Multiple sequence alignment - TraesCS3A01G408400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G408400 chr3A 100.000 3309 0 0 1 3309 653329943 653333251 0.000000e+00 6111.0
1 TraesCS3A01G408400 chr3A 90.071 141 12 2 431 570 57866534 57866395 7.290000e-42 182.0
2 TraesCS3A01G408400 chr3A 92.857 112 7 1 564 675 16682903 16682793 9.500000e-36 161.0
3 TraesCS3A01G408400 chr3D 92.784 1857 69 26 779 2603 517487962 517489785 0.000000e+00 2627.0
4 TraesCS3A01G408400 chr3D 90.414 459 17 7 2872 3309 517489981 517490433 2.210000e-161 579.0
5 TraesCS3A01G408400 chr3D 87.786 262 22 8 171 431 517487318 517487570 6.940000e-77 298.0
6 TraesCS3A01G408400 chr3D 91.429 140 11 1 431 570 46257379 46257241 1.210000e-44 191.0
7 TraesCS3A01G408400 chr3D 94.444 72 3 1 431 501 517487601 517487672 3.490000e-20 110.0
8 TraesCS3A01G408400 chr3B 92.499 1853 86 21 779 2597 681210259 681212092 0.000000e+00 2603.0
9 TraesCS3A01G408400 chr3B 85.652 460 30 14 2872 3309 681494007 681494452 5.040000e-123 451.0
10 TraesCS3A01G408400 chr3B 95.745 47 2 0 682 728 681210154 681210200 3.540000e-10 76.8
11 TraesCS3A01G408400 chr2A 76.114 561 97 29 1762 2293 580385010 580385562 3.280000e-65 259.0
12 TraesCS3A01G408400 chr2A 91.358 81 7 0 2613 2693 706381814 706381894 9.710000e-21 111.0
13 TraesCS3A01G408400 chr2D 76.600 500 85 25 1762 2236 413353626 413354118 2.550000e-61 246.0
14 TraesCS3A01G408400 chr2D 92.593 81 6 0 2613 2693 29615810 29615890 2.090000e-22 117.0
15 TraesCS3A01G408400 chr2B 76.200 500 87 25 1762 2236 486843739 486844231 5.520000e-58 235.0
16 TraesCS3A01G408400 chr6A 78.342 374 51 19 2913 3267 70434845 70434483 7.190000e-52 215.0
17 TraesCS3A01G408400 chr6A 96.396 111 4 0 565 675 143450420 143450530 2.030000e-42 183.0
18 TraesCS3A01G408400 chr6A 92.793 111 8 0 569 679 262946723 262946613 9.500000e-36 161.0
19 TraesCS3A01G408400 chr6D 78.075 374 52 19 2913 3267 55938562 55938200 3.350000e-50 209.0
20 TraesCS3A01G408400 chr7A 99.074 108 1 0 568 675 612540097 612539990 9.370000e-46 195.0
21 TraesCS3A01G408400 chr7A 94.393 107 6 0 569 675 68762898 68762792 7.350000e-37 165.0
22 TraesCS3A01G408400 chr7A 93.578 109 7 0 568 676 264847822 264847930 2.640000e-36 163.0
23 TraesCS3A01G408400 chr1B 97.196 107 3 0 569 675 530730254 530730148 7.290000e-42 182.0
24 TraesCS3A01G408400 chrUn 96.296 108 4 0 568 675 454753227 454753334 9.440000e-41 178.0
25 TraesCS3A01G408400 chrUn 90.476 84 8 0 2613 2696 26086840 26086923 9.710000e-21 111.0
26 TraesCS3A01G408400 chrUn 90.476 84 8 0 2613 2696 322495001 322495084 9.710000e-21 111.0
27 TraesCS3A01G408400 chrUn 90.476 84 8 0 2613 2696 346765721 346765804 9.710000e-21 111.0
28 TraesCS3A01G408400 chr1A 95.455 110 5 0 566 675 578926180 578926289 3.390000e-40 176.0
29 TraesCS3A01G408400 chr1A 87.654 81 10 0 2613 2693 544144550 544144470 9.780000e-16 95.3
30 TraesCS3A01G408400 chr6B 92.593 81 6 0 2613 2693 23766446 23766366 2.090000e-22 117.0
31 TraesCS3A01G408400 chr5D 91.358 81 7 0 2613 2693 299595034 299595114 9.710000e-21 111.0
32 TraesCS3A01G408400 chr5B 88.889 81 9 0 2613 2693 572363704 572363784 2.100000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G408400 chr3A 653329943 653333251 3308 False 6111.0 6111 100.000 1 3309 1 chr3A.!!$F1 3308
1 TraesCS3A01G408400 chr3D 517487318 517490433 3115 False 903.5 2627 91.357 171 3309 4 chr3D.!!$F1 3138
2 TraesCS3A01G408400 chr3B 681210154 681212092 1938 False 1339.9 2603 94.122 682 2597 2 chr3B.!!$F2 1915
3 TraesCS3A01G408400 chr2A 580385010 580385562 552 False 259.0 259 76.114 1762 2293 1 chr2A.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 341 0.036732 ATTGTCCATCTGGTGCACGT 59.963 50.0 11.45 0.0 36.34 4.49 F
848 1019 0.037697 ACCTGCACAGATTAACGCGA 60.038 50.0 15.93 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2125 2359 0.602905 CGTCGCCCTTGAGGAAGTTT 60.603 55.0 0.00 0.0 38.24 2.66 R
2743 2994 0.107703 TGACCGGATGAGCCATTGAC 60.108 55.0 9.46 0.0 35.94 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.877137 AAGCTTGTTTTTGAAAGTTGTTTAAAG 57.123 25.926 0.00 0.00 0.00 1.85
28 29 8.015087 AGCTTGTTTTTGAAAGTTGTTTAAAGC 58.985 29.630 0.00 0.00 35.26 3.51
29 30 7.006122 GCTTGTTTTTGAAAGTTGTTTAAAGCG 59.994 33.333 0.00 0.00 0.00 4.68
30 31 6.300356 TGTTTTTGAAAGTTGTTTAAAGCGC 58.700 32.000 0.00 0.00 0.00 5.92
31 32 5.457650 TTTTGAAAGTTGTTTAAAGCGCC 57.542 34.783 2.29 0.00 0.00 6.53
32 33 4.379339 TTGAAAGTTGTTTAAAGCGCCT 57.621 36.364 2.29 0.00 0.00 5.52
33 34 4.379339 TGAAAGTTGTTTAAAGCGCCTT 57.621 36.364 2.29 0.00 0.00 4.35
34 35 4.749976 TGAAAGTTGTTTAAAGCGCCTTT 58.250 34.783 2.29 6.93 37.46 3.11
35 36 5.172205 TGAAAGTTGTTTAAAGCGCCTTTT 58.828 33.333 2.29 0.94 35.21 2.27
36 37 5.639931 TGAAAGTTGTTTAAAGCGCCTTTTT 59.360 32.000 2.29 0.06 35.21 1.94
57 58 4.916983 TTTTCTCAGACCACCACAAATG 57.083 40.909 0.00 0.00 0.00 2.32
58 59 3.576078 TTCTCAGACCACCACAAATGT 57.424 42.857 0.00 0.00 0.00 2.71
59 60 3.576078 TCTCAGACCACCACAAATGTT 57.424 42.857 0.00 0.00 0.00 2.71
60 61 4.698201 TCTCAGACCACCACAAATGTTA 57.302 40.909 0.00 0.00 0.00 2.41
61 62 5.241403 TCTCAGACCACCACAAATGTTAT 57.759 39.130 0.00 0.00 0.00 1.89
62 63 5.630121 TCTCAGACCACCACAAATGTTATT 58.370 37.500 0.00 0.00 0.00 1.40
63 64 6.068010 TCTCAGACCACCACAAATGTTATTT 58.932 36.000 0.00 0.00 0.00 1.40
64 65 6.206634 TCTCAGACCACCACAAATGTTATTTC 59.793 38.462 0.00 0.00 0.00 2.17
65 66 6.068010 TCAGACCACCACAAATGTTATTTCT 58.932 36.000 0.00 0.00 0.00 2.52
66 67 6.549364 TCAGACCACCACAAATGTTATTTCTT 59.451 34.615 0.00 0.00 0.00 2.52
67 68 6.642131 CAGACCACCACAAATGTTATTTCTTG 59.358 38.462 0.00 0.00 0.00 3.02
68 69 6.549364 AGACCACCACAAATGTTATTTCTTGA 59.451 34.615 0.00 0.00 0.00 3.02
69 70 6.512297 ACCACCACAAATGTTATTTCTTGAC 58.488 36.000 0.00 0.00 0.00 3.18
70 71 5.925969 CCACCACAAATGTTATTTCTTGACC 59.074 40.000 0.00 0.00 0.00 4.02
71 72 6.462207 CCACCACAAATGTTATTTCTTGACCA 60.462 38.462 0.00 0.00 0.00 4.02
72 73 6.983307 CACCACAAATGTTATTTCTTGACCAA 59.017 34.615 0.00 0.00 0.00 3.67
73 74 7.656948 CACCACAAATGTTATTTCTTGACCAAT 59.343 33.333 0.00 0.00 0.00 3.16
74 75 8.210265 ACCACAAATGTTATTTCTTGACCAATT 58.790 29.630 0.00 0.00 0.00 2.32
75 76 9.054922 CCACAAATGTTATTTCTTGACCAATTT 57.945 29.630 0.00 0.00 0.00 1.82
78 79 9.796062 CAAATGTTATTTCTTGACCAATTTTCG 57.204 29.630 0.00 0.00 0.00 3.46
79 80 9.541143 AAATGTTATTTCTTGACCAATTTTCGT 57.459 25.926 0.00 0.00 0.00 3.85
81 82 9.620660 ATGTTATTTCTTGACCAATTTTCGTAC 57.379 29.630 0.00 0.00 0.00 3.67
82 83 8.622157 TGTTATTTCTTGACCAATTTTCGTACA 58.378 29.630 0.00 0.00 0.00 2.90
83 84 9.113876 GTTATTTCTTGACCAATTTTCGTACAG 57.886 33.333 0.00 0.00 0.00 2.74
84 85 6.687081 TTTCTTGACCAATTTTCGTACAGT 57.313 33.333 0.00 0.00 0.00 3.55
85 86 5.917541 TCTTGACCAATTTTCGTACAGTC 57.082 39.130 0.00 0.00 0.00 3.51
86 87 5.361427 TCTTGACCAATTTTCGTACAGTCA 58.639 37.500 0.00 0.00 0.00 3.41
87 88 5.818336 TCTTGACCAATTTTCGTACAGTCAA 59.182 36.000 0.00 0.00 39.65 3.18
88 89 6.316640 TCTTGACCAATTTTCGTACAGTCAAA 59.683 34.615 0.00 0.00 40.91 2.69
89 90 6.438259 TGACCAATTTTCGTACAGTCAAAA 57.562 33.333 0.00 0.00 30.35 2.44
90 91 6.259638 TGACCAATTTTCGTACAGTCAAAAC 58.740 36.000 0.00 0.00 30.35 2.43
91 92 6.127980 TGACCAATTTTCGTACAGTCAAAACA 60.128 34.615 0.00 0.00 30.35 2.83
92 93 6.622549 ACCAATTTTCGTACAGTCAAAACAA 58.377 32.000 0.00 0.00 0.00 2.83
93 94 6.750039 ACCAATTTTCGTACAGTCAAAACAAG 59.250 34.615 0.00 0.00 0.00 3.16
94 95 6.291585 CCAATTTTCGTACAGTCAAAACAAGC 60.292 38.462 0.00 0.00 0.00 4.01
95 96 4.948608 TTTCGTACAGTCAAAACAAGCA 57.051 36.364 0.00 0.00 0.00 3.91
96 97 3.936902 TCGTACAGTCAAAACAAGCAC 57.063 42.857 0.00 0.00 0.00 4.40
97 98 3.263261 TCGTACAGTCAAAACAAGCACA 58.737 40.909 0.00 0.00 0.00 4.57
98 99 3.062909 TCGTACAGTCAAAACAAGCACAC 59.937 43.478 0.00 0.00 0.00 3.82
99 100 3.181515 CGTACAGTCAAAACAAGCACACA 60.182 43.478 0.00 0.00 0.00 3.72
100 101 3.216147 ACAGTCAAAACAAGCACACAC 57.784 42.857 0.00 0.00 0.00 3.82
101 102 2.176369 CAGTCAAAACAAGCACACACG 58.824 47.619 0.00 0.00 0.00 4.49
102 103 1.810151 AGTCAAAACAAGCACACACGT 59.190 42.857 0.00 0.00 0.00 4.49
103 104 2.227865 AGTCAAAACAAGCACACACGTT 59.772 40.909 0.00 0.00 0.00 3.99
104 105 3.437395 AGTCAAAACAAGCACACACGTTA 59.563 39.130 0.00 0.00 0.00 3.18
105 106 3.783943 GTCAAAACAAGCACACACGTTAG 59.216 43.478 0.00 0.00 0.00 2.34
106 107 3.685272 TCAAAACAAGCACACACGTTAGA 59.315 39.130 0.00 0.00 0.00 2.10
107 108 4.154375 TCAAAACAAGCACACACGTTAGAA 59.846 37.500 0.00 0.00 0.00 2.10
108 109 4.688511 AAACAAGCACACACGTTAGAAA 57.311 36.364 0.00 0.00 0.00 2.52
109 110 3.668596 ACAAGCACACACGTTAGAAAC 57.331 42.857 0.00 0.00 0.00 2.78
110 111 2.353579 ACAAGCACACACGTTAGAAACC 59.646 45.455 0.00 0.00 0.00 3.27
111 112 2.319136 AGCACACACGTTAGAAACCA 57.681 45.000 0.00 0.00 0.00 3.67
112 113 2.634600 AGCACACACGTTAGAAACCAA 58.365 42.857 0.00 0.00 0.00 3.67
113 114 3.011119 AGCACACACGTTAGAAACCAAA 58.989 40.909 0.00 0.00 0.00 3.28
114 115 3.440872 AGCACACACGTTAGAAACCAAAA 59.559 39.130 0.00 0.00 0.00 2.44
115 116 4.082679 AGCACACACGTTAGAAACCAAAAA 60.083 37.500 0.00 0.00 0.00 1.94
143 144 9.492973 ACAGCATTTTATTTTATTTGCTTGACT 57.507 25.926 0.00 0.00 38.30 3.41
153 154 9.612066 ATTTTATTTGCTTGACTTTTTCCTTGA 57.388 25.926 0.00 0.00 0.00 3.02
154 155 9.612066 TTTTATTTGCTTGACTTTTTCCTTGAT 57.388 25.926 0.00 0.00 0.00 2.57
155 156 9.612066 TTTATTTGCTTGACTTTTTCCTTGATT 57.388 25.926 0.00 0.00 0.00 2.57
156 157 6.907206 TTTGCTTGACTTTTTCCTTGATTG 57.093 33.333 0.00 0.00 0.00 2.67
157 158 5.596836 TGCTTGACTTTTTCCTTGATTGT 57.403 34.783 0.00 0.00 0.00 2.71
158 159 6.707440 TGCTTGACTTTTTCCTTGATTGTA 57.293 33.333 0.00 0.00 0.00 2.41
159 160 7.288810 TGCTTGACTTTTTCCTTGATTGTAT 57.711 32.000 0.00 0.00 0.00 2.29
160 161 7.725251 TGCTTGACTTTTTCCTTGATTGTATT 58.275 30.769 0.00 0.00 0.00 1.89
161 162 7.652909 TGCTTGACTTTTTCCTTGATTGTATTG 59.347 33.333 0.00 0.00 0.00 1.90
162 163 7.653311 GCTTGACTTTTTCCTTGATTGTATTGT 59.347 33.333 0.00 0.00 0.00 2.71
163 164 9.185192 CTTGACTTTTTCCTTGATTGTATTGTC 57.815 33.333 0.00 0.00 0.00 3.18
164 165 7.657336 TGACTTTTTCCTTGATTGTATTGTCC 58.343 34.615 0.00 0.00 0.00 4.02
165 166 7.286546 TGACTTTTTCCTTGATTGTATTGTCCA 59.713 33.333 0.00 0.00 0.00 4.02
166 167 8.193953 ACTTTTTCCTTGATTGTATTGTCCAT 57.806 30.769 0.00 0.00 0.00 3.41
167 168 8.306761 ACTTTTTCCTTGATTGTATTGTCCATC 58.693 33.333 0.00 0.00 0.00 3.51
168 169 7.773489 TTTTCCTTGATTGTATTGTCCATCA 57.227 32.000 0.00 0.00 0.00 3.07
169 170 7.773489 TTTCCTTGATTGTATTGTCCATCAA 57.227 32.000 0.00 0.00 40.53 2.57
220 221 3.126001 TCTCAGACCACCACAAATGTC 57.874 47.619 0.00 0.00 0.00 3.06
221 222 2.437651 TCTCAGACCACCACAAATGTCA 59.562 45.455 0.00 0.00 0.00 3.58
228 229 6.016360 CAGACCACCACAAATGTCATTTCTTA 60.016 38.462 7.87 0.00 0.00 2.10
230 231 6.748132 ACCACCACAAATGTCATTTCTTAAG 58.252 36.000 7.87 0.00 0.00 1.85
242 243 6.363088 TGTCATTTCTTAAGCAATTTTCGCAG 59.637 34.615 0.00 0.00 0.00 5.18
256 257 0.581529 TCGCAGAGTCAAAACAAGCG 59.418 50.000 0.00 0.00 40.88 4.68
273 274 5.358922 ACAAGCGTACAAGTTAGTTACCAA 58.641 37.500 0.00 0.00 0.00 3.67
330 331 8.599624 ATTGTCCTTGATTTTATTGTCCATCT 57.400 30.769 0.00 0.00 0.00 2.90
338 340 2.022764 TATTGTCCATCTGGTGCACG 57.977 50.000 11.45 0.00 36.34 5.34
339 341 0.036732 ATTGTCCATCTGGTGCACGT 59.963 50.000 11.45 0.00 36.34 4.49
405 407 6.747414 ATATTGCACACTAAGAGGATGGTA 57.253 37.500 0.00 0.00 0.00 3.25
414 416 6.324254 ACACTAAGAGGATGGTATGTAAGGTC 59.676 42.308 0.00 0.00 0.00 3.85
418 420 4.341520 AGAGGATGGTATGTAAGGTCGAAC 59.658 45.833 0.00 0.00 0.00 3.95
431 433 6.533723 TGTAAGGTCGAACTATATTGCACAAG 59.466 38.462 1.80 0.00 0.00 3.16
432 434 5.086104 AGGTCGAACTATATTGCACAAGT 57.914 39.130 0.00 0.00 0.00 3.16
468 502 4.074970 CAAACTAAGCATTGACCTCCTGT 58.925 43.478 0.00 0.00 0.00 4.00
493 527 0.179045 ATACAATCGCACCTCTGGCC 60.179 55.000 0.00 0.00 0.00 5.36
507 654 4.019174 CCTCTGGCCAAAGTACATGATTT 58.981 43.478 7.01 0.00 0.00 2.17
513 660 5.048083 TGGCCAAAGTACATGATTTTCAGAC 60.048 40.000 0.61 0.00 0.00 3.51
528 675 5.356882 TTTCAGACCAATTAGTCGCTTTG 57.643 39.130 0.00 0.00 41.83 2.77
540 687 2.859981 CGCTTTGGGCAGTGGCTTT 61.860 57.895 17.16 0.00 41.91 3.51
541 688 1.523154 CGCTTTGGGCAGTGGCTTTA 61.523 55.000 17.16 0.67 41.91 1.85
547 694 1.075374 TGGGCAGTGGCTTTACATTCT 59.925 47.619 17.16 0.00 40.87 2.40
550 697 2.421424 GGCAGTGGCTTTACATTCTCTG 59.579 50.000 9.90 0.00 40.87 3.35
551 698 3.077359 GCAGTGGCTTTACATTCTCTGT 58.923 45.455 0.00 0.00 38.31 3.41
552 699 3.503748 GCAGTGGCTTTACATTCTCTGTT 59.496 43.478 0.00 0.00 36.81 3.16
553 700 4.022849 GCAGTGGCTTTACATTCTCTGTTT 60.023 41.667 0.00 0.00 36.81 2.83
554 701 5.455392 CAGTGGCTTTACATTCTCTGTTTG 58.545 41.667 0.00 0.00 39.39 2.93
566 713 2.103094 TCTCTGTTTGGTGACCTGTGAG 59.897 50.000 2.11 4.01 0.00 3.51
584 731 2.544844 AGGTACTCCCTCCATTCGAA 57.455 50.000 0.00 0.00 40.71 3.71
585 732 2.829023 AGGTACTCCCTCCATTCGAAA 58.171 47.619 0.00 0.00 40.71 3.46
586 733 3.385115 AGGTACTCCCTCCATTCGAAAT 58.615 45.455 0.00 0.00 40.71 2.17
587 734 3.780850 AGGTACTCCCTCCATTCGAAATT 59.219 43.478 0.00 0.00 40.71 1.82
588 735 4.966805 AGGTACTCCCTCCATTCGAAATTA 59.033 41.667 0.00 0.00 40.71 1.40
589 736 5.055144 GGTACTCCCTCCATTCGAAATTAC 58.945 45.833 0.00 0.00 0.00 1.89
590 737 5.163332 GGTACTCCCTCCATTCGAAATTACT 60.163 44.000 0.00 0.00 0.00 2.24
591 738 5.437191 ACTCCCTCCATTCGAAATTACTT 57.563 39.130 0.00 0.00 0.00 2.24
592 739 5.186198 ACTCCCTCCATTCGAAATTACTTG 58.814 41.667 0.00 0.00 0.00 3.16
593 740 5.174037 TCCCTCCATTCGAAATTACTTGT 57.826 39.130 0.00 0.00 0.00 3.16
594 741 5.183228 TCCCTCCATTCGAAATTACTTGTC 58.817 41.667 0.00 0.00 0.00 3.18
595 742 4.034048 CCCTCCATTCGAAATTACTTGTCG 59.966 45.833 0.00 0.00 36.12 4.35
596 743 4.494199 CCTCCATTCGAAATTACTTGTCGC 60.494 45.833 0.00 0.00 34.80 5.19
597 744 3.997681 TCCATTCGAAATTACTTGTCGCA 59.002 39.130 0.00 0.00 34.80 5.10
598 745 4.092821 TCCATTCGAAATTACTTGTCGCAG 59.907 41.667 0.00 0.00 34.80 5.18
599 746 4.092821 CCATTCGAAATTACTTGTCGCAGA 59.907 41.667 0.00 0.00 34.80 4.26
600 747 5.390461 CCATTCGAAATTACTTGTCGCAGAA 60.390 40.000 0.00 0.00 39.69 3.02
601 748 5.660629 TTCGAAATTACTTGTCGCAGAAA 57.339 34.783 0.00 0.00 39.69 2.52
602 749 5.856126 TCGAAATTACTTGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
603 750 6.954616 TCGAAATTACTTGTCGCAGAAATA 57.045 33.333 0.00 0.00 39.69 1.40
604 751 6.989437 TCGAAATTACTTGTCGCAGAAATAG 58.011 36.000 0.00 0.00 39.69 1.73
605 752 6.035650 TCGAAATTACTTGTCGCAGAAATAGG 59.964 38.462 0.00 0.00 39.69 2.57
606 753 6.183360 CGAAATTACTTGTCGCAGAAATAGGT 60.183 38.462 0.00 0.00 39.69 3.08
607 754 6.422776 AATTACTTGTCGCAGAAATAGGTG 57.577 37.500 0.00 0.00 39.69 4.00
608 755 3.402628 ACTTGTCGCAGAAATAGGTGT 57.597 42.857 0.00 0.00 39.69 4.16
609 756 4.530710 ACTTGTCGCAGAAATAGGTGTA 57.469 40.909 0.00 0.00 39.69 2.90
610 757 5.086104 ACTTGTCGCAGAAATAGGTGTAT 57.914 39.130 0.00 0.00 39.69 2.29
611 758 4.870426 ACTTGTCGCAGAAATAGGTGTATG 59.130 41.667 0.00 0.00 39.69 2.39
612 759 4.465632 TGTCGCAGAAATAGGTGTATGT 57.534 40.909 0.00 0.00 39.69 2.29
613 760 5.585820 TGTCGCAGAAATAGGTGTATGTA 57.414 39.130 0.00 0.00 39.69 2.29
614 761 5.588240 TGTCGCAGAAATAGGTGTATGTAG 58.412 41.667 0.00 0.00 39.69 2.74
615 762 5.358725 TGTCGCAGAAATAGGTGTATGTAGA 59.641 40.000 0.00 0.00 39.69 2.59
616 763 5.686397 GTCGCAGAAATAGGTGTATGTAGAC 59.314 44.000 0.00 0.00 39.69 2.59
617 764 5.358725 TCGCAGAAATAGGTGTATGTAGACA 59.641 40.000 0.00 0.00 0.00 3.41
618 765 6.040504 TCGCAGAAATAGGTGTATGTAGACAT 59.959 38.462 0.08 0.08 40.22 3.06
619 766 7.229907 TCGCAGAAATAGGTGTATGTAGACATA 59.770 37.037 0.00 0.00 37.76 2.29
620 767 8.029522 CGCAGAAATAGGTGTATGTAGACATAT 58.970 37.037 5.69 0.00 40.53 1.78
621 768 9.712305 GCAGAAATAGGTGTATGTAGACATATT 57.288 33.333 5.69 2.58 40.53 1.28
660 807 6.097915 TCCATATCGGAGACAACTAATTCC 57.902 41.667 0.00 0.00 42.51 3.01
661 808 5.600898 TCCATATCGGAGACAACTAATTCCA 59.399 40.000 0.00 0.00 42.51 3.53
662 809 6.099125 TCCATATCGGAGACAACTAATTCCAA 59.901 38.462 0.00 0.00 42.51 3.53
663 810 6.765989 CCATATCGGAGACAACTAATTCCAAA 59.234 38.462 0.00 0.00 42.51 3.28
664 811 7.254795 CCATATCGGAGACAACTAATTCCAAAC 60.255 40.741 0.00 0.00 42.51 2.93
665 812 3.991773 TCGGAGACAACTAATTCCAAACG 59.008 43.478 0.00 0.00 0.00 3.60
666 813 3.124636 CGGAGACAACTAATTCCAAACGG 59.875 47.826 0.00 0.00 0.00 4.44
667 814 4.320870 GGAGACAACTAATTCCAAACGGA 58.679 43.478 0.00 0.00 0.00 4.69
668 815 4.392138 GGAGACAACTAATTCCAAACGGAG 59.608 45.833 0.00 0.00 32.88 4.63
669 816 4.324267 AGACAACTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
670 817 3.418047 ACAACTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
671 818 3.073356 ACAACTAATTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
672 819 3.629142 ACTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
673 820 2.910977 ACTAATTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
674 821 4.098894 ACTAATTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
675 822 4.720273 ACTAATTCCAAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 34.02 2.12
676 823 5.901276 ACTAATTCCAAACGGAGGGAGTATA 59.099 40.000 0.00 0.00 34.02 1.47
677 824 5.703730 AATTCCAAACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 34.02 0.98
678 825 5.703730 ATTCCAAACGGAGGGAGTATAAA 57.296 39.130 0.00 0.00 34.02 1.40
679 826 4.476628 TCCAAACGGAGGGAGTATAAAC 57.523 45.455 0.00 0.00 0.00 2.01
680 827 3.119029 TCCAAACGGAGGGAGTATAAACG 60.119 47.826 0.00 0.00 0.00 3.60
681 828 3.119029 CCAAACGGAGGGAGTATAAACGA 60.119 47.826 0.00 0.00 0.00 3.85
682 829 4.497300 CAAACGGAGGGAGTATAAACGAA 58.503 43.478 0.00 0.00 0.00 3.85
683 830 4.806640 AACGGAGGGAGTATAAACGAAA 57.193 40.909 0.00 0.00 0.00 3.46
684 831 4.806640 ACGGAGGGAGTATAAACGAAAA 57.193 40.909 0.00 0.00 0.00 2.29
685 832 4.498241 ACGGAGGGAGTATAAACGAAAAC 58.502 43.478 0.00 0.00 0.00 2.43
686 833 4.221482 ACGGAGGGAGTATAAACGAAAACT 59.779 41.667 0.00 0.00 0.00 2.66
744 915 2.579738 GAGGGACAGGAAGGCGTC 59.420 66.667 0.00 0.00 0.00 5.19
762 933 2.336809 GCGCCGATGGAGTAGAGG 59.663 66.667 0.00 0.00 0.00 3.69
763 934 2.194212 GCGCCGATGGAGTAGAGGA 61.194 63.158 0.00 0.00 0.00 3.71
764 935 1.953017 CGCCGATGGAGTAGAGGAG 59.047 63.158 0.00 0.00 0.00 3.69
765 936 1.663173 GCCGATGGAGTAGAGGAGC 59.337 63.158 0.00 0.00 0.00 4.70
766 937 1.953017 CCGATGGAGTAGAGGAGCG 59.047 63.158 0.00 0.00 0.00 5.03
767 938 0.535328 CCGATGGAGTAGAGGAGCGA 60.535 60.000 0.00 0.00 0.00 4.93
768 939 1.309950 CGATGGAGTAGAGGAGCGAA 58.690 55.000 0.00 0.00 0.00 4.70
769 940 1.002251 CGATGGAGTAGAGGAGCGAAC 60.002 57.143 0.00 0.00 0.00 3.95
770 941 1.002251 GATGGAGTAGAGGAGCGAACG 60.002 57.143 0.00 0.00 0.00 3.95
771 942 0.322277 TGGAGTAGAGGAGCGAACGT 60.322 55.000 0.00 0.00 0.00 3.99
772 943 0.810016 GGAGTAGAGGAGCGAACGTT 59.190 55.000 0.00 0.00 0.00 3.99
773 944 1.201880 GGAGTAGAGGAGCGAACGTTT 59.798 52.381 0.46 0.00 0.00 3.60
774 945 2.352519 GGAGTAGAGGAGCGAACGTTTT 60.353 50.000 0.46 0.00 0.00 2.43
775 946 2.662156 GAGTAGAGGAGCGAACGTTTTG 59.338 50.000 0.46 0.00 0.00 2.44
776 947 1.126296 GTAGAGGAGCGAACGTTTTGC 59.874 52.381 16.06 16.06 40.48 3.68
814 985 7.286609 CGTTTTTCACGTAACAGTCAAATAC 57.713 36.000 0.00 0.00 44.49 1.89
825 996 2.410730 CAGTCAAATACGGTGGTTCGAC 59.589 50.000 0.00 0.00 0.00 4.20
837 1008 0.531974 GGTTCGACTCAACCTGCACA 60.532 55.000 0.00 0.00 42.46 4.57
841 1012 1.344438 TCGACTCAACCTGCACAGATT 59.656 47.619 0.00 0.00 0.00 2.40
844 1015 3.123621 CGACTCAACCTGCACAGATTAAC 59.876 47.826 0.00 0.00 0.00 2.01
848 1019 0.037697 ACCTGCACAGATTAACGCGA 60.038 50.000 15.93 0.00 0.00 5.87
866 1037 1.334779 CGACGTCTGTTATCCGATCCC 60.335 57.143 14.70 0.00 0.00 3.85
883 1054 1.609783 CCATCCTCCCCTGTTGACC 59.390 63.158 0.00 0.00 0.00 4.02
895 1076 0.681733 TGTTGACCAGGACAGCTCTC 59.318 55.000 7.25 0.00 0.00 3.20
909 1090 1.135915 AGCTCTCGAGTGCTAACCATG 59.864 52.381 33.97 0.00 42.32 3.66
942 1123 2.165319 ACCGGAGCAAACAAGAGTAC 57.835 50.000 9.46 0.00 0.00 2.73
952 1133 0.319900 ACAAGAGTACACGCAGCTGG 60.320 55.000 17.12 8.27 0.00 4.85
969 1150 2.962253 GAAGGCGGCTTCGATCGG 60.962 66.667 32.37 0.48 35.61 4.18
971 1152 3.310860 AAGGCGGCTTCGATCGGTT 62.311 57.895 19.90 0.00 35.61 4.44
972 1153 1.952102 AAGGCGGCTTCGATCGGTTA 61.952 55.000 19.90 0.18 35.61 2.85
988 1171 7.701078 TCGATCGGTTAGAGATTAGAAACTTTG 59.299 37.037 16.41 0.00 0.00 2.77
991 1174 7.673180 TCGGTTAGAGATTAGAAACTTTGGAA 58.327 34.615 0.00 0.00 0.00 3.53
994 1177 8.731605 GGTTAGAGATTAGAAACTTTGGAAAGG 58.268 37.037 4.23 0.00 40.31 3.11
1152 1335 1.153349 GGGCGAGTTCTCCATGGTC 60.153 63.158 12.58 0.00 0.00 4.02
1251 1443 9.974980 GTATTCCCTTGATTTTGTTTCTTGTTA 57.025 29.630 0.00 0.00 0.00 2.41
1269 1461 5.883685 TGTTAAGATGGAGATGCTGATCT 57.116 39.130 0.00 0.00 42.02 2.75
1365 1557 2.618241 TGCGTTGCTTGATCTTGAACTT 59.382 40.909 0.00 0.00 0.00 2.66
1406 1607 1.226379 GTGCCGCCGACATTGATTG 60.226 57.895 0.00 0.00 0.00 2.67
1407 1608 1.376553 TGCCGCCGACATTGATTGA 60.377 52.632 0.00 0.00 0.00 2.57
1408 1609 0.747644 TGCCGCCGACATTGATTGAT 60.748 50.000 0.00 0.00 0.00 2.57
1409 1610 0.381801 GCCGCCGACATTGATTGATT 59.618 50.000 0.00 0.00 0.00 2.57
1414 1615 4.518217 CGCCGACATTGATTGATTAGTTC 58.482 43.478 0.00 0.00 0.00 3.01
1426 1627 7.974675 TGATTGATTAGTTCGTTTGATCCTTC 58.025 34.615 0.00 0.00 0.00 3.46
1428 1629 5.183228 TGATTAGTTCGTTTGATCCTTCCC 58.817 41.667 0.00 0.00 0.00 3.97
1442 1643 4.871933 TCCTTCCCTTTTTCTTGATTGC 57.128 40.909 0.00 0.00 0.00 3.56
1445 1650 2.593026 TCCCTTTTTCTTGATTGCCGT 58.407 42.857 0.00 0.00 0.00 5.68
1901 2106 3.458163 GCGACCTCATCCCCACGA 61.458 66.667 0.00 0.00 0.00 4.35
2344 2582 1.227118 CGGCCGGCAACAAGTTTTT 60.227 52.632 30.85 0.00 0.00 1.94
2388 2632 5.768317 GCAGTAGCTAGAGAGGATACTTTG 58.232 45.833 0.00 0.00 43.29 2.77
2389 2633 5.533154 GCAGTAGCTAGAGAGGATACTTTGA 59.467 44.000 0.00 0.00 43.29 2.69
2390 2634 6.514376 GCAGTAGCTAGAGAGGATACTTTGAC 60.514 46.154 0.00 0.00 43.29 3.18
2419 2663 1.153784 GCATGTTGCCGGTGGAATG 60.154 57.895 1.90 4.12 37.42 2.67
2467 2712 1.537776 GCTCCCTCATGTCATGTCTCG 60.538 57.143 12.54 0.16 0.00 4.04
2545 2790 0.250513 CCCTGCTTGGTGTCTAGGAC 59.749 60.000 0.00 0.00 0.00 3.85
2546 2791 0.250513 CCTGCTTGGTGTCTAGGACC 59.749 60.000 5.19 5.19 0.00 4.46
2592 2843 5.601729 TGGGCATCCATATTTTAGAATGCAA 59.398 36.000 7.36 0.00 38.32 4.08
2593 2844 5.928264 GGGCATCCATATTTTAGAATGCAAC 59.072 40.000 7.36 0.00 35.69 4.17
2594 2845 5.630680 GGCATCCATATTTTAGAATGCAACG 59.369 40.000 7.36 0.00 35.69 4.10
2595 2846 6.208644 GCATCCATATTTTAGAATGCAACGT 58.791 36.000 0.00 0.00 34.31 3.99
2596 2847 6.360681 GCATCCATATTTTAGAATGCAACGTC 59.639 38.462 0.00 0.00 34.31 4.34
2598 2849 7.384439 TCCATATTTTAGAATGCAACGTCAA 57.616 32.000 0.00 0.00 0.00 3.18
2600 2851 8.465999 TCCATATTTTAGAATGCAACGTCAATT 58.534 29.630 0.00 0.00 0.00 2.32
2601 2852 8.533965 CCATATTTTAGAATGCAACGTCAATTG 58.466 33.333 0.00 0.00 0.00 2.32
2602 2853 9.075519 CATATTTTAGAATGCAACGTCAATTGT 57.924 29.630 5.13 0.00 31.83 2.71
2606 2857 5.689383 AGAATGCAACGTCAATTGTACTT 57.311 34.783 5.13 0.00 31.83 2.24
2607 2858 5.689819 AGAATGCAACGTCAATTGTACTTC 58.310 37.500 5.13 2.45 31.83 3.01
2609 2860 3.472652 TGCAACGTCAATTGTACTTCCT 58.527 40.909 5.13 0.00 31.83 3.36
2610 2861 3.496884 TGCAACGTCAATTGTACTTCCTC 59.503 43.478 5.13 0.00 31.83 3.71
2611 2862 3.120304 GCAACGTCAATTGTACTTCCTCC 60.120 47.826 5.13 0.00 31.83 4.30
2612 2863 3.329929 ACGTCAATTGTACTTCCTCCC 57.670 47.619 5.13 0.00 0.00 4.30
2613 2864 2.904434 ACGTCAATTGTACTTCCTCCCT 59.096 45.455 5.13 0.00 0.00 4.20
2615 2866 3.522553 GTCAATTGTACTTCCTCCCTCG 58.477 50.000 5.13 0.00 0.00 4.63
2616 2867 2.500098 TCAATTGTACTTCCTCCCTCGG 59.500 50.000 5.13 0.00 0.00 4.63
2617 2868 2.500098 CAATTGTACTTCCTCCCTCGGA 59.500 50.000 0.00 0.00 0.00 4.55
2618 2869 2.544844 TTGTACTTCCTCCCTCGGAT 57.455 50.000 0.00 0.00 32.02 4.18
2619 2870 3.675348 TTGTACTTCCTCCCTCGGATA 57.325 47.619 0.00 0.00 32.02 2.59
2620 2871 3.897657 TGTACTTCCTCCCTCGGATAT 57.102 47.619 0.00 0.00 32.02 1.63
2621 2872 3.497332 TGTACTTCCTCCCTCGGATATG 58.503 50.000 0.00 0.00 32.02 1.78
2622 2873 2.016905 ACTTCCTCCCTCGGATATGG 57.983 55.000 0.00 0.00 32.02 2.74
2623 2874 1.503784 ACTTCCTCCCTCGGATATGGA 59.496 52.381 0.00 0.00 32.02 3.41
2624 2875 2.112691 ACTTCCTCCCTCGGATATGGAT 59.887 50.000 0.00 0.00 32.02 3.41
2625 2876 2.238084 TCCTCCCTCGGATATGGATG 57.762 55.000 0.00 0.00 0.00 3.51
2631 2882 5.399152 CCTCCCTCGGATATGGATGTATCTA 60.399 48.000 0.00 0.00 32.78 1.98
2632 2883 5.446860 TCCCTCGGATATGGATGTATCTAC 58.553 45.833 0.00 0.00 32.78 2.59
2633 2884 5.044402 TCCCTCGGATATGGATGTATCTACA 60.044 44.000 0.00 0.00 40.98 2.74
2635 2886 6.154534 CCCTCGGATATGGATGTATCTACAAA 59.845 42.308 0.00 0.00 39.99 2.83
2636 2887 7.147655 CCCTCGGATATGGATGTATCTACAAAT 60.148 40.741 0.00 0.00 39.99 2.32
2637 2888 8.914011 CCTCGGATATGGATGTATCTACAAATA 58.086 37.037 0.00 0.00 39.99 1.40
2663 2914 9.978044 AAAATACGTCTAGGTACATCTATTTCC 57.022 33.333 0.00 0.00 0.00 3.13
2664 2915 5.686159 ACGTCTAGGTACATCTATTTCCG 57.314 43.478 0.00 0.00 0.00 4.30
2665 2916 4.023365 ACGTCTAGGTACATCTATTTCCGC 60.023 45.833 0.00 0.00 0.00 5.54
2666 2917 4.474113 GTCTAGGTACATCTATTTCCGCG 58.526 47.826 0.00 0.00 0.00 6.46
2667 2918 4.214971 GTCTAGGTACATCTATTTCCGCGA 59.785 45.833 8.23 0.00 0.00 5.87
2668 2919 3.366440 AGGTACATCTATTTCCGCGAC 57.634 47.619 8.23 0.00 0.00 5.19
2669 2920 2.691526 AGGTACATCTATTTCCGCGACA 59.308 45.455 8.23 0.00 0.00 4.35
2670 2921 3.131577 AGGTACATCTATTTCCGCGACAA 59.868 43.478 8.23 0.00 0.00 3.18
2671 2922 3.489785 GGTACATCTATTTCCGCGACAAG 59.510 47.826 8.23 0.00 0.00 3.16
2672 2923 3.247006 ACATCTATTTCCGCGACAAGT 57.753 42.857 8.23 0.00 0.00 3.16
2673 2924 4.380841 ACATCTATTTCCGCGACAAGTA 57.619 40.909 8.23 0.00 0.00 2.24
2674 2925 4.751060 ACATCTATTTCCGCGACAAGTAA 58.249 39.130 8.23 0.00 0.00 2.24
2675 2926 5.357257 ACATCTATTTCCGCGACAAGTAAT 58.643 37.500 8.23 0.00 0.00 1.89
2676 2927 5.815740 ACATCTATTTCCGCGACAAGTAATT 59.184 36.000 8.23 0.00 0.00 1.40
2677 2928 5.961395 TCTATTTCCGCGACAAGTAATTC 57.039 39.130 8.23 0.00 0.00 2.17
2678 2929 4.807304 TCTATTTCCGCGACAAGTAATTCC 59.193 41.667 8.23 0.00 0.00 3.01
2679 2930 2.459060 TTCCGCGACAAGTAATTCCA 57.541 45.000 8.23 0.00 0.00 3.53
2680 2931 2.459060 TCCGCGACAAGTAATTCCAA 57.541 45.000 8.23 0.00 0.00 3.53
2681 2932 2.768698 TCCGCGACAAGTAATTCCAAA 58.231 42.857 8.23 0.00 0.00 3.28
2682 2933 2.481185 TCCGCGACAAGTAATTCCAAAC 59.519 45.455 8.23 0.00 0.00 2.93
2683 2934 2.492001 CGCGACAAGTAATTCCAAACG 58.508 47.619 0.00 0.00 0.00 3.60
2684 2935 2.723618 CGCGACAAGTAATTCCAAACGG 60.724 50.000 0.00 0.00 0.00 4.44
2685 2936 2.481185 GCGACAAGTAATTCCAAACGGA 59.519 45.455 0.00 0.00 0.00 4.69
2686 2937 3.424433 GCGACAAGTAATTCCAAACGGAG 60.424 47.826 0.00 0.00 32.88 4.63
2687 2938 3.991773 CGACAAGTAATTCCAAACGGAGA 59.008 43.478 0.00 0.00 32.88 3.71
2688 2939 4.091509 CGACAAGTAATTCCAAACGGAGAG 59.908 45.833 0.00 0.00 32.88 3.20
2689 2940 5.223449 ACAAGTAATTCCAAACGGAGAGA 57.777 39.130 0.00 0.00 32.88 3.10
2690 2941 5.238583 ACAAGTAATTCCAAACGGAGAGAG 58.761 41.667 0.00 0.00 32.88 3.20
2691 2942 5.221661 ACAAGTAATTCCAAACGGAGAGAGT 60.222 40.000 0.00 0.00 32.88 3.24
2692 2943 6.014840 ACAAGTAATTCCAAACGGAGAGAGTA 60.015 38.462 0.00 0.00 32.88 2.59
2693 2944 6.793505 AGTAATTCCAAACGGAGAGAGTAT 57.206 37.500 0.00 0.00 32.88 2.12
2694 2945 6.807789 AGTAATTCCAAACGGAGAGAGTATC 58.192 40.000 0.00 0.00 32.88 2.24
2707 2958 2.409152 GAGTATCTCGCACTGCCTAC 57.591 55.000 0.00 0.00 0.00 3.18
2708 2959 1.950909 GAGTATCTCGCACTGCCTACT 59.049 52.381 0.00 0.00 0.00 2.57
2709 2960 3.139850 GAGTATCTCGCACTGCCTACTA 58.860 50.000 0.00 0.00 0.00 1.82
2710 2961 3.754323 GAGTATCTCGCACTGCCTACTAT 59.246 47.826 0.00 0.00 0.00 2.12
2713 2964 2.656002 TCTCGCACTGCCTACTATCTT 58.344 47.619 0.00 0.00 0.00 2.40
2729 2980 5.074115 ACTATCTTCGTCTCCCCAATCTAG 58.926 45.833 0.00 0.00 0.00 2.43
2738 2989 4.099727 GTCTCCCCAATCTAGTCTTACCAC 59.900 50.000 0.00 0.00 0.00 4.16
2740 2991 3.013648 TCCCCAATCTAGTCTTACCACCT 59.986 47.826 0.00 0.00 0.00 4.00
2741 2992 4.233521 TCCCCAATCTAGTCTTACCACCTA 59.766 45.833 0.00 0.00 0.00 3.08
2742 2993 4.966805 CCCCAATCTAGTCTTACCACCTAA 59.033 45.833 0.00 0.00 0.00 2.69
2743 2994 5.070580 CCCCAATCTAGTCTTACCACCTAAG 59.929 48.000 0.00 0.00 34.12 2.18
2744 2995 5.661759 CCCAATCTAGTCTTACCACCTAAGT 59.338 44.000 0.00 0.00 34.43 2.24
2745 2996 6.183360 CCCAATCTAGTCTTACCACCTAAGTC 60.183 46.154 0.00 0.00 34.43 3.01
2746 2997 6.380274 CCAATCTAGTCTTACCACCTAAGTCA 59.620 42.308 0.00 0.00 34.43 3.41
2747 2998 7.093465 CCAATCTAGTCTTACCACCTAAGTCAA 60.093 40.741 0.00 0.00 34.43 3.18
2748 2999 8.478877 CAATCTAGTCTTACCACCTAAGTCAAT 58.521 37.037 0.00 0.00 34.43 2.57
2749 3000 7.406031 TCTAGTCTTACCACCTAAGTCAATG 57.594 40.000 0.00 0.00 34.43 2.82
2750 3001 5.422214 AGTCTTACCACCTAAGTCAATGG 57.578 43.478 0.00 0.00 38.26 3.16
2751 3002 3.939592 GTCTTACCACCTAAGTCAATGGC 59.060 47.826 0.00 0.00 35.49 4.40
2752 3003 3.844211 TCTTACCACCTAAGTCAATGGCT 59.156 43.478 0.00 0.00 35.49 4.75
2753 3004 2.789409 ACCACCTAAGTCAATGGCTC 57.211 50.000 0.00 0.00 35.49 4.70
2754 3005 1.985159 ACCACCTAAGTCAATGGCTCA 59.015 47.619 0.00 0.00 35.49 4.26
2755 3006 2.578021 ACCACCTAAGTCAATGGCTCAT 59.422 45.455 0.00 0.00 35.49 2.90
2756 3007 3.209410 CCACCTAAGTCAATGGCTCATC 58.791 50.000 0.00 0.00 0.00 2.92
2757 3008 3.209410 CACCTAAGTCAATGGCTCATCC 58.791 50.000 0.00 0.00 0.00 3.51
2758 3009 2.158900 ACCTAAGTCAATGGCTCATCCG 60.159 50.000 0.00 0.00 37.80 4.18
2759 3010 2.487934 CTAAGTCAATGGCTCATCCGG 58.512 52.381 0.00 0.00 37.80 5.14
2760 3011 0.620556 AAGTCAATGGCTCATCCGGT 59.379 50.000 0.00 0.00 37.80 5.28
2761 3012 0.179000 AGTCAATGGCTCATCCGGTC 59.821 55.000 0.00 0.00 37.80 4.79
2762 3013 0.107703 GTCAATGGCTCATCCGGTCA 60.108 55.000 0.00 0.00 37.80 4.02
2763 3014 0.107703 TCAATGGCTCATCCGGTCAC 60.108 55.000 0.00 0.00 37.80 3.67
2764 3015 0.392863 CAATGGCTCATCCGGTCACA 60.393 55.000 0.00 0.00 37.80 3.58
2765 3016 0.327924 AATGGCTCATCCGGTCACAA 59.672 50.000 0.00 0.00 37.80 3.33
2766 3017 0.548031 ATGGCTCATCCGGTCACAAT 59.452 50.000 0.00 0.00 37.80 2.71
2774 3025 0.902531 TCCGGTCACAATCTCCCTTC 59.097 55.000 0.00 0.00 0.00 3.46
2775 3026 0.905357 CCGGTCACAATCTCCCTTCT 59.095 55.000 0.00 0.00 0.00 2.85
2787 3038 2.584608 CCTTCTACTGCCACCCCG 59.415 66.667 0.00 0.00 0.00 5.73
2788 3039 2.584608 CTTCTACTGCCACCCCGG 59.415 66.667 0.00 0.00 38.11 5.73
2808 3059 4.047822 CGGCACACTTTGAATTTAAAGCA 58.952 39.130 19.50 0.00 40.48 3.91
2811 3062 5.276820 GGCACACTTTGAATTTAAAGCACAC 60.277 40.000 19.50 9.30 40.48 3.82
2816 3067 8.389603 ACACTTTGAATTTAAAGCACACAATTG 58.610 29.630 19.50 3.24 40.48 2.32
2827 3078 3.951115 CACAATTGTGCAGCTGTGT 57.049 47.368 24.69 7.61 39.39 3.72
2847 3098 7.698130 GCTGTGTATATGTGAAGATTCCAAAAC 59.302 37.037 0.00 0.00 0.00 2.43
2850 3101 8.946085 GTGTATATGTGAAGATTCCAAAACAGA 58.054 33.333 0.00 0.00 0.00 3.41
2972 3256 3.152341 AGCTCACAAAATGGACCTGAAG 58.848 45.455 0.00 0.00 0.00 3.02
2973 3257 2.229784 GCTCACAAAATGGACCTGAAGG 59.770 50.000 0.00 0.00 42.17 3.46
2974 3258 2.229784 CTCACAAAATGGACCTGAAGGC 59.770 50.000 0.00 0.00 39.32 4.35
2975 3259 2.158475 TCACAAAATGGACCTGAAGGCT 60.158 45.455 0.00 0.00 39.32 4.58
2976 3260 2.029649 CACAAAATGGACCTGAAGGCTG 60.030 50.000 0.00 0.00 39.32 4.85
2977 3261 2.158475 ACAAAATGGACCTGAAGGCTGA 60.158 45.455 0.00 0.00 39.32 4.26
3071 3355 4.034048 AGCAAATCGGTAGTTAAATGCTCG 59.966 41.667 0.00 0.00 38.42 5.03
3072 3356 4.033587 GCAAATCGGTAGTTAAATGCTCGA 59.966 41.667 6.93 6.93 0.00 4.04
3087 3371 4.015872 TGCTCGAATAACCAACTTTCCT 57.984 40.909 0.00 0.00 0.00 3.36
3135 3433 6.757897 TTTTACACCATCCTTTGCATAGAG 57.242 37.500 5.65 0.00 0.00 2.43
3267 3565 8.606602 GGTCGAATATTTTATTTCCGTGTACTT 58.393 33.333 0.00 0.00 0.00 2.24
3268 3566 9.977762 GTCGAATATTTTATTTCCGTGTACTTT 57.022 29.630 0.00 0.00 0.00 2.66
3296 3598 3.922171 ATTGGAGGAAGGAGATGTGAC 57.078 47.619 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.877137 CTTTAAACAACTTTCAAAAACAAGCTT 57.123 25.926 0.00 0.00 0.00 3.74
2 3 8.015087 GCTTTAAACAACTTTCAAAAACAAGCT 58.985 29.630 0.00 0.00 0.00 3.74
3 4 7.006122 CGCTTTAAACAACTTTCAAAAACAAGC 59.994 33.333 0.00 0.00 0.00 4.01
4 5 7.006122 GCGCTTTAAACAACTTTCAAAAACAAG 59.994 33.333 0.00 0.00 0.00 3.16
5 6 6.792726 GCGCTTTAAACAACTTTCAAAAACAA 59.207 30.769 0.00 0.00 0.00 2.83
6 7 6.300356 GCGCTTTAAACAACTTTCAAAAACA 58.700 32.000 0.00 0.00 0.00 2.83
7 8 5.730802 GGCGCTTTAAACAACTTTCAAAAAC 59.269 36.000 7.64 0.00 0.00 2.43
8 9 5.639931 AGGCGCTTTAAACAACTTTCAAAAA 59.360 32.000 7.64 0.00 0.00 1.94
9 10 5.172205 AGGCGCTTTAAACAACTTTCAAAA 58.828 33.333 7.64 0.00 0.00 2.44
10 11 4.749976 AGGCGCTTTAAACAACTTTCAAA 58.250 34.783 7.64 0.00 0.00 2.69
11 12 4.379339 AGGCGCTTTAAACAACTTTCAA 57.621 36.364 7.64 0.00 0.00 2.69
12 13 4.379339 AAGGCGCTTTAAACAACTTTCA 57.621 36.364 7.64 0.00 0.00 2.69
13 14 5.712217 AAAAGGCGCTTTAAACAACTTTC 57.288 34.783 4.75 0.00 31.99 2.62
35 36 4.709397 ACATTTGTGGTGGTCTGAGAAAAA 59.291 37.500 0.00 0.00 0.00 1.94
36 37 4.277476 ACATTTGTGGTGGTCTGAGAAAA 58.723 39.130 0.00 0.00 0.00 2.29
37 38 3.897239 ACATTTGTGGTGGTCTGAGAAA 58.103 40.909 0.00 0.00 0.00 2.52
38 39 3.576078 ACATTTGTGGTGGTCTGAGAA 57.424 42.857 0.00 0.00 0.00 2.87
39 40 3.576078 AACATTTGTGGTGGTCTGAGA 57.424 42.857 0.00 0.00 0.00 3.27
40 41 5.964958 AATAACATTTGTGGTGGTCTGAG 57.035 39.130 0.00 0.00 0.00 3.35
41 42 6.068010 AGAAATAACATTTGTGGTGGTCTGA 58.932 36.000 0.00 0.00 0.00 3.27
42 43 6.331369 AGAAATAACATTTGTGGTGGTCTG 57.669 37.500 0.00 0.00 0.00 3.51
43 44 6.549364 TCAAGAAATAACATTTGTGGTGGTCT 59.451 34.615 0.00 0.00 0.00 3.85
44 45 6.640907 GTCAAGAAATAACATTTGTGGTGGTC 59.359 38.462 0.00 0.00 0.00 4.02
45 46 6.462347 GGTCAAGAAATAACATTTGTGGTGGT 60.462 38.462 0.00 0.00 0.00 4.16
46 47 5.925969 GGTCAAGAAATAACATTTGTGGTGG 59.074 40.000 0.00 0.00 0.00 4.61
47 48 6.511416 TGGTCAAGAAATAACATTTGTGGTG 58.489 36.000 0.00 0.00 0.00 4.17
48 49 6.723298 TGGTCAAGAAATAACATTTGTGGT 57.277 33.333 0.00 0.00 0.00 4.16
49 50 8.606040 AATTGGTCAAGAAATAACATTTGTGG 57.394 30.769 0.00 0.00 0.00 4.17
52 53 9.796062 CGAAAATTGGTCAAGAAATAACATTTG 57.204 29.630 0.00 0.00 0.00 2.32
53 54 9.541143 ACGAAAATTGGTCAAGAAATAACATTT 57.459 25.926 0.00 0.00 0.00 2.32
55 56 9.620660 GTACGAAAATTGGTCAAGAAATAACAT 57.379 29.630 0.00 0.00 0.00 2.71
56 57 8.622157 TGTACGAAAATTGGTCAAGAAATAACA 58.378 29.630 0.00 0.00 0.00 2.41
57 58 9.113876 CTGTACGAAAATTGGTCAAGAAATAAC 57.886 33.333 0.00 0.00 0.00 1.89
58 59 8.842280 ACTGTACGAAAATTGGTCAAGAAATAA 58.158 29.630 0.00 0.00 0.00 1.40
59 60 8.385898 ACTGTACGAAAATTGGTCAAGAAATA 57.614 30.769 0.00 0.00 0.00 1.40
60 61 7.012894 TGACTGTACGAAAATTGGTCAAGAAAT 59.987 33.333 0.00 0.00 30.81 2.17
61 62 6.316640 TGACTGTACGAAAATTGGTCAAGAAA 59.683 34.615 0.00 0.00 30.81 2.52
62 63 5.818336 TGACTGTACGAAAATTGGTCAAGAA 59.182 36.000 0.00 0.00 30.81 2.52
63 64 5.361427 TGACTGTACGAAAATTGGTCAAGA 58.639 37.500 0.00 0.00 30.81 3.02
64 65 5.666969 TGACTGTACGAAAATTGGTCAAG 57.333 39.130 0.00 0.00 30.81 3.02
65 66 6.438259 TTTGACTGTACGAAAATTGGTCAA 57.562 33.333 0.00 0.00 39.41 3.18
66 67 6.127980 TGTTTTGACTGTACGAAAATTGGTCA 60.128 34.615 0.00 0.00 0.00 4.02
67 68 6.259638 TGTTTTGACTGTACGAAAATTGGTC 58.740 36.000 0.00 0.00 0.00 4.02
68 69 6.197364 TGTTTTGACTGTACGAAAATTGGT 57.803 33.333 0.00 0.00 0.00 3.67
69 70 6.291585 GCTTGTTTTGACTGTACGAAAATTGG 60.292 38.462 0.00 0.00 0.00 3.16
70 71 6.252441 TGCTTGTTTTGACTGTACGAAAATTG 59.748 34.615 0.00 0.00 0.00 2.32
71 72 6.252655 GTGCTTGTTTTGACTGTACGAAAATT 59.747 34.615 0.00 0.00 0.00 1.82
72 73 5.741982 GTGCTTGTTTTGACTGTACGAAAAT 59.258 36.000 0.00 0.00 0.00 1.82
73 74 5.090083 GTGCTTGTTTTGACTGTACGAAAA 58.910 37.500 0.00 0.00 0.00 2.29
74 75 4.154375 TGTGCTTGTTTTGACTGTACGAAA 59.846 37.500 0.00 0.00 0.00 3.46
75 76 3.685272 TGTGCTTGTTTTGACTGTACGAA 59.315 39.130 0.00 0.00 0.00 3.85
76 77 3.062909 GTGTGCTTGTTTTGACTGTACGA 59.937 43.478 0.00 0.00 0.00 3.43
77 78 3.181515 TGTGTGCTTGTTTTGACTGTACG 60.182 43.478 0.00 0.00 0.00 3.67
78 79 4.095610 GTGTGTGCTTGTTTTGACTGTAC 58.904 43.478 0.00 0.00 0.00 2.90
79 80 3.181515 CGTGTGTGCTTGTTTTGACTGTA 60.182 43.478 0.00 0.00 0.00 2.74
80 81 2.414029 CGTGTGTGCTTGTTTTGACTGT 60.414 45.455 0.00 0.00 0.00 3.55
81 82 2.176369 CGTGTGTGCTTGTTTTGACTG 58.824 47.619 0.00 0.00 0.00 3.51
82 83 1.810151 ACGTGTGTGCTTGTTTTGACT 59.190 42.857 0.00 0.00 0.00 3.41
83 84 2.256445 ACGTGTGTGCTTGTTTTGAC 57.744 45.000 0.00 0.00 0.00 3.18
84 85 2.999507 AACGTGTGTGCTTGTTTTGA 57.000 40.000 0.00 0.00 0.00 2.69
85 86 4.009798 TCTAACGTGTGTGCTTGTTTTG 57.990 40.909 0.00 0.00 0.00 2.44
86 87 4.688511 TTCTAACGTGTGTGCTTGTTTT 57.311 36.364 0.00 0.00 0.00 2.43
87 88 4.408694 GTTTCTAACGTGTGTGCTTGTTT 58.591 39.130 0.00 0.00 0.00 2.83
88 89 3.181504 GGTTTCTAACGTGTGTGCTTGTT 60.182 43.478 0.00 0.00 0.00 2.83
89 90 2.353579 GGTTTCTAACGTGTGTGCTTGT 59.646 45.455 0.00 0.00 0.00 3.16
90 91 2.353269 TGGTTTCTAACGTGTGTGCTTG 59.647 45.455 0.00 0.00 0.00 4.01
91 92 2.634600 TGGTTTCTAACGTGTGTGCTT 58.365 42.857 0.00 0.00 0.00 3.91
92 93 2.319136 TGGTTTCTAACGTGTGTGCT 57.681 45.000 0.00 0.00 0.00 4.40
93 94 3.408288 TTTGGTTTCTAACGTGTGTGC 57.592 42.857 0.00 0.00 0.00 4.57
117 118 9.492973 AGTCAAGCAAATAAAATAAAATGCTGT 57.507 25.926 0.00 0.00 42.82 4.40
127 128 9.612066 TCAAGGAAAAAGTCAAGCAAATAAAAT 57.388 25.926 0.00 0.00 0.00 1.82
128 129 9.612066 ATCAAGGAAAAAGTCAAGCAAATAAAA 57.388 25.926 0.00 0.00 0.00 1.52
129 130 9.612066 AATCAAGGAAAAAGTCAAGCAAATAAA 57.388 25.926 0.00 0.00 0.00 1.40
130 131 9.044150 CAATCAAGGAAAAAGTCAAGCAAATAA 57.956 29.630 0.00 0.00 0.00 1.40
131 132 8.203485 ACAATCAAGGAAAAAGTCAAGCAAATA 58.797 29.630 0.00 0.00 0.00 1.40
132 133 7.049754 ACAATCAAGGAAAAAGTCAAGCAAAT 58.950 30.769 0.00 0.00 0.00 2.32
133 134 6.405538 ACAATCAAGGAAAAAGTCAAGCAAA 58.594 32.000 0.00 0.00 0.00 3.68
134 135 5.976458 ACAATCAAGGAAAAAGTCAAGCAA 58.024 33.333 0.00 0.00 0.00 3.91
135 136 5.596836 ACAATCAAGGAAAAAGTCAAGCA 57.403 34.783 0.00 0.00 0.00 3.91
136 137 7.653311 ACAATACAATCAAGGAAAAAGTCAAGC 59.347 33.333 0.00 0.00 0.00 4.01
137 138 9.185192 GACAATACAATCAAGGAAAAAGTCAAG 57.815 33.333 0.00 0.00 0.00 3.02
138 139 8.141268 GGACAATACAATCAAGGAAAAAGTCAA 58.859 33.333 0.00 0.00 0.00 3.18
139 140 7.286546 TGGACAATACAATCAAGGAAAAAGTCA 59.713 33.333 0.00 0.00 0.00 3.41
140 141 7.657336 TGGACAATACAATCAAGGAAAAAGTC 58.343 34.615 0.00 0.00 0.00 3.01
141 142 7.595819 TGGACAATACAATCAAGGAAAAAGT 57.404 32.000 0.00 0.00 0.00 2.66
142 143 8.306038 TGATGGACAATACAATCAAGGAAAAAG 58.694 33.333 0.00 0.00 0.00 2.27
143 144 8.187913 TGATGGACAATACAATCAAGGAAAAA 57.812 30.769 0.00 0.00 0.00 1.94
144 145 7.773489 TGATGGACAATACAATCAAGGAAAA 57.227 32.000 0.00 0.00 0.00 2.29
145 146 7.773489 TTGATGGACAATACAATCAAGGAAA 57.227 32.000 0.00 0.00 33.18 3.13
146 147 7.959658 ATTGATGGACAATACAATCAAGGAA 57.040 32.000 0.00 0.00 45.92 3.36
147 148 7.959658 AATTGATGGACAATACAATCAAGGA 57.040 32.000 0.00 0.00 46.90 3.36
148 149 8.252417 TCAAATTGATGGACAATACAATCAAGG 58.748 33.333 0.00 0.00 46.90 3.61
149 150 9.642327 TTCAAATTGATGGACAATACAATCAAG 57.358 29.630 0.00 0.00 46.90 3.02
150 151 9.993454 TTTCAAATTGATGGACAATACAATCAA 57.007 25.926 0.00 0.00 46.90 2.57
151 152 9.642327 CTTTCAAATTGATGGACAATACAATCA 57.358 29.630 0.00 0.00 46.90 2.57
152 153 9.643693 ACTTTCAAATTGATGGACAATACAATC 57.356 29.630 0.00 0.00 46.90 2.67
154 155 9.829507 AAACTTTCAAATTGATGGACAATACAA 57.170 25.926 0.00 0.00 46.90 2.41
155 156 9.829507 AAAACTTTCAAATTGATGGACAATACA 57.170 25.926 0.00 0.00 46.90 2.29
199 200 3.118075 TGACATTTGTGGTGGTCTGAGAA 60.118 43.478 0.00 0.00 0.00 2.87
200 201 2.437651 TGACATTTGTGGTGGTCTGAGA 59.562 45.455 0.00 0.00 0.00 3.27
220 221 6.583806 ACTCTGCGAAAATTGCTTAAGAAATG 59.416 34.615 9.56 0.00 0.00 2.32
221 222 6.681777 ACTCTGCGAAAATTGCTTAAGAAAT 58.318 32.000 6.67 4.45 0.00 2.17
228 229 3.988379 TTGACTCTGCGAAAATTGCTT 57.012 38.095 0.00 0.00 0.00 3.91
230 231 3.796178 TGTTTTGACTCTGCGAAAATTGC 59.204 39.130 0.00 0.00 0.00 3.56
238 239 0.304705 ACGCTTGTTTTGACTCTGCG 59.695 50.000 0.00 0.00 46.02 5.18
242 243 4.531659 ACTTGTACGCTTGTTTTGACTC 57.468 40.909 0.00 0.00 0.00 3.36
303 304 9.657419 GATGGACAATAAAATCAAGGACAATTT 57.343 29.630 0.00 0.00 0.00 1.82
304 305 9.039165 AGATGGACAATAAAATCAAGGACAATT 57.961 29.630 0.00 0.00 0.00 2.32
308 309 6.378280 ACCAGATGGACAATAAAATCAAGGAC 59.622 38.462 5.72 0.00 38.94 3.85
330 331 2.029518 CTGAGCTCACGTGCACCA 59.970 61.111 13.74 5.21 34.99 4.17
374 376 6.418226 CCTCTTAGTGTGCAATATAGTTCGAC 59.582 42.308 0.00 0.00 0.00 4.20
375 377 6.320418 TCCTCTTAGTGTGCAATATAGTTCGA 59.680 38.462 0.00 0.00 0.00 3.71
405 407 6.578944 TGTGCAATATAGTTCGACCTTACAT 58.421 36.000 0.00 0.00 0.00 2.29
461 495 6.027749 GTGCGATTGTATTTTTAACAGGAGG 58.972 40.000 0.00 0.00 0.00 4.30
468 502 5.392595 GCCAGAGGTGCGATTGTATTTTTAA 60.393 40.000 0.00 0.00 0.00 1.52
507 654 3.751175 CCAAAGCGACTAATTGGTCTGAA 59.249 43.478 18.43 0.00 38.99 3.02
528 675 1.745653 GAGAATGTAAAGCCACTGCCC 59.254 52.381 0.00 0.00 38.69 5.36
540 687 4.102524 ACAGGTCACCAAACAGAGAATGTA 59.897 41.667 0.00 0.00 43.00 2.29
541 688 3.117888 ACAGGTCACCAAACAGAGAATGT 60.118 43.478 0.00 0.00 46.97 2.71
547 694 1.140852 CCTCACAGGTCACCAAACAGA 59.859 52.381 0.00 0.00 0.00 3.41
566 713 3.840124 ATTTCGAATGGAGGGAGTACC 57.160 47.619 0.00 0.00 40.67 3.34
569 716 5.186198 CAAGTAATTTCGAATGGAGGGAGT 58.814 41.667 0.00 0.00 0.00 3.85
570 717 5.186198 ACAAGTAATTTCGAATGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
571 718 5.174037 ACAAGTAATTTCGAATGGAGGGA 57.826 39.130 0.00 0.00 0.00 4.20
573 720 4.494199 GCGACAAGTAATTTCGAATGGAGG 60.494 45.833 0.00 0.00 34.62 4.30
574 721 4.092821 TGCGACAAGTAATTTCGAATGGAG 59.907 41.667 0.00 0.00 34.62 3.86
575 722 3.997681 TGCGACAAGTAATTTCGAATGGA 59.002 39.130 0.00 0.00 34.62 3.41
576 723 4.092821 TCTGCGACAAGTAATTTCGAATGG 59.907 41.667 0.00 0.00 34.62 3.16
577 724 5.203358 TCTGCGACAAGTAATTTCGAATG 57.797 39.130 0.00 0.00 34.62 2.67
578 725 5.856126 TTCTGCGACAAGTAATTTCGAAT 57.144 34.783 0.00 0.00 34.62 3.34
579 726 5.660629 TTTCTGCGACAAGTAATTTCGAA 57.339 34.783 0.00 0.00 34.62 3.71
580 727 5.856126 ATTTCTGCGACAAGTAATTTCGA 57.144 34.783 10.25 0.00 34.62 3.71
581 728 6.183360 ACCTATTTCTGCGACAAGTAATTTCG 60.183 38.462 0.00 4.05 35.82 3.46
582 729 6.961554 CACCTATTTCTGCGACAAGTAATTTC 59.038 38.462 0.00 0.00 0.00 2.17
583 730 6.430000 ACACCTATTTCTGCGACAAGTAATTT 59.570 34.615 0.00 0.00 0.00 1.82
584 731 5.938125 ACACCTATTTCTGCGACAAGTAATT 59.062 36.000 0.00 0.00 0.00 1.40
585 732 5.488341 ACACCTATTTCTGCGACAAGTAAT 58.512 37.500 0.00 0.00 0.00 1.89
586 733 4.890088 ACACCTATTTCTGCGACAAGTAA 58.110 39.130 0.00 0.00 0.00 2.24
587 734 4.530710 ACACCTATTTCTGCGACAAGTA 57.469 40.909 0.00 0.00 0.00 2.24
588 735 3.402628 ACACCTATTTCTGCGACAAGT 57.597 42.857 0.00 0.00 0.00 3.16
589 736 4.870426 ACATACACCTATTTCTGCGACAAG 59.130 41.667 0.00 0.00 0.00 3.16
590 737 4.827692 ACATACACCTATTTCTGCGACAA 58.172 39.130 0.00 0.00 0.00 3.18
591 738 4.465632 ACATACACCTATTTCTGCGACA 57.534 40.909 0.00 0.00 0.00 4.35
592 739 5.686397 GTCTACATACACCTATTTCTGCGAC 59.314 44.000 0.00 0.00 0.00 5.19
593 740 5.358725 TGTCTACATACACCTATTTCTGCGA 59.641 40.000 0.00 0.00 0.00 5.10
594 741 5.588240 TGTCTACATACACCTATTTCTGCG 58.412 41.667 0.00 0.00 0.00 5.18
595 742 9.712305 AATATGTCTACATACACCTATTTCTGC 57.288 33.333 4.98 0.00 41.15 4.26
621 768 9.749340 TCCGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 43.74 1.85
638 785 5.853936 TGGAATTAGTTGTCTCCGATATGG 58.146 41.667 0.00 0.00 40.09 2.74
639 786 7.516785 CGTTTGGAATTAGTTGTCTCCGATATG 60.517 40.741 0.00 0.00 0.00 1.78
640 787 6.479001 CGTTTGGAATTAGTTGTCTCCGATAT 59.521 38.462 0.00 0.00 0.00 1.63
641 788 5.808540 CGTTTGGAATTAGTTGTCTCCGATA 59.191 40.000 0.00 0.00 0.00 2.92
642 789 4.630069 CGTTTGGAATTAGTTGTCTCCGAT 59.370 41.667 0.00 0.00 0.00 4.18
643 790 3.991773 CGTTTGGAATTAGTTGTCTCCGA 59.008 43.478 0.00 0.00 0.00 4.55
644 791 3.124636 CCGTTTGGAATTAGTTGTCTCCG 59.875 47.826 0.00 0.00 37.49 4.63
645 792 4.320870 TCCGTTTGGAATTAGTTGTCTCC 58.679 43.478 0.00 0.00 42.85 3.71
646 793 4.392138 CCTCCGTTTGGAATTAGTTGTCTC 59.608 45.833 0.00 0.00 45.87 3.36
647 794 4.324267 CCTCCGTTTGGAATTAGTTGTCT 58.676 43.478 0.00 0.00 45.87 3.41
648 795 3.439129 CCCTCCGTTTGGAATTAGTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
649 796 3.073356 TCCCTCCGTTTGGAATTAGTTGT 59.927 43.478 0.00 0.00 45.87 3.32
650 797 3.681593 TCCCTCCGTTTGGAATTAGTTG 58.318 45.455 0.00 0.00 45.87 3.16
651 798 3.329814 ACTCCCTCCGTTTGGAATTAGTT 59.670 43.478 0.00 0.00 45.87 2.24
652 799 2.910977 ACTCCCTCCGTTTGGAATTAGT 59.089 45.455 0.00 0.00 45.87 2.24
653 800 3.629142 ACTCCCTCCGTTTGGAATTAG 57.371 47.619 0.00 0.00 45.87 1.73
654 801 6.811634 TTATACTCCCTCCGTTTGGAATTA 57.188 37.500 0.00 0.00 45.87 1.40
655 802 5.703730 TTATACTCCCTCCGTTTGGAATT 57.296 39.130 0.00 0.00 45.87 2.17
656 803 5.434408 GTTTATACTCCCTCCGTTTGGAAT 58.566 41.667 0.00 0.00 45.87 3.01
657 804 4.621274 CGTTTATACTCCCTCCGTTTGGAA 60.621 45.833 0.00 0.00 45.87 3.53
658 805 3.119029 CGTTTATACTCCCTCCGTTTGGA 60.119 47.826 0.00 0.00 43.88 3.53
659 806 3.119029 TCGTTTATACTCCCTCCGTTTGG 60.119 47.826 0.00 0.00 0.00 3.28
660 807 4.114058 TCGTTTATACTCCCTCCGTTTG 57.886 45.455 0.00 0.00 0.00 2.93
661 808 4.806640 TTCGTTTATACTCCCTCCGTTT 57.193 40.909 0.00 0.00 0.00 3.60
662 809 4.806640 TTTCGTTTATACTCCCTCCGTT 57.193 40.909 0.00 0.00 0.00 4.44
663 810 4.221482 AGTTTTCGTTTATACTCCCTCCGT 59.779 41.667 0.00 0.00 0.00 4.69
664 811 4.752146 AGTTTTCGTTTATACTCCCTCCG 58.248 43.478 0.00 0.00 0.00 4.63
665 812 5.727434 TGAGTTTTCGTTTATACTCCCTCC 58.273 41.667 0.00 0.00 36.94 4.30
666 813 6.310711 CACTGAGTTTTCGTTTATACTCCCTC 59.689 42.308 0.00 0.00 36.94 4.30
667 814 6.014840 TCACTGAGTTTTCGTTTATACTCCCT 60.015 38.462 0.00 0.00 36.94 4.20
668 815 6.161381 TCACTGAGTTTTCGTTTATACTCCC 58.839 40.000 0.00 0.00 36.94 4.30
669 816 7.829378 ATCACTGAGTTTTCGTTTATACTCC 57.171 36.000 0.00 0.00 36.94 3.85
672 819 9.872757 TGAAAATCACTGAGTTTTCGTTTATAC 57.127 29.630 5.96 0.00 43.69 1.47
674 821 9.450807 CTTGAAAATCACTGAGTTTTCGTTTAT 57.549 29.630 5.96 0.00 43.69 1.40
675 822 8.455682 ACTTGAAAATCACTGAGTTTTCGTTTA 58.544 29.630 5.96 0.00 43.69 2.01
676 823 7.312899 ACTTGAAAATCACTGAGTTTTCGTTT 58.687 30.769 5.96 0.00 43.69 3.60
677 824 6.852664 ACTTGAAAATCACTGAGTTTTCGTT 58.147 32.000 5.96 0.17 43.69 3.85
678 825 6.436843 ACTTGAAAATCACTGAGTTTTCGT 57.563 33.333 5.96 2.12 43.69 3.85
679 826 7.630924 ACTACTTGAAAATCACTGAGTTTTCG 58.369 34.615 5.96 1.60 43.69 3.46
680 827 7.794349 CGACTACTTGAAAATCACTGAGTTTTC 59.206 37.037 5.96 10.97 42.05 2.29
681 828 7.494625 TCGACTACTTGAAAATCACTGAGTTTT 59.505 33.333 5.96 3.25 29.95 2.43
682 829 6.984474 TCGACTACTTGAAAATCACTGAGTTT 59.016 34.615 4.16 4.16 32.49 2.66
683 830 6.513180 TCGACTACTTGAAAATCACTGAGTT 58.487 36.000 0.00 0.00 0.00 3.01
684 831 6.085555 TCGACTACTTGAAAATCACTGAGT 57.914 37.500 0.00 0.00 0.00 3.41
685 832 5.574830 CCTCGACTACTTGAAAATCACTGAG 59.425 44.000 0.00 0.00 0.00 3.35
686 833 5.470368 CCTCGACTACTTGAAAATCACTGA 58.530 41.667 0.00 0.00 0.00 3.41
744 915 2.050895 CTCTACTCCATCGGCGCG 60.051 66.667 0.00 0.00 0.00 6.86
763 934 0.531974 TCAGGAGCAAAACGTTCGCT 60.532 50.000 21.27 21.27 39.12 4.93
764 935 0.517316 ATCAGGAGCAAAACGTTCGC 59.483 50.000 13.27 13.27 0.00 4.70
765 936 2.993899 ACTATCAGGAGCAAAACGTTCG 59.006 45.455 0.00 0.00 0.00 3.95
766 937 4.712763 CAACTATCAGGAGCAAAACGTTC 58.287 43.478 0.00 0.00 0.00 3.95
767 938 3.058224 GCAACTATCAGGAGCAAAACGTT 60.058 43.478 0.00 0.00 0.00 3.99
768 939 2.484264 GCAACTATCAGGAGCAAAACGT 59.516 45.455 0.00 0.00 0.00 3.99
769 940 2.159517 GGCAACTATCAGGAGCAAAACG 60.160 50.000 0.00 0.00 0.00 3.60
770 941 2.159517 CGGCAACTATCAGGAGCAAAAC 60.160 50.000 0.00 0.00 0.00 2.43
771 942 2.083774 CGGCAACTATCAGGAGCAAAA 58.916 47.619 0.00 0.00 0.00 2.44
772 943 1.003118 ACGGCAACTATCAGGAGCAAA 59.997 47.619 0.00 0.00 0.00 3.68
773 944 0.613260 ACGGCAACTATCAGGAGCAA 59.387 50.000 0.00 0.00 0.00 3.91
774 945 0.613260 AACGGCAACTATCAGGAGCA 59.387 50.000 0.00 0.00 0.00 4.26
775 946 1.739067 AAACGGCAACTATCAGGAGC 58.261 50.000 0.00 0.00 0.00 4.70
776 947 3.751175 TGAAAAACGGCAACTATCAGGAG 59.249 43.478 0.00 0.00 0.00 3.69
777 948 3.500680 GTGAAAAACGGCAACTATCAGGA 59.499 43.478 0.00 0.00 0.00 3.86
814 985 0.944311 CAGGTTGAGTCGAACCACCG 60.944 60.000 19.93 9.23 46.94 4.94
825 996 2.159653 GCGTTAATCTGTGCAGGTTGAG 60.160 50.000 7.87 1.23 33.15 3.02
837 1008 2.342910 AACAGACGTCGCGTTAATCT 57.657 45.000 20.41 2.37 41.37 2.40
841 1012 1.529622 CGGATAACAGACGTCGCGTTA 60.530 52.381 25.64 25.64 41.37 3.18
844 1015 0.316772 ATCGGATAACAGACGTCGCG 60.317 55.000 10.46 0.00 0.00 5.87
848 1019 1.771565 TGGGATCGGATAACAGACGT 58.228 50.000 0.00 0.00 0.00 4.34
866 1037 0.254178 CTGGTCAACAGGGGAGGATG 59.746 60.000 0.00 0.00 43.70 3.51
883 1054 1.153862 GCACTCGAGAGCTGTCCTG 60.154 63.158 25.08 9.10 0.00 3.86
895 1076 0.176680 AGGAGCATGGTTAGCACTCG 59.823 55.000 0.00 0.00 0.00 4.18
952 1133 2.962253 CCGATCGAAGCCGCCTTC 60.962 66.667 18.66 0.00 43.23 3.46
969 1150 8.731605 CCCTTTCCAAAGTTTCTAATCTCTAAC 58.268 37.037 0.00 0.00 34.20 2.34
971 1152 8.214721 TCCCTTTCCAAAGTTTCTAATCTCTA 57.785 34.615 0.00 0.00 34.20 2.43
972 1153 7.091533 TCCCTTTCCAAAGTTTCTAATCTCT 57.908 36.000 0.00 0.00 34.20 3.10
988 1171 1.738346 GCCGCCATGATTCCCTTTCC 61.738 60.000 0.00 0.00 0.00 3.13
991 1174 2.343475 ATCGCCGCCATGATTCCCTT 62.343 55.000 0.00 0.00 0.00 3.95
994 1177 1.572085 CTCATCGCCGCCATGATTCC 61.572 60.000 0.82 0.00 29.78 3.01
1251 1443 4.286291 TGCATAGATCAGCATCTCCATCTT 59.714 41.667 3.74 0.00 40.18 2.40
1269 1461 4.221530 TGCCAATTAACCATGGATGCATA 58.778 39.130 21.47 0.30 39.12 3.14
1348 1540 5.266733 AGCAAAAGTTCAAGATCAAGCAA 57.733 34.783 0.00 0.00 0.00 3.91
1406 1607 5.429130 AGGGAAGGATCAAACGAACTAATC 58.571 41.667 0.00 0.00 0.00 1.75
1407 1608 5.437191 AGGGAAGGATCAAACGAACTAAT 57.563 39.130 0.00 0.00 0.00 1.73
1408 1609 4.903045 AGGGAAGGATCAAACGAACTAA 57.097 40.909 0.00 0.00 0.00 2.24
1409 1610 4.903045 AAGGGAAGGATCAAACGAACTA 57.097 40.909 0.00 0.00 0.00 2.24
1414 1615 5.009610 TCAAGAAAAAGGGAAGGATCAAACG 59.990 40.000 0.00 0.00 0.00 3.60
1426 1627 3.756434 TCTACGGCAATCAAGAAAAAGGG 59.244 43.478 0.00 0.00 0.00 3.95
1428 1629 6.524586 GTCATTCTACGGCAATCAAGAAAAAG 59.475 38.462 0.00 0.00 32.13 2.27
1442 1643 2.758979 AGTAGGTGGTGTCATTCTACGG 59.241 50.000 0.00 0.00 37.46 4.02
1445 1650 3.446161 CCGAAGTAGGTGGTGTCATTCTA 59.554 47.826 0.00 0.00 0.00 2.10
2125 2359 0.602905 CGTCGCCCTTGAGGAAGTTT 60.603 55.000 0.00 0.00 38.24 2.66
2155 2389 3.338126 CTTCTCGTACACGGCGCCT 62.338 63.158 26.68 8.66 40.29 5.52
2344 2582 8.948631 ACTGCTACGTACTACTACTAACATAA 57.051 34.615 0.00 0.00 0.00 1.90
2345 2583 9.684448 CTACTGCTACGTACTACTACTAACATA 57.316 37.037 0.00 0.00 0.00 2.29
2387 2631 3.367600 GCAACATGCATGATTCCAAGTCA 60.368 43.478 32.75 0.00 44.26 3.41
2388 2632 3.184541 GCAACATGCATGATTCCAAGTC 58.815 45.455 32.75 7.31 44.26 3.01
2389 2633 3.241067 GCAACATGCATGATTCCAAGT 57.759 42.857 32.75 4.93 44.26 3.16
2419 2663 4.508052 CGGCCGTAACGTAATGTTTATTC 58.492 43.478 19.50 0.00 42.09 1.75
2448 2692 1.537776 GCGAGACATGACATGAGGGAG 60.538 57.143 22.19 9.69 0.00 4.30
2449 2693 0.461548 GCGAGACATGACATGAGGGA 59.538 55.000 22.19 0.00 0.00 4.20
2495 2740 1.376683 CTCCCCGAATCGGCAACAA 60.377 57.895 17.50 0.00 46.86 2.83
2506 2751 3.209812 CGATGACGAGCTCCCCGA 61.210 66.667 8.47 0.00 42.66 5.14
2545 2790 0.244994 CTGAACAGAGGAGGACACGG 59.755 60.000 0.00 0.00 0.00 4.94
2546 2791 1.248486 TCTGAACAGAGGAGGACACG 58.752 55.000 0.00 0.00 32.82 4.49
2555 2800 5.013984 TGGATGCCCATCTCTGAACAGAG 62.014 52.174 21.46 21.46 45.60 3.35
2557 2802 1.211212 TGGATGCCCATCTCTGAACAG 59.789 52.381 8.06 0.00 37.58 3.16
2589 2840 3.120304 GGAGGAAGTACAATTGACGTTGC 60.120 47.826 13.59 7.08 32.32 4.17
2592 2843 2.904434 AGGGAGGAAGTACAATTGACGT 59.096 45.455 13.59 4.40 0.00 4.34
2593 2844 3.522553 GAGGGAGGAAGTACAATTGACG 58.477 50.000 13.59 0.00 0.00 4.35
2594 2845 3.522553 CGAGGGAGGAAGTACAATTGAC 58.477 50.000 13.59 6.20 0.00 3.18
2595 2846 2.500098 CCGAGGGAGGAAGTACAATTGA 59.500 50.000 13.59 0.00 0.00 2.57
2596 2847 2.500098 TCCGAGGGAGGAAGTACAATTG 59.500 50.000 3.24 3.24 37.36 2.32
2598 2849 2.544844 TCCGAGGGAGGAAGTACAAT 57.455 50.000 0.00 0.00 37.36 2.71
2600 2851 3.497332 CATATCCGAGGGAGGAAGTACA 58.503 50.000 0.00 0.00 44.50 2.90
2601 2852 2.826725 CCATATCCGAGGGAGGAAGTAC 59.173 54.545 0.00 0.00 44.50 2.73
2602 2853 2.720254 TCCATATCCGAGGGAGGAAGTA 59.280 50.000 0.00 0.00 44.50 2.24
2603 2854 1.503784 TCCATATCCGAGGGAGGAAGT 59.496 52.381 0.00 0.00 44.50 3.01
2606 2857 1.433199 ACATCCATATCCGAGGGAGGA 59.567 52.381 0.00 0.00 42.41 3.71
2607 2858 1.944177 ACATCCATATCCGAGGGAGG 58.056 55.000 0.00 0.00 42.54 4.30
2609 2860 4.609866 AGATACATCCATATCCGAGGGA 57.390 45.455 0.00 0.00 43.68 4.20
2610 2861 5.201243 TGTAGATACATCCATATCCGAGGG 58.799 45.833 0.00 0.00 32.76 4.30
2611 2862 6.775594 TTGTAGATACATCCATATCCGAGG 57.224 41.667 0.00 0.00 35.89 4.63
2637 2888 9.978044 GGAAATAGATGTACCTAGACGTATTTT 57.022 33.333 0.00 0.00 0.00 1.82
2638 2889 8.295288 CGGAAATAGATGTACCTAGACGTATTT 58.705 37.037 0.00 0.00 0.00 1.40
2639 2890 7.574592 GCGGAAATAGATGTACCTAGACGTATT 60.575 40.741 0.00 0.00 0.00 1.89
2640 2891 6.128063 GCGGAAATAGATGTACCTAGACGTAT 60.128 42.308 0.00 0.00 0.00 3.06
2641 2892 5.180117 GCGGAAATAGATGTACCTAGACGTA 59.820 44.000 0.00 0.00 0.00 3.57
2642 2893 4.023365 GCGGAAATAGATGTACCTAGACGT 60.023 45.833 0.00 0.00 0.00 4.34
2643 2894 4.474113 GCGGAAATAGATGTACCTAGACG 58.526 47.826 0.00 0.00 0.00 4.18
2644 2895 4.214971 TCGCGGAAATAGATGTACCTAGAC 59.785 45.833 6.13 0.00 0.00 2.59
2645 2896 4.214971 GTCGCGGAAATAGATGTACCTAGA 59.785 45.833 6.13 0.00 0.00 2.43
2646 2897 4.023450 TGTCGCGGAAATAGATGTACCTAG 60.023 45.833 6.13 0.00 0.00 3.02
2647 2898 3.884693 TGTCGCGGAAATAGATGTACCTA 59.115 43.478 6.13 0.00 0.00 3.08
2648 2899 2.691526 TGTCGCGGAAATAGATGTACCT 59.308 45.455 6.13 0.00 0.00 3.08
2649 2900 3.088194 TGTCGCGGAAATAGATGTACC 57.912 47.619 6.13 0.00 0.00 3.34
2650 2901 4.110482 ACTTGTCGCGGAAATAGATGTAC 58.890 43.478 6.13 0.00 0.00 2.90
2651 2902 4.380841 ACTTGTCGCGGAAATAGATGTA 57.619 40.909 6.13 0.00 0.00 2.29
2652 2903 3.247006 ACTTGTCGCGGAAATAGATGT 57.753 42.857 6.13 0.00 0.00 3.06
2653 2904 5.907197 ATTACTTGTCGCGGAAATAGATG 57.093 39.130 6.13 0.00 0.00 2.90
2654 2905 5.465724 GGAATTACTTGTCGCGGAAATAGAT 59.534 40.000 6.13 0.00 0.00 1.98
2655 2906 4.807304 GGAATTACTTGTCGCGGAAATAGA 59.193 41.667 6.13 0.00 0.00 1.98
2656 2907 4.569162 TGGAATTACTTGTCGCGGAAATAG 59.431 41.667 6.13 0.00 0.00 1.73
2657 2908 4.505808 TGGAATTACTTGTCGCGGAAATA 58.494 39.130 6.13 0.00 0.00 1.40
2658 2909 3.340034 TGGAATTACTTGTCGCGGAAAT 58.660 40.909 6.13 0.00 0.00 2.17
2659 2910 2.768698 TGGAATTACTTGTCGCGGAAA 58.231 42.857 6.13 0.00 0.00 3.13
2660 2911 2.459060 TGGAATTACTTGTCGCGGAA 57.541 45.000 6.13 0.00 0.00 4.30
2661 2912 2.459060 TTGGAATTACTTGTCGCGGA 57.541 45.000 6.13 0.00 0.00 5.54
2662 2913 2.723618 CGTTTGGAATTACTTGTCGCGG 60.724 50.000 6.13 0.00 0.00 6.46
2663 2914 2.492001 CGTTTGGAATTACTTGTCGCG 58.508 47.619 0.00 0.00 0.00 5.87
2664 2915 2.481185 TCCGTTTGGAATTACTTGTCGC 59.519 45.455 0.00 0.00 42.85 5.19
2665 2916 3.991773 TCTCCGTTTGGAATTACTTGTCG 59.008 43.478 0.00 0.00 45.87 4.35
2666 2917 5.235516 TCTCTCCGTTTGGAATTACTTGTC 58.764 41.667 0.00 0.00 45.87 3.18
2667 2918 5.221661 ACTCTCTCCGTTTGGAATTACTTGT 60.222 40.000 0.00 0.00 45.87 3.16
2668 2919 5.238583 ACTCTCTCCGTTTGGAATTACTTG 58.761 41.667 0.00 0.00 45.87 3.16
2669 2920 5.485209 ACTCTCTCCGTTTGGAATTACTT 57.515 39.130 0.00 0.00 45.87 2.24
2670 2921 6.608002 AGATACTCTCTCCGTTTGGAATTACT 59.392 38.462 0.00 0.00 45.87 2.24
2671 2922 6.807789 AGATACTCTCTCCGTTTGGAATTAC 58.192 40.000 0.00 0.00 45.87 1.89
2672 2923 6.238676 CGAGATACTCTCTCCGTTTGGAATTA 60.239 42.308 2.92 0.00 46.63 1.40
2673 2924 5.450688 CGAGATACTCTCTCCGTTTGGAATT 60.451 44.000 2.92 0.00 46.63 2.17
2674 2925 4.036971 CGAGATACTCTCTCCGTTTGGAAT 59.963 45.833 2.92 0.00 46.63 3.01
2675 2926 3.377485 CGAGATACTCTCTCCGTTTGGAA 59.623 47.826 2.92 0.00 46.63 3.53
2676 2927 2.943690 CGAGATACTCTCTCCGTTTGGA 59.056 50.000 2.92 0.00 46.63 3.53
2677 2928 2.541999 GCGAGATACTCTCTCCGTTTGG 60.542 54.545 2.92 0.00 46.63 3.28
2678 2929 2.097629 TGCGAGATACTCTCTCCGTTTG 59.902 50.000 2.92 0.00 46.63 2.93
2679 2930 2.097791 GTGCGAGATACTCTCTCCGTTT 59.902 50.000 2.92 0.00 46.63 3.60
2680 2931 1.671845 GTGCGAGATACTCTCTCCGTT 59.328 52.381 2.92 0.00 46.63 4.44
2681 2932 1.134340 AGTGCGAGATACTCTCTCCGT 60.134 52.381 2.92 0.00 46.63 4.69
2682 2933 1.262950 CAGTGCGAGATACTCTCTCCG 59.737 57.143 2.92 0.00 46.63 4.63
2683 2934 1.001815 GCAGTGCGAGATACTCTCTCC 60.002 57.143 0.00 0.00 46.63 3.71
2684 2935 1.001815 GGCAGTGCGAGATACTCTCTC 60.002 57.143 9.45 0.00 45.98 3.20
2685 2936 1.028905 GGCAGTGCGAGATACTCTCT 58.971 55.000 9.45 0.00 41.26 3.10
2686 2937 1.028905 AGGCAGTGCGAGATACTCTC 58.971 55.000 9.45 0.00 40.06 3.20
2687 2938 1.950909 GTAGGCAGTGCGAGATACTCT 59.049 52.381 9.45 0.03 0.00 3.24
2688 2939 1.950909 AGTAGGCAGTGCGAGATACTC 59.049 52.381 9.45 0.00 0.00 2.59
2689 2940 2.060050 AGTAGGCAGTGCGAGATACT 57.940 50.000 9.45 11.36 0.00 2.12
2690 2941 3.754323 AGATAGTAGGCAGTGCGAGATAC 59.246 47.826 9.45 9.32 0.00 2.24
2691 2942 4.022413 AGATAGTAGGCAGTGCGAGATA 57.978 45.455 9.45 0.05 0.00 1.98
2692 2943 2.870175 AGATAGTAGGCAGTGCGAGAT 58.130 47.619 9.45 0.00 0.00 2.75
2693 2944 2.350057 AGATAGTAGGCAGTGCGAGA 57.650 50.000 9.45 0.00 0.00 4.04
2694 2945 2.603412 CGAAGATAGTAGGCAGTGCGAG 60.603 54.545 9.45 0.00 0.00 5.03
2695 2946 1.333931 CGAAGATAGTAGGCAGTGCGA 59.666 52.381 9.45 0.00 0.00 5.10
2696 2947 1.065701 ACGAAGATAGTAGGCAGTGCG 59.934 52.381 9.45 0.00 0.00 5.34
2697 2948 2.359531 AGACGAAGATAGTAGGCAGTGC 59.640 50.000 6.55 6.55 0.00 4.40
2698 2949 3.003897 GGAGACGAAGATAGTAGGCAGTG 59.996 52.174 0.00 0.00 0.00 3.66
2699 2950 3.215975 GGAGACGAAGATAGTAGGCAGT 58.784 50.000 0.00 0.00 0.00 4.40
2700 2951 2.554893 GGGAGACGAAGATAGTAGGCAG 59.445 54.545 0.00 0.00 0.00 4.85
2701 2952 2.584236 GGGAGACGAAGATAGTAGGCA 58.416 52.381 0.00 0.00 0.00 4.75
2702 2953 1.887854 GGGGAGACGAAGATAGTAGGC 59.112 57.143 0.00 0.00 0.00 3.93
2703 2954 3.225177 TGGGGAGACGAAGATAGTAGG 57.775 52.381 0.00 0.00 0.00 3.18
2704 2955 5.074115 AGATTGGGGAGACGAAGATAGTAG 58.926 45.833 0.00 0.00 0.00 2.57
2705 2956 5.063017 AGATTGGGGAGACGAAGATAGTA 57.937 43.478 0.00 0.00 0.00 1.82
2706 2957 3.917300 AGATTGGGGAGACGAAGATAGT 58.083 45.455 0.00 0.00 0.00 2.12
2707 2958 5.074115 ACTAGATTGGGGAGACGAAGATAG 58.926 45.833 0.00 0.00 0.00 2.08
2708 2959 5.063017 ACTAGATTGGGGAGACGAAGATA 57.937 43.478 0.00 0.00 0.00 1.98
2709 2960 3.892588 GACTAGATTGGGGAGACGAAGAT 59.107 47.826 0.00 0.00 0.00 2.40
2710 2961 3.053544 AGACTAGATTGGGGAGACGAAGA 60.054 47.826 0.00 0.00 0.00 2.87
2713 2964 3.383698 AAGACTAGATTGGGGAGACGA 57.616 47.619 0.00 0.00 0.00 4.20
2729 2980 3.939592 GCCATTGACTTAGGTGGTAAGAC 59.060 47.826 0.00 0.00 40.79 3.01
2738 2989 2.487934 CGGATGAGCCATTGACTTAGG 58.512 52.381 0.00 0.00 35.94 2.69
2740 2991 1.837439 ACCGGATGAGCCATTGACTTA 59.163 47.619 9.46 0.00 35.94 2.24
2741 2992 0.620556 ACCGGATGAGCCATTGACTT 59.379 50.000 9.46 0.00 35.94 3.01
2742 2993 0.179000 GACCGGATGAGCCATTGACT 59.821 55.000 9.46 0.00 35.94 3.41
2743 2994 0.107703 TGACCGGATGAGCCATTGAC 60.108 55.000 9.46 0.00 35.94 3.18
2744 2995 0.107703 GTGACCGGATGAGCCATTGA 60.108 55.000 9.46 0.00 35.94 2.57
2745 2996 0.392863 TGTGACCGGATGAGCCATTG 60.393 55.000 9.46 0.00 35.94 2.82
2746 2997 0.327924 TTGTGACCGGATGAGCCATT 59.672 50.000 9.46 0.00 35.94 3.16
2747 2998 0.548031 ATTGTGACCGGATGAGCCAT 59.452 50.000 9.46 0.00 35.94 4.40
2748 2999 0.107703 GATTGTGACCGGATGAGCCA 60.108 55.000 9.46 0.00 35.94 4.75
2749 3000 0.179000 AGATTGTGACCGGATGAGCC 59.821 55.000 9.46 0.00 0.00 4.70
2750 3001 1.576356 GAGATTGTGACCGGATGAGC 58.424 55.000 9.46 0.00 0.00 4.26
2751 3002 1.202580 GGGAGATTGTGACCGGATGAG 60.203 57.143 9.46 0.00 0.00 2.90
2752 3003 0.830648 GGGAGATTGTGACCGGATGA 59.169 55.000 9.46 0.00 0.00 2.92
2753 3004 0.833287 AGGGAGATTGTGACCGGATG 59.167 55.000 9.46 0.00 0.00 3.51
2754 3005 1.486726 GAAGGGAGATTGTGACCGGAT 59.513 52.381 9.46 0.00 0.00 4.18
2755 3006 0.902531 GAAGGGAGATTGTGACCGGA 59.097 55.000 9.46 0.00 0.00 5.14
2756 3007 0.905357 AGAAGGGAGATTGTGACCGG 59.095 55.000 0.00 0.00 0.00 5.28
2757 3008 2.761208 AGTAGAAGGGAGATTGTGACCG 59.239 50.000 0.00 0.00 0.00 4.79
2758 3009 3.680196 GCAGTAGAAGGGAGATTGTGACC 60.680 52.174 0.00 0.00 0.00 4.02
2759 3010 3.526534 GCAGTAGAAGGGAGATTGTGAC 58.473 50.000 0.00 0.00 0.00 3.67
2760 3011 2.501723 GGCAGTAGAAGGGAGATTGTGA 59.498 50.000 0.00 0.00 0.00 3.58
2761 3012 2.237143 TGGCAGTAGAAGGGAGATTGTG 59.763 50.000 0.00 0.00 0.00 3.33
2762 3013 2.237392 GTGGCAGTAGAAGGGAGATTGT 59.763 50.000 0.00 0.00 0.00 2.71
2763 3014 2.420687 GGTGGCAGTAGAAGGGAGATTG 60.421 54.545 0.00 0.00 0.00 2.67
2764 3015 1.840635 GGTGGCAGTAGAAGGGAGATT 59.159 52.381 0.00 0.00 0.00 2.40
2765 3016 1.501582 GGTGGCAGTAGAAGGGAGAT 58.498 55.000 0.00 0.00 0.00 2.75
2766 3017 0.617820 GGGTGGCAGTAGAAGGGAGA 60.618 60.000 0.00 0.00 0.00 3.71
2787 3038 4.808364 TGTGCTTTAAATTCAAAGTGTGCC 59.192 37.500 3.04 0.00 37.74 5.01
2788 3039 5.290643 TGTGTGCTTTAAATTCAAAGTGTGC 59.709 36.000 3.04 0.00 37.74 4.57
2808 3059 1.105457 ACACAGCTGCACAATTGTGT 58.895 45.000 33.01 16.03 46.62 3.72
2811 3062 5.032220 CACATATACACAGCTGCACAATTG 58.968 41.667 15.27 3.24 0.00 2.32
2816 3067 4.183865 TCTTCACATATACACAGCTGCAC 58.816 43.478 15.27 0.00 0.00 4.57
2822 3073 8.729756 TGTTTTGGAATCTTCACATATACACAG 58.270 33.333 0.00 0.00 0.00 3.66
2847 3098 7.114388 GCCCTTACATACGTTTTTCTTTTTCTG 59.886 37.037 0.00 0.00 0.00 3.02
2850 3101 6.807789 TGCCCTTACATACGTTTTTCTTTTT 58.192 32.000 0.00 0.00 0.00 1.94
2950 3234 3.228188 TCAGGTCCATTTTGTGAGCTT 57.772 42.857 0.00 0.00 0.00 3.74
3004 3288 3.281727 TGTTCAAGAGGCACACTTTCT 57.718 42.857 0.00 0.00 37.08 2.52
3045 3329 7.385778 AGCATTTAACTACCGATTTGCTTAA 57.614 32.000 0.00 0.00 35.81 1.85
3112 3396 5.125417 GCTCTATGCAAAGGATGGTGTAAAA 59.875 40.000 0.00 0.00 42.31 1.52
3135 3433 1.295792 TATTGGGCGAAGACGAATGC 58.704 50.000 0.00 0.00 45.62 3.56
3163 3461 3.348236 GCTGCCAAGCCATATCGG 58.652 61.111 0.00 0.00 44.22 4.18
3269 3567 6.040166 CACATCTCCTTCCTCCAATAAAATGG 59.960 42.308 0.00 0.00 42.12 3.16
3273 3575 5.626809 CGTCACATCTCCTTCCTCCAATAAA 60.627 44.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.