 0.250945 TGAGCCAAACACGCCCATAA 60.251 50.000 0.00 0.00 0.00 1.90
2846 3119 1.065551 GAGCCAAACACGCCCATAATC 59.934 52.381 0.00 0.00 0.00 1.75
2847 3120 1.102978 GCCAAACACGCCCATAATCT 58.897 50.000 0.00 0.00 0.00 2.40
2848 3121 1.202290 GCCAAACACGCCCATAATCTG 60.202 52.381 0.00 0.00 0.00 2.90
2850 3123 2.491693 CCAAACACGCCCATAATCTGTT 59.508 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 81 1.910580 GAGCCGAAATCCTCCCACCA 61.911 60.000 0.00 0.00 0.00 4.17
192 198 3.414700 CTGCTCGTCGGTGCCAAC 61.415 66.667 8.26 0.00 31.76 3.77
295 323 2.202987 CTGCAGCTCGGGGATGAC 60.203 66.667 0.00 0.00 32.28 3.06
346 376 5.104900 TCAAACCCTAGCTAGAAGGAACATC 60.105 44.000 22.70 0.00 36.08 3.06
446 521 3.259876 ACGCTTGAACATCTAACCCTACA 59.740 43.478 0.00 0.00 0.00 2.74
467 543 7.222872 TCTACTACTAATCTAGCCTACCACAC 58.777 42.308 0.00 0.00 0.00 3.82
551 690 5.530519 ACATACATCTACAACAAACAGCG 57.469 39.130 0.00 0.00 0.00 5.18
710 887 0.930310 AGCATAGCACGCAACATACG 59.070 50.000 0.00 0.00 0.00 3.06
719 896 4.433413 CGCATTGATAGTAAGCATAGCACG 60.433 45.833 0.00 0.00 0.00 5.34
765 942 1.150827 CAAGATCTTGTGTCTGCGCA 58.849 50.000 24.65 10.98 35.92 6.09
766 943 0.445436 CCAAGATCTTGTGTCTGCGC 59.555 55.000 29.03 0.00 38.85 6.09
784 961 2.677037 CGGACATTACAAGGGTCTGTCC 60.677 54.545 14.66 14.66 46.45 4.02
798 975 2.017049 GCAAACTGGCTATCGGACATT 58.983 47.619 0.00 0.00 29.39 2.71
834 1011 4.407365 TCTTGGACATAGTCTGTGAGTCA 58.593 43.478 3.27 0.00 38.54 3.41
844 1021 2.092753 CAGGTGCCATCTTGGACATAGT 60.093 50.000 0.00 0.00 40.96 2.12
928 1105 2.732658 GGCAGCAAAAGCAGCAGT 59.267 55.556 7.14 0.00 0.00 4.40
1044 1269 4.284490 ACTCCACTAAAGATGAGCTCACAA 59.716 41.667 20.97 0.00 0.00 3.33
1275 1500 0.389296 CTGTGACATGGCCGACGTAA 60.389 55.000 0.00 0.00 0.00 3.18
1303 1528 6.296259 GGACAGTATGAAAAGGAAGAGGGTTA 60.296 42.308 0.00 0.00 39.69 2.85
1330 1555 5.189736 AGTTGTGATTAGGAGTAGGCAATGA 59.810 40.000 0.00 0.00 0.00 2.57
1408 1633 0.804989 GCAGTTCTGTATGGGTGTGC 59.195 55.000 1.78 0.00 0.00 4.57
1555 1782 3.157087 GGATTCTGAAAGGGCTTGTCAA 58.843 45.455 0.00 0.00 0.00 3.18
1569 1796 6.097270 TGAAATGGCTTATCAAAGGGATTCTG 59.903 38.462 0.00 0.00 37.44 3.02
1574 1801 4.023291 GGTGAAATGGCTTATCAAAGGGA 58.977 43.478 0.00 0.00 32.98 4.20
1583 1810 0.034863 GGACGGGGTGAAATGGCTTA 60.035 55.000 0.00 0.00 0.00 3.09
1593 1820 1.070758 CTTCCTATCATGGACGGGGTG 59.929 57.143 0.00 0.00 35.58 4.61
1678 1908 0.734889 GATGGATGTTGCCACCTTCG 59.265 55.000 0.00 0.00 41.56 3.79
1755 1985 1.302033 CCTTGTCGCTGAAGCCACT 60.302 57.895 1.81 0.00 37.91 4.00
1776 2006 3.810812 GCTGAGAGCTGCCATGAC 58.189 61.111 0.00 0.00 38.45 3.06
1850 2081 1.302832 CCTGAGCCACAACACCCTC 60.303 63.158 0.00 0.00 0.00 4.30
2027 2272 7.683437 TCGTGAGGAGTTAGTATATACCATG 57.317 40.000 9.32 3.85 0.00 3.66
2028 2273 8.107729 TCATCGTGAGGAGTTAGTATATACCAT 58.892 37.037 9.32 0.00 0.00 3.55
2043 2292 2.179427 AGTTCACCATCATCGTGAGGA 58.821 47.619 2.03 0.00 41.10 3.71
2106 2355 3.705072 ACCTAGCACTACCATGGAGTTAC 59.295 47.826 21.47 11.43 0.00 2.50
2111 2360 3.965470 TCTACCTAGCACTACCATGGA 57.035 47.619 21.47 0.67 0.00 3.41
2133 2382 3.438087 GCTTGATCATACGGCATAGCAAT 59.562 43.478 0.00 0.00 0.00 3.56
2153 2402 4.224818 AGAAGAGAGGAAGTAAAGCATGCT 59.775 41.667 16.30 16.30 0.00 3.79
2168 2418 6.708054 ACAAACAACAATGGAGTAGAAGAGAG 59.292 38.462 0.00 0.00 0.00 3.20
2169 2419 6.483307 CACAAACAACAATGGAGTAGAAGAGA 59.517 38.462 0.00 0.00 0.00 3.10
2170 2420 6.260936 ACACAAACAACAATGGAGTAGAAGAG 59.739 38.462 0.00 0.00 0.00 2.85
2311 2566 2.731572 CACTGGCTTCTTCCCATGAAT 58.268 47.619 0.00 0.00 0.00 2.57
2357 2612 3.995636 AGTCTTGAACCCTCTATGGCTA 58.004 45.455 0.00 0.00 0.00 3.93
2422 2677 5.242838 CCACTATTAAAACTGTTGCCTCCAA 59.757 40.000 0.00 0.00 0.00 3.53
2423 2678 4.764823 CCACTATTAAAACTGTTGCCTCCA 59.235 41.667 0.00 0.00 0.00 3.86
2436 2691 4.202631 ACCTCCAACCTTGCCACTATTAAA 60.203 41.667 0.00 0.00 0.00 1.52
2439 2694 1.710809 ACCTCCAACCTTGCCACTATT 59.289 47.619 0.00 0.00 0.00 1.73
2513 2779 2.322355 ACTGGGCGAAGATGATGAAG 57.678 50.000 0.00 0.00 0.00 3.02
2514 2780 2.027285 TGAACTGGGCGAAGATGATGAA 60.027 45.455 0.00 0.00 0.00 2.57
2515 2781 1.554617 TGAACTGGGCGAAGATGATGA 59.445 47.619 0.00 0.00 0.00 2.92
2516 2782 2.028420 TGAACTGGGCGAAGATGATG 57.972 50.000 0.00 0.00 0.00 3.07
2517 2783 2.804572 CGATGAACTGGGCGAAGATGAT 60.805 50.000 0.00 0.00 0.00 2.45
2518 2784 1.471501 CGATGAACTGGGCGAAGATGA 60.472 52.381 0.00 0.00 0.00 2.92
2595 2867 4.020839 TGTGCTTACCTTGTACCCTAGTTC 60.021 45.833 0.00 0.00 0.00 3.01
2645 2917 1.229428 CAAGCGACACATGAACACCT 58.771 50.000 0.00 0.00 0.00 4.00
2646 2918 0.238289 CCAAGCGACACATGAACACC 59.762 55.000 0.00 0.00 0.00 4.16
2801 3074 2.503331 TGTGAACAATTCCTGCATCGT 58.497 42.857 0.00 0.00 0.00 3.73
2813 3086 3.256879 TGTTTGGCTCAACTTGTGAACAA 59.743 39.130 0.00 0.00 35.22 2.83
2823 3096 1.805428 ATGGGCGTGTTTGGCTCAAC 61.805 55.000 0.00 0.00 45.38 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.