Multiple sequence alignment - TraesCS3A01G408700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G408700 chr3A 100.000 3215 0 0 1 3215 653419172 653415958 0.000000e+00 5938.0
1 TraesCS3A01G408700 chr3A 98.086 209 4 0 2 210 424123597 424123805 6.550000e-97 364.0
2 TraesCS3A01G408700 chr3A 96.744 215 7 0 2 216 528736132 528735918 3.050000e-95 359.0
3 TraesCS3A01G408700 chr3A 97.849 93 1 1 209 300 102529593 102529685 3.320000e-35 159.0
4 TraesCS3A01G408700 chr3A 94.118 102 4 2 209 308 151313782 151313883 1.540000e-33 154.0
5 TraesCS3A01G408700 chr3A 92.453 106 4 4 209 311 373324588 373324484 7.190000e-32 148.0
6 TraesCS3A01G408700 chr3D 92.870 1627 67 30 751 2331 517812990 517811367 0.000000e+00 2316.0
7 TraesCS3A01G408700 chr3D 96.871 863 27 0 2353 3215 517810835 517809973 0.000000e+00 1445.0
8 TraesCS3A01G408700 chr3D 85.494 324 25 10 428 733 517813294 517812975 5.180000e-83 318.0
9 TraesCS3A01G408700 chr6A 98.551 207 3 0 2 208 108293004 108292798 1.820000e-97 366.0
10 TraesCS3A01G408700 chr6A 95.982 224 7 2 2 223 51835551 51835774 2.360000e-96 363.0
11 TraesCS3A01G408700 chr6A 93.004 243 10 6 2 239 590507574 590507334 6.600000e-92 348.0
12 TraesCS3A01G408700 chr6A 96.842 95 1 2 210 303 383945364 383945271 1.190000e-34 158.0
13 TraesCS3A01G408700 chr1A 98.095 210 4 0 2 211 361654066 361653857 1.820000e-97 366.0
14 TraesCS3A01G408700 chr1A 98.889 90 0 1 209 297 204830506 204830595 3.320000e-35 159.0
15 TraesCS3A01G408700 chr7A 97.630 211 5 0 2 212 450262289 450262499 2.360000e-96 363.0
16 TraesCS3A01G408700 chr7A 79.181 293 55 6 1279 1568 156267970 156268259 7.040000e-47 198.0
17 TraesCS3A01G408700 chr4A 96.347 219 6 2 2 220 99268702 99268486 3.050000e-95 359.0
18 TraesCS3A01G408700 chr5A 92.308 247 14 5 2 247 500852703 500852945 2.370000e-91 346.0
19 TraesCS3A01G408700 chr5A 95.050 101 3 2 209 308 644350713 644350812 1.190000e-34 158.0
20 TraesCS3A01G408700 chr5A 89.167 120 6 7 209 321 471471069 471470950 3.340000e-30 143.0
21 TraesCS3A01G408700 chr5A 72.368 456 101 24 1693 2134 452267513 452267069 1.570000e-23 121.0
22 TraesCS3A01G408700 chr5A 72.113 459 97 27 1693 2134 452210436 452209992 3.390000e-20 110.0
23 TraesCS3A01G408700 chr2A 80.399 301 50 9 1274 1569 33343765 33343469 1.500000e-53 220.0
24 TraesCS3A01G408700 chr2A 76.499 417 87 11 1693 2102 33381698 33381286 1.940000e-52 217.0
25 TraesCS3A01G408700 chr2A 77.850 307 60 8 1693 1995 33563390 33563088 1.970000e-42 183.0
26 TraesCS3A01G408700 chr2D 80.066 301 51 9 1274 1569 31561009 31560713 6.990000e-52 215.0
27 TraesCS3A01G408700 chr2D 79.016 305 60 4 1693 1995 31729054 31728752 4.200000e-49 206.0
28 TraesCS3A01G408700 chr2D 80.000 290 46 12 1285 1569 31729382 31729100 1.510000e-48 204.0
29 TraesCS3A01G408700 chr7D 81.707 246 42 3 1325 1568 154377011 154377255 5.440000e-48 202.0
30 TraesCS3A01G408700 chr7D 94.175 103 4 2 209 310 598495438 598495337 4.290000e-34 156.0
31 TraesCS3A01G408700 chr7B 81.707 246 42 3 1325 1568 116493523 116493767 5.440000e-48 202.0
32 TraesCS3A01G408700 chrUn 81.070 243 40 5 1694 1933 17253439 17253678 4.230000e-44 189.0
33 TraesCS3A01G408700 chr4B 98.889 90 0 1 209 297 484585566 484585477 3.320000e-35 159.0
34 TraesCS3A01G408700 chr5B 71.616 458 101 25 1693 2134 416390678 416391122 7.340000e-17 99.0
35 TraesCS3A01G408700 chr5D 71.304 460 99 29 1693 2134 353432795 353433239 1.590000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G408700 chr3A 653415958 653419172 3214 True 5938.000000 5938 100.000 1 3215 1 chr3A.!!$R3 3214
1 TraesCS3A01G408700 chr3D 517809973 517813294 3321 True 1359.666667 2316 91.745 428 3215 3 chr3D.!!$R1 2787
2 TraesCS3A01G408700 chr2D 31728752 31729382 630 True 205.000000 206 79.508 1285 1995 2 chr2D.!!$R2 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.107066 TACCATCCGGTCTAGACGCA 60.107 55.0 16.56 3.29 44.71 5.24 F
164 165 0.248661 CATCCGGTCTAGACGCACAG 60.249 60.0 16.56 5.56 0.00 3.66 F
546 547 0.307760 GTGGTTTTGACTCGTGCAGG 59.692 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1680 1734 0.317160 CCTGGAAGCTCGTGTACACA 59.683 55.000 24.98 11.6 0.00 3.72 R
2157 2211 1.985116 GACCTTCCTGGGCTCGTCT 60.985 63.158 0.00 0.0 41.93 4.18 R
2395 2973 2.224079 CACAAAGTGCGTTGCAGATAGT 59.776 45.455 0.00 0.0 40.08 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.074627 GTAGGGTTTAGCCTCCTTGATC 57.925 50.000 3.32 0.00 37.43 2.92
22 23 2.852130 AGGGTTTAGCCTCCTTGATCT 58.148 47.619 0.00 0.00 37.43 2.75
23 24 2.774809 AGGGTTTAGCCTCCTTGATCTC 59.225 50.000 0.00 0.00 37.43 2.75
24 25 2.483889 GGGTTTAGCCTCCTTGATCTCG 60.484 54.545 0.00 0.00 37.43 4.04
25 26 2.168728 GGTTTAGCCTCCTTGATCTCGT 59.831 50.000 0.00 0.00 0.00 4.18
26 27 3.190874 GTTTAGCCTCCTTGATCTCGTG 58.809 50.000 0.00 0.00 0.00 4.35
27 28 1.403814 TAGCCTCCTTGATCTCGTGG 58.596 55.000 0.00 0.00 0.00 4.94
28 29 0.616111 AGCCTCCTTGATCTCGTGGT 60.616 55.000 0.00 0.00 0.00 4.16
29 30 1.112113 GCCTCCTTGATCTCGTGGTA 58.888 55.000 0.00 0.00 0.00 3.25
30 31 1.202428 GCCTCCTTGATCTCGTGGTAC 60.202 57.143 0.00 0.00 0.00 3.34
31 32 2.100197 CCTCCTTGATCTCGTGGTACA 58.900 52.381 0.00 0.00 0.00 2.90
32 33 2.695666 CCTCCTTGATCTCGTGGTACAT 59.304 50.000 0.00 0.00 44.52 2.29
33 34 3.243569 CCTCCTTGATCTCGTGGTACATC 60.244 52.174 0.00 0.00 44.52 3.06
34 35 3.632333 TCCTTGATCTCGTGGTACATCT 58.368 45.455 0.00 0.00 44.52 2.90
35 36 4.788679 TCCTTGATCTCGTGGTACATCTA 58.211 43.478 0.00 0.00 44.52 1.98
36 37 4.579340 TCCTTGATCTCGTGGTACATCTAC 59.421 45.833 0.00 0.00 44.52 2.59
37 38 4.580995 CCTTGATCTCGTGGTACATCTACT 59.419 45.833 0.00 0.00 44.52 2.57
38 39 5.278071 CCTTGATCTCGTGGTACATCTACTC 60.278 48.000 0.00 0.00 44.52 2.59
39 40 5.037383 TGATCTCGTGGTACATCTACTCT 57.963 43.478 0.00 0.00 44.52 3.24
40 41 5.437946 TGATCTCGTGGTACATCTACTCTT 58.562 41.667 0.00 0.00 44.52 2.85
41 42 5.297029 TGATCTCGTGGTACATCTACTCTTG 59.703 44.000 0.00 0.00 44.52 3.02
42 43 4.586884 TCTCGTGGTACATCTACTCTTGT 58.413 43.478 0.00 0.00 44.52 3.16
43 44 5.737860 TCTCGTGGTACATCTACTCTTGTA 58.262 41.667 0.00 0.00 44.52 2.41
44 45 5.583854 TCTCGTGGTACATCTACTCTTGTAC 59.416 44.000 4.96 4.96 44.52 2.90
45 46 5.494724 TCGTGGTACATCTACTCTTGTACT 58.505 41.667 11.63 0.00 44.80 2.73
46 47 6.643388 TCGTGGTACATCTACTCTTGTACTA 58.357 40.000 11.63 4.60 44.80 1.82
50 51 7.627311 TGGTACATCTACTCTTGTACTACTCA 58.373 38.462 11.63 1.18 44.80 3.41
51 52 8.272889 TGGTACATCTACTCTTGTACTACTCAT 58.727 37.037 11.63 0.00 44.80 2.90
52 53 9.775854 GGTACATCTACTCTTGTACTACTCATA 57.224 37.037 11.63 0.00 44.80 2.15
77 78 7.425577 TCATCAATATTAATCAAGCAGGACG 57.574 36.000 0.00 0.00 0.00 4.79
78 79 6.992123 TCATCAATATTAATCAAGCAGGACGT 59.008 34.615 0.00 0.00 0.00 4.34
79 80 8.147704 TCATCAATATTAATCAAGCAGGACGTA 58.852 33.333 0.00 0.00 0.00 3.57
80 81 7.946655 TCAATATTAATCAAGCAGGACGTAG 57.053 36.000 0.00 0.00 0.00 3.51
81 82 6.929049 TCAATATTAATCAAGCAGGACGTAGG 59.071 38.462 0.00 0.00 0.00 3.18
82 83 3.536956 TTAATCAAGCAGGACGTAGGG 57.463 47.619 0.00 0.00 0.00 3.53
83 84 1.276622 AATCAAGCAGGACGTAGGGT 58.723 50.000 0.00 0.00 0.00 4.34
84 85 1.276622 ATCAAGCAGGACGTAGGGTT 58.723 50.000 0.00 0.00 0.00 4.11
85 86 1.053424 TCAAGCAGGACGTAGGGTTT 58.947 50.000 0.00 0.00 0.00 3.27
86 87 1.418637 TCAAGCAGGACGTAGGGTTTT 59.581 47.619 0.00 0.00 0.00 2.43
87 88 2.633967 TCAAGCAGGACGTAGGGTTTTA 59.366 45.455 0.00 0.00 0.00 1.52
88 89 2.740447 CAAGCAGGACGTAGGGTTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
89 90 1.277273 AGCAGGACGTAGGGTTTTACC 59.723 52.381 0.00 0.00 37.60 2.85
90 91 1.277273 GCAGGACGTAGGGTTTTACCT 59.723 52.381 0.00 0.00 44.75 3.08
91 92 2.676176 GCAGGACGTAGGGTTTTACCTC 60.676 54.545 0.00 0.00 42.09 3.85
92 93 2.093816 CAGGACGTAGGGTTTTACCTCC 60.094 54.545 0.00 0.00 42.09 4.30
93 94 1.901833 GGACGTAGGGTTTTACCTCCA 59.098 52.381 0.00 0.00 42.09 3.86
94 95 2.502947 GGACGTAGGGTTTTACCTCCAT 59.497 50.000 0.00 0.00 42.09 3.41
95 96 3.431346 GGACGTAGGGTTTTACCTCCATC 60.431 52.174 0.00 0.00 42.09 3.51
96 97 3.175594 ACGTAGGGTTTTACCTCCATCA 58.824 45.455 0.00 0.00 42.09 3.07
97 98 3.583966 ACGTAGGGTTTTACCTCCATCAA 59.416 43.478 0.00 0.00 42.09 2.57
98 99 4.189231 CGTAGGGTTTTACCTCCATCAAG 58.811 47.826 0.00 0.00 42.09 3.02
99 100 4.081309 CGTAGGGTTTTACCTCCATCAAGA 60.081 45.833 0.00 0.00 42.09 3.02
100 101 4.576330 AGGGTTTTACCTCCATCAAGAG 57.424 45.455 0.00 0.00 38.64 2.85
106 107 2.507944 CTCCATCAAGAGGGCCCG 59.492 66.667 18.44 1.05 31.15 6.13
107 108 2.040442 TCCATCAAGAGGGCCCGA 59.960 61.111 18.44 8.04 31.15 5.14
108 109 1.615124 TCCATCAAGAGGGCCCGAA 60.615 57.895 18.44 1.01 31.15 4.30
109 110 1.452108 CCATCAAGAGGGCCCGAAC 60.452 63.158 18.44 12.45 0.00 3.95
110 111 1.452108 CATCAAGAGGGCCCGAACC 60.452 63.158 18.44 7.31 0.00 3.62
111 112 1.616628 ATCAAGAGGGCCCGAACCT 60.617 57.895 18.44 9.75 42.18 3.50
112 113 1.915078 ATCAAGAGGGCCCGAACCTG 61.915 60.000 18.44 12.14 38.79 4.00
113 114 3.330720 AAGAGGGCCCGAACCTGG 61.331 66.667 18.44 0.00 38.79 4.45
121 122 3.729726 CCCGAACCTGGGTAAAACA 57.270 52.632 0.00 0.00 44.76 2.83
122 123 2.209690 CCCGAACCTGGGTAAAACAT 57.790 50.000 0.00 0.00 44.76 2.71
123 124 2.089201 CCCGAACCTGGGTAAAACATC 58.911 52.381 0.00 0.00 44.76 3.06
124 125 1.735571 CCGAACCTGGGTAAAACATCG 59.264 52.381 0.00 0.00 0.00 3.84
125 126 2.419667 CGAACCTGGGTAAAACATCGT 58.580 47.619 0.00 0.00 0.00 3.73
126 127 2.158841 CGAACCTGGGTAAAACATCGTG 59.841 50.000 0.00 0.00 0.00 4.35
127 128 2.943036 ACCTGGGTAAAACATCGTGT 57.057 45.000 0.00 0.00 0.00 4.49
128 129 3.217681 ACCTGGGTAAAACATCGTGTT 57.782 42.857 0.00 0.00 43.41 3.32
129 130 3.143728 ACCTGGGTAAAACATCGTGTTC 58.856 45.455 0.00 0.00 40.14 3.18
130 131 2.486592 CCTGGGTAAAACATCGTGTTCC 59.513 50.000 4.28 2.91 40.14 3.62
131 132 2.486592 CTGGGTAAAACATCGTGTTCCC 59.513 50.000 14.07 14.07 40.14 3.97
132 133 1.814394 GGGTAAAACATCGTGTTCCCC 59.186 52.381 11.67 12.21 40.14 4.81
133 134 1.465777 GGTAAAACATCGTGTTCCCCG 59.534 52.381 4.28 0.00 40.14 5.73
134 135 1.135888 GTAAAACATCGTGTTCCCCGC 60.136 52.381 4.28 0.00 40.14 6.13
135 136 1.520600 AAAACATCGTGTTCCCCGCC 61.521 55.000 4.28 0.00 40.14 6.13
136 137 2.406002 AAACATCGTGTTCCCCGCCT 62.406 55.000 4.28 0.00 40.14 5.52
137 138 2.511600 CATCGTGTTCCCCGCCTC 60.512 66.667 0.00 0.00 0.00 4.70
138 139 3.782443 ATCGTGTTCCCCGCCTCC 61.782 66.667 0.00 0.00 0.00 4.30
140 141 4.760047 CGTGTTCCCCGCCTCCTG 62.760 72.222 0.00 0.00 0.00 3.86
141 142 3.637273 GTGTTCCCCGCCTCCTGT 61.637 66.667 0.00 0.00 0.00 4.00
142 143 2.852075 TGTTCCCCGCCTCCTGTT 60.852 61.111 0.00 0.00 0.00 3.16
143 144 1.536907 TGTTCCCCGCCTCCTGTTA 60.537 57.895 0.00 0.00 0.00 2.41
144 145 1.078637 GTTCCCCGCCTCCTGTTAC 60.079 63.158 0.00 0.00 0.00 2.50
145 146 2.295602 TTCCCCGCCTCCTGTTACC 61.296 63.158 0.00 0.00 0.00 2.85
146 147 3.006728 CCCCGCCTCCTGTTACCA 61.007 66.667 0.00 0.00 0.00 3.25
147 148 2.375345 CCCCGCCTCCTGTTACCAT 61.375 63.158 0.00 0.00 0.00 3.55
148 149 1.146263 CCCGCCTCCTGTTACCATC 59.854 63.158 0.00 0.00 0.00 3.51
149 150 1.146263 CCGCCTCCTGTTACCATCC 59.854 63.158 0.00 0.00 0.00 3.51
150 151 1.227263 CGCCTCCTGTTACCATCCG 60.227 63.158 0.00 0.00 0.00 4.18
151 152 1.146263 GCCTCCTGTTACCATCCGG 59.854 63.158 0.00 0.00 38.77 5.14
153 154 0.464452 CCTCCTGTTACCATCCGGTC 59.536 60.000 0.00 0.00 44.71 4.79
154 155 1.486211 CTCCTGTTACCATCCGGTCT 58.514 55.000 0.00 0.00 44.71 3.85
155 156 2.662866 CTCCTGTTACCATCCGGTCTA 58.337 52.381 0.00 0.00 44.71 2.59
156 157 2.623889 CTCCTGTTACCATCCGGTCTAG 59.376 54.545 0.00 0.00 44.71 2.43
157 158 2.242965 TCCTGTTACCATCCGGTCTAGA 59.757 50.000 0.00 0.00 44.71 2.43
158 159 2.361438 CCTGTTACCATCCGGTCTAGAC 59.639 54.545 14.87 14.87 44.71 2.59
159 160 2.019249 TGTTACCATCCGGTCTAGACG 58.981 52.381 16.56 11.49 44.71 4.18
160 161 1.027357 TTACCATCCGGTCTAGACGC 58.973 55.000 16.56 8.77 44.71 5.19
161 162 0.107066 TACCATCCGGTCTAGACGCA 60.107 55.000 16.56 3.29 44.71 5.24
162 163 1.065928 CCATCCGGTCTAGACGCAC 59.934 63.158 16.56 2.30 0.00 5.34
163 164 1.663379 CCATCCGGTCTAGACGCACA 61.663 60.000 16.56 1.13 0.00 4.57
164 165 0.248661 CATCCGGTCTAGACGCACAG 60.249 60.000 16.56 5.56 0.00 3.66
165 166 0.680280 ATCCGGTCTAGACGCACAGT 60.680 55.000 16.56 0.00 0.00 3.55
166 167 0.892358 TCCGGTCTAGACGCACAGTT 60.892 55.000 16.56 0.00 0.00 3.16
167 168 0.456312 CCGGTCTAGACGCACAGTTC 60.456 60.000 16.56 0.00 0.00 3.01
168 169 0.793478 CGGTCTAGACGCACAGTTCG 60.793 60.000 16.56 8.00 0.00 3.95
169 170 0.456312 GGTCTAGACGCACAGTTCGG 60.456 60.000 16.56 0.00 0.00 4.30
170 171 0.456312 GTCTAGACGCACAGTTCGGG 60.456 60.000 7.22 0.00 0.00 5.14
171 172 0.607217 TCTAGACGCACAGTTCGGGA 60.607 55.000 0.00 0.00 0.00 5.14
172 173 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
173 174 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
174 175 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
176 177 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
177 178 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
178 179 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
179 180 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
180 181 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
181 182 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
185 186 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
186 187 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
187 188 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
188 189 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
189 190 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
190 191 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
191 192 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
192 193 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
193 194 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
194 195 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
196 197 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
197 198 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
198 199 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
199 200 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
200 201 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
201 202 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
202 203 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
203 204 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
212 213 2.830104 GGTTTTGACACCGACACTACT 58.170 47.619 0.00 0.00 0.00 2.57
213 214 2.798847 GGTTTTGACACCGACACTACTC 59.201 50.000 0.00 0.00 0.00 2.59
214 215 3.450578 GTTTTGACACCGACACTACTCA 58.549 45.455 0.00 0.00 0.00 3.41
215 216 4.056050 GTTTTGACACCGACACTACTCAT 58.944 43.478 0.00 0.00 0.00 2.90
216 217 5.224888 GTTTTGACACCGACACTACTCATA 58.775 41.667 0.00 0.00 0.00 2.15
217 218 4.696899 TTGACACCGACACTACTCATAG 57.303 45.455 0.00 0.00 34.25 2.23
218 219 3.014623 TGACACCGACACTACTCATAGG 58.985 50.000 0.00 0.00 32.08 2.57
219 220 3.276857 GACACCGACACTACTCATAGGA 58.723 50.000 0.00 0.00 32.08 2.94
220 221 3.884091 GACACCGACACTACTCATAGGAT 59.116 47.826 0.00 0.00 32.08 3.24
221 222 4.279145 ACACCGACACTACTCATAGGATT 58.721 43.478 0.00 0.00 32.08 3.01
222 223 4.710375 ACACCGACACTACTCATAGGATTT 59.290 41.667 0.00 0.00 32.08 2.17
223 224 5.043903 CACCGACACTACTCATAGGATTTG 58.956 45.833 0.00 0.00 32.08 2.32
224 225 4.954202 ACCGACACTACTCATAGGATTTGA 59.046 41.667 0.00 0.00 32.08 2.69
225 226 5.067936 ACCGACACTACTCATAGGATTTGAG 59.932 44.000 0.00 0.00 44.95 3.02
226 227 5.299531 CCGACACTACTCATAGGATTTGAGA 59.700 44.000 7.63 0.00 42.63 3.27
227 228 6.015856 CCGACACTACTCATAGGATTTGAGAT 60.016 42.308 7.63 0.00 42.63 2.75
228 229 7.175119 CCGACACTACTCATAGGATTTGAGATA 59.825 40.741 7.63 0.00 42.63 1.98
229 230 8.018520 CGACACTACTCATAGGATTTGAGATAC 58.981 40.741 7.63 0.00 42.63 2.24
230 231 8.768501 ACACTACTCATAGGATTTGAGATACA 57.231 34.615 7.63 0.00 42.63 2.29
231 232 9.373450 ACACTACTCATAGGATTTGAGATACAT 57.627 33.333 7.63 0.00 42.63 2.29
232 233 9.636879 CACTACTCATAGGATTTGAGATACATG 57.363 37.037 7.63 0.00 42.63 3.21
233 234 9.373450 ACTACTCATAGGATTTGAGATACATGT 57.627 33.333 2.69 2.69 42.63 3.21
234 235 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
235 236 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
236 237 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
237 238 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
238 239 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
239 240 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
248 249 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
249 250 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
250 251 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
251 252 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
252 253 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
253 254 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
254 255 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
255 256 8.900781 CATGTCATCTCATTTCCTACAAGATTT 58.099 33.333 0.00 0.00 0.00 2.17
256 257 8.498054 TGTCATCTCATTTCCTACAAGATTTC 57.502 34.615 0.00 0.00 0.00 2.17
257 258 8.324306 TGTCATCTCATTTCCTACAAGATTTCT 58.676 33.333 0.00 0.00 0.00 2.52
258 259 9.823647 GTCATCTCATTTCCTACAAGATTTCTA 57.176 33.333 0.00 0.00 0.00 2.10
262 263 9.838339 TCTCATTTCCTACAAGATTTCTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
263 264 9.844257 CTCATTTCCTACAAGATTTCTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
293 294 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
294 295 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
295 296 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
296 297 2.919602 TCCTATGAACCAAAAGAGGCCT 59.080 45.455 3.86 3.86 0.00 5.19
297 298 3.333680 TCCTATGAACCAAAAGAGGCCTT 59.666 43.478 6.77 0.00 0.00 4.35
298 299 4.538490 TCCTATGAACCAAAAGAGGCCTTA 59.462 41.667 6.77 0.00 31.15 2.69
299 300 5.193728 TCCTATGAACCAAAAGAGGCCTTAT 59.806 40.000 6.77 0.00 31.15 1.73
300 301 6.388689 TCCTATGAACCAAAAGAGGCCTTATA 59.611 38.462 6.77 0.00 31.15 0.98
301 302 6.486993 CCTATGAACCAAAAGAGGCCTTATAC 59.513 42.308 6.77 0.00 31.15 1.47
302 303 5.514500 TGAACCAAAAGAGGCCTTATACT 57.486 39.130 6.77 0.00 31.15 2.12
303 304 6.630203 TGAACCAAAAGAGGCCTTATACTA 57.370 37.500 6.77 0.00 31.15 1.82
304 305 7.023171 TGAACCAAAAGAGGCCTTATACTAA 57.977 36.000 6.77 0.00 31.15 2.24
305 306 7.463431 TGAACCAAAAGAGGCCTTATACTAAA 58.537 34.615 6.77 0.00 31.15 1.85
306 307 7.945664 TGAACCAAAAGAGGCCTTATACTAAAA 59.054 33.333 6.77 0.00 31.15 1.52
307 308 8.715190 AACCAAAAGAGGCCTTATACTAAAAA 57.285 30.769 6.77 0.00 31.15 1.94
338 339 9.807921 AGGTCAGAAAGAAAATTTACTATTGGA 57.192 29.630 0.00 0.00 0.00 3.53
346 347 9.533831 AAGAAAATTTACTATTGGAGACATGGT 57.466 29.630 0.00 0.00 42.32 3.55
347 348 9.178758 AGAAAATTTACTATTGGAGACATGGTC 57.821 33.333 0.00 0.00 42.32 4.02
348 349 9.178758 GAAAATTTACTATTGGAGACATGGTCT 57.821 33.333 0.00 0.00 46.42 3.85
360 361 8.367660 TGGAGACATGGTCTATTTATAGATCC 57.632 38.462 7.40 6.87 43.53 3.36
361 362 7.955750 TGGAGACATGGTCTATTTATAGATCCA 59.044 37.037 16.39 16.39 43.53 3.41
362 363 8.816894 GGAGACATGGTCTATTTATAGATCCAA 58.183 37.037 17.28 1.07 43.53 3.53
363 364 9.646427 GAGACATGGTCTATTTATAGATCCAAC 57.354 37.037 17.28 13.60 43.53 3.77
364 365 8.598041 AGACATGGTCTATTTATAGATCCAACC 58.402 37.037 17.28 9.68 41.51 3.77
365 366 8.275187 ACATGGTCTATTTATAGATCCAACCA 57.725 34.615 17.28 13.38 39.28 3.67
366 367 8.894592 ACATGGTCTATTTATAGATCCAACCAT 58.105 33.333 17.28 14.50 40.61 3.55
367 368 9.170734 CATGGTCTATTTATAGATCCAACCATG 57.829 37.037 21.08 21.08 44.79 3.66
368 369 8.275187 TGGTCTATTTATAGATCCAACCATGT 57.725 34.615 13.77 0.00 39.28 3.21
369 370 9.387397 TGGTCTATTTATAGATCCAACCATGTA 57.613 33.333 13.77 0.00 39.28 2.29
372 373 9.944376 TCTATTTATAGATCCAACCATGTAAGC 57.056 33.333 0.00 0.00 34.63 3.09
373 374 9.725019 CTATTTATAGATCCAACCATGTAAGCA 57.275 33.333 0.00 0.00 32.05 3.91
376 377 9.502091 TTTATAGATCCAACCATGTAAGCATAC 57.498 33.333 0.00 0.00 33.30 2.39
377 378 5.636903 AGATCCAACCATGTAAGCATACT 57.363 39.130 0.25 0.00 33.30 2.12
378 379 6.006275 AGATCCAACCATGTAAGCATACTT 57.994 37.500 0.25 0.00 40.07 2.24
379 380 7.136822 AGATCCAACCATGTAAGCATACTTA 57.863 36.000 0.25 0.00 37.33 2.24
380 381 7.749666 AGATCCAACCATGTAAGCATACTTAT 58.250 34.615 0.25 0.00 40.43 1.73
381 382 7.880195 AGATCCAACCATGTAAGCATACTTATC 59.120 37.037 0.25 0.00 40.43 1.75
382 383 7.136822 TCCAACCATGTAAGCATACTTATCT 57.863 36.000 0.25 0.00 40.43 1.98
383 384 7.217200 TCCAACCATGTAAGCATACTTATCTC 58.783 38.462 0.25 0.00 40.43 2.75
384 385 6.992123 CCAACCATGTAAGCATACTTATCTCA 59.008 38.462 0.25 0.00 40.43 3.27
385 386 7.663081 CCAACCATGTAAGCATACTTATCTCAT 59.337 37.037 0.25 0.00 40.43 2.90
386 387 9.060347 CAACCATGTAAGCATACTTATCTCATT 57.940 33.333 0.25 0.00 40.43 2.57
396 397 9.463902 AGCATACTTATCTCATTATACTACCGT 57.536 33.333 0.00 0.00 0.00 4.83
401 402 9.804977 ACTTATCTCATTATACTACCGTAACCT 57.195 33.333 0.00 0.00 0.00 3.50
406 407 9.807649 TCTCATTATACTACCGTAACCTTTTTC 57.192 33.333 0.00 0.00 0.00 2.29
407 408 8.947055 TCATTATACTACCGTAACCTTTTTCC 57.053 34.615 0.00 0.00 0.00 3.13
408 409 8.538701 TCATTATACTACCGTAACCTTTTTCCA 58.461 33.333 0.00 0.00 0.00 3.53
409 410 9.165035 CATTATACTACCGTAACCTTTTTCCAA 57.835 33.333 0.00 0.00 0.00 3.53
410 411 8.546597 TTATACTACCGTAACCTTTTTCCAAC 57.453 34.615 0.00 0.00 0.00 3.77
411 412 4.136796 ACTACCGTAACCTTTTTCCAACC 58.863 43.478 0.00 0.00 0.00 3.77
412 413 3.301794 ACCGTAACCTTTTTCCAACCT 57.698 42.857 0.00 0.00 0.00 3.50
413 414 3.634504 ACCGTAACCTTTTTCCAACCTT 58.365 40.909 0.00 0.00 0.00 3.50
414 415 4.025360 ACCGTAACCTTTTTCCAACCTTT 58.975 39.130 0.00 0.00 0.00 3.11
415 416 4.467082 ACCGTAACCTTTTTCCAACCTTTT 59.533 37.500 0.00 0.00 0.00 2.27
416 417 5.046448 ACCGTAACCTTTTTCCAACCTTTTT 60.046 36.000 0.00 0.00 0.00 1.94
452 453 7.014905 GGTAACCTTTTTCCAACCTAAATGTCT 59.985 37.037 0.00 0.00 0.00 3.41
472 473 6.111768 GTCTAAAATCAGACAACATGCGAT 57.888 37.500 0.00 0.00 43.70 4.58
473 474 6.546395 GTCTAAAATCAGACAACATGCGATT 58.454 36.000 0.00 0.00 43.70 3.34
498 499 4.402583 TCGCATCAAAATCGTGAACATTC 58.597 39.130 0.00 0.00 0.00 2.67
528 529 0.676782 CCGCTCCAAATTTCCGAGGT 60.677 55.000 11.84 0.00 0.00 3.85
542 543 0.859232 CGAGGTGGTTTTGACTCGTG 59.141 55.000 0.00 0.00 45.48 4.35
546 547 0.307760 GTGGTTTTGACTCGTGCAGG 59.692 55.000 0.00 0.00 0.00 4.85
566 571 2.380084 TGGGTCTATCGCACAGTTTC 57.620 50.000 0.00 0.00 34.08 2.78
569 574 1.661112 GGTCTATCGCACAGTTTCAGC 59.339 52.381 0.00 0.00 0.00 4.26
574 579 0.867746 TCGCACAGTTTCAGCACATC 59.132 50.000 0.00 0.00 0.00 3.06
578 583 3.263602 CACAGTTTCAGCACATCTGTG 57.736 47.619 5.95 5.95 45.81 3.66
600 608 2.061028 CTTTGCCGAAGACATTTTGCC 58.939 47.619 0.00 0.00 37.57 4.52
602 610 1.801512 GCCGAAGACATTTTGCCGC 60.802 57.895 0.00 0.00 0.00 6.53
661 670 2.841988 GGCCAGCCAACCAACCAA 60.842 61.111 3.12 0.00 35.81 3.67
701 718 0.798776 CGGTTCAGATGGACAACTGC 59.201 55.000 4.87 0.00 34.57 4.40
702 719 0.798776 GGTTCAGATGGACAACTGCG 59.201 55.000 4.87 0.00 34.57 5.18
710 727 0.747852 TGGACAACTGCGTCTGTACA 59.252 50.000 0.00 0.00 33.91 2.90
711 728 1.137513 GGACAACTGCGTCTGTACAC 58.862 55.000 0.00 0.00 36.12 2.90
712 729 1.269621 GGACAACTGCGTCTGTACACT 60.270 52.381 0.00 0.00 36.12 3.55
713 730 1.787155 GACAACTGCGTCTGTACACTG 59.213 52.381 0.00 0.00 32.92 3.66
714 731 1.136305 ACAACTGCGTCTGTACACTGT 59.864 47.619 0.00 0.00 0.00 3.55
715 732 2.359848 ACAACTGCGTCTGTACACTGTA 59.640 45.455 0.00 0.00 0.00 2.74
716 733 2.701073 ACTGCGTCTGTACACTGTAC 57.299 50.000 11.82 11.82 0.00 2.90
717 734 2.228059 ACTGCGTCTGTACACTGTACT 58.772 47.619 18.16 0.00 0.00 2.73
718 735 2.225963 ACTGCGTCTGTACACTGTACTC 59.774 50.000 18.16 9.26 0.00 2.59
719 736 1.538512 TGCGTCTGTACACTGTACTCC 59.461 52.381 18.16 7.01 0.00 3.85
720 737 1.811359 GCGTCTGTACACTGTACTCCT 59.189 52.381 18.16 0.00 0.00 3.69
721 738 2.159544 GCGTCTGTACACTGTACTCCTC 60.160 54.545 18.16 7.32 0.00 3.71
722 739 3.072211 CGTCTGTACACTGTACTCCTCA 58.928 50.000 18.16 0.00 0.00 3.86
723 740 3.501062 CGTCTGTACACTGTACTCCTCAA 59.499 47.826 18.16 0.00 0.00 3.02
724 741 4.613167 CGTCTGTACACTGTACTCCTCAAC 60.613 50.000 18.16 7.97 0.00 3.18
725 742 3.825014 TCTGTACACTGTACTCCTCAACC 59.175 47.826 18.16 0.00 0.00 3.77
726 743 3.827302 CTGTACACTGTACTCCTCAACCT 59.173 47.826 18.16 0.00 0.00 3.50
727 744 3.572682 TGTACACTGTACTCCTCAACCTG 59.427 47.826 18.16 0.00 0.00 4.00
728 745 1.971357 ACACTGTACTCCTCAACCTGG 59.029 52.381 0.00 0.00 0.00 4.45
729 746 1.276421 CACTGTACTCCTCAACCTGGG 59.724 57.143 0.00 0.00 0.00 4.45
730 747 0.905357 CTGTACTCCTCAACCTGGGG 59.095 60.000 0.00 0.00 40.17 4.96
731 748 0.546747 TGTACTCCTCAACCTGGGGG 60.547 60.000 0.00 0.00 38.96 5.40
732 749 1.615424 TACTCCTCAACCTGGGGGC 60.615 63.158 0.00 0.00 38.96 5.80
733 750 4.101448 CTCCTCAACCTGGGGGCG 62.101 72.222 0.00 0.00 38.96 6.13
736 753 4.410400 CTCAACCTGGGGGCGGAC 62.410 72.222 0.00 0.00 35.63 4.79
783 800 2.632544 CGGACCACGGTCTGTAGCA 61.633 63.158 15.73 0.00 44.19 3.49
945 966 3.764049 GCAGTCCGACGACGCAAC 61.764 66.667 0.64 2.44 44.28 4.17
946 967 2.354188 CAGTCCGACGACGCAACA 60.354 61.111 0.64 0.00 44.28 3.33
962 983 4.885270 CAACACCACCCCACCGCA 62.885 66.667 0.00 0.00 0.00 5.69
983 1004 1.144057 GCCACTACTCACCCATCGG 59.856 63.158 0.00 0.00 0.00 4.18
999 1020 3.075005 GGTCGGGAGCTAGCCACA 61.075 66.667 12.13 0.00 0.00 4.17
1574 1607 2.586079 CTCCGGCATGGTACGCAG 60.586 66.667 0.00 0.00 39.52 5.18
1575 1608 3.071837 TCCGGCATGGTACGCAGA 61.072 61.111 0.00 0.00 39.52 4.26
1577 1610 2.184322 CGGCATGGTACGCAGAGT 59.816 61.111 0.00 0.00 0.00 3.24
1579 1612 1.218047 GGCATGGTACGCAGAGTCA 59.782 57.895 0.00 0.00 0.00 3.41
1595 1628 3.319405 AGAGTCAGAGCTTCTTGAACGAA 59.681 43.478 0.00 0.00 0.00 3.85
1601 1634 4.450419 CAGAGCTTCTTGAACGAATCTGTT 59.550 41.667 0.00 0.00 30.74 3.16
1605 1638 4.906437 GCTTCTTGAACGAATCTGTTGAAC 59.094 41.667 0.00 0.00 30.75 3.18
1606 1639 4.708868 TCTTGAACGAATCTGTTGAACG 57.291 40.909 0.00 0.00 30.75 3.95
1608 1641 4.444388 TCTTGAACGAATCTGTTGAACGAG 59.556 41.667 0.00 0.00 33.14 4.18
1609 1642 3.057019 TGAACGAATCTGTTGAACGAGG 58.943 45.455 0.00 0.00 33.14 4.63
1610 1643 3.243602 TGAACGAATCTGTTGAACGAGGA 60.244 43.478 0.00 0.00 33.14 3.71
1624 1678 4.950475 TGAACGAGGAGTACAATCTCATCT 59.050 41.667 0.00 0.00 41.29 2.90
1635 1689 4.443621 ACAATCTCATCTGACATGCTGAG 58.556 43.478 0.00 0.00 37.14 3.35
1942 1996 4.050934 ACGACGGCAGCGACATGA 62.051 61.111 0.00 0.00 0.00 3.07
1943 1997 3.250323 CGACGGCAGCGACATGAG 61.250 66.667 0.00 0.00 0.00 2.90
2177 2231 2.232298 GACGAGCCCAGGAAGGTCAG 62.232 65.000 0.00 0.00 34.66 3.51
2196 2250 3.265221 TCAGGTTCAGCTGGATCTTTGAT 59.735 43.478 15.13 0.00 0.00 2.57
2221 2286 3.433173 GGAAGTGGTTGTCTAGTGTTGGT 60.433 47.826 0.00 0.00 0.00 3.67
2247 2315 5.879777 TGACTTCTGAGACTGAGATAGTGAG 59.120 44.000 10.01 0.36 40.53 3.51
2258 2326 5.769662 ACTGAGATAGTGAGATGATCCTGTC 59.230 44.000 0.00 0.00 38.49 3.51
2260 2328 5.534278 TGAGATAGTGAGATGATCCTGTCAC 59.466 44.000 17.17 17.17 40.28 3.67
2265 2333 2.762887 TGAGATGATCCTGTCACTGTCC 59.237 50.000 0.00 0.00 40.28 4.02
2278 2346 4.192317 GTCACTGTCCTTCTGTGTTCTTT 58.808 43.478 0.00 0.00 43.39 2.52
2283 2351 5.476945 ACTGTCCTTCTGTGTTCTTTTGTTT 59.523 36.000 0.00 0.00 0.00 2.83
2284 2352 6.015434 ACTGTCCTTCTGTGTTCTTTTGTTTT 60.015 34.615 0.00 0.00 0.00 2.43
2302 2370 6.024552 TGTTTTCTCTCTTTGCAAAGTTGT 57.975 33.333 32.46 0.00 37.31 3.32
2304 2372 6.586082 TGTTTTCTCTCTTTGCAAAGTTGTTC 59.414 34.615 32.46 18.52 37.31 3.18
2311 2379 8.677148 TCTCTTTGCAAAGTTGTTCTATAGTT 57.323 30.769 32.46 0.00 37.31 2.24
2312 2380 9.120538 TCTCTTTGCAAAGTTGTTCTATAGTTT 57.879 29.630 32.46 0.00 37.31 2.66
2334 2402 9.230122 AGTTTCTTTTGAATTTGGAAACAATGT 57.770 25.926 15.77 0.00 44.41 2.71
2337 2405 9.883142 TTCTTTTGAATTTGGAAACAATGTACT 57.117 25.926 0.00 0.00 41.12 2.73
2349 2417 9.214957 TGGAAACAATGTACTACTATCAGTTTG 57.785 33.333 0.00 0.00 37.44 2.93
2350 2418 9.431887 GGAAACAATGTACTACTATCAGTTTGA 57.568 33.333 0.00 0.00 0.00 2.69
2381 2959 7.849804 AATGAACTTACAGTTTGATATCGCT 57.150 32.000 0.00 0.00 38.80 4.93
2395 2973 5.596845 TGATATCGCTGCAACAATGTACTA 58.403 37.500 0.00 0.00 0.00 1.82
2407 2985 6.696198 CAACAATGTACTACTATCTGCAACG 58.304 40.000 0.00 0.00 0.00 4.10
2552 3130 6.933521 AGATATTTGACAGCATGATGTACTCC 59.066 38.462 18.04 5.01 39.69 3.85
2555 3133 0.528466 ACAGCATGATGTACTCCGCG 60.528 55.000 16.38 0.00 39.69 6.46
2561 3139 1.921243 TGATGTACTCCGCGTCATTG 58.079 50.000 4.92 0.00 0.00 2.82
2585 3163 1.651240 ATGCACCATCAGAGCGCAAC 61.651 55.000 11.47 2.78 35.98 4.17
2609 3187 1.852633 TGATCTCATCTGACACCCGT 58.147 50.000 0.00 0.00 0.00 5.28
2612 3190 1.627864 TCTCATCTGACACCCGTTCA 58.372 50.000 0.00 0.00 0.00 3.18
2621 3199 1.546476 GACACCCGTTCAGACATCTCT 59.454 52.381 0.00 0.00 0.00 3.10
2729 3307 0.891373 CTTCCTCGAGTCTTCCTGCA 59.109 55.000 12.31 0.00 0.00 4.41
2787 3365 2.655364 CGGCAGCGACTCCATACG 60.655 66.667 0.00 0.00 0.00 3.06
2892 3470 2.883267 ATTGGGCTTCTGCTCCGAGC 62.883 60.000 13.81 13.81 39.40 5.03
2975 3553 1.926561 TCATCGAGTTCCAGCATTCG 58.073 50.000 0.00 0.00 34.56 3.34
3016 3594 2.357760 GAACACCTTGCGGGCGTA 60.358 61.111 0.00 0.00 39.10 4.42
3061 3639 3.979911 ACATATCAACCAGGCCATTCAA 58.020 40.909 5.01 0.00 0.00 2.69
3087 3665 1.194495 GTGGTTCTTCCGTATACGCG 58.806 55.000 19.86 3.53 39.52 6.01
3101 3679 2.546645 TACGCGTCCGGTCCATGAAC 62.547 60.000 18.63 0.00 39.22 3.18
3121 3699 0.914644 TCATGAGCCTTCCTCCCTTG 59.085 55.000 0.00 0.00 39.98 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.967987 GAGATCAAGGAGGCTAAACCCTA 59.032 47.826 0.00 0.00 40.58 3.53
2 3 2.774809 GAGATCAAGGAGGCTAAACCCT 59.225 50.000 0.00 0.00 40.58 4.34
3 4 2.483889 CGAGATCAAGGAGGCTAAACCC 60.484 54.545 0.00 0.00 40.58 4.11
5 6 3.190874 CACGAGATCAAGGAGGCTAAAC 58.809 50.000 0.00 0.00 0.00 2.01
6 7 2.168521 CCACGAGATCAAGGAGGCTAAA 59.831 50.000 0.00 0.00 0.00 1.85
7 8 1.757118 CCACGAGATCAAGGAGGCTAA 59.243 52.381 0.00 0.00 0.00 3.09
8 9 1.342076 ACCACGAGATCAAGGAGGCTA 60.342 52.381 0.00 0.00 0.00 3.93
9 10 0.616111 ACCACGAGATCAAGGAGGCT 60.616 55.000 0.00 0.00 0.00 4.58
10 11 1.112113 TACCACGAGATCAAGGAGGC 58.888 55.000 0.00 0.00 0.00 4.70
11 12 2.100197 TGTACCACGAGATCAAGGAGG 58.900 52.381 0.00 0.00 0.00 4.30
12 13 3.634448 AGATGTACCACGAGATCAAGGAG 59.366 47.826 0.00 0.00 0.00 3.69
13 14 3.632333 AGATGTACCACGAGATCAAGGA 58.368 45.455 0.00 0.00 0.00 3.36
14 15 4.580995 AGTAGATGTACCACGAGATCAAGG 59.419 45.833 0.00 0.00 0.00 3.61
15 16 5.529430 AGAGTAGATGTACCACGAGATCAAG 59.471 44.000 0.00 0.00 0.00 3.02
16 17 5.437946 AGAGTAGATGTACCACGAGATCAA 58.562 41.667 0.00 0.00 0.00 2.57
17 18 5.037383 AGAGTAGATGTACCACGAGATCA 57.963 43.478 0.00 0.00 0.00 2.92
18 19 5.297278 ACAAGAGTAGATGTACCACGAGATC 59.703 44.000 0.00 0.00 0.00 2.75
19 20 5.194432 ACAAGAGTAGATGTACCACGAGAT 58.806 41.667 0.00 0.00 0.00 2.75
20 21 4.586884 ACAAGAGTAGATGTACCACGAGA 58.413 43.478 0.00 0.00 0.00 4.04
21 22 4.966965 ACAAGAGTAGATGTACCACGAG 57.033 45.455 0.00 0.00 0.00 4.18
22 23 5.808042 GTACAAGAGTAGATGTACCACGA 57.192 43.478 5.05 0.00 43.80 4.35
51 52 9.154847 CGTCCTGCTTGATTAATATTGATGATA 57.845 33.333 0.00 0.00 0.00 2.15
52 53 7.663081 ACGTCCTGCTTGATTAATATTGATGAT 59.337 33.333 0.00 0.00 0.00 2.45
53 54 6.992123 ACGTCCTGCTTGATTAATATTGATGA 59.008 34.615 0.00 0.00 0.00 2.92
54 55 7.194607 ACGTCCTGCTTGATTAATATTGATG 57.805 36.000 0.00 0.00 0.00 3.07
55 56 7.604164 CCTACGTCCTGCTTGATTAATATTGAT 59.396 37.037 0.00 0.00 0.00 2.57
56 57 6.929049 CCTACGTCCTGCTTGATTAATATTGA 59.071 38.462 0.00 0.00 0.00 2.57
57 58 6.147821 CCCTACGTCCTGCTTGATTAATATTG 59.852 42.308 0.00 0.00 0.00 1.90
58 59 6.183361 ACCCTACGTCCTGCTTGATTAATATT 60.183 38.462 0.00 0.00 0.00 1.28
59 60 5.307196 ACCCTACGTCCTGCTTGATTAATAT 59.693 40.000 0.00 0.00 0.00 1.28
60 61 4.652421 ACCCTACGTCCTGCTTGATTAATA 59.348 41.667 0.00 0.00 0.00 0.98
61 62 3.454812 ACCCTACGTCCTGCTTGATTAAT 59.545 43.478 0.00 0.00 0.00 1.40
62 63 2.835764 ACCCTACGTCCTGCTTGATTAA 59.164 45.455 0.00 0.00 0.00 1.40
63 64 2.463752 ACCCTACGTCCTGCTTGATTA 58.536 47.619 0.00 0.00 0.00 1.75
64 65 1.276622 ACCCTACGTCCTGCTTGATT 58.723 50.000 0.00 0.00 0.00 2.57
65 66 1.276622 AACCCTACGTCCTGCTTGAT 58.723 50.000 0.00 0.00 0.00 2.57
66 67 1.053424 AAACCCTACGTCCTGCTTGA 58.947 50.000 0.00 0.00 0.00 3.02
67 68 1.892209 AAAACCCTACGTCCTGCTTG 58.108 50.000 0.00 0.00 0.00 4.01
68 69 2.289882 GGTAAAACCCTACGTCCTGCTT 60.290 50.000 0.00 0.00 30.04 3.91
69 70 1.277273 GGTAAAACCCTACGTCCTGCT 59.723 52.381 0.00 0.00 30.04 4.24
70 71 1.277273 AGGTAAAACCCTACGTCCTGC 59.723 52.381 0.00 0.00 39.75 4.85
71 72 2.093816 GGAGGTAAAACCCTACGTCCTG 60.094 54.545 12.88 0.00 46.43 3.86
72 73 2.182827 GGAGGTAAAACCCTACGTCCT 58.817 52.381 12.88 0.00 46.43 3.85
73 74 2.680312 GGAGGTAAAACCCTACGTCC 57.320 55.000 0.00 6.71 44.94 4.79
74 75 3.790091 GATGGAGGTAAAACCCTACGTC 58.210 50.000 0.00 0.00 42.79 4.34
75 76 3.175594 TGATGGAGGTAAAACCCTACGT 58.824 45.455 0.00 0.00 38.41 3.57
76 77 3.899052 TGATGGAGGTAAAACCCTACG 57.101 47.619 0.00 0.00 38.41 3.51
77 78 5.429130 CTCTTGATGGAGGTAAAACCCTAC 58.571 45.833 0.00 0.00 39.75 3.18
78 79 4.473559 CCTCTTGATGGAGGTAAAACCCTA 59.526 45.833 2.65 0.00 45.65 3.53
79 80 3.267031 CCTCTTGATGGAGGTAAAACCCT 59.733 47.826 2.65 0.00 45.65 4.34
80 81 3.621558 CCTCTTGATGGAGGTAAAACCC 58.378 50.000 2.65 0.00 45.65 4.11
89 90 1.626356 TTCGGGCCCTCTTGATGGAG 61.626 60.000 22.43 0.00 0.00 3.86
90 91 1.615124 TTCGGGCCCTCTTGATGGA 60.615 57.895 22.43 3.53 0.00 3.41
91 92 1.452108 GTTCGGGCCCTCTTGATGG 60.452 63.158 22.43 0.54 0.00 3.51
92 93 1.452108 GGTTCGGGCCCTCTTGATG 60.452 63.158 22.43 1.43 0.00 3.07
93 94 1.616628 AGGTTCGGGCCCTCTTGAT 60.617 57.895 22.43 0.00 0.00 2.57
94 95 2.203938 AGGTTCGGGCCCTCTTGA 60.204 61.111 22.43 6.61 0.00 3.02
95 96 2.045926 CAGGTTCGGGCCCTCTTG 60.046 66.667 22.43 12.77 0.00 3.02
96 97 3.330720 CCAGGTTCGGGCCCTCTT 61.331 66.667 22.43 3.59 0.00 2.85
104 105 1.735571 CGATGTTTTACCCAGGTTCGG 59.264 52.381 0.00 0.00 0.00 4.30
105 106 2.158841 CACGATGTTTTACCCAGGTTCG 59.841 50.000 0.00 0.00 0.00 3.95
106 107 3.143728 ACACGATGTTTTACCCAGGTTC 58.856 45.455 0.00 0.00 0.00 3.62
107 108 3.217681 ACACGATGTTTTACCCAGGTT 57.782 42.857 0.00 0.00 0.00 3.50
108 109 2.943036 ACACGATGTTTTACCCAGGT 57.057 45.000 0.00 0.00 0.00 4.00
109 110 2.486592 GGAACACGATGTTTTACCCAGG 59.513 50.000 0.00 0.00 41.28 4.45
110 111 2.486592 GGGAACACGATGTTTTACCCAG 59.513 50.000 15.18 0.00 41.28 4.45
111 112 2.506444 GGGAACACGATGTTTTACCCA 58.494 47.619 15.18 0.00 41.28 4.51
112 113 1.814394 GGGGAACACGATGTTTTACCC 59.186 52.381 15.80 15.80 41.28 3.69
113 114 1.465777 CGGGGAACACGATGTTTTACC 59.534 52.381 0.00 1.15 41.28 2.85
114 115 1.135888 GCGGGGAACACGATGTTTTAC 60.136 52.381 0.00 0.00 41.28 2.01
115 116 1.158434 GCGGGGAACACGATGTTTTA 58.842 50.000 0.00 0.00 41.28 1.52
116 117 1.520600 GGCGGGGAACACGATGTTTT 61.521 55.000 0.00 0.00 41.28 2.43
117 118 1.969589 GGCGGGGAACACGATGTTT 60.970 57.895 0.00 0.00 41.28 2.83
118 119 2.359478 GGCGGGGAACACGATGTT 60.359 61.111 0.00 3.52 44.37 2.71
119 120 3.310860 GAGGCGGGGAACACGATGT 62.311 63.158 0.00 0.00 0.00 3.06
120 121 2.511600 GAGGCGGGGAACACGATG 60.512 66.667 0.00 0.00 0.00 3.84
121 122 3.782443 GGAGGCGGGGAACACGAT 61.782 66.667 0.00 0.00 0.00 3.73
123 124 4.760047 CAGGAGGCGGGGAACACG 62.760 72.222 0.00 0.00 0.00 4.49
124 125 1.833787 TAACAGGAGGCGGGGAACAC 61.834 60.000 0.00 0.00 0.00 3.32
125 126 1.536907 TAACAGGAGGCGGGGAACA 60.537 57.895 0.00 0.00 0.00 3.18
126 127 1.078637 GTAACAGGAGGCGGGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
127 128 2.295602 GGTAACAGGAGGCGGGGAA 61.296 63.158 0.00 0.00 0.00 3.97
128 129 2.686106 GGTAACAGGAGGCGGGGA 60.686 66.667 0.00 0.00 0.00 4.81
129 130 3.006728 TGGTAACAGGAGGCGGGG 61.007 66.667 0.00 0.00 46.17 5.73
144 145 1.065928 GTGCGTCTAGACCGGATGG 59.934 63.158 17.23 3.19 42.84 3.51
145 146 0.248661 CTGTGCGTCTAGACCGGATG 60.249 60.000 17.23 3.91 0.00 3.51
146 147 0.680280 ACTGTGCGTCTAGACCGGAT 60.680 55.000 17.23 0.00 0.00 4.18
147 148 0.892358 AACTGTGCGTCTAGACCGGA 60.892 55.000 17.23 10.58 0.00 5.14
148 149 0.456312 GAACTGTGCGTCTAGACCGG 60.456 60.000 17.23 10.59 0.00 5.28
149 150 0.793478 CGAACTGTGCGTCTAGACCG 60.793 60.000 17.23 12.85 0.00 4.79
150 151 0.456312 CCGAACTGTGCGTCTAGACC 60.456 60.000 17.23 10.38 0.00 3.85
151 152 0.456312 CCCGAACTGTGCGTCTAGAC 60.456 60.000 13.18 13.18 0.00 2.59
152 153 0.607217 TCCCGAACTGTGCGTCTAGA 60.607 55.000 7.51 0.00 0.00 2.43
153 154 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
154 155 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
155 156 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
156 157 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
157 158 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
159 160 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
168 169 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
169 170 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
170 171 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
171 172 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
172 173 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
173 174 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
174 175 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
175 176 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
176 177 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
181 182 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
182 183 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
183 184 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
184 185 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
185 186 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
186 187 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
192 193 2.798847 GAGTAGTGTCGGTGTCAAAACC 59.201 50.000 0.00 0.00 36.82 3.27
193 194 3.450578 TGAGTAGTGTCGGTGTCAAAAC 58.549 45.455 0.00 0.00 0.00 2.43
194 195 3.804786 TGAGTAGTGTCGGTGTCAAAA 57.195 42.857 0.00 0.00 0.00 2.44
195 196 4.082408 CCTATGAGTAGTGTCGGTGTCAAA 60.082 45.833 0.00 0.00 0.00 2.69
196 197 3.442625 CCTATGAGTAGTGTCGGTGTCAA 59.557 47.826 0.00 0.00 0.00 3.18
197 198 3.014623 CCTATGAGTAGTGTCGGTGTCA 58.985 50.000 0.00 0.00 0.00 3.58
198 199 3.276857 TCCTATGAGTAGTGTCGGTGTC 58.723 50.000 0.00 0.00 0.00 3.67
199 200 3.361281 TCCTATGAGTAGTGTCGGTGT 57.639 47.619 0.00 0.00 0.00 4.16
200 201 4.920640 AATCCTATGAGTAGTGTCGGTG 57.079 45.455 0.00 0.00 0.00 4.94
201 202 4.954202 TCAAATCCTATGAGTAGTGTCGGT 59.046 41.667 0.00 0.00 0.00 4.69
202 203 5.299531 TCTCAAATCCTATGAGTAGTGTCGG 59.700 44.000 3.72 0.00 43.77 4.79
203 204 6.378710 TCTCAAATCCTATGAGTAGTGTCG 57.621 41.667 3.72 0.00 43.77 4.35
204 205 8.851145 TGTATCTCAAATCCTATGAGTAGTGTC 58.149 37.037 3.72 0.00 43.77 3.67
205 206 8.768501 TGTATCTCAAATCCTATGAGTAGTGT 57.231 34.615 3.72 0.00 43.77 3.55
206 207 9.636879 CATGTATCTCAAATCCTATGAGTAGTG 57.363 37.037 3.72 0.00 43.77 2.74
207 208 9.373450 ACATGTATCTCAAATCCTATGAGTAGT 57.627 33.333 0.00 0.00 43.77 2.73
208 209 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
209 210 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
210 211 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
211 212 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
212 213 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
213 214 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
223 224 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
224 225 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
225 226 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
226 227 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
227 228 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
228 229 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
229 230 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
230 231 9.118300 GAAATCTTGTAGGAAATGAGATGACAT 57.882 33.333 0.00 0.00 0.00 3.06
231 232 8.324306 AGAAATCTTGTAGGAAATGAGATGACA 58.676 33.333 0.00 0.00 0.00 3.58
232 233 8.729805 AGAAATCTTGTAGGAAATGAGATGAC 57.270 34.615 0.00 0.00 0.00 3.06
236 237 9.838339 GGAATAGAAATCTTGTAGGAAATGAGA 57.162 33.333 0.00 0.00 0.00 3.27
237 238 9.844257 AGGAATAGAAATCTTGTAGGAAATGAG 57.156 33.333 0.00 0.00 0.00 2.90
267 268 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
268 269 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
269 270 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
270 271 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
271 272 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
272 273 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
273 274 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
274 275 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
275 276 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
276 277 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
277 278 7.283329 AGTATAAGGCCTCTTTTGGTTCATAG 58.717 38.462 5.23 0.00 34.59 2.23
278 279 7.208064 AGTATAAGGCCTCTTTTGGTTCATA 57.792 36.000 5.23 0.00 34.59 2.15
279 280 6.079712 AGTATAAGGCCTCTTTTGGTTCAT 57.920 37.500 5.23 0.00 34.59 2.57
280 281 5.514500 AGTATAAGGCCTCTTTTGGTTCA 57.486 39.130 5.23 0.00 34.59 3.18
281 282 7.933215 TTTAGTATAAGGCCTCTTTTGGTTC 57.067 36.000 5.23 0.00 34.59 3.62
282 283 8.715190 TTTTTAGTATAAGGCCTCTTTTGGTT 57.285 30.769 5.23 0.00 34.59 3.67
312 313 9.807921 TCCAATAGTAAATTTTCTTTCTGACCT 57.192 29.630 2.43 0.00 0.00 3.85
320 321 9.533831 ACCATGTCTCCAATAGTAAATTTTCTT 57.466 29.630 2.43 0.00 0.00 2.52
321 322 9.178758 GACCATGTCTCCAATAGTAAATTTTCT 57.821 33.333 0.00 0.00 0.00 2.52
322 323 9.178758 AGACCATGTCTCCAATAGTAAATTTTC 57.821 33.333 0.00 0.00 38.71 2.29
334 335 8.816894 GGATCTATAAATAGACCATGTCTCCAA 58.183 37.037 0.00 0.00 42.40 3.53
335 336 7.955750 TGGATCTATAAATAGACCATGTCTCCA 59.044 37.037 10.24 10.24 42.40 3.86
336 337 8.367660 TGGATCTATAAATAGACCATGTCTCC 57.632 38.462 13.06 9.98 42.40 3.71
337 338 9.646427 GTTGGATCTATAAATAGACCATGTCTC 57.354 37.037 15.75 4.90 42.40 3.36
338 339 8.598041 GGTTGGATCTATAAATAGACCATGTCT 58.402 37.037 15.75 1.94 45.54 3.41
339 340 8.375506 TGGTTGGATCTATAAATAGACCATGTC 58.624 37.037 15.75 5.91 41.77 3.06
340 341 8.275187 TGGTTGGATCTATAAATAGACCATGT 57.725 34.615 15.75 0.00 41.77 3.21
341 342 9.170734 CATGGTTGGATCTATAAATAGACCATG 57.829 37.037 21.39 21.39 44.79 3.66
342 343 8.894592 ACATGGTTGGATCTATAAATAGACCAT 58.105 33.333 15.75 13.80 40.61 3.55
343 344 8.275187 ACATGGTTGGATCTATAAATAGACCA 57.725 34.615 13.06 13.06 41.77 4.02
346 347 9.944376 GCTTACATGGTTGGATCTATAAATAGA 57.056 33.333 0.00 2.28 43.00 1.98
347 348 9.725019 TGCTTACATGGTTGGATCTATAAATAG 57.275 33.333 0.00 0.00 0.00 1.73
350 351 9.502091 GTATGCTTACATGGTTGGATCTATAAA 57.498 33.333 4.94 0.00 37.04 1.40
351 352 8.880244 AGTATGCTTACATGGTTGGATCTATAA 58.120 33.333 11.89 0.00 37.04 0.98
352 353 8.435931 AGTATGCTTACATGGTTGGATCTATA 57.564 34.615 11.89 0.00 37.04 1.31
353 354 7.321717 AGTATGCTTACATGGTTGGATCTAT 57.678 36.000 11.89 0.00 37.04 1.98
354 355 6.747414 AGTATGCTTACATGGTTGGATCTA 57.253 37.500 11.89 0.00 37.04 1.98
355 356 5.636903 AGTATGCTTACATGGTTGGATCT 57.363 39.130 11.89 0.00 37.04 2.75
356 357 7.880195 AGATAAGTATGCTTACATGGTTGGATC 59.120 37.037 5.32 0.00 39.70 3.36
357 358 7.749666 AGATAAGTATGCTTACATGGTTGGAT 58.250 34.615 5.32 0.00 39.70 3.41
358 359 7.136822 AGATAAGTATGCTTACATGGTTGGA 57.863 36.000 5.32 0.00 39.70 3.53
359 360 6.992123 TGAGATAAGTATGCTTACATGGTTGG 59.008 38.462 5.32 0.00 39.70 3.77
360 361 8.613060 ATGAGATAAGTATGCTTACATGGTTG 57.387 34.615 5.32 0.00 39.70 3.77
370 371 9.463902 ACGGTAGTATAATGAGATAAGTATGCT 57.536 33.333 0.00 0.00 0.00 3.79
375 376 9.804977 AGGTTACGGTAGTATAATGAGATAAGT 57.195 33.333 0.00 0.00 32.12 2.24
380 381 9.807649 GAAAAAGGTTACGGTAGTATAATGAGA 57.192 33.333 0.00 0.00 32.12 3.27
381 382 9.038803 GGAAAAAGGTTACGGTAGTATAATGAG 57.961 37.037 0.00 0.00 32.12 2.90
382 383 8.538701 TGGAAAAAGGTTACGGTAGTATAATGA 58.461 33.333 0.00 0.00 32.12 2.57
383 384 8.721019 TGGAAAAAGGTTACGGTAGTATAATG 57.279 34.615 0.00 0.00 32.12 1.90
384 385 9.166173 GTTGGAAAAAGGTTACGGTAGTATAAT 57.834 33.333 0.00 0.00 32.12 1.28
385 386 7.606073 GGTTGGAAAAAGGTTACGGTAGTATAA 59.394 37.037 0.00 0.00 32.12 0.98
386 387 7.038373 AGGTTGGAAAAAGGTTACGGTAGTATA 60.038 37.037 0.00 0.00 32.12 1.47
387 388 5.939883 GGTTGGAAAAAGGTTACGGTAGTAT 59.060 40.000 0.00 0.00 32.12 2.12
388 389 5.071653 AGGTTGGAAAAAGGTTACGGTAGTA 59.928 40.000 0.00 0.00 0.00 1.82
389 390 4.136796 GGTTGGAAAAAGGTTACGGTAGT 58.863 43.478 0.00 0.00 0.00 2.73
390 391 4.392047 AGGTTGGAAAAAGGTTACGGTAG 58.608 43.478 0.00 0.00 0.00 3.18
391 392 4.436113 AGGTTGGAAAAAGGTTACGGTA 57.564 40.909 0.00 0.00 0.00 4.02
392 393 3.301794 AGGTTGGAAAAAGGTTACGGT 57.698 42.857 0.00 0.00 0.00 4.83
393 394 4.659111 AAAGGTTGGAAAAAGGTTACGG 57.341 40.909 0.00 0.00 0.00 4.02
418 419 5.422214 TGGAAAAAGGTTACCTGCAAAAA 57.578 34.783 3.99 0.00 32.13 1.94
419 420 5.179533 GTTGGAAAAAGGTTACCTGCAAAA 58.820 37.500 3.99 0.00 32.13 2.44
420 421 4.383226 GGTTGGAAAAAGGTTACCTGCAAA 60.383 41.667 3.99 0.00 32.13 3.68
421 422 3.133183 GGTTGGAAAAAGGTTACCTGCAA 59.867 43.478 3.99 0.00 32.13 4.08
422 423 2.696187 GGTTGGAAAAAGGTTACCTGCA 59.304 45.455 3.99 0.00 32.13 4.41
423 424 2.963101 AGGTTGGAAAAAGGTTACCTGC 59.037 45.455 3.99 0.00 34.84 4.85
424 425 6.718522 TTTAGGTTGGAAAAAGGTTACCTG 57.281 37.500 3.99 0.00 36.70 4.00
425 426 6.842280 ACATTTAGGTTGGAAAAAGGTTACCT 59.158 34.615 0.00 0.00 39.25 3.08
426 427 7.014905 AGACATTTAGGTTGGAAAAAGGTTACC 59.985 37.037 0.00 0.00 28.32 2.85
452 453 7.464045 CGAGTAATCGCATGTTGTCTGATTTTA 60.464 37.037 0.00 0.00 32.07 1.52
472 473 4.449405 TGTTCACGATTTTGATGCGAGTAA 59.551 37.500 0.00 0.00 0.00 2.24
473 474 3.991121 TGTTCACGATTTTGATGCGAGTA 59.009 39.130 0.00 0.00 0.00 2.59
528 529 0.107410 ACCTGCACGAGTCAAAACCA 60.107 50.000 0.00 0.00 0.00 3.67
542 543 1.521681 GTGCGATAGACCCACCTGC 60.522 63.158 0.00 0.00 39.76 4.85
546 547 2.000447 GAAACTGTGCGATAGACCCAC 59.000 52.381 0.00 0.00 39.76 4.61
578 583 2.061028 CAAAATGTCTTCGGCAAAGCC 58.939 47.619 0.00 0.00 46.75 4.35
602 610 3.343788 GAGGCTGGTCACGTCCTCG 62.344 68.421 0.00 0.00 43.34 4.63
643 652 3.686098 TTGGTTGGTTGGCTGGCCA 62.686 57.895 10.55 10.55 45.63 5.36
644 653 2.841988 TTGGTTGGTTGGCTGGCC 60.842 61.111 4.43 4.43 0.00 5.36
646 655 1.441311 GTGTTGGTTGGTTGGCTGG 59.559 57.895 0.00 0.00 0.00 4.85
647 656 1.065600 CGTGTTGGTTGGTTGGCTG 59.934 57.895 0.00 0.00 0.00 4.85
649 658 1.226831 CACGTGTTGGTTGGTTGGC 60.227 57.895 7.58 0.00 0.00 4.52
661 670 2.237751 GCACTCGAACAGCACGTGT 61.238 57.895 18.38 0.68 43.24 4.49
701 718 3.072211 TGAGGAGTACAGTGTACAGACG 58.928 50.000 30.09 0.00 0.00 4.18
702 719 4.321082 GGTTGAGGAGTACAGTGTACAGAC 60.321 50.000 30.09 20.32 0.00 3.51
710 727 1.645710 CCCAGGTTGAGGAGTACAGT 58.354 55.000 0.00 0.00 0.00 3.55
711 728 0.905357 CCCCAGGTTGAGGAGTACAG 59.095 60.000 0.00 0.00 0.00 2.74
712 729 0.546747 CCCCCAGGTTGAGGAGTACA 60.547 60.000 0.00 0.00 0.00 2.90
713 730 1.911702 GCCCCCAGGTTGAGGAGTAC 61.912 65.000 0.00 0.00 34.57 2.73
714 731 1.615424 GCCCCCAGGTTGAGGAGTA 60.615 63.158 0.00 0.00 34.57 2.59
715 732 2.936032 GCCCCCAGGTTGAGGAGT 60.936 66.667 0.00 0.00 34.57 3.85
716 733 4.101448 CGCCCCCAGGTTGAGGAG 62.101 72.222 0.00 0.00 34.57 3.69
719 736 4.410400 GTCCGCCCCCAGGTTGAG 62.410 72.222 0.00 0.00 34.57 3.02
746 763 1.533033 CCCCCGGGTTGAGCTTTTT 60.533 57.895 21.85 0.00 0.00 1.94
747 764 2.117423 CCCCCGGGTTGAGCTTTT 59.883 61.111 21.85 0.00 0.00 2.27
748 765 4.678743 GCCCCCGGGTTGAGCTTT 62.679 66.667 21.85 0.00 37.65 3.51
766 783 1.215647 CTGCTACAGACCGTGGTCC 59.784 63.158 15.28 0.65 45.59 4.46
767 784 1.446272 GCTGCTACAGACCGTGGTC 60.446 63.158 11.14 11.14 44.86 4.02
778 795 1.019805 GTGTTTCGGGGAGCTGCTAC 61.020 60.000 2.38 2.38 0.00 3.58
779 796 1.295423 GTGTTTCGGGGAGCTGCTA 59.705 57.895 0.15 0.00 0.00 3.49
783 800 2.852075 TGGGTGTTTCGGGGAGCT 60.852 61.111 0.00 0.00 0.00 4.09
823 844 1.588667 CGTGCAGTGGTTTTGTGCC 60.589 57.895 0.00 0.00 36.31 5.01
826 847 1.138671 GTGCGTGCAGTGGTTTTGT 59.861 52.632 0.00 0.00 0.00 2.83
945 966 4.885270 TGCGGTGGGGTGGTGTTG 62.885 66.667 0.00 0.00 0.00 3.33
946 967 4.887190 GTGCGGTGGGGTGGTGTT 62.887 66.667 0.00 0.00 0.00 3.32
962 983 1.612442 ATGGGTGAGTAGTGGCGGT 60.612 57.895 0.00 0.00 0.00 5.68
983 1004 0.811616 CATTGTGGCTAGCTCCCGAC 60.812 60.000 15.72 4.74 0.00 4.79
1201 1234 4.530857 GATGTCCTCCACGGGCCG 62.531 72.222 27.06 27.06 36.18 6.13
1314 1347 0.670546 CCACCAGCACCACGAAGTAG 60.671 60.000 0.00 0.00 41.61 2.57
1574 1607 3.290308 TCGTTCAAGAAGCTCTGACTC 57.710 47.619 0.00 0.00 0.00 3.36
1575 1608 3.735237 TTCGTTCAAGAAGCTCTGACT 57.265 42.857 0.00 0.00 0.00 3.41
1577 1610 4.240888 CAGATTCGTTCAAGAAGCTCTGA 58.759 43.478 0.00 0.00 43.98 3.27
1579 1612 4.264460 ACAGATTCGTTCAAGAAGCTCT 57.736 40.909 0.00 0.00 43.98 4.09
1595 1628 4.866508 TTGTACTCCTCGTTCAACAGAT 57.133 40.909 0.00 0.00 29.39 2.90
1601 1634 4.950475 AGATGAGATTGTACTCCTCGTTCA 59.050 41.667 0.00 0.00 36.91 3.18
1605 1638 4.336713 TGTCAGATGAGATTGTACTCCTCG 59.663 45.833 0.00 0.00 36.91 4.63
1606 1639 5.843673 TGTCAGATGAGATTGTACTCCTC 57.156 43.478 0.00 0.00 36.22 3.71
1608 1641 4.749099 GCATGTCAGATGAGATTGTACTCC 59.251 45.833 0.00 0.00 36.22 3.85
1609 1642 5.462729 CAGCATGTCAGATGAGATTGTACTC 59.537 44.000 0.00 0.00 37.42 2.59
1610 1643 5.128335 TCAGCATGTCAGATGAGATTGTACT 59.872 40.000 0.00 0.00 37.40 2.73
1624 1678 1.201414 CTGCAATTGCTCAGCATGTCA 59.799 47.619 29.37 5.83 38.76 3.58
1635 1689 2.409870 CCTCGGGTCCTGCAATTGC 61.410 63.158 23.69 23.69 42.50 3.56
1680 1734 0.317160 CCTGGAAGCTCGTGTACACA 59.683 55.000 24.98 11.60 0.00 3.72
1881 1935 2.023741 CGCTTGCGCATCATGTCC 59.976 61.111 12.75 0.00 35.30 4.02
2157 2211 1.985116 GACCTTCCTGGGCTCGTCT 60.985 63.158 0.00 0.00 41.93 4.18
2177 2231 4.133078 CCTATCAAAGATCCAGCTGAACC 58.867 47.826 17.39 3.03 0.00 3.62
2196 2250 3.853207 ACACTAGACAACCACTTCCCTA 58.147 45.455 0.00 0.00 0.00 3.53
2221 2286 5.879777 CACTATCTCAGTCTCAGAAGTCAGA 59.120 44.000 0.00 0.00 34.26 3.27
2247 2315 3.450457 AGAAGGACAGTGACAGGATCATC 59.550 47.826 0.00 0.00 40.28 2.92
2258 2326 4.396166 ACAAAAGAACACAGAAGGACAGTG 59.604 41.667 0.00 0.00 40.92 3.66
2260 2328 5.567138 AACAAAAGAACACAGAAGGACAG 57.433 39.130 0.00 0.00 0.00 3.51
2265 2333 7.756558 AGAGAGAAAACAAAAGAACACAGAAG 58.243 34.615 0.00 0.00 0.00 2.85
2278 2346 6.454795 ACAACTTTGCAAAGAGAGAAAACAA 58.545 32.000 38.78 2.25 39.31 2.83
2283 2351 7.807977 ATAGAACAACTTTGCAAAGAGAGAA 57.192 32.000 38.78 20.27 39.31 2.87
2284 2352 8.150945 ACTATAGAACAACTTTGCAAAGAGAGA 58.849 33.333 38.78 19.74 39.31 3.10
2311 2379 9.883142 AGTACATTGTTTCCAAATTCAAAAGAA 57.117 25.926 0.00 0.00 33.44 2.52
2378 2956 5.043903 AGATAGTAGTACATTGTTGCAGCG 58.956 41.667 2.52 0.00 0.00 5.18
2381 2959 5.729510 TGCAGATAGTAGTACATTGTTGCA 58.270 37.500 2.52 8.83 35.70 4.08
2395 2973 2.224079 CACAAAGTGCGTTGCAGATAGT 59.776 45.455 0.00 0.00 40.08 2.12
2407 2985 3.066621 TGACATTCCTGAACACAAAGTGC 59.933 43.478 0.00 0.00 36.98 4.40
2552 3130 4.365287 GCATCAACCAATGACGCG 57.635 55.556 3.53 3.53 37.52 6.01
2585 3163 3.529533 GGTGTCAGATGAGATCAACCAG 58.470 50.000 0.00 0.00 0.00 4.00
2636 3214 0.459934 CTCTTCTCGGAGCTTGCAGG 60.460 60.000 0.00 0.00 0.00 4.85
2729 3307 3.148279 GTCGATCTCCTGGGCCGT 61.148 66.667 0.00 0.00 0.00 5.68
2738 3316 1.519455 CGGTTGCCTGGTCGATCTC 60.519 63.158 0.00 0.00 0.00 2.75
2777 3355 1.517694 TTTCGGCGCGTATGGAGTC 60.518 57.895 8.43 0.00 0.00 3.36
2787 3365 0.843872 GTTTTCAACAGTTTCGGCGC 59.156 50.000 0.00 0.00 0.00 6.53
2806 3384 0.991920 TGTGGAAGAAGGCCTAAGGG 59.008 55.000 5.16 0.00 0.00 3.95
2892 3470 1.815003 GCTGTTTTCCCAGATGGAGTG 59.185 52.381 0.00 0.00 46.24 3.51
2913 3491 1.734137 GGAGCGAAGAGGCGATACA 59.266 57.895 0.00 0.00 38.18 2.29
2948 3526 0.661780 GGAACTCGATGATCTCCGCG 60.662 60.000 0.00 0.00 0.00 6.46
2975 3553 1.141053 AGCATCCAACGGAGGAATACC 59.859 52.381 0.00 0.00 41.92 2.73
3101 3679 1.134159 CAAGGGAGGAAGGCTCATGAG 60.134 57.143 18.84 18.84 0.00 2.90
3108 3686 1.756430 CTAAAGCAAGGGAGGAAGGC 58.244 55.000 0.00 0.00 0.00 4.35
3121 3699 2.167861 CAGCTCGGGTCGCTAAAGC 61.168 63.158 0.00 0.00 35.63 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.