Multiple sequence alignment - TraesCS3A01G409400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G409400 chr3A 100.000 7273 0 0 1 7273 653954548 653947276 0.000000e+00 13431
1 TraesCS3A01G409400 chr3A 96.319 5324 170 23 1963 7273 42780163 42785473 0.000000e+00 8722
2 TraesCS3A01G409400 chr3A 96.791 1776 47 7 1 1770 745769861 745768090 0.000000e+00 2955
3 TraesCS3A01G409400 chr3A 95.532 1768 63 10 1 1764 711564945 711566700 0.000000e+00 2813
4 TraesCS3A01G409400 chr3A 98.104 211 3 1 1758 1967 653953483 653953273 4.150000e-97 366
5 TraesCS3A01G409400 chr3A 97.156 211 4 2 1758 1967 711566002 711566211 8.970000e-94 355
6 TraesCS3A01G409400 chr3A 96.729 214 3 2 1758 1967 745768797 745768584 3.230000e-93 353
7 TraesCS3A01G409400 chr6A 96.821 7299 191 24 1 7273 184592612 184599895 0.000000e+00 12155
8 TraesCS3A01G409400 chr6A 96.197 1867 42 12 1 1847 494438721 494436864 0.000000e+00 3027
9 TraesCS3A01G409400 chr4A 97.050 5322 138 10 1963 7273 37340474 37335161 0.000000e+00 8940
10 TraesCS3A01G409400 chr4A 96.206 5324 180 16 1963 7273 593057887 593052573 0.000000e+00 8693
11 TraesCS3A01G409400 chr4A 96.204 5322 183 15 1963 7273 592769809 592764496 0.000000e+00 8691
12 TraesCS3A01G409400 chr2A 96.689 5316 161 11 1963 7273 619869860 619875165 0.000000e+00 8828
13 TraesCS3A01G409400 chr2A 96.674 1774 46 11 1 1770 619868336 619870100 0.000000e+00 2937
14 TraesCS3A01G409400 chr2A 95.779 1777 62 11 1 1770 733083689 733081919 0.000000e+00 2854
15 TraesCS3A01G409400 chr2A 97.619 210 3 2 1758 1965 619869399 619869608 6.940000e-95 359
16 TraesCS3A01G409400 chr2A 97.170 212 4 2 1758 1967 614230219 614230008 2.500000e-94 357
17 TraesCS3A01G409400 chr3B 96.357 5325 172 19 1963 7273 462505108 462499792 0.000000e+00 8739
18 TraesCS3A01G409400 chr4B 96.279 5321 179 16 1963 7273 14717623 14712312 0.000000e+00 8711
19 TraesCS3A01G409400 chr2B 96.239 5318 177 19 1963 7273 99559592 99564893 0.000000e+00 8691
20 TraesCS3A01G409400 chr7A 96.070 1781 55 12 1 1770 722663451 722665227 0.000000e+00 2887
21 TraesCS3A01G409400 chr7A 97.608 209 3 2 1758 1964 636923215 636923423 2.500000e-94 357
22 TraesCS3A01G409400 chr1A 96.043 1769 62 6 1 1764 365644624 365642859 0.000000e+00 2872
23 TraesCS3A01G409400 chr1A 95.391 1779 61 10 1 1770 10695166 10693400 0.000000e+00 2811
24 TraesCS3A01G409400 chr1A 97.642 212 3 2 1758 1967 21061599 21061810 5.360000e-96 363
25 TraesCS3A01G409400 chr1A 97.630 211 3 2 1758 1966 10694102 10693892 1.930000e-95 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G409400 chr3A 653947276 653954548 7272 True 6898.500000 13431 99.0520 1 7273 2 chr3A.!!$R1 7272
1 TraesCS3A01G409400 chr3A 42780163 42785473 5310 False 8722.000000 8722 96.3190 1963 7273 1 chr3A.!!$F1 5310
2 TraesCS3A01G409400 chr3A 745768090 745769861 1771 True 1654.000000 2955 96.7600 1 1967 2 chr3A.!!$R2 1966
3 TraesCS3A01G409400 chr3A 711564945 711566700 1755 False 1584.000000 2813 96.3440 1 1967 2 chr3A.!!$F2 1966
4 TraesCS3A01G409400 chr6A 184592612 184599895 7283 False 12155.000000 12155 96.8210 1 7273 1 chr6A.!!$F1 7272
5 TraesCS3A01G409400 chr6A 494436864 494438721 1857 True 3027.000000 3027 96.1970 1 1847 1 chr6A.!!$R1 1846
6 TraesCS3A01G409400 chr4A 37335161 37340474 5313 True 8940.000000 8940 97.0500 1963 7273 1 chr4A.!!$R1 5310
7 TraesCS3A01G409400 chr4A 593052573 593057887 5314 True 8693.000000 8693 96.2060 1963 7273 1 chr4A.!!$R3 5310
8 TraesCS3A01G409400 chr4A 592764496 592769809 5313 True 8691.000000 8691 96.2040 1963 7273 1 chr4A.!!$R2 5310
9 TraesCS3A01G409400 chr2A 619868336 619875165 6829 False 4041.333333 8828 96.9940 1 7273 3 chr2A.!!$F1 7272
10 TraesCS3A01G409400 chr2A 733081919 733083689 1770 True 2854.000000 2854 95.7790 1 1770 1 chr2A.!!$R2 1769
11 TraesCS3A01G409400 chr3B 462499792 462505108 5316 True 8739.000000 8739 96.3570 1963 7273 1 chr3B.!!$R1 5310
12 TraesCS3A01G409400 chr4B 14712312 14717623 5311 True 8711.000000 8711 96.2790 1963 7273 1 chr4B.!!$R1 5310
13 TraesCS3A01G409400 chr2B 99559592 99564893 5301 False 8691.000000 8691 96.2390 1963 7273 1 chr2B.!!$F1 5310
14 TraesCS3A01G409400 chr7A 722663451 722665227 1776 False 2887.000000 2887 96.0700 1 1770 1 chr7A.!!$F2 1769
15 TraesCS3A01G409400 chr1A 365642859 365644624 1765 True 2872.000000 2872 96.0430 1 1764 1 chr1A.!!$R1 1763
16 TraesCS3A01G409400 chr1A 10693400 10695166 1766 True 1586.000000 2811 96.5105 1 1966 2 chr1A.!!$R2 1965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.811616 GGCTGTCCCTATGTTCTGCG 60.812 60.000 0.00 0.0 0.00 5.18 F
1856 1877 0.037882 TCTGGAAGTCAGCTGCTTCG 60.038 55.000 28.58 21.3 42.23 3.79 F
2120 2584 0.175302 CTGGAGAAGCTGTCGCATCT 59.825 55.000 0.00 0.0 45.99 2.90 F
2604 3518 0.179045 GATAAGGGCATCACCAGCGT 60.179 55.000 0.00 0.0 42.05 5.07 F
2724 3638 2.168496 CGGACCTCACTAAGTTCCTGA 58.832 52.381 0.00 0.0 0.00 3.86 F
4531 5460 1.067425 GCAGCCATCAATGCAAACTGA 60.067 47.619 0.00 0.0 42.11 3.41 F
5217 6180 0.322975 GAAGCAGAGTCTCAGGGCAA 59.677 55.000 1.94 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 1954 0.037160 TGTGTCATCAGCATGCCACT 59.963 50.000 15.66 0.0 34.76 4.00 R
2724 3638 1.200760 TGTGGCTGGTAGGACTGCAT 61.201 55.000 0.00 0.0 37.08 3.96 R
3130 4044 1.280421 GCTTCTCCTGGTCCATGTTCT 59.720 52.381 0.00 0.0 0.00 3.01 R
4403 5332 2.035066 GCACAGCTCATTGACCACTTTT 59.965 45.455 0.00 0.0 0.00 2.27 R
4721 5654 1.220236 CTCCTCATCCTCCTCCTCCTT 59.780 57.143 0.00 0.0 0.00 3.36 R
5629 6592 0.251354 TGGTTGGCTCTCTGCTCATC 59.749 55.000 0.00 0.0 42.39 2.92 R
6813 7780 0.601046 CTCGAAAGGTCACAGCAGCA 60.601 55.000 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.811616 GGCTGTCCCTATGTTCTGCG 60.812 60.000 0.00 0.00 0.00 5.18
78 80 9.070179 TCTACATACTGTTCAGTTACACAAGTA 57.930 33.333 10.74 0.50 0.00 2.24
637 644 1.897560 GCTTTGTGCAACTAGGACCT 58.102 50.000 0.00 0.00 42.31 3.85
736 743 7.767250 TGTTGTGGATATGGTTGTTTTCATA 57.233 32.000 0.00 0.00 0.00 2.15
762 769 1.559682 TCCCCTCATGTTCAACTAGGC 59.440 52.381 0.00 0.00 0.00 3.93
808 817 3.754965 TCACTGAGCTTGTTGCCTTTAT 58.245 40.909 0.00 0.00 44.23 1.40
917 927 2.065899 TTGCACAAGGTTTACTGCCT 57.934 45.000 0.00 0.00 38.11 4.75
1167 1183 2.433318 GAAGTCAGCCGCTTCGCT 60.433 61.111 0.00 0.00 40.65 4.93
1383 1402 3.501828 TGTTGTAAAGCGGACTAGACGTA 59.498 43.478 0.00 0.00 0.00 3.57
1488 1509 7.395190 AGTGATTAAATTATGCAGCAGTTCA 57.605 32.000 0.00 0.00 0.00 3.18
1526 1547 8.514330 TGTTTTTAGTCTGTCAATAACAACCT 57.486 30.769 0.00 0.00 37.45 3.50
1527 1548 8.962679 TGTTTTTAGTCTGTCAATAACAACCTT 58.037 29.630 0.00 0.00 37.45 3.50
1528 1549 9.797556 GTTTTTAGTCTGTCAATAACAACCTTT 57.202 29.630 0.00 0.00 37.45 3.11
1530 1551 9.796120 TTTTAGTCTGTCAATAACAACCTTTTG 57.204 29.630 0.00 0.00 37.45 2.44
1532 1553 9.616156 TTAGTCTGTCAATAACAACCTTTTGTA 57.384 29.630 0.00 0.00 45.69 2.41
1533 1554 8.154649 AGTCTGTCAATAACAACCTTTTGTAG 57.845 34.615 0.00 0.00 45.69 2.74
1534 1555 7.773690 AGTCTGTCAATAACAACCTTTTGTAGT 59.226 33.333 0.00 0.00 45.69 2.73
1535 1556 8.403236 GTCTGTCAATAACAACCTTTTGTAGTT 58.597 33.333 0.00 0.00 45.69 2.24
1536 1557 8.402472 TCTGTCAATAACAACCTTTTGTAGTTG 58.598 33.333 1.54 1.54 45.69 3.16
1537 1558 8.282455 TGTCAATAACAACCTTTTGTAGTTGA 57.718 30.769 9.66 10.82 45.69 3.18
1539 1560 8.282455 TCAATAACAACCTTTTGTAGTTGACA 57.718 30.769 9.66 0.00 45.69 3.58
1540 1561 8.908903 TCAATAACAACCTTTTGTAGTTGACAT 58.091 29.630 9.66 0.37 45.69 3.06
1541 1562 9.180678 CAATAACAACCTTTTGTAGTTGACATC 57.819 33.333 9.66 0.00 45.69 3.06
1542 1563 8.691661 ATAACAACCTTTTGTAGTTGACATCT 57.308 30.769 9.66 0.00 45.69 2.90
1543 1564 6.619801 ACAACCTTTTGTAGTTGACATCTC 57.380 37.500 9.66 0.00 44.53 2.75
1544 1565 6.357367 ACAACCTTTTGTAGTTGACATCTCT 58.643 36.000 9.66 0.00 44.53 3.10
1545 1566 7.506114 ACAACCTTTTGTAGTTGACATCTCTA 58.494 34.615 9.66 0.00 44.53 2.43
1546 1567 7.657761 ACAACCTTTTGTAGTTGACATCTCTAG 59.342 37.037 9.66 0.00 44.53 2.43
1547 1568 7.304497 ACCTTTTGTAGTTGACATCTCTAGT 57.696 36.000 0.00 0.00 38.07 2.57
1548 1569 7.379750 ACCTTTTGTAGTTGACATCTCTAGTC 58.620 38.462 0.00 0.00 38.07 2.59
1549 1570 7.015292 ACCTTTTGTAGTTGACATCTCTAGTCA 59.985 37.037 0.00 0.00 43.72 3.41
1550 1571 8.037758 CCTTTTGTAGTTGACATCTCTAGTCAT 58.962 37.037 0.00 0.00 44.66 3.06
1555 1576 9.408648 TGTAGTTGACATCTCTAGTCATATTGA 57.591 33.333 0.00 0.00 44.66 2.57
1581 1602 9.855021 ATTTAAATACAGTTGACATTAGTTGGC 57.145 29.630 0.00 0.00 0.00 4.52
1582 1603 6.892658 AAATACAGTTGACATTAGTTGGCA 57.107 33.333 0.00 0.00 43.47 4.92
1583 1604 7.466746 AAATACAGTTGACATTAGTTGGCAT 57.533 32.000 0.00 0.00 44.92 4.40
1584 1605 7.466746 AATACAGTTGACATTAGTTGGCATT 57.533 32.000 0.00 0.00 44.92 3.56
1585 1606 8.574251 AATACAGTTGACATTAGTTGGCATTA 57.426 30.769 0.00 0.00 44.92 1.90
1586 1607 6.500684 ACAGTTGACATTAGTTGGCATTAG 57.499 37.500 0.00 0.00 44.92 1.73
1587 1608 6.003950 ACAGTTGACATTAGTTGGCATTAGT 58.996 36.000 0.00 0.00 44.92 2.24
1588 1609 6.490040 ACAGTTGACATTAGTTGGCATTAGTT 59.510 34.615 0.00 0.00 44.92 2.24
1589 1610 6.803320 CAGTTGACATTAGTTGGCATTAGTTG 59.197 38.462 0.00 0.00 44.92 3.16
1590 1611 5.895636 TGACATTAGTTGGCATTAGTTGG 57.104 39.130 0.00 0.00 38.92 3.77
1591 1612 5.336372 TTGACATTAGTTGGCATTAGTTGGC 60.336 40.000 0.00 0.00 44.92 4.52
1602 1623 5.567138 GCATTAGTTGGCATCTTGTAGTT 57.433 39.130 2.98 0.00 0.00 2.24
1603 1624 5.573146 GCATTAGTTGGCATCTTGTAGTTC 58.427 41.667 2.98 0.00 0.00 3.01
1604 1625 5.123820 GCATTAGTTGGCATCTTGTAGTTCA 59.876 40.000 2.98 0.00 0.00 3.18
1605 1626 6.546395 CATTAGTTGGCATCTTGTAGTTCAC 58.454 40.000 2.98 0.00 0.00 3.18
1606 1627 4.357918 AGTTGGCATCTTGTAGTTCACT 57.642 40.909 0.00 0.00 0.00 3.41
1607 1628 5.483685 AGTTGGCATCTTGTAGTTCACTA 57.516 39.130 0.00 0.00 0.00 2.74
1608 1629 5.482908 AGTTGGCATCTTGTAGTTCACTAG 58.517 41.667 0.00 0.00 0.00 2.57
1609 1630 5.012148 AGTTGGCATCTTGTAGTTCACTAGT 59.988 40.000 0.00 0.00 32.51 2.57
1610 1631 5.483685 TGGCATCTTGTAGTTCACTAGTT 57.516 39.130 0.00 0.00 32.51 2.24
1611 1632 5.237815 TGGCATCTTGTAGTTCACTAGTTG 58.762 41.667 0.00 0.00 34.65 3.16
1612 1633 4.631813 GGCATCTTGTAGTTCACTAGTTGG 59.368 45.833 0.00 0.00 33.15 3.77
1613 1634 4.093556 GCATCTTGTAGTTCACTAGTTGGC 59.906 45.833 0.00 0.00 33.15 4.52
1614 1635 4.948341 TCTTGTAGTTCACTAGTTGGCA 57.052 40.909 0.00 0.00 32.51 4.92
1615 1636 5.483685 TCTTGTAGTTCACTAGTTGGCAT 57.516 39.130 0.00 0.00 32.51 4.40
1616 1637 5.479306 TCTTGTAGTTCACTAGTTGGCATC 58.521 41.667 0.00 0.00 32.51 3.91
1617 1638 5.246203 TCTTGTAGTTCACTAGTTGGCATCT 59.754 40.000 3.23 3.23 32.51 2.90
1618 1639 5.483685 TGTAGTTCACTAGTTGGCATCTT 57.516 39.130 2.98 0.00 0.00 2.40
1619 1640 5.865085 TGTAGTTCACTAGTTGGCATCTTT 58.135 37.500 2.98 0.00 0.00 2.52
1620 1641 6.296026 TGTAGTTCACTAGTTGGCATCTTTT 58.704 36.000 2.98 0.00 0.00 2.27
1621 1642 5.948992 AGTTCACTAGTTGGCATCTTTTC 57.051 39.130 2.98 0.00 0.00 2.29
1622 1643 5.376625 AGTTCACTAGTTGGCATCTTTTCA 58.623 37.500 2.98 0.00 0.00 2.69
1623 1644 6.006449 AGTTCACTAGTTGGCATCTTTTCAT 58.994 36.000 2.98 0.00 0.00 2.57
1624 1645 7.168219 AGTTCACTAGTTGGCATCTTTTCATA 58.832 34.615 2.98 0.00 0.00 2.15
1625 1646 7.335422 AGTTCACTAGTTGGCATCTTTTCATAG 59.665 37.037 2.98 0.00 0.00 2.23
1626 1647 6.711277 TCACTAGTTGGCATCTTTTCATAGT 58.289 36.000 2.98 0.00 0.00 2.12
1627 1648 7.168219 TCACTAGTTGGCATCTTTTCATAGTT 58.832 34.615 2.98 0.00 0.00 2.24
1628 1649 7.119699 TCACTAGTTGGCATCTTTTCATAGTTG 59.880 37.037 2.98 0.00 0.00 3.16
1629 1650 7.119699 CACTAGTTGGCATCTTTTCATAGTTGA 59.880 37.037 2.98 0.00 0.00 3.18
1630 1651 6.259550 AGTTGGCATCTTTTCATAGTTGAC 57.740 37.500 0.00 0.00 0.00 3.18
1631 1652 5.769662 AGTTGGCATCTTTTCATAGTTGACA 59.230 36.000 0.00 0.00 32.41 3.58
1632 1653 6.435277 AGTTGGCATCTTTTCATAGTTGACAT 59.565 34.615 0.00 0.00 33.92 3.06
1633 1654 6.441093 TGGCATCTTTTCATAGTTGACATC 57.559 37.500 0.00 0.00 29.95 3.06
1634 1655 5.945191 TGGCATCTTTTCATAGTTGACATCA 59.055 36.000 0.00 0.00 29.95 3.07
1635 1656 6.094464 TGGCATCTTTTCATAGTTGACATCAG 59.906 38.462 0.00 0.00 29.95 2.90
1636 1657 6.094603 GGCATCTTTTCATAGTTGACATCAGT 59.905 38.462 0.00 0.00 0.00 3.41
1637 1658 6.965500 GCATCTTTTCATAGTTGACATCAGTG 59.035 38.462 0.00 0.00 0.00 3.66
1638 1659 7.470079 CATCTTTTCATAGTTGACATCAGTGG 58.530 38.462 0.00 0.00 0.00 4.00
1639 1660 6.533730 TCTTTTCATAGTTGACATCAGTGGT 58.466 36.000 0.00 0.00 0.00 4.16
1640 1661 6.650807 TCTTTTCATAGTTGACATCAGTGGTC 59.349 38.462 0.00 0.00 35.83 4.02
1641 1662 5.482163 TTCATAGTTGACATCAGTGGTCA 57.518 39.130 0.00 0.00 43.12 4.02
1642 1663 5.682234 TCATAGTTGACATCAGTGGTCAT 57.318 39.130 3.45 0.00 44.11 3.06
1643 1664 6.053632 TCATAGTTGACATCAGTGGTCATT 57.946 37.500 3.45 0.00 44.11 2.57
1644 1665 6.475504 TCATAGTTGACATCAGTGGTCATTT 58.524 36.000 3.45 0.00 44.11 2.32
1645 1666 6.942005 TCATAGTTGACATCAGTGGTCATTTT 59.058 34.615 3.45 0.00 44.11 1.82
1646 1667 7.448161 TCATAGTTGACATCAGTGGTCATTTTT 59.552 33.333 3.45 0.00 44.11 1.94
1682 1703 4.928398 CTGGAGAAGCTGTCGCAT 57.072 55.556 0.00 0.00 39.10 4.73
1683 1704 2.675519 CTGGAGAAGCTGTCGCATC 58.324 57.895 0.00 0.00 39.10 3.91
1684 1705 0.175302 CTGGAGAAGCTGTCGCATCT 59.825 55.000 0.00 0.00 45.99 2.90
1685 1706 0.610174 TGGAGAAGCTGTCGCATCTT 59.390 50.000 0.00 0.00 43.61 2.40
1686 1707 1.285578 GGAGAAGCTGTCGCATCTTC 58.714 55.000 12.49 12.49 43.61 2.87
1687 1708 1.285578 GAGAAGCTGTCGCATCTTCC 58.714 55.000 15.15 7.46 43.61 3.46
1688 1709 0.459237 AGAAGCTGTCGCATCTTCCG 60.459 55.000 15.15 0.00 41.04 4.30
1689 1710 2.029904 GAAGCTGTCGCATCTTCCGC 62.030 60.000 10.41 0.00 39.10 5.54
1690 1711 2.786539 AAGCTGTCGCATCTTCCGCA 62.787 55.000 0.00 0.00 39.10 5.69
1691 1712 2.806856 GCTGTCGCATCTTCCGCAG 61.807 63.158 0.00 0.00 34.95 5.18
1692 1713 2.806856 CTGTCGCATCTTCCGCAGC 61.807 63.158 0.00 0.00 0.00 5.25
1693 1714 2.815211 GTCGCATCTTCCGCAGCA 60.815 61.111 0.00 0.00 0.00 4.41
1694 1715 2.510012 TCGCATCTTCCGCAGCAG 60.510 61.111 0.00 0.00 0.00 4.24
1695 1716 2.510012 CGCATCTTCCGCAGCAGA 60.510 61.111 0.00 0.00 0.00 4.26
1696 1717 1.886313 CGCATCTTCCGCAGCAGAT 60.886 57.895 0.00 0.00 0.00 2.90
1697 1718 1.647629 GCATCTTCCGCAGCAGATG 59.352 57.895 14.29 14.29 46.39 2.90
1710 1731 2.609427 GCAGATGCTGAGGTATGTGA 57.391 50.000 0.00 0.00 38.21 3.58
1711 1732 2.481854 GCAGATGCTGAGGTATGTGAG 58.518 52.381 0.00 0.00 38.21 3.51
1712 1733 2.158986 GCAGATGCTGAGGTATGTGAGT 60.159 50.000 0.00 0.00 38.21 3.41
1713 1734 3.681034 GCAGATGCTGAGGTATGTGAGTT 60.681 47.826 0.00 0.00 38.21 3.01
1714 1735 4.511527 CAGATGCTGAGGTATGTGAGTTT 58.488 43.478 0.00 0.00 32.25 2.66
1715 1736 4.940046 CAGATGCTGAGGTATGTGAGTTTT 59.060 41.667 0.00 0.00 32.25 2.43
1716 1737 5.413833 CAGATGCTGAGGTATGTGAGTTTTT 59.586 40.000 0.00 0.00 32.25 1.94
1753 1774 7.686438 TGAGCTATTTGAATAGTTCTTTGCA 57.314 32.000 20.75 5.85 44.59 4.08
1754 1775 8.109705 TGAGCTATTTGAATAGTTCTTTGCAA 57.890 30.769 20.75 0.00 44.59 4.08
1755 1776 8.575589 TGAGCTATTTGAATAGTTCTTTGCAAA 58.424 29.630 20.75 12.14 44.59 3.68
1756 1777 8.748380 AGCTATTTGAATAGTTCTTTGCAAAC 57.252 30.769 8.05 0.00 40.37 2.93
1757 1778 8.579863 AGCTATTTGAATAGTTCTTTGCAAACT 58.420 29.630 8.05 7.67 40.37 2.66
1758 1779 9.196552 GCTATTTGAATAGTTCTTTGCAAACTT 57.803 29.630 8.05 0.00 40.37 2.66
1792 1813 7.579589 TTGTTTTCAACTTATGCATGTATGC 57.420 32.000 10.16 9.82 43.36 3.14
1793 1814 7.377398 TTGTTTTCAACTTATGCATGTATGCT 58.623 30.769 16.85 6.29 43.41 3.79
1794 1815 8.518702 TTGTTTTCAACTTATGCATGTATGCTA 58.481 29.630 16.85 5.19 43.41 3.49
1832 1853 9.823647 TTATGTTTTCTTTTGGTTGCTTAATCA 57.176 25.926 0.00 0.00 0.00 2.57
1833 1854 7.769272 TGTTTTCTTTTGGTTGCTTAATCAG 57.231 32.000 0.00 0.00 0.00 2.90
1848 1869 6.360844 CTTAATCAGCATTCTGGAAGTCAG 57.639 41.667 0.00 0.00 44.68 3.51
1849 1870 2.105006 TCAGCATTCTGGAAGTCAGC 57.895 50.000 0.00 0.00 43.06 4.26
1850 1871 1.627329 TCAGCATTCTGGAAGTCAGCT 59.373 47.619 0.00 0.00 43.06 4.24
1851 1872 1.738350 CAGCATTCTGGAAGTCAGCTG 59.262 52.381 7.63 7.63 42.55 4.24
1852 1873 0.450983 GCATTCTGGAAGTCAGCTGC 59.549 55.000 9.47 4.26 43.06 5.25
1853 1874 1.949547 GCATTCTGGAAGTCAGCTGCT 60.950 52.381 9.47 6.85 42.90 4.24
1854 1875 2.434428 CATTCTGGAAGTCAGCTGCTT 58.566 47.619 19.11 19.11 43.06 3.91
1855 1876 2.175878 TTCTGGAAGTCAGCTGCTTC 57.824 50.000 28.27 28.27 43.06 3.86
1856 1877 0.037882 TCTGGAAGTCAGCTGCTTCG 60.038 55.000 28.58 21.30 42.23 3.79
1857 1878 1.633852 CTGGAAGTCAGCTGCTTCGC 61.634 60.000 28.58 23.93 42.23 4.70
1858 1879 2.394563 GGAAGTCAGCTGCTTCGCC 61.395 63.158 28.58 20.07 42.23 5.54
1859 1880 2.734673 GAAGTCAGCTGCTTCGCCG 61.735 63.158 24.92 0.00 33.95 6.46
1860 1881 4.749310 AGTCAGCTGCTTCGCCGG 62.749 66.667 9.47 0.00 0.00 6.13
1861 1882 4.742201 GTCAGCTGCTTCGCCGGA 62.742 66.667 9.47 0.00 0.00 5.14
1862 1883 4.002506 TCAGCTGCTTCGCCGGAA 62.003 61.111 9.47 0.00 0.00 4.30
1863 1884 3.793144 CAGCTGCTTCGCCGGAAC 61.793 66.667 5.05 0.00 0.00 3.62
1864 1885 4.008933 AGCTGCTTCGCCGGAACT 62.009 61.111 5.05 0.00 0.00 3.01
1865 1886 3.491652 GCTGCTTCGCCGGAACTC 61.492 66.667 5.05 0.00 0.00 3.01
1866 1887 3.181967 CTGCTTCGCCGGAACTCG 61.182 66.667 5.05 0.00 38.88 4.18
1867 1888 3.626680 CTGCTTCGCCGGAACTCGA 62.627 63.158 5.05 0.32 42.43 4.04
1868 1889 2.431942 GCTTCGCCGGAACTCGAA 60.432 61.111 5.05 10.31 41.65 3.71
1870 1891 2.431942 TTCGCCGGAACTCGAAGC 60.432 61.111 5.05 0.00 39.43 3.86
1871 1892 4.771356 TCGCCGGAACTCGAAGCG 62.771 66.667 5.05 0.00 45.85 4.68
1873 1894 3.179939 GCCGGAACTCGAAGCGTC 61.180 66.667 5.05 0.00 42.43 5.19
1874 1895 2.506438 CCGGAACTCGAAGCGTCC 60.506 66.667 0.00 0.00 42.43 4.79
1875 1896 2.567049 CGGAACTCGAAGCGTCCT 59.433 61.111 0.00 0.00 42.43 3.85
1876 1897 1.801913 CGGAACTCGAAGCGTCCTG 60.802 63.158 0.00 0.00 42.43 3.86
1877 1898 2.095252 GGAACTCGAAGCGTCCTGC 61.095 63.158 0.00 0.00 46.98 4.85
1886 1907 2.202878 GCGTCCTGCTAATCGCCA 60.203 61.111 0.00 0.00 42.33 5.69
1887 1908 2.240500 GCGTCCTGCTAATCGCCAG 61.241 63.158 0.00 0.00 42.33 4.85
1888 1909 2.240500 CGTCCTGCTAATCGCCAGC 61.241 63.158 0.00 0.00 39.56 4.85
1889 1910 1.889573 GTCCTGCTAATCGCCAGCC 60.890 63.158 0.00 0.00 38.29 4.85
1890 1911 2.190313 CCTGCTAATCGCCAGCCA 59.810 61.111 0.00 0.00 38.29 4.75
1891 1912 2.182842 CCTGCTAATCGCCAGCCAC 61.183 63.158 0.00 0.00 38.29 5.01
1892 1913 2.511373 TGCTAATCGCCAGCCACG 60.511 61.111 0.00 0.00 38.29 4.94
1893 1914 2.202878 GCTAATCGCCAGCCACGA 60.203 61.111 0.00 0.00 44.75 4.35
1894 1915 2.526120 GCTAATCGCCAGCCACGAC 61.526 63.158 0.00 0.00 43.23 4.34
1895 1916 1.883084 CTAATCGCCAGCCACGACC 60.883 63.158 0.00 0.00 43.23 4.79
1896 1917 2.298158 CTAATCGCCAGCCACGACCT 62.298 60.000 0.00 0.00 43.23 3.85
1897 1918 2.572095 TAATCGCCAGCCACGACCTG 62.572 60.000 0.00 0.00 43.23 4.00
1905 1926 4.363990 CCACGACCTGCGCAGAGT 62.364 66.667 38.06 30.84 46.04 3.24
1906 1927 3.108289 CACGACCTGCGCAGAGTG 61.108 66.667 38.06 33.47 46.04 3.51
1907 1928 3.606662 ACGACCTGCGCAGAGTGT 61.607 61.111 38.06 26.64 46.04 3.55
1908 1929 2.356313 CGACCTGCGCAGAGTGTT 60.356 61.111 38.06 16.27 0.00 3.32
1909 1930 2.661566 CGACCTGCGCAGAGTGTTG 61.662 63.158 38.06 25.26 0.00 3.33
1910 1931 1.300931 GACCTGCGCAGAGTGTTGA 60.301 57.895 38.06 0.00 0.00 3.18
1911 1932 1.287730 GACCTGCGCAGAGTGTTGAG 61.288 60.000 38.06 20.51 0.00 3.02
1912 1933 2.675056 CCTGCGCAGAGTGTTGAGC 61.675 63.158 38.06 0.00 43.11 4.26
1914 1935 1.957695 TGCGCAGAGTGTTGAGCAG 60.958 57.895 5.66 0.00 46.53 4.24
1915 1936 2.675056 GCGCAGAGTGTTGAGCAGG 61.675 63.158 0.30 0.00 42.47 4.85
1916 1937 2.031516 CGCAGAGTGTTGAGCAGGG 61.032 63.158 0.00 0.00 0.00 4.45
1917 1938 1.372683 GCAGAGTGTTGAGCAGGGA 59.627 57.895 0.00 0.00 0.00 4.20
1918 1939 0.673022 GCAGAGTGTTGAGCAGGGAG 60.673 60.000 0.00 0.00 0.00 4.30
1919 1940 0.972134 CAGAGTGTTGAGCAGGGAGA 59.028 55.000 0.00 0.00 0.00 3.71
1920 1941 1.067000 CAGAGTGTTGAGCAGGGAGAG 60.067 57.143 0.00 0.00 0.00 3.20
1921 1942 0.248843 GAGTGTTGAGCAGGGAGAGG 59.751 60.000 0.00 0.00 0.00 3.69
1922 1943 0.178921 AGTGTTGAGCAGGGAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
1923 1944 0.908198 GTGTTGAGCAGGGAGAGGAT 59.092 55.000 0.00 0.00 0.00 3.24
1924 1945 0.907486 TGTTGAGCAGGGAGAGGATG 59.093 55.000 0.00 0.00 0.00 3.51
1925 1946 0.908198 GTTGAGCAGGGAGAGGATGT 59.092 55.000 0.00 0.00 0.00 3.06
1926 1947 1.280421 GTTGAGCAGGGAGAGGATGTT 59.720 52.381 0.00 0.00 0.00 2.71
1927 1948 0.907486 TGAGCAGGGAGAGGATGTTG 59.093 55.000 0.00 0.00 0.00 3.33
1928 1949 1.198713 GAGCAGGGAGAGGATGTTGA 58.801 55.000 0.00 0.00 0.00 3.18
1929 1950 1.138661 GAGCAGGGAGAGGATGTTGAG 59.861 57.143 0.00 0.00 0.00 3.02
1930 1951 0.179936 GCAGGGAGAGGATGTTGAGG 59.820 60.000 0.00 0.00 0.00 3.86
1931 1952 1.577736 CAGGGAGAGGATGTTGAGGT 58.422 55.000 0.00 0.00 0.00 3.85
1932 1953 2.752030 CAGGGAGAGGATGTTGAGGTA 58.248 52.381 0.00 0.00 0.00 3.08
1933 1954 3.107601 CAGGGAGAGGATGTTGAGGTAA 58.892 50.000 0.00 0.00 0.00 2.85
1934 1955 3.133721 CAGGGAGAGGATGTTGAGGTAAG 59.866 52.174 0.00 0.00 0.00 2.34
1935 1956 3.108376 GGGAGAGGATGTTGAGGTAAGT 58.892 50.000 0.00 0.00 0.00 2.24
1936 1957 3.118592 GGGAGAGGATGTTGAGGTAAGTG 60.119 52.174 0.00 0.00 0.00 3.16
1937 1958 3.118592 GGAGAGGATGTTGAGGTAAGTGG 60.119 52.174 0.00 0.00 0.00 4.00
1938 1959 2.237392 AGAGGATGTTGAGGTAAGTGGC 59.763 50.000 0.00 0.00 0.00 5.01
1939 1960 1.985159 AGGATGTTGAGGTAAGTGGCA 59.015 47.619 0.00 0.00 0.00 4.92
1940 1961 2.578021 AGGATGTTGAGGTAAGTGGCAT 59.422 45.455 0.00 0.00 0.00 4.40
1941 1962 2.684881 GGATGTTGAGGTAAGTGGCATG 59.315 50.000 0.00 0.00 0.00 4.06
1942 1963 1.533625 TGTTGAGGTAAGTGGCATGC 58.466 50.000 9.90 9.90 0.00 4.06
1943 1964 1.073763 TGTTGAGGTAAGTGGCATGCT 59.926 47.619 18.92 0.00 0.00 3.79
1944 1965 1.470098 GTTGAGGTAAGTGGCATGCTG 59.530 52.381 18.92 0.00 0.00 4.41
1945 1966 0.983467 TGAGGTAAGTGGCATGCTGA 59.017 50.000 18.92 1.21 0.00 4.26
1946 1967 1.561076 TGAGGTAAGTGGCATGCTGAT 59.439 47.619 18.92 4.41 0.00 2.90
1947 1968 1.945394 GAGGTAAGTGGCATGCTGATG 59.055 52.381 18.92 0.00 0.00 3.07
1948 1969 1.561076 AGGTAAGTGGCATGCTGATGA 59.439 47.619 18.92 0.00 0.00 2.92
1949 1970 1.672881 GGTAAGTGGCATGCTGATGAC 59.327 52.381 18.92 10.46 38.23 3.06
1950 1971 2.358957 GTAAGTGGCATGCTGATGACA 58.641 47.619 18.92 2.42 46.07 3.58
1953 1974 3.342982 TGGCATGCTGATGACACAA 57.657 47.368 18.92 0.00 43.17 3.33
1954 1975 1.170442 TGGCATGCTGATGACACAAG 58.830 50.000 18.92 0.00 43.17 3.16
1955 1976 1.171308 GGCATGCTGATGACACAAGT 58.829 50.000 18.92 0.00 37.57 3.16
1956 1977 1.131883 GGCATGCTGATGACACAAGTC 59.868 52.381 18.92 0.00 45.19 3.01
1957 1978 1.131883 GCATGCTGATGACACAAGTCC 59.868 52.381 11.37 0.00 44.33 3.85
1958 1979 2.429478 CATGCTGATGACACAAGTCCA 58.571 47.619 0.00 0.00 44.33 4.02
1959 1980 2.865119 TGCTGATGACACAAGTCCAT 57.135 45.000 0.00 0.00 44.33 3.41
1960 1981 3.144657 TGCTGATGACACAAGTCCATT 57.855 42.857 0.00 0.00 44.33 3.16
1961 1982 3.489355 TGCTGATGACACAAGTCCATTT 58.511 40.909 0.00 0.00 44.33 2.32
2017 2481 9.855021 ATTTAAATACAGTTGACATTAGTTGGC 57.145 29.630 0.00 0.00 0.00 4.52
2018 2482 6.892658 AAATACAGTTGACATTAGTTGGCA 57.107 33.333 0.00 0.00 43.47 4.92
2019 2483 7.466746 AAATACAGTTGACATTAGTTGGCAT 57.533 32.000 0.00 0.00 44.92 4.40
2020 2484 7.466746 AATACAGTTGACATTAGTTGGCATT 57.533 32.000 0.00 0.00 44.92 3.56
2021 2485 8.574251 AATACAGTTGACATTAGTTGGCATTA 57.426 30.769 0.00 0.00 44.92 1.90
2022 2486 6.500684 ACAGTTGACATTAGTTGGCATTAG 57.499 37.500 0.00 0.00 44.92 1.73
2023 2487 6.003950 ACAGTTGACATTAGTTGGCATTAGT 58.996 36.000 0.00 0.00 44.92 2.24
2024 2488 6.490040 ACAGTTGACATTAGTTGGCATTAGTT 59.510 34.615 0.00 0.00 44.92 2.24
2025 2489 6.803320 CAGTTGACATTAGTTGGCATTAGTTG 59.197 38.462 0.00 0.00 44.92 3.16
2026 2490 5.895636 TGACATTAGTTGGCATTAGTTGG 57.104 39.130 0.00 0.00 38.92 3.77
2027 2491 5.336372 TTGACATTAGTTGGCATTAGTTGGC 60.336 40.000 0.00 0.00 44.92 4.52
2038 2502 5.567138 GCATTAGTTGGCATCTTGTAGTT 57.433 39.130 2.98 0.00 0.00 2.24
2039 2503 5.573146 GCATTAGTTGGCATCTTGTAGTTC 58.427 41.667 2.98 0.00 0.00 3.01
2040 2504 5.123820 GCATTAGTTGGCATCTTGTAGTTCA 59.876 40.000 2.98 0.00 0.00 3.18
2041 2505 6.546395 CATTAGTTGGCATCTTGTAGTTCAC 58.454 40.000 2.98 0.00 0.00 3.18
2042 2506 4.357918 AGTTGGCATCTTGTAGTTCACT 57.642 40.909 0.00 0.00 0.00 3.41
2043 2507 5.483685 AGTTGGCATCTTGTAGTTCACTA 57.516 39.130 0.00 0.00 0.00 2.74
2044 2508 5.482908 AGTTGGCATCTTGTAGTTCACTAG 58.517 41.667 0.00 0.00 0.00 2.57
2045 2509 5.012148 AGTTGGCATCTTGTAGTTCACTAGT 59.988 40.000 0.00 0.00 32.51 2.57
2046 2510 5.483685 TGGCATCTTGTAGTTCACTAGTT 57.516 39.130 0.00 0.00 32.51 2.24
2047 2511 5.237815 TGGCATCTTGTAGTTCACTAGTTG 58.762 41.667 0.00 0.00 34.65 3.16
2048 2512 4.631813 GGCATCTTGTAGTTCACTAGTTGG 59.368 45.833 0.00 0.00 33.15 3.77
2049 2513 4.093556 GCATCTTGTAGTTCACTAGTTGGC 59.906 45.833 0.00 0.00 33.15 4.52
2050 2514 4.948341 TCTTGTAGTTCACTAGTTGGCA 57.052 40.909 0.00 0.00 32.51 4.92
2051 2515 5.483685 TCTTGTAGTTCACTAGTTGGCAT 57.516 39.130 0.00 0.00 32.51 4.40
2052 2516 5.479306 TCTTGTAGTTCACTAGTTGGCATC 58.521 41.667 0.00 0.00 32.51 3.91
2053 2517 5.246203 TCTTGTAGTTCACTAGTTGGCATCT 59.754 40.000 3.23 3.23 32.51 2.90
2054 2518 5.483685 TGTAGTTCACTAGTTGGCATCTT 57.516 39.130 2.98 0.00 0.00 2.40
2055 2519 5.865085 TGTAGTTCACTAGTTGGCATCTTT 58.135 37.500 2.98 0.00 0.00 2.52
2056 2520 6.296026 TGTAGTTCACTAGTTGGCATCTTTT 58.704 36.000 2.98 0.00 0.00 2.27
2057 2521 5.948992 AGTTCACTAGTTGGCATCTTTTC 57.051 39.130 2.98 0.00 0.00 2.29
2058 2522 5.376625 AGTTCACTAGTTGGCATCTTTTCA 58.623 37.500 2.98 0.00 0.00 2.69
2059 2523 6.006449 AGTTCACTAGTTGGCATCTTTTCAT 58.994 36.000 2.98 0.00 0.00 2.57
2060 2524 7.168219 AGTTCACTAGTTGGCATCTTTTCATA 58.832 34.615 2.98 0.00 0.00 2.15
2061 2525 7.335422 AGTTCACTAGTTGGCATCTTTTCATAG 59.665 37.037 2.98 0.00 0.00 2.23
2062 2526 6.711277 TCACTAGTTGGCATCTTTTCATAGT 58.289 36.000 2.98 0.00 0.00 2.12
2063 2527 7.168219 TCACTAGTTGGCATCTTTTCATAGTT 58.832 34.615 2.98 0.00 0.00 2.24
2064 2528 7.119699 TCACTAGTTGGCATCTTTTCATAGTTG 59.880 37.037 2.98 0.00 0.00 3.16
2065 2529 7.119699 CACTAGTTGGCATCTTTTCATAGTTGA 59.880 37.037 2.98 0.00 0.00 3.18
2066 2530 6.259550 AGTTGGCATCTTTTCATAGTTGAC 57.740 37.500 0.00 0.00 0.00 3.18
2067 2531 5.769662 AGTTGGCATCTTTTCATAGTTGACA 59.230 36.000 0.00 0.00 32.41 3.58
2068 2532 6.435277 AGTTGGCATCTTTTCATAGTTGACAT 59.565 34.615 0.00 0.00 33.92 3.06
2069 2533 6.441093 TGGCATCTTTTCATAGTTGACATC 57.559 37.500 0.00 0.00 29.95 3.06
2070 2534 5.945191 TGGCATCTTTTCATAGTTGACATCA 59.055 36.000 0.00 0.00 29.95 3.07
2071 2535 6.094464 TGGCATCTTTTCATAGTTGACATCAG 59.906 38.462 0.00 0.00 29.95 2.90
2072 2536 6.094603 GGCATCTTTTCATAGTTGACATCAGT 59.905 38.462 0.00 0.00 0.00 3.41
2073 2537 6.965500 GCATCTTTTCATAGTTGACATCAGTG 59.035 38.462 0.00 0.00 0.00 3.66
2074 2538 7.470079 CATCTTTTCATAGTTGACATCAGTGG 58.530 38.462 0.00 0.00 0.00 4.00
2075 2539 6.533730 TCTTTTCATAGTTGACATCAGTGGT 58.466 36.000 0.00 0.00 0.00 4.16
2076 2540 6.650807 TCTTTTCATAGTTGACATCAGTGGTC 59.349 38.462 0.00 0.00 35.83 4.02
2077 2541 5.482163 TTCATAGTTGACATCAGTGGTCA 57.518 39.130 0.00 0.00 43.12 4.02
2078 2542 4.820897 TCATAGTTGACATCAGTGGTCAC 58.179 43.478 2.11 0.00 44.38 3.67
2079 2543 4.528206 TCATAGTTGACATCAGTGGTCACT 59.472 41.667 2.11 0.00 44.38 3.41
2080 2544 3.845781 AGTTGACATCAGTGGTCACTT 57.154 42.857 0.20 0.00 44.38 3.16
2081 2545 4.156455 AGTTGACATCAGTGGTCACTTT 57.844 40.909 0.20 0.00 44.38 2.66
2082 2546 4.526970 AGTTGACATCAGTGGTCACTTTT 58.473 39.130 0.20 0.00 44.38 2.27
2083 2547 4.949856 AGTTGACATCAGTGGTCACTTTTT 59.050 37.500 0.20 0.00 44.38 1.94
2118 2582 4.928398 CTGGAGAAGCTGTCGCAT 57.072 55.556 0.00 0.00 39.10 4.73
2119 2583 2.675519 CTGGAGAAGCTGTCGCATC 58.324 57.895 0.00 0.00 39.10 3.91
2120 2584 0.175302 CTGGAGAAGCTGTCGCATCT 59.825 55.000 0.00 0.00 45.99 2.90
2123 2587 1.519719 AGAAGCTGTCGCATCTCCC 59.480 57.895 0.00 0.00 39.85 4.30
2124 2588 1.880340 GAAGCTGTCGCATCTCCCG 60.880 63.158 0.00 0.00 39.10 5.14
2125 2589 4.521062 AGCTGTCGCATCTCCCGC 62.521 66.667 0.00 0.00 39.10 6.13
2258 3170 7.112122 TCTTATTGTTGCACATCCACTAGAAT 58.888 34.615 0.00 0.00 0.00 2.40
2331 3243 2.549754 GCACATTCAGTTGCACACTAGT 59.450 45.455 0.00 0.00 32.76 2.57
2378 3291 9.573133 GAGCTTTATTAGTTGCACAAATACATT 57.427 29.630 0.00 0.00 0.00 2.71
2604 3518 0.179045 GATAAGGGCATCACCAGCGT 60.179 55.000 0.00 0.00 42.05 5.07
2724 3638 2.168496 CGGACCTCACTAAGTTCCTGA 58.832 52.381 0.00 0.00 0.00 3.86
2906 3820 5.869344 GGCTTTCAACATAACTGGAAATTCC 59.131 40.000 4.79 4.79 36.96 3.01
3130 4044 4.819630 AGAACACATTAACGAAGCTTTCCA 59.180 37.500 0.00 0.00 0.00 3.53
3183 4097 3.937079 CTGCTGCTTGTATCACTTGATGA 59.063 43.478 0.00 0.00 43.13 2.92
3295 4212 4.100344 GGCCTTTTCTTTTGTTTGGGTCTA 59.900 41.667 0.00 0.00 0.00 2.59
3663 4584 6.863126 GCACAGTTTTACTAATCTTGTTGCAT 59.137 34.615 0.00 0.00 0.00 3.96
3962 4887 2.358898 GCATTCGTGGCATCCAAGTTAT 59.641 45.455 0.00 0.00 34.18 1.89
4089 5015 6.854496 ACTTTTGTAGTTGCGAGAATACAA 57.146 33.333 7.20 7.20 36.59 2.41
4148 5074 9.173021 ACATATAAGCTTTTGTAGTTGCACATA 57.827 29.630 3.20 0.00 0.00 2.29
4159 5085 7.144722 TGTAGTTGCACATATTCTTTTGGAG 57.855 36.000 0.00 0.00 0.00 3.86
4160 5086 6.714810 TGTAGTTGCACATATTCTTTTGGAGT 59.285 34.615 0.00 0.00 0.00 3.85
4531 5460 1.067425 GCAGCCATCAATGCAAACTGA 60.067 47.619 0.00 0.00 42.11 3.41
4564 5493 3.312421 CGTGCTCCAAAAAGAAAGAGACA 59.688 43.478 0.00 0.00 0.00 3.41
4721 5654 5.258841 AGGATGACAATGAAGAAGATGCAA 58.741 37.500 0.00 0.00 0.00 4.08
4928 5891 2.762234 GCAGCAGCTGATGGCAGTC 61.762 63.158 31.37 12.15 44.17 3.51
4957 5920 5.748152 GGAAGAAGACGATGATGAAGAAGAG 59.252 44.000 0.00 0.00 0.00 2.85
5137 6100 2.231478 GAGTAGCAGGAGCACACTACAA 59.769 50.000 9.62 0.00 45.49 2.41
5217 6180 0.322975 GAAGCAGAGTCTCAGGGCAA 59.677 55.000 1.94 0.00 0.00 4.52
5257 6220 2.294233 CTGCAACTTGAAGCCAGCTTTA 59.706 45.455 6.31 0.00 36.26 1.85
5331 6294 4.998671 TCAACTTTGCCATTGACAAGAA 57.001 36.364 0.00 0.00 29.89 2.52
5422 6385 8.206126 ACTGGGTTCATTCAAAGGAAAAATAT 57.794 30.769 0.00 0.00 36.43 1.28
5473 6436 1.002379 CTCCAGCAAGAGCAAGGCT 60.002 57.895 0.00 0.00 45.49 4.58
5629 6592 5.801947 GCTTCAAACTAATATGCCAACTGTG 59.198 40.000 0.00 0.00 0.00 3.66
5630 6593 6.349280 GCTTCAAACTAATATGCCAACTGTGA 60.349 38.462 0.00 0.00 0.00 3.58
5790 6753 1.712056 TTGGGGTTCAGAGACGAGAA 58.288 50.000 0.00 0.00 0.00 2.87
5883 6846 5.435686 AAGATGCCAACTACAGATACCAA 57.564 39.130 0.00 0.00 0.00 3.67
6140 7103 3.071479 CCGCCAACTACAACACTATTGT 58.929 45.455 0.00 0.00 37.67 2.71
6175 7138 2.192664 ATGATGCACCCGTGTTTGTA 57.807 45.000 0.00 0.00 0.00 2.41
6285 7249 1.001746 CGGCATAGATGGTGATGCTCT 59.998 52.381 6.79 0.00 46.27 4.09
6429 7393 6.174720 TCAAGAACTAGATGTTGGTTCACT 57.825 37.500 9.56 0.00 46.44 3.41
6544 7508 1.746615 GCCCGCAGCATCTCAAAGA 60.747 57.895 0.00 0.00 42.97 2.52
6612 7576 4.202182 TGAGGTAGTGAACAAGCTTTACGT 60.202 41.667 0.00 0.00 0.00 3.57
6633 7597 1.707989 TGCCCTCTTGTATTGGGTCAA 59.292 47.619 0.00 0.00 42.77 3.18
6780 7744 2.597455 ACAGGGCTTTTAGTTGCACAT 58.403 42.857 0.00 0.00 34.58 3.21
6804 7768 7.789273 TTGTTCTGTTTTCATTTTCATGCAT 57.211 28.000 0.00 0.00 0.00 3.96
6960 7930 6.509358 CGGTTCAATGGTTGTCAAAAATTGTC 60.509 38.462 15.79 11.95 31.63 3.18
7073 8043 7.299134 TCCAAAACCTTCTTTTTACCCTCATA 58.701 34.615 0.00 0.00 0.00 2.15
7080 8050 9.154632 ACCTTCTTTTTACCCTCATATTTGTTT 57.845 29.630 0.00 0.00 0.00 2.83
7088 8058 8.588290 TTACCCTCATATTTGTTTTGTAGCAT 57.412 30.769 0.00 0.00 0.00 3.79
7092 8062 8.872845 CCCTCATATTTGTTTTGTAGCATTTTC 58.127 33.333 0.00 0.00 0.00 2.29
7207 8177 8.175925 TCCACAATGTGAATGAGATAAACAAA 57.824 30.769 15.91 0.00 35.23 2.83
7237 8207 1.849097 ACAAGAACCGTCTCGACAAC 58.151 50.000 0.00 0.00 30.70 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
511 517 6.105333 TGCTAAAATTGCACAAACAAGAGTT 58.895 32.000 0.00 0.00 36.00 3.01
591 597 6.072948 CGAGAATAACACATAAACCACCACAA 60.073 38.462 0.00 0.00 0.00 3.33
637 644 7.517614 TGGTACTAATTTGCACAAATCAAGA 57.482 32.000 18.16 2.70 39.88 3.02
705 712 7.118496 ACAACCATATCCACAACAAAAAGAA 57.882 32.000 0.00 0.00 0.00 2.52
917 927 4.220693 ACTACAATGATGCAGCCAACTA 57.779 40.909 0.00 0.00 0.00 2.24
989 1001 9.408648 CTCCTATTATAACCATTTTTGTCCTGT 57.591 33.333 0.00 0.00 0.00 4.00
1144 1160 0.326264 AAGCGGCTGACTTCCAGAAT 59.674 50.000 1.81 0.00 45.78 2.40
1167 1183 1.289066 CAGGACGCTTCGAGTTCCA 59.711 57.895 6.49 0.00 0.00 3.53
1339 1358 3.389329 ACGGAACTGATCAGCATCCTAAT 59.611 43.478 30.61 19.99 36.27 1.73
1383 1402 1.109323 GCTCCCTTGCCAAGTGTTGT 61.109 55.000 3.37 0.00 0.00 3.32
1488 1509 9.185680 ACAGACTAAAAACAAAAATAGTGGTCT 57.814 29.630 0.00 0.00 0.00 3.85
1529 1550 9.408648 TCAATATGACTAGAGATGTCAACTACA 57.591 33.333 0.00 0.00 45.82 2.74
1555 1576 9.855021 GCCAACTAATGTCAACTGTATTTAAAT 57.145 29.630 5.89 5.89 0.00 1.40
1556 1577 8.851145 TGCCAACTAATGTCAACTGTATTTAAA 58.149 29.630 0.00 0.00 0.00 1.52
1557 1578 8.397575 TGCCAACTAATGTCAACTGTATTTAA 57.602 30.769 0.00 0.00 0.00 1.52
1558 1579 7.987750 TGCCAACTAATGTCAACTGTATTTA 57.012 32.000 0.00 0.00 0.00 1.40
1559 1580 6.892658 TGCCAACTAATGTCAACTGTATTT 57.107 33.333 0.00 0.00 0.00 1.40
1560 1581 7.466746 AATGCCAACTAATGTCAACTGTATT 57.533 32.000 0.00 0.00 0.00 1.89
1561 1582 7.829211 ACTAATGCCAACTAATGTCAACTGTAT 59.171 33.333 0.00 0.00 0.00 2.29
1562 1583 7.165485 ACTAATGCCAACTAATGTCAACTGTA 58.835 34.615 0.00 0.00 0.00 2.74
1563 1584 6.003950 ACTAATGCCAACTAATGTCAACTGT 58.996 36.000 0.00 0.00 0.00 3.55
1564 1585 6.500684 ACTAATGCCAACTAATGTCAACTG 57.499 37.500 0.00 0.00 0.00 3.16
1565 1586 6.071952 CCAACTAATGCCAACTAATGTCAACT 60.072 38.462 0.00 0.00 0.00 3.16
1566 1587 6.092748 CCAACTAATGCCAACTAATGTCAAC 58.907 40.000 0.00 0.00 0.00 3.18
1567 1588 5.336372 GCCAACTAATGCCAACTAATGTCAA 60.336 40.000 0.00 0.00 0.00 3.18
1568 1589 4.157656 GCCAACTAATGCCAACTAATGTCA 59.842 41.667 0.00 0.00 0.00 3.58
1569 1590 4.157656 TGCCAACTAATGCCAACTAATGTC 59.842 41.667 0.00 0.00 0.00 3.06
1570 1591 4.085733 TGCCAACTAATGCCAACTAATGT 58.914 39.130 0.00 0.00 0.00 2.71
1571 1592 4.717233 TGCCAACTAATGCCAACTAATG 57.283 40.909 0.00 0.00 0.00 1.90
1572 1593 5.203528 AGATGCCAACTAATGCCAACTAAT 58.796 37.500 0.00 0.00 0.00 1.73
1573 1594 4.599041 AGATGCCAACTAATGCCAACTAA 58.401 39.130 0.00 0.00 0.00 2.24
1574 1595 4.235079 AGATGCCAACTAATGCCAACTA 57.765 40.909 0.00 0.00 0.00 2.24
1575 1596 3.091633 AGATGCCAACTAATGCCAACT 57.908 42.857 0.00 0.00 0.00 3.16
1576 1597 3.056607 ACAAGATGCCAACTAATGCCAAC 60.057 43.478 0.00 0.00 0.00 3.77
1577 1598 3.164268 ACAAGATGCCAACTAATGCCAA 58.836 40.909 0.00 0.00 0.00 4.52
1578 1599 2.806434 ACAAGATGCCAACTAATGCCA 58.194 42.857 0.00 0.00 0.00 4.92
1579 1600 3.947834 ACTACAAGATGCCAACTAATGCC 59.052 43.478 0.00 0.00 0.00 4.40
1580 1601 5.123820 TGAACTACAAGATGCCAACTAATGC 59.876 40.000 0.00 0.00 0.00 3.56
1581 1602 6.372659 AGTGAACTACAAGATGCCAACTAATG 59.627 38.462 0.00 0.00 0.00 1.90
1582 1603 6.476378 AGTGAACTACAAGATGCCAACTAAT 58.524 36.000 0.00 0.00 0.00 1.73
1583 1604 5.865085 AGTGAACTACAAGATGCCAACTAA 58.135 37.500 0.00 0.00 0.00 2.24
1584 1605 5.483685 AGTGAACTACAAGATGCCAACTA 57.516 39.130 0.00 0.00 0.00 2.24
1585 1606 4.357918 AGTGAACTACAAGATGCCAACT 57.642 40.909 0.00 0.00 0.00 3.16
1586 1607 5.238583 ACTAGTGAACTACAAGATGCCAAC 58.761 41.667 0.00 0.00 0.00 3.77
1587 1608 5.483685 ACTAGTGAACTACAAGATGCCAA 57.516 39.130 0.00 0.00 0.00 4.52
1588 1609 5.237815 CAACTAGTGAACTACAAGATGCCA 58.762 41.667 0.00 0.00 0.00 4.92
1589 1610 4.631813 CCAACTAGTGAACTACAAGATGCC 59.368 45.833 0.00 0.00 0.00 4.40
1590 1611 4.093556 GCCAACTAGTGAACTACAAGATGC 59.906 45.833 0.00 0.00 0.00 3.91
1591 1612 5.237815 TGCCAACTAGTGAACTACAAGATG 58.762 41.667 0.00 0.00 0.00 2.90
1592 1613 5.483685 TGCCAACTAGTGAACTACAAGAT 57.516 39.130 0.00 0.00 0.00 2.40
1593 1614 4.948341 TGCCAACTAGTGAACTACAAGA 57.052 40.909 0.00 0.00 0.00 3.02
1594 1615 5.482908 AGATGCCAACTAGTGAACTACAAG 58.517 41.667 0.00 0.00 0.00 3.16
1595 1616 5.483685 AGATGCCAACTAGTGAACTACAA 57.516 39.130 0.00 0.00 0.00 2.41
1596 1617 5.483685 AAGATGCCAACTAGTGAACTACA 57.516 39.130 0.00 0.00 0.00 2.74
1597 1618 6.426937 TGAAAAGATGCCAACTAGTGAACTAC 59.573 38.462 0.00 0.00 0.00 2.73
1598 1619 6.530120 TGAAAAGATGCCAACTAGTGAACTA 58.470 36.000 0.00 0.00 0.00 2.24
1599 1620 5.376625 TGAAAAGATGCCAACTAGTGAACT 58.623 37.500 0.00 0.00 0.00 3.01
1600 1621 5.689383 TGAAAAGATGCCAACTAGTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
1601 1622 7.168219 ACTATGAAAAGATGCCAACTAGTGAA 58.832 34.615 0.00 0.00 0.00 3.18
1602 1623 6.711277 ACTATGAAAAGATGCCAACTAGTGA 58.289 36.000 0.00 0.00 0.00 3.41
1603 1624 6.992063 ACTATGAAAAGATGCCAACTAGTG 57.008 37.500 0.00 0.00 0.00 2.74
1604 1625 7.119846 GTCAACTATGAAAAGATGCCAACTAGT 59.880 37.037 0.00 0.00 37.30 2.57
1605 1626 7.119699 TGTCAACTATGAAAAGATGCCAACTAG 59.880 37.037 0.00 0.00 37.30 2.57
1606 1627 6.939730 TGTCAACTATGAAAAGATGCCAACTA 59.060 34.615 0.00 0.00 37.30 2.24
1607 1628 5.769662 TGTCAACTATGAAAAGATGCCAACT 59.230 36.000 0.00 0.00 37.30 3.16
1608 1629 6.012658 TGTCAACTATGAAAAGATGCCAAC 57.987 37.500 0.00 0.00 37.30 3.77
1609 1630 6.433716 TGATGTCAACTATGAAAAGATGCCAA 59.566 34.615 0.00 0.00 37.30 4.52
1610 1631 5.945191 TGATGTCAACTATGAAAAGATGCCA 59.055 36.000 0.00 0.00 37.30 4.92
1611 1632 6.094603 ACTGATGTCAACTATGAAAAGATGCC 59.905 38.462 0.00 0.00 37.30 4.40
1612 1633 6.965500 CACTGATGTCAACTATGAAAAGATGC 59.035 38.462 0.00 0.00 37.30 3.91
1613 1634 7.120285 ACCACTGATGTCAACTATGAAAAGATG 59.880 37.037 0.00 0.00 37.30 2.90
1614 1635 7.170965 ACCACTGATGTCAACTATGAAAAGAT 58.829 34.615 0.00 0.00 37.30 2.40
1615 1636 6.533730 ACCACTGATGTCAACTATGAAAAGA 58.466 36.000 0.00 0.00 37.30 2.52
1616 1637 6.427853 TGACCACTGATGTCAACTATGAAAAG 59.572 38.462 0.00 0.00 39.66 2.27
1617 1638 6.295249 TGACCACTGATGTCAACTATGAAAA 58.705 36.000 0.00 0.00 39.66 2.29
1618 1639 5.863965 TGACCACTGATGTCAACTATGAAA 58.136 37.500 0.00 0.00 39.66 2.69
1619 1640 5.482163 TGACCACTGATGTCAACTATGAA 57.518 39.130 0.00 0.00 39.66 2.57
1620 1641 5.682234 ATGACCACTGATGTCAACTATGA 57.318 39.130 7.78 0.00 45.15 2.15
1621 1642 6.748333 AAATGACCACTGATGTCAACTATG 57.252 37.500 7.78 0.00 45.15 2.23
1622 1643 7.765695 AAAAATGACCACTGATGTCAACTAT 57.234 32.000 7.78 0.00 45.15 2.12
1665 1686 2.675519 GATGCGACAGCTTCTCCAG 58.324 57.895 0.00 0.00 45.42 3.86
1666 1687 4.919653 GATGCGACAGCTTCTCCA 57.080 55.556 0.00 0.00 45.42 3.86
1671 1692 2.103042 GCGGAAGATGCGACAGCTT 61.103 57.895 9.53 9.53 43.01 3.74
1672 1693 2.510238 GCGGAAGATGCGACAGCT 60.510 61.111 0.00 0.00 45.42 4.24
1673 1694 2.806856 CTGCGGAAGATGCGACAGC 61.807 63.158 0.00 0.00 45.41 4.40
1674 1695 2.806856 GCTGCGGAAGATGCGACAG 61.807 63.158 0.00 9.82 37.95 3.51
1675 1696 2.815211 GCTGCGGAAGATGCGACA 60.815 61.111 0.00 0.00 30.86 4.35
1676 1697 2.806856 CTGCTGCGGAAGATGCGAC 61.807 63.158 1.17 0.00 30.86 5.19
1677 1698 2.302199 ATCTGCTGCGGAAGATGCGA 62.302 55.000 15.82 0.00 36.52 5.10
1678 1699 1.886313 ATCTGCTGCGGAAGATGCG 60.886 57.895 15.82 0.00 36.52 4.73
1679 1700 1.647629 CATCTGCTGCGGAAGATGC 59.352 57.895 27.23 1.21 45.45 3.91
1681 1702 4.137879 GCATCTGCTGCGGAAGAT 57.862 55.556 16.13 10.58 41.97 2.40
1691 1712 2.158986 ACTCACATACCTCAGCATCTGC 60.159 50.000 0.00 0.00 42.49 4.26
1692 1713 3.815856 ACTCACATACCTCAGCATCTG 57.184 47.619 0.00 0.00 0.00 2.90
1693 1714 4.833478 AAACTCACATACCTCAGCATCT 57.167 40.909 0.00 0.00 0.00 2.90
1694 1715 5.886960 AAAAACTCACATACCTCAGCATC 57.113 39.130 0.00 0.00 0.00 3.91
1727 1748 9.394767 TGCAAAGAACTATTCAAATAGCTCATA 57.605 29.630 13.05 0.00 41.62 2.15
1728 1749 8.284945 TGCAAAGAACTATTCAAATAGCTCAT 57.715 30.769 13.05 1.99 41.62 2.90
1729 1750 7.686438 TGCAAAGAACTATTCAAATAGCTCA 57.314 32.000 13.05 0.48 41.62 4.26
1730 1751 8.854312 GTTTGCAAAGAACTATTCAAATAGCTC 58.146 33.333 13.26 7.22 41.62 4.09
1731 1752 8.579863 AGTTTGCAAAGAACTATTCAAATAGCT 58.420 29.630 13.26 0.00 41.62 3.32
1732 1753 8.748380 AGTTTGCAAAGAACTATTCAAATAGC 57.252 30.769 13.26 0.00 41.62 2.97
1806 1827 9.823647 TGATTAAGCAACCAAAAGAAAACATAA 57.176 25.926 0.00 0.00 0.00 1.90
1807 1828 9.474920 CTGATTAAGCAACCAAAAGAAAACATA 57.525 29.630 0.00 0.00 0.00 2.29
1808 1829 8.369218 CTGATTAAGCAACCAAAAGAAAACAT 57.631 30.769 0.00 0.00 0.00 2.71
1809 1830 7.769272 CTGATTAAGCAACCAAAAGAAAACA 57.231 32.000 0.00 0.00 0.00 2.83
1825 1846 5.220815 GCTGACTTCCAGAATGCTGATTAAG 60.221 44.000 0.74 5.64 45.78 1.85
1826 1847 4.637534 GCTGACTTCCAGAATGCTGATTAA 59.362 41.667 0.74 0.00 45.78 1.40
1827 1848 4.080695 AGCTGACTTCCAGAATGCTGATTA 60.081 41.667 0.74 0.00 45.78 1.75
1828 1849 3.015327 GCTGACTTCCAGAATGCTGATT 58.985 45.455 0.74 0.00 45.78 2.57
1829 1850 2.239150 AGCTGACTTCCAGAATGCTGAT 59.761 45.455 0.74 0.00 45.78 2.90
1830 1851 1.627329 AGCTGACTTCCAGAATGCTGA 59.373 47.619 0.74 0.00 45.78 4.26
1831 1852 1.738350 CAGCTGACTTCCAGAATGCTG 59.262 52.381 8.42 0.00 45.78 4.41
1832 1853 1.949547 GCAGCTGACTTCCAGAATGCT 60.950 52.381 20.43 0.00 45.67 3.79
1833 1854 0.450983 GCAGCTGACTTCCAGAATGC 59.549 55.000 20.43 0.00 45.78 3.56
1834 1855 2.110901 AGCAGCTGACTTCCAGAATG 57.889 50.000 20.43 0.00 45.78 2.67
1835 1856 2.709213 GAAGCAGCTGACTTCCAGAAT 58.291 47.619 26.98 7.48 45.78 2.40
1836 1857 1.606480 CGAAGCAGCTGACTTCCAGAA 60.606 52.381 29.09 0.00 45.78 3.02
1837 1858 0.037882 CGAAGCAGCTGACTTCCAGA 60.038 55.000 29.09 0.00 45.78 3.86
1838 1859 2.453843 CGAAGCAGCTGACTTCCAG 58.546 57.895 29.09 19.54 45.67 3.86
1839 1860 4.681421 CGAAGCAGCTGACTTCCA 57.319 55.556 29.09 0.00 40.37 3.53
1853 1874 2.431942 GCTTCGAGTTCCGGCGAA 60.432 61.111 9.30 12.95 43.36 4.70
1854 1875 4.771356 CGCTTCGAGTTCCGGCGA 62.771 66.667 9.30 0.00 46.61 5.54
1856 1877 3.179939 GACGCTTCGAGTTCCGGC 61.180 66.667 0.00 0.00 39.14 6.13
1857 1878 2.506438 GGACGCTTCGAGTTCCGG 60.506 66.667 0.00 0.00 39.14 5.14
1858 1879 1.801913 CAGGACGCTTCGAGTTCCG 60.802 63.158 0.00 0.00 40.25 4.30
1859 1880 2.095252 GCAGGACGCTTCGAGTTCC 61.095 63.158 0.00 0.00 37.77 3.62
1860 1881 3.464628 GCAGGACGCTTCGAGTTC 58.535 61.111 0.00 0.00 37.77 3.01
1877 1898 1.883084 GGTCGTGGCTGGCGATTAG 60.883 63.158 0.00 0.00 40.59 1.73
1878 1899 2.185867 GGTCGTGGCTGGCGATTA 59.814 61.111 0.00 0.00 40.59 1.75
1879 1900 3.706373 AGGTCGTGGCTGGCGATT 61.706 61.111 0.00 0.00 40.59 3.34
1880 1901 4.457496 CAGGTCGTGGCTGGCGAT 62.457 66.667 0.00 0.00 40.59 4.58
1888 1909 4.363990 ACTCTGCGCAGGTCGTGG 62.364 66.667 35.36 19.89 41.07 4.94
1889 1910 3.108289 CACTCTGCGCAGGTCGTG 61.108 66.667 35.36 30.78 41.07 4.35
1890 1911 3.151958 AACACTCTGCGCAGGTCGT 62.152 57.895 35.36 25.58 41.07 4.34
1891 1912 2.356313 AACACTCTGCGCAGGTCG 60.356 61.111 35.36 24.96 42.12 4.79
1892 1913 1.287730 CTCAACACTCTGCGCAGGTC 61.288 60.000 35.36 0.00 0.00 3.85
1893 1914 1.301244 CTCAACACTCTGCGCAGGT 60.301 57.895 35.36 27.59 0.00 4.00
1894 1915 2.675056 GCTCAACACTCTGCGCAGG 61.675 63.158 35.36 26.94 0.00 4.85
1895 1916 1.898459 CTGCTCAACACTCTGCGCAG 61.898 60.000 31.53 31.53 45.62 5.18
1896 1917 1.957695 CTGCTCAACACTCTGCGCA 60.958 57.895 10.98 10.98 34.78 6.09
1897 1918 2.675056 CCTGCTCAACACTCTGCGC 61.675 63.158 0.00 0.00 0.00 6.09
1898 1919 2.031516 CCCTGCTCAACACTCTGCG 61.032 63.158 0.00 0.00 0.00 5.18
1899 1920 0.673022 CTCCCTGCTCAACACTCTGC 60.673 60.000 0.00 0.00 0.00 4.26
1900 1921 0.972134 TCTCCCTGCTCAACACTCTG 59.028 55.000 0.00 0.00 0.00 3.35
1901 1922 1.265236 CTCTCCCTGCTCAACACTCT 58.735 55.000 0.00 0.00 0.00 3.24
1902 1923 0.248843 CCTCTCCCTGCTCAACACTC 59.751 60.000 0.00 0.00 0.00 3.51
1903 1924 0.178921 TCCTCTCCCTGCTCAACACT 60.179 55.000 0.00 0.00 0.00 3.55
1904 1925 0.908198 ATCCTCTCCCTGCTCAACAC 59.092 55.000 0.00 0.00 0.00 3.32
1905 1926 0.907486 CATCCTCTCCCTGCTCAACA 59.093 55.000 0.00 0.00 0.00 3.33
1906 1927 0.908198 ACATCCTCTCCCTGCTCAAC 59.092 55.000 0.00 0.00 0.00 3.18
1907 1928 1.280133 CAACATCCTCTCCCTGCTCAA 59.720 52.381 0.00 0.00 0.00 3.02
1908 1929 0.907486 CAACATCCTCTCCCTGCTCA 59.093 55.000 0.00 0.00 0.00 4.26
1909 1930 1.138661 CTCAACATCCTCTCCCTGCTC 59.861 57.143 0.00 0.00 0.00 4.26
1910 1931 1.202330 CTCAACATCCTCTCCCTGCT 58.798 55.000 0.00 0.00 0.00 4.24
1911 1932 0.179936 CCTCAACATCCTCTCCCTGC 59.820 60.000 0.00 0.00 0.00 4.85
1912 1933 1.577736 ACCTCAACATCCTCTCCCTG 58.422 55.000 0.00 0.00 0.00 4.45
1913 1934 3.246167 ACTTACCTCAACATCCTCTCCCT 60.246 47.826 0.00 0.00 0.00 4.20
1914 1935 3.108376 ACTTACCTCAACATCCTCTCCC 58.892 50.000 0.00 0.00 0.00 4.30
1915 1936 3.118592 CCACTTACCTCAACATCCTCTCC 60.119 52.174 0.00 0.00 0.00 3.71
1916 1937 3.680196 GCCACTTACCTCAACATCCTCTC 60.680 52.174 0.00 0.00 0.00 3.20
1917 1938 2.237392 GCCACTTACCTCAACATCCTCT 59.763 50.000 0.00 0.00 0.00 3.69
1918 1939 2.027192 TGCCACTTACCTCAACATCCTC 60.027 50.000 0.00 0.00 0.00 3.71
1919 1940 1.985159 TGCCACTTACCTCAACATCCT 59.015 47.619 0.00 0.00 0.00 3.24
1920 1941 2.489938 TGCCACTTACCTCAACATCC 57.510 50.000 0.00 0.00 0.00 3.51
1921 1942 2.098117 GCATGCCACTTACCTCAACATC 59.902 50.000 6.36 0.00 0.00 3.06
1922 1943 2.094675 GCATGCCACTTACCTCAACAT 58.905 47.619 6.36 0.00 0.00 2.71
1923 1944 1.073763 AGCATGCCACTTACCTCAACA 59.926 47.619 15.66 0.00 0.00 3.33
1924 1945 1.470098 CAGCATGCCACTTACCTCAAC 59.530 52.381 15.66 0.00 0.00 3.18
1925 1946 1.350684 TCAGCATGCCACTTACCTCAA 59.649 47.619 15.66 0.00 34.76 3.02
1926 1947 0.983467 TCAGCATGCCACTTACCTCA 59.017 50.000 15.66 0.00 34.76 3.86
1927 1948 1.945394 CATCAGCATGCCACTTACCTC 59.055 52.381 15.66 0.00 34.76 3.85
1928 1949 1.561076 TCATCAGCATGCCACTTACCT 59.439 47.619 15.66 0.00 34.76 3.08
1929 1950 1.672881 GTCATCAGCATGCCACTTACC 59.327 52.381 15.66 0.00 34.76 2.85
1930 1951 2.096496 GTGTCATCAGCATGCCACTTAC 59.904 50.000 15.66 8.55 34.76 2.34
1931 1952 2.290197 TGTGTCATCAGCATGCCACTTA 60.290 45.455 15.66 0.00 34.76 2.24
1932 1953 1.171308 GTGTCATCAGCATGCCACTT 58.829 50.000 15.66 0.00 34.76 3.16
1933 1954 0.037160 TGTGTCATCAGCATGCCACT 59.963 50.000 15.66 0.00 34.76 4.00
1934 1955 0.883153 TTGTGTCATCAGCATGCCAC 59.117 50.000 15.66 14.38 34.76 5.01
1935 1956 1.170442 CTTGTGTCATCAGCATGCCA 58.830 50.000 15.66 0.78 34.76 4.92
1936 1957 1.131883 GACTTGTGTCATCAGCATGCC 59.868 52.381 15.66 0.00 42.48 4.40
1937 1958 1.131883 GGACTTGTGTCATCAGCATGC 59.868 52.381 10.51 10.51 44.61 4.06
1938 1959 2.429478 TGGACTTGTGTCATCAGCATG 58.571 47.619 0.00 0.00 44.61 4.06
1939 1960 2.865119 TGGACTTGTGTCATCAGCAT 57.135 45.000 0.00 0.00 44.61 3.79
1940 1961 2.865119 ATGGACTTGTGTCATCAGCA 57.135 45.000 0.00 0.00 44.61 4.41
1941 1962 4.510038 AAAATGGACTTGTGTCATCAGC 57.490 40.909 0.00 0.00 44.61 4.26
2000 2464 6.500684 ACTAATGCCAACTAATGTCAACTG 57.499 37.500 0.00 0.00 0.00 3.16
2001 2465 6.071952 CCAACTAATGCCAACTAATGTCAACT 60.072 38.462 0.00 0.00 0.00 3.16
2002 2466 6.092748 CCAACTAATGCCAACTAATGTCAAC 58.907 40.000 0.00 0.00 0.00 3.18
2003 2467 5.336372 GCCAACTAATGCCAACTAATGTCAA 60.336 40.000 0.00 0.00 0.00 3.18
2004 2468 4.157656 GCCAACTAATGCCAACTAATGTCA 59.842 41.667 0.00 0.00 0.00 3.58
2005 2469 4.157656 TGCCAACTAATGCCAACTAATGTC 59.842 41.667 0.00 0.00 0.00 3.06
2006 2470 4.085733 TGCCAACTAATGCCAACTAATGT 58.914 39.130 0.00 0.00 0.00 2.71
2007 2471 4.717233 TGCCAACTAATGCCAACTAATG 57.283 40.909 0.00 0.00 0.00 1.90
2008 2472 5.203528 AGATGCCAACTAATGCCAACTAAT 58.796 37.500 0.00 0.00 0.00 1.73
2009 2473 4.599041 AGATGCCAACTAATGCCAACTAA 58.401 39.130 0.00 0.00 0.00 2.24
2010 2474 4.235079 AGATGCCAACTAATGCCAACTA 57.765 40.909 0.00 0.00 0.00 2.24
2011 2475 3.091633 AGATGCCAACTAATGCCAACT 57.908 42.857 0.00 0.00 0.00 3.16
2012 2476 3.056607 ACAAGATGCCAACTAATGCCAAC 60.057 43.478 0.00 0.00 0.00 3.77
2013 2477 3.164268 ACAAGATGCCAACTAATGCCAA 58.836 40.909 0.00 0.00 0.00 4.52
2014 2478 2.806434 ACAAGATGCCAACTAATGCCA 58.194 42.857 0.00 0.00 0.00 4.92
2015 2479 3.947834 ACTACAAGATGCCAACTAATGCC 59.052 43.478 0.00 0.00 0.00 4.40
2016 2480 5.123820 TGAACTACAAGATGCCAACTAATGC 59.876 40.000 0.00 0.00 0.00 3.56
2017 2481 6.372659 AGTGAACTACAAGATGCCAACTAATG 59.627 38.462 0.00 0.00 0.00 1.90
2018 2482 6.476378 AGTGAACTACAAGATGCCAACTAAT 58.524 36.000 0.00 0.00 0.00 1.73
2019 2483 5.865085 AGTGAACTACAAGATGCCAACTAA 58.135 37.500 0.00 0.00 0.00 2.24
2020 2484 5.483685 AGTGAACTACAAGATGCCAACTA 57.516 39.130 0.00 0.00 0.00 2.24
2021 2485 4.357918 AGTGAACTACAAGATGCCAACT 57.642 40.909 0.00 0.00 0.00 3.16
2022 2486 5.238583 ACTAGTGAACTACAAGATGCCAAC 58.761 41.667 0.00 0.00 0.00 3.77
2023 2487 5.483685 ACTAGTGAACTACAAGATGCCAA 57.516 39.130 0.00 0.00 0.00 4.52
2024 2488 5.237815 CAACTAGTGAACTACAAGATGCCA 58.762 41.667 0.00 0.00 0.00 4.92
2025 2489 4.631813 CCAACTAGTGAACTACAAGATGCC 59.368 45.833 0.00 0.00 0.00 4.40
2026 2490 4.093556 GCCAACTAGTGAACTACAAGATGC 59.906 45.833 0.00 0.00 0.00 3.91
2027 2491 5.237815 TGCCAACTAGTGAACTACAAGATG 58.762 41.667 0.00 0.00 0.00 2.90
2028 2492 5.483685 TGCCAACTAGTGAACTACAAGAT 57.516 39.130 0.00 0.00 0.00 2.40
2029 2493 4.948341 TGCCAACTAGTGAACTACAAGA 57.052 40.909 0.00 0.00 0.00 3.02
2030 2494 5.482908 AGATGCCAACTAGTGAACTACAAG 58.517 41.667 0.00 0.00 0.00 3.16
2031 2495 5.483685 AGATGCCAACTAGTGAACTACAA 57.516 39.130 0.00 0.00 0.00 2.41
2032 2496 5.483685 AAGATGCCAACTAGTGAACTACA 57.516 39.130 0.00 0.00 0.00 2.74
2033 2497 6.426937 TGAAAAGATGCCAACTAGTGAACTAC 59.573 38.462 0.00 0.00 0.00 2.73
2034 2498 6.530120 TGAAAAGATGCCAACTAGTGAACTA 58.470 36.000 0.00 0.00 0.00 2.24
2035 2499 5.376625 TGAAAAGATGCCAACTAGTGAACT 58.623 37.500 0.00 0.00 0.00 3.01
2036 2500 5.689383 TGAAAAGATGCCAACTAGTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
2037 2501 7.168219 ACTATGAAAAGATGCCAACTAGTGAA 58.832 34.615 0.00 0.00 0.00 3.18
2038 2502 6.711277 ACTATGAAAAGATGCCAACTAGTGA 58.289 36.000 0.00 0.00 0.00 3.41
2039 2503 6.992063 ACTATGAAAAGATGCCAACTAGTG 57.008 37.500 0.00 0.00 0.00 2.74
2040 2504 7.119846 GTCAACTATGAAAAGATGCCAACTAGT 59.880 37.037 0.00 0.00 37.30 2.57
2041 2505 7.119699 TGTCAACTATGAAAAGATGCCAACTAG 59.880 37.037 0.00 0.00 37.30 2.57
2042 2506 6.939730 TGTCAACTATGAAAAGATGCCAACTA 59.060 34.615 0.00 0.00 37.30 2.24
2043 2507 5.769662 TGTCAACTATGAAAAGATGCCAACT 59.230 36.000 0.00 0.00 37.30 3.16
2044 2508 6.012658 TGTCAACTATGAAAAGATGCCAAC 57.987 37.500 0.00 0.00 37.30 3.77
2045 2509 6.433716 TGATGTCAACTATGAAAAGATGCCAA 59.566 34.615 0.00 0.00 37.30 4.52
2046 2510 5.945191 TGATGTCAACTATGAAAAGATGCCA 59.055 36.000 0.00 0.00 37.30 4.92
2047 2511 6.094603 ACTGATGTCAACTATGAAAAGATGCC 59.905 38.462 0.00 0.00 37.30 4.40
2048 2512 6.965500 CACTGATGTCAACTATGAAAAGATGC 59.035 38.462 0.00 0.00 37.30 3.91
2049 2513 7.120285 ACCACTGATGTCAACTATGAAAAGATG 59.880 37.037 0.00 0.00 37.30 2.90
2050 2514 7.170965 ACCACTGATGTCAACTATGAAAAGAT 58.829 34.615 0.00 0.00 37.30 2.40
2051 2515 6.533730 ACCACTGATGTCAACTATGAAAAGA 58.466 36.000 0.00 0.00 37.30 2.52
2052 2516 6.427853 TGACCACTGATGTCAACTATGAAAAG 59.572 38.462 0.00 0.00 39.66 2.27
2053 2517 6.204688 GTGACCACTGATGTCAACTATGAAAA 59.795 38.462 5.79 0.00 43.82 2.29
2054 2518 5.700832 GTGACCACTGATGTCAACTATGAAA 59.299 40.000 5.79 0.00 43.82 2.69
2055 2519 5.012046 AGTGACCACTGATGTCAACTATGAA 59.988 40.000 1.31 0.00 43.82 2.57
2056 2520 4.528206 AGTGACCACTGATGTCAACTATGA 59.472 41.667 1.31 0.00 43.82 2.15
2057 2521 4.825422 AGTGACCACTGATGTCAACTATG 58.175 43.478 1.31 0.00 43.82 2.23
2058 2522 5.489792 AAGTGACCACTGATGTCAACTAT 57.510 39.130 3.13 0.00 43.82 2.12
2059 2523 4.955811 AAGTGACCACTGATGTCAACTA 57.044 40.909 3.13 0.00 43.82 2.24
2060 2524 3.845781 AAGTGACCACTGATGTCAACT 57.154 42.857 3.13 4.22 43.82 3.16
2061 2525 4.900635 AAAAGTGACCACTGATGTCAAC 57.099 40.909 3.13 2.52 43.82 3.18
2101 2565 2.675519 GATGCGACAGCTTCTCCAG 58.324 57.895 0.00 0.00 45.42 3.86
2102 2566 4.919653 GATGCGACAGCTTCTCCA 57.080 55.556 0.00 0.00 45.42 3.86
2106 2570 1.880340 CGGGAGATGCGACAGCTTC 60.880 63.158 0.00 0.00 44.88 3.86
2107 2571 2.185350 CGGGAGATGCGACAGCTT 59.815 61.111 0.00 0.00 45.42 3.74
2108 2572 4.521062 GCGGGAGATGCGACAGCT 62.521 66.667 0.00 0.00 45.42 4.24
2123 2587 2.705934 ATACCTCAGCATCTGCCGCG 62.706 60.000 0.00 0.00 43.38 6.46
2124 2588 1.070445 ATACCTCAGCATCTGCCGC 59.930 57.895 0.00 0.00 43.38 6.53
2125 2589 0.105593 ACATACCTCAGCATCTGCCG 59.894 55.000 0.00 0.00 43.38 5.69
2126 2590 1.590932 CACATACCTCAGCATCTGCC 58.409 55.000 0.00 0.00 43.38 4.85
2331 3243 3.578282 TCATGAGGACAACTGCAAGACTA 59.422 43.478 0.00 0.00 37.43 2.59
2484 3398 9.979578 AGAAAATGAAAGCATTACACAAACATA 57.020 25.926 0.00 0.00 43.71 2.29
2724 3638 1.200760 TGTGGCTGGTAGGACTGCAT 61.201 55.000 0.00 0.00 37.08 3.96
2906 3820 2.039480 CCATGTAGTGATCTGGGGATGG 59.961 54.545 0.00 0.00 31.46 3.51
3130 4044 1.280421 GCTTCTCCTGGTCCATGTTCT 59.720 52.381 0.00 0.00 0.00 3.01
3183 4097 6.095720 TGGAAAAAGTGGTCGTTTTCACTAAT 59.904 34.615 16.22 0.00 46.14 1.73
3295 4212 5.565637 CGCATCAAGGTATAGTATCTGCACT 60.566 44.000 0.00 0.00 0.00 4.40
3458 4375 9.793259 ATAGAAGGAAGACACTGTTGAAAAATA 57.207 29.630 0.00 0.00 0.00 1.40
3459 4376 8.571336 CATAGAAGGAAGACACTGTTGAAAAAT 58.429 33.333 0.00 0.00 0.00 1.82
3962 4887 4.776349 ACCTGCGGATTGTATGTTATTGA 58.224 39.130 0.00 0.00 0.00 2.57
4089 5015 7.466746 ACATACATCACAGCCAACTAAATTT 57.533 32.000 0.00 0.00 0.00 1.82
4148 5074 6.152661 TGAACACTTTGACACTCCAAAAGAAT 59.847 34.615 1.67 0.00 35.83 2.40
4159 5085 6.326375 TGGTTGTAAATGAACACTTTGACAC 58.674 36.000 0.00 0.00 0.00 3.67
4160 5086 6.516739 TGGTTGTAAATGAACACTTTGACA 57.483 33.333 0.00 0.00 0.00 3.58
4403 5332 2.035066 GCACAGCTCATTGACCACTTTT 59.965 45.455 0.00 0.00 0.00 2.27
4564 5493 5.185249 TCTTCTTCTTGTATAGTTGACCGCT 59.815 40.000 0.00 0.00 0.00 5.52
4721 5654 1.220236 CTCCTCATCCTCCTCCTCCTT 59.780 57.143 0.00 0.00 0.00 3.36
4928 5891 3.382865 TCATCATCGTCTTCTTCCCTCTG 59.617 47.826 0.00 0.00 0.00 3.35
4957 5920 4.647564 ATCATCACCATAACCATCCTCC 57.352 45.455 0.00 0.00 0.00 4.30
5103 6066 3.066342 CCTGCTACTCAATGAATTGCTGG 59.934 47.826 9.12 9.12 37.68 4.85
5137 6100 7.102346 TCCAACAAGTTTTGTCAATCAACATT 58.898 30.769 3.59 0.00 44.59 2.71
5257 6220 1.152839 CACGGGAAAGGTGGTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
5331 6294 4.940046 CAGCATCACTTGATAAGAACAGGT 59.060 41.667 0.00 0.00 32.63 4.00
5422 6385 8.333235 TCTGGGAGTTGCTTTAAATATTCCTTA 58.667 33.333 0.00 0.00 0.00 2.69
5473 6436 2.988684 GGGTTTGCCGTGGATGCA 60.989 61.111 0.00 0.00 36.84 3.96
5516 6479 7.463961 ACTGCAGATTCTTCTTCATTGAAAT 57.536 32.000 23.35 0.00 0.00 2.17
5629 6592 0.251354 TGGTTGGCTCTCTGCTCATC 59.749 55.000 0.00 0.00 42.39 2.92
5630 6593 0.694771 TTGGTTGGCTCTCTGCTCAT 59.305 50.000 0.00 0.00 42.39 2.90
5883 6846 2.156917 CTGACACATCAGTTGGCACAT 58.843 47.619 0.00 0.00 46.39 3.21
5966 6929 0.472925 TGAGTAGGCACCTTGGGACA 60.473 55.000 0.00 0.00 0.00 4.02
6140 7103 3.503363 GCATCATTCACTGACTTGGTTCA 59.497 43.478 0.00 0.00 36.48 3.18
6175 7138 3.011517 AGGGCATCTCCTTGCGGT 61.012 61.111 0.00 0.00 43.71 5.68
6429 7393 2.265367 TCAGGGTGTGGCAATTCTCTA 58.735 47.619 0.00 0.00 0.00 2.43
6544 7508 5.598416 TGTTGTAGTCGATGAATGGAGAT 57.402 39.130 0.00 0.00 0.00 2.75
6612 7576 1.707989 TGACCCAATACAAGAGGGCAA 59.292 47.619 0.00 0.00 46.88 4.52
6633 7597 2.026542 TCATCTGCTCCTTTGTGATGCT 60.027 45.455 0.00 0.00 35.74 3.79
6780 7744 7.789273 ATGCATGAAAATGAAAACAGAACAA 57.211 28.000 0.00 0.00 0.00 2.83
6813 7780 0.601046 CTCGAAAGGTCACAGCAGCA 60.601 55.000 0.00 0.00 0.00 4.41
6826 7793 7.589954 GCAATAAAAAGACAAGTTAGCTCGAAA 59.410 33.333 0.00 0.00 0.00 3.46
6960 7930 6.372381 TGATGTGTAAGATTCCTGTGTCAATG 59.628 38.462 0.00 0.00 0.00 2.82
6966 7936 5.430886 TCCATGATGTGTAAGATTCCTGTG 58.569 41.667 0.00 0.00 0.00 3.66
6969 7939 8.038862 AGTTATCCATGATGTGTAAGATTCCT 57.961 34.615 0.00 0.00 0.00 3.36
7073 8043 8.327429 CAACGAAGAAAATGCTACAAAACAAAT 58.673 29.630 0.00 0.00 0.00 2.32
7080 8050 4.576873 TGGTCAACGAAGAAAATGCTACAA 59.423 37.500 0.00 0.00 0.00 2.41
7088 8058 4.037446 CCCTCAAATGGTCAACGAAGAAAA 59.963 41.667 0.00 0.00 0.00 2.29
7092 8062 2.744202 CTCCCTCAAATGGTCAACGAAG 59.256 50.000 0.00 0.00 0.00 3.79
7174 8144 3.524095 TTCACATTGTGGATCCCTTGT 57.476 42.857 16.46 4.76 33.87 3.16
7207 8177 7.041644 TCGAGACGGTTCTTGTAATCAAATTTT 60.042 33.333 0.00 0.00 35.01 1.82
7210 8180 5.347907 GTCGAGACGGTTCTTGTAATCAAAT 59.652 40.000 0.00 0.00 35.01 2.32
7237 8207 3.731867 GCACAACACTCACCAAGTCTTTG 60.732 47.826 0.00 0.00 35.45 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.