Multiple sequence alignment - TraesCS3A01G408200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G408200 chr3A 100.000 4420 0 0 1 4420 653306881 653302462 0.000000e+00 8163.0
1 TraesCS3A01G408200 chr3A 97.254 692 16 2 3729 4420 502917469 502918157 0.000000e+00 1170.0
2 TraesCS3A01G408200 chr3A 95.965 694 23 3 3730 4420 740716636 740715945 0.000000e+00 1122.0
3 TraesCS3A01G408200 chr3A 95.965 694 23 3 3730 4420 740747388 740746697 0.000000e+00 1122.0
4 TraesCS3A01G408200 chr3A 95.960 693 23 3 3731 4420 20905422 20906112 0.000000e+00 1120.0
5 TraesCS3A01G408200 chr3A 95.533 694 26 3 3730 4420 740684888 740684197 0.000000e+00 1105.0
6 TraesCS3A01G408200 chr3A 81.053 95 15 3 280 373 74675110 74675018 6.130000e-09 73.1
7 TraesCS3A01G408200 chr3A 96.774 31 1 0 210 240 705930055 705930085 8.000000e-03 52.8
8 TraesCS3A01G408200 chr3B 82.935 1424 126 73 576 1966 681177902 681176563 0.000000e+00 1175.0
9 TraesCS3A01G408200 chr3B 91.020 657 38 15 2335 2983 681176265 681175622 0.000000e+00 867.0
10 TraesCS3A01G408200 chr3B 89.221 603 24 14 3150 3729 681175260 681174676 0.000000e+00 715.0
11 TraesCS3A01G408200 chr3B 89.007 282 12 7 1999 2261 681176565 681176284 9.160000e-87 331.0
12 TraesCS3A01G408200 chr3B 90.278 144 7 3 2971 3107 681175600 681175457 9.770000e-42 182.0
13 TraesCS3A01G408200 chr2A 94.949 693 30 3 3731 4420 773355392 773356082 0.000000e+00 1081.0
14 TraesCS3A01G408200 chr2A 96.774 31 1 0 210 240 766446209 766446239 8.000000e-03 52.8
15 TraesCS3A01G408200 chr3D 88.686 875 63 23 445 1307 517288788 517287938 0.000000e+00 1035.0
16 TraesCS3A01G408200 chr3D 93.719 605 24 7 2354 2947 517286891 517286290 0.000000e+00 894.0
17 TraesCS3A01G408200 chr3D 86.815 675 34 23 3068 3730 517286197 517285566 0.000000e+00 702.0
18 TraesCS3A01G408200 chr3D 79.400 500 48 35 1475 1966 517287703 517287251 7.180000e-78 302.0
19 TraesCS3A01G408200 chr3D 88.696 230 16 6 2029 2248 517287186 517286957 5.630000e-69 272.0
20 TraesCS3A01G408200 chr3D 78.552 373 49 20 1 348 517289170 517288804 2.680000e-52 217.0
21 TraesCS3A01G408200 chr7D 92.034 703 42 8 3730 4420 20336746 20337446 0.000000e+00 976.0
22 TraesCS3A01G408200 chr7D 90.638 705 50 11 3729 4420 53624051 53623350 0.000000e+00 922.0
23 TraesCS3A01G408200 chr5D 91.571 700 45 8 3733 4420 425071837 425071140 0.000000e+00 953.0
24 TraesCS3A01G408200 chr1A 80.405 296 49 7 2364 2653 460861513 460861221 2.680000e-52 217.0
25 TraesCS3A01G408200 chr1A 88.722 133 13 2 2750 2881 460861121 460860990 1.270000e-35 161.0
26 TraesCS3A01G408200 chr1A 89.423 104 6 4 3171 3270 460860569 460860467 4.640000e-25 126.0
27 TraesCS3A01G408200 chr1D 79.661 295 53 6 2364 2653 361152553 361152261 5.790000e-49 206.0
28 TraesCS3A01G408200 chr1D 88.722 133 13 2 2750 2881 361152165 361152034 1.270000e-35 161.0
29 TraesCS3A01G408200 chr1B 78.912 294 53 7 2364 2651 483588624 483588334 1.620000e-44 191.0
30 TraesCS3A01G408200 chr1B 88.889 135 13 2 2750 2883 483588236 483588103 9.840000e-37 165.0
31 TraesCS3A01G408200 chr6B 84.472 161 12 7 2715 2872 248526164 248526314 3.560000e-31 147.0
32 TraesCS3A01G408200 chr5A 83.439 157 15 6 2721 2875 179212966 179212819 7.710000e-28 135.0
33 TraesCS3A01G408200 chr7B 82.609 138 11 7 2715 2849 701399556 701399683 4.670000e-20 110.0
34 TraesCS3A01G408200 chr2B 82.609 138 11 7 2715 2849 76549378 76549505 4.670000e-20 110.0
35 TraesCS3A01G408200 chr5B 80.519 77 15 0 297 373 467383109 467383033 4.770000e-05 60.2
36 TraesCS3A01G408200 chr2D 100.000 30 0 0 210 239 490118828 490118799 6.180000e-04 56.5
37 TraesCS3A01G408200 chrUn 100.000 28 0 0 213 240 96941057 96941030 8.000000e-03 52.8
38 TraesCS3A01G408200 chrUn 100.000 28 0 0 213 240 356065021 356065048 8.000000e-03 52.8
39 TraesCS3A01G408200 chrUn 100.000 28 0 0 213 240 419940967 419940994 8.000000e-03 52.8
40 TraesCS3A01G408200 chr7A 100.000 28 0 0 213 240 679361286 679361259 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G408200 chr3A 653302462 653306881 4419 True 8163.000000 8163 100.0000 1 4420 1 chr3A.!!$R2 4419
1 TraesCS3A01G408200 chr3A 502917469 502918157 688 False 1170.000000 1170 97.2540 3729 4420 1 chr3A.!!$F2 691
2 TraesCS3A01G408200 chr3A 740715945 740716636 691 True 1122.000000 1122 95.9650 3730 4420 1 chr3A.!!$R4 690
3 TraesCS3A01G408200 chr3A 740746697 740747388 691 True 1122.000000 1122 95.9650 3730 4420 1 chr3A.!!$R5 690
4 TraesCS3A01G408200 chr3A 20905422 20906112 690 False 1120.000000 1120 95.9600 3731 4420 1 chr3A.!!$F1 689
5 TraesCS3A01G408200 chr3A 740684197 740684888 691 True 1105.000000 1105 95.5330 3730 4420 1 chr3A.!!$R3 690
6 TraesCS3A01G408200 chr3B 681174676 681177902 3226 True 654.000000 1175 88.4922 576 3729 5 chr3B.!!$R1 3153
7 TraesCS3A01G408200 chr2A 773355392 773356082 690 False 1081.000000 1081 94.9490 3731 4420 1 chr2A.!!$F2 689
8 TraesCS3A01G408200 chr3D 517285566 517289170 3604 True 570.333333 1035 85.9780 1 3730 6 chr3D.!!$R1 3729
9 TraesCS3A01G408200 chr7D 20336746 20337446 700 False 976.000000 976 92.0340 3730 4420 1 chr7D.!!$F1 690
10 TraesCS3A01G408200 chr7D 53623350 53624051 701 True 922.000000 922 90.6380 3729 4420 1 chr7D.!!$R1 691
11 TraesCS3A01G408200 chr5D 425071140 425071837 697 True 953.000000 953 91.5710 3733 4420 1 chr5D.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 791 0.250424 TCCAGCCACACACACATCAG 60.250 55.0 0.00 0.0 0.00 2.90 F
1936 2065 0.035725 TGGATCTGCTGTGCTCTTGG 60.036 55.0 0.00 0.0 0.00 3.61 F
3033 3308 0.179097 GCTCCTAGTCCTTTGAGCGG 60.179 60.0 1.42 0.0 40.61 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2114 0.180642 TGCACGGAAAACTACCCACA 59.819 50.000 0.0 0.0 0.00 4.17 R
3044 3319 0.039472 TTGCATGTGGTGGGCACTAT 59.961 50.000 0.0 0.0 37.26 2.12 R
4320 4851 4.211374 CACGTAAGCAAGCTACTGTTTCTT 59.789 41.667 0.0 0.0 45.62 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.907894 TTGTTCGGCCAAAATGTAGTC 57.092 42.857 2.24 0.00 0.00 2.59
28 29 2.156098 TGTTCGGCCAAAATGTAGTCC 58.844 47.619 2.24 0.00 0.00 3.85
29 30 2.156098 GTTCGGCCAAAATGTAGTCCA 58.844 47.619 2.24 0.00 0.00 4.02
30 31 1.816074 TCGGCCAAAATGTAGTCCAC 58.184 50.000 2.24 0.00 0.00 4.02
54 55 2.247437 GCCGCCGATGAAGACCATC 61.247 63.158 0.00 0.00 46.36 3.51
78 80 0.887933 TGCCTCGATATAGCGCATCA 59.112 50.000 11.47 0.03 0.00 3.07
80 82 1.402852 GCCTCGATATAGCGCATCACA 60.403 52.381 11.47 0.00 0.00 3.58
85 87 2.153817 CGATATAGCGCATCACACACAC 59.846 50.000 11.47 0.00 0.00 3.82
87 89 1.362768 ATAGCGCATCACACACACAG 58.637 50.000 11.47 0.00 0.00 3.66
103 105 3.369147 CACACAGAAATCGACAGGATGAC 59.631 47.826 0.00 0.00 39.69 3.06
110 112 5.600484 AGAAATCGACAGGATGACCTATTCT 59.400 40.000 0.00 0.00 45.94 2.40
115 117 7.177832 TCGACAGGATGACCTATTCTTAAAA 57.822 36.000 0.00 0.00 45.94 1.52
117 119 8.265055 TCGACAGGATGACCTATTCTTAAAAAT 58.735 33.333 0.00 0.00 45.94 1.82
118 120 8.338259 CGACAGGATGACCTATTCTTAAAAATG 58.662 37.037 0.00 0.00 45.94 2.32
122 131 8.636213 AGGATGACCTATTCTTAAAAATGCATG 58.364 33.333 0.00 0.00 45.83 4.06
124 133 9.674824 GATGACCTATTCTTAAAAATGCATGAG 57.325 33.333 0.00 0.00 0.00 2.90
138 147 2.955614 GCATGAGAAATGCAACTGCTT 58.044 42.857 0.00 0.00 44.00 3.91
147 156 7.094075 TGAGAAATGCAACTGCTTGAGATTAAT 60.094 33.333 2.95 0.00 42.66 1.40
185 194 5.528320 TGGAAAAATTTACTTTCGACTCGGT 59.472 36.000 0.00 0.00 34.26 4.69
189 198 7.894376 AAAATTTACTTTCGACTCGGTATCA 57.106 32.000 0.00 0.00 0.00 2.15
190 199 8.488651 AAAATTTACTTTCGACTCGGTATCAT 57.511 30.769 0.00 0.00 0.00 2.45
194 203 8.624701 TTTACTTTCGACTCGGTATCATAAAG 57.375 34.615 0.00 2.32 0.00 1.85
197 206 7.938715 ACTTTCGACTCGGTATCATAAAGTAT 58.061 34.615 9.29 0.00 33.48 2.12
208 217 7.094075 CGGTATCATAAAGTATAGTGCCCTACA 60.094 40.741 0.00 0.00 0.00 2.74
223 232 6.189677 TGCCCTACACAAAGATTAAAATCG 57.810 37.500 0.00 0.00 40.35 3.34
240 249 2.088950 TCGTGGGAGAAACGATTTCC 57.911 50.000 0.00 0.00 44.58 3.13
245 254 1.821216 GGAGAAACGATTTCCCAGCA 58.179 50.000 0.00 0.00 40.54 4.41
250 272 2.717639 AACGATTTCCCAGCAGCTAT 57.282 45.000 0.00 0.00 0.00 2.97
254 276 3.243907 ACGATTTCCCAGCAGCTATAGTC 60.244 47.826 0.00 0.00 0.00 2.59
278 300 1.523711 CATAGTGGGCAATCGCGGT 60.524 57.895 6.13 0.00 39.92 5.68
282 304 0.393808 AGTGGGCAATCGCGGTAATT 60.394 50.000 6.13 0.00 39.92 1.40
286 308 2.190161 GGGCAATCGCGGTAATTTTTC 58.810 47.619 6.13 0.00 39.92 2.29
287 309 2.190161 GGCAATCGCGGTAATTTTTCC 58.810 47.619 6.13 0.00 39.92 3.13
295 317 2.021457 CGGTAATTTTTCCGCTGGGAT 58.979 47.619 0.00 0.00 43.41 3.85
330 352 2.036346 AGGTTGTTGCTGATTTTGGAGC 59.964 45.455 0.00 0.00 35.65 4.70
348 370 4.635765 TGGAGCCGTTTGAAGAGATTTATG 59.364 41.667 0.00 0.00 0.00 1.90
349 371 4.035675 GGAGCCGTTTGAAGAGATTTATGG 59.964 45.833 0.00 0.00 0.00 2.74
351 373 4.878397 AGCCGTTTGAAGAGATTTATGGAG 59.122 41.667 0.00 0.00 0.00 3.86
353 375 5.354234 GCCGTTTGAAGAGATTTATGGAGAA 59.646 40.000 0.00 0.00 0.00 2.87
355 377 7.415653 GCCGTTTGAAGAGATTTATGGAGAAAT 60.416 37.037 0.00 0.00 0.00 2.17
356 378 8.462016 CCGTTTGAAGAGATTTATGGAGAAATT 58.538 33.333 0.00 0.00 0.00 1.82
357 379 9.495754 CGTTTGAAGAGATTTATGGAGAAATTC 57.504 33.333 0.00 0.00 0.00 2.17
358 380 9.495754 GTTTGAAGAGATTTATGGAGAAATTCG 57.504 33.333 0.00 0.00 0.00 3.34
359 381 7.251704 TGAAGAGATTTATGGAGAAATTCGC 57.748 36.000 0.00 0.00 0.00 4.70
360 382 5.914085 AGAGATTTATGGAGAAATTCGCG 57.086 39.130 0.00 0.00 0.00 5.87
361 383 4.752101 AGAGATTTATGGAGAAATTCGCGG 59.248 41.667 6.13 0.00 0.00 6.46
363 385 2.031258 TTATGGAGAAATTCGCGGCA 57.969 45.000 6.13 0.00 0.00 5.69
364 386 1.581934 TATGGAGAAATTCGCGGCAG 58.418 50.000 6.13 0.00 0.00 4.85
365 387 1.718757 ATGGAGAAATTCGCGGCAGC 61.719 55.000 6.13 0.00 40.74 5.25
366 388 2.398554 GGAGAAATTCGCGGCAGCA 61.399 57.895 10.08 0.00 45.49 4.41
367 389 1.501741 GAGAAATTCGCGGCAGCAA 59.498 52.632 10.08 2.93 45.49 3.91
368 390 0.794605 GAGAAATTCGCGGCAGCAAC 60.795 55.000 10.08 0.00 45.49 4.17
369 391 1.801512 GAAATTCGCGGCAGCAACC 60.802 57.895 10.08 0.00 45.49 3.77
370 392 2.470801 GAAATTCGCGGCAGCAACCA 62.471 55.000 10.08 0.00 45.49 3.67
371 393 1.876497 AAATTCGCGGCAGCAACCAT 61.876 50.000 10.08 0.00 45.49 3.55
372 394 1.029408 AATTCGCGGCAGCAACCATA 61.029 50.000 10.08 0.00 45.49 2.74
373 395 0.819259 ATTCGCGGCAGCAACCATAT 60.819 50.000 10.08 0.00 45.49 1.78
374 396 1.713937 TTCGCGGCAGCAACCATATG 61.714 55.000 10.08 0.00 45.49 1.78
375 397 2.179547 CGCGGCAGCAACCATATGA 61.180 57.895 10.08 0.00 45.49 2.15
376 398 1.509644 CGCGGCAGCAACCATATGAT 61.510 55.000 10.08 0.00 45.49 2.45
377 399 1.522668 GCGGCAGCAACCATATGATA 58.477 50.000 3.18 0.00 44.35 2.15
378 400 1.466167 GCGGCAGCAACCATATGATAG 59.534 52.381 3.18 0.00 44.35 2.08
379 401 1.466167 CGGCAGCAACCATATGATAGC 59.534 52.381 3.65 4.76 0.00 2.97
380 402 1.815003 GGCAGCAACCATATGATAGCC 59.185 52.381 3.65 5.19 0.00 3.93
381 403 2.507484 GCAGCAACCATATGATAGCCA 58.493 47.619 3.65 0.00 0.00 4.75
382 404 3.087031 GCAGCAACCATATGATAGCCAT 58.913 45.455 3.65 0.00 39.25 4.40
383 405 3.128242 GCAGCAACCATATGATAGCCATC 59.872 47.826 3.65 0.00 36.71 3.51
384 406 3.373130 CAGCAACCATATGATAGCCATCG 59.627 47.826 3.65 0.00 36.71 3.84
385 407 2.679837 GCAACCATATGATAGCCATCGG 59.320 50.000 3.65 0.00 36.71 4.18
386 408 3.273434 CAACCATATGATAGCCATCGGG 58.727 50.000 3.65 0.00 36.71 5.14
399 421 1.464608 CCATCGGGCTATTTACATGCG 59.535 52.381 0.00 0.00 0.00 4.73
400 422 2.412870 CATCGGGCTATTTACATGCGA 58.587 47.619 0.00 0.00 0.00 5.10
401 423 2.831685 TCGGGCTATTTACATGCGAT 57.168 45.000 0.00 0.00 0.00 4.58
402 424 3.120321 TCGGGCTATTTACATGCGATT 57.880 42.857 0.00 0.00 0.00 3.34
403 425 3.472652 TCGGGCTATTTACATGCGATTT 58.527 40.909 0.00 0.00 0.00 2.17
404 426 3.880490 TCGGGCTATTTACATGCGATTTT 59.120 39.130 0.00 0.00 0.00 1.82
405 427 5.057819 TCGGGCTATTTACATGCGATTTTA 58.942 37.500 0.00 0.00 0.00 1.52
406 428 5.703592 TCGGGCTATTTACATGCGATTTTAT 59.296 36.000 0.00 0.00 0.00 1.40
407 429 6.205853 TCGGGCTATTTACATGCGATTTTATT 59.794 34.615 0.00 0.00 0.00 1.40
408 430 6.861055 CGGGCTATTTACATGCGATTTTATTT 59.139 34.615 0.00 0.00 0.00 1.40
409 431 7.060633 CGGGCTATTTACATGCGATTTTATTTC 59.939 37.037 0.00 0.00 0.00 2.17
410 432 7.060633 GGGCTATTTACATGCGATTTTATTTCG 59.939 37.037 0.00 0.00 39.55 3.46
411 433 7.589954 GGCTATTTACATGCGATTTTATTTCGT 59.410 33.333 0.00 0.00 38.81 3.85
412 434 8.409690 GCTATTTACATGCGATTTTATTTCGTG 58.590 33.333 0.00 0.00 38.81 4.35
413 435 7.678194 ATTTACATGCGATTTTATTTCGTGG 57.322 32.000 0.00 0.00 38.81 4.94
414 436 4.695217 ACATGCGATTTTATTTCGTGGT 57.305 36.364 0.00 0.00 38.81 4.16
415 437 4.658071 ACATGCGATTTTATTTCGTGGTC 58.342 39.130 0.00 0.00 38.81 4.02
416 438 3.750639 TGCGATTTTATTTCGTGGTCC 57.249 42.857 0.00 0.00 38.81 4.46
417 439 3.340034 TGCGATTTTATTTCGTGGTCCT 58.660 40.909 0.00 0.00 38.81 3.85
418 440 4.505808 TGCGATTTTATTTCGTGGTCCTA 58.494 39.130 0.00 0.00 38.81 2.94
419 441 4.330620 TGCGATTTTATTTCGTGGTCCTAC 59.669 41.667 0.00 0.00 38.81 3.18
420 442 4.569564 GCGATTTTATTTCGTGGTCCTACT 59.430 41.667 0.00 0.00 38.81 2.57
421 443 5.750067 GCGATTTTATTTCGTGGTCCTACTA 59.250 40.000 0.00 0.00 38.81 1.82
422 444 6.292008 GCGATTTTATTTCGTGGTCCTACTAC 60.292 42.308 0.00 0.00 38.81 2.73
423 445 6.753279 CGATTTTATTTCGTGGTCCTACTACA 59.247 38.462 0.00 0.00 29.27 2.74
424 446 7.253883 CGATTTTATTTCGTGGTCCTACTACAC 60.254 40.741 0.00 0.00 29.27 2.90
425 447 5.981088 TTATTTCGTGGTCCTACTACACA 57.019 39.130 0.00 0.00 34.91 3.72
426 448 3.648339 TTTCGTGGTCCTACTACACAC 57.352 47.619 0.00 0.00 34.91 3.82
427 449 2.574006 TCGTGGTCCTACTACACACT 57.426 50.000 0.00 0.00 34.91 3.55
428 450 3.701205 TCGTGGTCCTACTACACACTA 57.299 47.619 0.00 0.00 34.91 2.74
429 451 3.338249 TCGTGGTCCTACTACACACTAC 58.662 50.000 0.00 0.00 34.91 2.73
430 452 3.008375 TCGTGGTCCTACTACACACTACT 59.992 47.826 0.00 0.00 34.91 2.57
431 453 3.373439 CGTGGTCCTACTACACACTACTC 59.627 52.174 0.00 0.00 34.91 2.59
432 454 3.693578 GTGGTCCTACTACACACTACTCC 59.306 52.174 0.00 0.00 35.30 3.85
433 455 3.286353 GGTCCTACTACACACTACTCCC 58.714 54.545 0.00 0.00 0.00 4.30
434 456 3.286353 GTCCTACTACACACTACTCCCC 58.714 54.545 0.00 0.00 0.00 4.81
435 457 2.092753 TCCTACTACACACTACTCCCCG 60.093 54.545 0.00 0.00 0.00 5.73
436 458 2.092753 CCTACTACACACTACTCCCCGA 60.093 54.545 0.00 0.00 0.00 5.14
437 459 2.592102 ACTACACACTACTCCCCGAA 57.408 50.000 0.00 0.00 0.00 4.30
438 460 3.097342 ACTACACACTACTCCCCGAAT 57.903 47.619 0.00 0.00 0.00 3.34
439 461 3.438183 ACTACACACTACTCCCCGAATT 58.562 45.455 0.00 0.00 0.00 2.17
440 462 4.603131 ACTACACACTACTCCCCGAATTA 58.397 43.478 0.00 0.00 0.00 1.40
441 463 5.018809 ACTACACACTACTCCCCGAATTAA 58.981 41.667 0.00 0.00 0.00 1.40
442 464 4.895668 ACACACTACTCCCCGAATTAAA 57.104 40.909 0.00 0.00 0.00 1.52
443 465 5.231702 ACACACTACTCCCCGAATTAAAA 57.768 39.130 0.00 0.00 0.00 1.52
457 479 7.414762 CCCCGAATTAAAATCACGACACTTATT 60.415 37.037 0.00 0.00 0.00 1.40
458 480 8.605746 CCCGAATTAAAATCACGACACTTATTA 58.394 33.333 0.00 0.00 0.00 0.98
515 537 5.003804 GCCTTGTACCGATGGATTAATGAT 58.996 41.667 0.00 0.00 0.00 2.45
516 538 5.106555 GCCTTGTACCGATGGATTAATGATG 60.107 44.000 0.00 0.00 0.00 3.07
517 539 5.997746 CCTTGTACCGATGGATTAATGATGT 59.002 40.000 0.00 0.00 0.00 3.06
518 540 7.158697 CCTTGTACCGATGGATTAATGATGTA 58.841 38.462 0.00 0.00 0.00 2.29
519 541 7.117812 CCTTGTACCGATGGATTAATGATGTAC 59.882 40.741 0.00 0.00 0.00 2.90
520 542 7.297936 TGTACCGATGGATTAATGATGTACT 57.702 36.000 0.00 0.00 0.00 2.73
526 548 7.306213 CGATGGATTAATGATGTACTCGTACT 58.694 38.462 8.51 0.00 37.00 2.73
530 552 8.027189 TGGATTAATGATGTACTCGTACTATGC 58.973 37.037 8.51 0.00 37.00 3.14
536 558 2.947652 TGTACTCGTACTATGCACTCCC 59.052 50.000 8.51 0.00 37.00 4.30
538 560 2.025155 ACTCGTACTATGCACTCCCTG 58.975 52.381 0.00 0.00 0.00 4.45
572 602 2.033299 ACATTTTTGACAGAGTGCGTGG 59.967 45.455 0.00 0.00 0.00 4.94
670 700 7.418840 AGATAAGCTCGAAATGAATAAGCAG 57.581 36.000 0.00 0.00 35.42 4.24
675 705 2.092429 TCGAAATGAATAAGCAGGCCCT 60.092 45.455 0.00 0.00 0.00 5.19
702 732 0.752054 CATCCTGCTCACCTCTCTCC 59.248 60.000 0.00 0.00 0.00 3.71
705 735 1.516892 CTGCTCACCTCTCTCCTGC 59.483 63.158 0.00 0.00 0.00 4.85
723 758 3.886505 CCTGCTCCCTATATATCGTCTCC 59.113 52.174 0.00 0.00 0.00 3.71
732 767 1.179814 ATATCGTCTCCCGCACCTCC 61.180 60.000 0.00 0.00 36.19 4.30
735 770 3.827898 GTCTCCCGCACCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
746 781 2.997315 CTCCTCGGTCCAGCCACA 60.997 66.667 0.00 0.00 36.97 4.17
747 782 3.302347 CTCCTCGGTCCAGCCACAC 62.302 68.421 0.00 0.00 36.97 3.82
748 783 3.625897 CCTCGGTCCAGCCACACA 61.626 66.667 0.00 0.00 36.97 3.72
749 784 2.357517 CTCGGTCCAGCCACACAC 60.358 66.667 0.00 0.00 36.97 3.82
750 785 3.157949 TCGGTCCAGCCACACACA 61.158 61.111 0.00 0.00 36.97 3.72
751 786 2.972505 CGGTCCAGCCACACACAC 60.973 66.667 0.00 0.00 36.97 3.82
752 787 2.191908 GGTCCAGCCACACACACA 59.808 61.111 0.00 0.00 37.17 3.72
753 788 1.228245 GGTCCAGCCACACACACAT 60.228 57.895 0.00 0.00 37.17 3.21
754 789 1.237285 GGTCCAGCCACACACACATC 61.237 60.000 0.00 0.00 37.17 3.06
755 790 0.534877 GTCCAGCCACACACACATCA 60.535 55.000 0.00 0.00 0.00 3.07
756 791 0.250424 TCCAGCCACACACACATCAG 60.250 55.000 0.00 0.00 0.00 2.90
757 792 0.535780 CCAGCCACACACACATCAGT 60.536 55.000 0.00 0.00 0.00 3.41
774 809 2.165301 GTACATCACCGCAGACGCC 61.165 63.158 0.00 0.00 38.22 5.68
826 862 3.788766 GTGTTGCCTAGCGCGGTG 61.789 66.667 23.02 10.84 42.08 4.94
883 919 2.433838 CAGCTGAGTGCCCGAGTG 60.434 66.667 8.42 0.00 44.23 3.51
885 921 4.385405 GCTGAGTGCCCGAGTGCT 62.385 66.667 0.00 0.00 35.15 4.40
886 922 2.125753 CTGAGTGCCCGAGTGCTC 60.126 66.667 0.00 0.00 0.00 4.26
887 923 3.655810 CTGAGTGCCCGAGTGCTCC 62.656 68.421 0.00 0.00 0.00 4.70
888 924 3.386237 GAGTGCCCGAGTGCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
889 925 3.363844 GAGTGCCCGAGTGCTCCTC 62.364 68.421 0.00 0.00 36.80 3.71
890 926 3.386237 GTGCCCGAGTGCTCCTCT 61.386 66.667 3.10 0.00 38.11 3.69
891 927 3.385384 TGCCCGAGTGCTCCTCTG 61.385 66.667 3.10 0.00 38.11 3.35
905 941 2.507886 CTCCTCTGTCCTCTGTCCTCTA 59.492 54.545 0.00 0.00 0.00 2.43
926 962 1.150536 CTCCTCCCCTCTCCTCTCG 59.849 68.421 0.00 0.00 0.00 4.04
959 1000 4.668138 AGGATAGATAGACCTCACCTCC 57.332 50.000 0.00 0.00 0.00 4.30
967 1008 2.041405 CCTCACCTCCCCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
987 1029 2.983592 CCACCGTGTTCTTGGGGC 60.984 66.667 0.00 0.00 0.00 5.80
1102 1147 5.263948 GCGTTCTTTTCTTCGTCTTCTTTT 58.736 37.500 0.00 0.00 0.00 2.27
1103 1148 5.169738 GCGTTCTTTTCTTCGTCTTCTTTTG 59.830 40.000 0.00 0.00 0.00 2.44
1196 1241 2.267961 CCGGTGTAAGTGCTCCCC 59.732 66.667 0.00 0.00 0.00 4.81
1220 1265 1.382522 GCATCGCCTCCTTGATTTCA 58.617 50.000 0.00 0.00 0.00 2.69
1233 1279 7.597743 CCTCCTTGATTTCATCTGTTTTCTTTG 59.402 37.037 0.00 0.00 0.00 2.77
1236 1282 5.540911 TGATTTCATCTGTTTTCTTTGGCC 58.459 37.500 0.00 0.00 0.00 5.36
1248 1294 0.603707 CTTTGGCCGAGCTCTTGTGA 60.604 55.000 12.85 0.00 0.00 3.58
1251 1297 2.467826 GGCCGAGCTCTTGTGATGC 61.468 63.158 12.85 2.88 0.00 3.91
1268 1314 1.291184 TGCGAGCACAACGATGGAAG 61.291 55.000 0.00 0.00 0.00 3.46
1269 1315 1.014044 GCGAGCACAACGATGGAAGA 61.014 55.000 0.00 0.00 0.00 2.87
1270 1316 0.716108 CGAGCACAACGATGGAAGAC 59.284 55.000 0.00 0.00 0.00 3.01
1271 1317 1.079503 GAGCACAACGATGGAAGACC 58.920 55.000 0.00 0.00 0.00 3.85
1272 1318 0.321653 AGCACAACGATGGAAGACCC 60.322 55.000 0.00 0.00 34.81 4.46
1285 1331 2.495084 GAAGACCCAAGAACCTGTGAC 58.505 52.381 0.00 0.00 0.00 3.67
1336 1408 2.151202 TCCACGCACCATTTCTTTCTC 58.849 47.619 0.00 0.00 0.00 2.87
1337 1409 1.879380 CCACGCACCATTTCTTTCTCA 59.121 47.619 0.00 0.00 0.00 3.27
1338 1410 2.293122 CCACGCACCATTTCTTTCTCAA 59.707 45.455 0.00 0.00 0.00 3.02
1339 1411 3.243367 CCACGCACCATTTCTTTCTCAAA 60.243 43.478 0.00 0.00 0.00 2.69
1340 1412 4.549458 CACGCACCATTTCTTTCTCAAAT 58.451 39.130 0.00 0.00 0.00 2.32
1341 1413 4.984161 CACGCACCATTTCTTTCTCAAATT 59.016 37.500 0.00 0.00 0.00 1.82
1343 1416 6.808212 CACGCACCATTTCTTTCTCAAATTAT 59.192 34.615 0.00 0.00 0.00 1.28
1347 1420 9.860898 GCACCATTTCTTTCTCAAATTATAGTT 57.139 29.630 0.00 0.00 0.00 2.24
1375 1449 6.860790 TGGTAAACCATCAGTCAGTATACA 57.139 37.500 5.50 0.00 42.01 2.29
1378 1452 7.604927 TGGTAAACCATCAGTCAGTATACAAAC 59.395 37.037 5.50 2.70 42.01 2.93
1380 1454 6.374417 AACCATCAGTCAGTATACAAACCT 57.626 37.500 5.50 0.00 0.00 3.50
1381 1455 6.374417 ACCATCAGTCAGTATACAAACCTT 57.626 37.500 5.50 0.00 0.00 3.50
1382 1456 6.173339 ACCATCAGTCAGTATACAAACCTTG 58.827 40.000 5.50 0.00 0.00 3.61
1383 1457 5.065218 CCATCAGTCAGTATACAAACCTTGC 59.935 44.000 5.50 0.00 0.00 4.01
1384 1458 5.222079 TCAGTCAGTATACAAACCTTGCA 57.778 39.130 5.50 0.00 0.00 4.08
1385 1459 5.237815 TCAGTCAGTATACAAACCTTGCAG 58.762 41.667 5.50 0.00 0.00 4.41
1386 1460 4.997395 CAGTCAGTATACAAACCTTGCAGT 59.003 41.667 5.50 0.00 0.00 4.40
1387 1461 5.470098 CAGTCAGTATACAAACCTTGCAGTT 59.530 40.000 5.50 0.00 0.00 3.16
1390 1464 5.178623 TCAGTATACAAACCTTGCAGTTTCG 59.821 40.000 5.50 1.72 37.87 3.46
1394 1468 2.192624 CAAACCTTGCAGTTTCGTTGG 58.807 47.619 1.33 0.00 37.87 3.77
1399 1473 0.380378 TTGCAGTTTCGTTGGTGCTC 59.620 50.000 0.00 0.00 36.84 4.26
1400 1474 1.082756 GCAGTTTCGTTGGTGCTCG 60.083 57.895 0.00 0.00 32.97 5.03
1402 1476 1.522806 AGTTTCGTTGGTGCTCGCA 60.523 52.632 0.00 0.00 0.00 5.10
1403 1477 1.368850 GTTTCGTTGGTGCTCGCAC 60.369 57.895 13.37 13.37 45.49 5.34
1413 1487 0.040958 GTGCTCGCACAAAGTTGGAG 60.041 55.000 16.52 0.00 45.53 3.86
1414 1488 1.081840 GCTCGCACAAAGTTGGAGC 60.082 57.895 5.42 5.42 42.68 4.70
1415 1489 1.785041 GCTCGCACAAAGTTGGAGCA 61.785 55.000 12.90 1.73 47.00 4.26
1416 1490 0.040958 CTCGCACAAAGTTGGAGCAC 60.041 55.000 0.45 0.00 34.39 4.40
1417 1491 1.008538 CGCACAAAGTTGGAGCACC 60.009 57.895 0.45 0.00 34.39 5.01
1433 1517 3.023119 AGCACCATCTAGAGACAGACTG 58.977 50.000 0.00 0.00 0.00 3.51
1434 1518 2.100584 GCACCATCTAGAGACAGACTGG 59.899 54.545 7.51 1.45 33.24 4.00
1438 1522 3.820467 CCATCTAGAGACAGACTGGCTAG 59.180 52.174 11.88 15.17 34.53 3.42
1439 1523 4.445592 CCATCTAGAGACAGACTGGCTAGA 60.446 50.000 22.90 22.90 34.53 2.43
1442 1526 2.944129 AGAGACAGACTGGCTAGATCC 58.056 52.381 11.88 0.00 34.53 3.36
1447 1531 1.055040 AGACTGGCTAGATCCCATGC 58.945 55.000 3.17 0.00 0.00 4.06
1460 1544 2.103538 CATGCCGCACTCCATTGC 59.896 61.111 0.00 0.00 39.28 3.56
1471 1555 3.694072 GCACTCCATTGCTGTTACCATTA 59.306 43.478 0.00 0.00 39.59 1.90
1473 1557 5.506317 GCACTCCATTGCTGTTACCATTATC 60.506 44.000 0.00 0.00 39.59 1.75
1477 1592 7.397192 ACTCCATTGCTGTTACCATTATCTTTT 59.603 33.333 0.00 0.00 0.00 2.27
1490 1605 6.822676 ACCATTATCTTTTCTGAAGCTCTGAG 59.177 38.462 0.00 0.00 0.00 3.35
1504 1619 2.354199 GCTCTGAGCTACATTTTCCTGC 59.646 50.000 21.93 0.00 38.45 4.85
1505 1620 2.941720 CTCTGAGCTACATTTTCCTGCC 59.058 50.000 0.00 0.00 0.00 4.85
1512 1627 1.168714 ACATTTTCCTGCCTTCTCGC 58.831 50.000 0.00 0.00 0.00 5.03
1519 1634 4.314440 TGCCTTCTCGCCGTGCTT 62.314 61.111 0.00 0.00 0.00 3.91
1521 1636 2.048222 CCTTCTCGCCGTGCTTGA 60.048 61.111 0.00 0.00 0.00 3.02
1522 1637 1.448540 CCTTCTCGCCGTGCTTGAT 60.449 57.895 0.00 0.00 0.00 2.57
1523 1638 1.021390 CCTTCTCGCCGTGCTTGATT 61.021 55.000 0.00 0.00 0.00 2.57
1527 1642 2.201732 TCTCGCCGTGCTTGATTATTC 58.798 47.619 0.00 0.00 0.00 1.75
1528 1643 2.159099 TCTCGCCGTGCTTGATTATTCT 60.159 45.455 0.00 0.00 0.00 2.40
1530 1645 3.006940 TCGCCGTGCTTGATTATTCTTT 58.993 40.909 0.00 0.00 0.00 2.52
1532 1647 3.543494 CGCCGTGCTTGATTATTCTTTTG 59.457 43.478 0.00 0.00 0.00 2.44
1535 1650 5.405269 GCCGTGCTTGATTATTCTTTTGTTT 59.595 36.000 0.00 0.00 0.00 2.83
1538 1653 6.787043 CGTGCTTGATTATTCTTTTGTTTTGC 59.213 34.615 0.00 0.00 0.00 3.68
1544 1659 8.801715 TGATTATTCTTTTGTTTTGCTCTGAC 57.198 30.769 0.00 0.00 0.00 3.51
1559 1674 0.460284 CTGACCGGTGAGAAATCCCG 60.460 60.000 17.03 0.00 41.37 5.14
1560 1675 1.814169 GACCGGTGAGAAATCCCGC 60.814 63.158 14.63 0.00 40.38 6.13
1694 1810 1.420532 TAACCAACCGCTCCCCAACT 61.421 55.000 0.00 0.00 0.00 3.16
1696 1812 2.359975 CAACCGCTCCCCAACTCC 60.360 66.667 0.00 0.00 0.00 3.85
1716 1832 0.441533 CGCATGCTTCAGACACAGTC 59.558 55.000 17.13 0.00 0.00 3.51
1717 1833 1.805869 GCATGCTTCAGACACAGTCT 58.194 50.000 11.37 0.00 44.44 3.24
1736 1852 4.218852 AGTCTCTTGCACTCTTGTACTACC 59.781 45.833 0.00 0.00 0.00 3.18
1761 1877 6.091577 CACTAGTAGCAGGATAGATAGACACG 59.908 46.154 0.00 0.00 0.00 4.49
1766 1882 1.073444 AGGATAGATAGACACGCCGGA 59.927 52.381 5.05 0.00 0.00 5.14
1783 1900 4.868734 CGCCGGACTTTCTCTAAAAAGTAT 59.131 41.667 5.05 0.00 46.69 2.12
1784 1901 6.038356 CGCCGGACTTTCTCTAAAAAGTATA 58.962 40.000 5.05 0.00 46.69 1.47
1786 1903 6.018913 GCCGGACTTTCTCTAAAAAGTATAGC 60.019 42.308 5.05 2.77 46.69 2.97
1787 1904 7.039882 CCGGACTTTCTCTAAAAAGTATAGCA 58.960 38.462 0.00 0.00 46.69 3.49
1797 1915 4.404507 AAAAGTATAGCAGCAACACACG 57.595 40.909 0.00 0.00 0.00 4.49
1803 1921 2.332514 CAGCAACACACGGCCTTG 59.667 61.111 7.87 7.87 0.00 3.61
1819 1940 0.376152 CTTGGCATGCACGACTGATC 59.624 55.000 21.36 0.00 0.00 2.92
1822 1943 1.156645 GGCATGCACGACTGATCCTC 61.157 60.000 21.36 0.00 0.00 3.71
1826 1952 1.847328 TGCACGACTGATCCTCCTTA 58.153 50.000 0.00 0.00 0.00 2.69
1835 1961 3.072184 ACTGATCCTCCTTACATGCCATC 59.928 47.826 0.00 0.00 0.00 3.51
1837 1963 3.326006 TGATCCTCCTTACATGCCATCTC 59.674 47.826 0.00 0.00 0.00 2.75
1838 1964 2.050144 TCCTCCTTACATGCCATCTCC 58.950 52.381 0.00 0.00 0.00 3.71
1839 1965 1.770658 CCTCCTTACATGCCATCTCCA 59.229 52.381 0.00 0.00 0.00 3.86
1840 1966 2.374504 CCTCCTTACATGCCATCTCCAT 59.625 50.000 0.00 0.00 0.00 3.41
1841 1967 3.409570 CTCCTTACATGCCATCTCCATG 58.590 50.000 0.00 0.00 44.28 3.66
1853 1979 9.102757 CATGCCATCTCCATGTACTATTATTAC 57.897 37.037 0.00 0.00 36.26 1.89
1854 1980 8.201242 TGCCATCTCCATGTACTATTATTACA 57.799 34.615 0.00 0.00 34.00 2.41
1855 1981 8.314021 TGCCATCTCCATGTACTATTATTACAG 58.686 37.037 0.00 0.00 33.01 2.74
1856 1982 8.314751 GCCATCTCCATGTACTATTATTACAGT 58.685 37.037 0.00 0.00 33.01 3.55
1872 1998 1.945394 ACAGTTCACAAAGCAGCTCAG 59.055 47.619 0.00 0.00 0.00 3.35
1873 1999 1.945394 CAGTTCACAAAGCAGCTCAGT 59.055 47.619 0.00 0.00 0.00 3.41
1887 2013 5.300286 AGCAGCTCAGTTTTACAGTGAAAAT 59.700 36.000 0.00 0.00 34.18 1.82
1888 2014 5.626955 GCAGCTCAGTTTTACAGTGAAAATC 59.373 40.000 0.00 0.00 34.18 2.17
1889 2015 6.145535 CAGCTCAGTTTTACAGTGAAAATCC 58.854 40.000 0.00 0.00 34.18 3.01
1892 2018 5.450453 TCAGTTTTACAGTGAAAATCCCCA 58.550 37.500 0.00 0.00 31.28 4.96
1902 2028 2.027929 TGAAAATCCCCATGCTTGCAAG 60.028 45.455 22.44 22.44 0.00 4.01
1903 2029 1.648116 AAATCCCCATGCTTGCAAGT 58.352 45.000 26.55 6.01 0.00 3.16
1930 2059 1.669779 GATCTGTTGGATCTGCTGTGC 59.330 52.381 0.00 0.00 45.38 4.57
1931 2060 0.689055 TCTGTTGGATCTGCTGTGCT 59.311 50.000 0.00 0.00 0.00 4.40
1933 2062 0.689055 TGTTGGATCTGCTGTGCTCT 59.311 50.000 0.00 0.00 0.00 4.09
1936 2065 0.035725 TGGATCTGCTGTGCTCTTGG 60.036 55.000 0.00 0.00 0.00 3.61
1937 2066 0.747283 GGATCTGCTGTGCTCTTGGG 60.747 60.000 0.00 0.00 0.00 4.12
1938 2067 0.251354 GATCTGCTGTGCTCTTGGGA 59.749 55.000 0.00 0.00 0.00 4.37
1945 2076 2.357009 GCTGTGCTCTTGGGATACATTG 59.643 50.000 0.00 0.00 39.74 2.82
1946 2077 2.947652 CTGTGCTCTTGGGATACATTGG 59.052 50.000 0.00 0.00 39.74 3.16
1963 2094 1.511850 TGGAACATGTGAGCGAACAG 58.488 50.000 0.00 0.00 32.52 3.16
1964 2095 1.202639 TGGAACATGTGAGCGAACAGT 60.203 47.619 0.00 0.00 32.52 3.55
1965 2096 1.195448 GGAACATGTGAGCGAACAGTG 59.805 52.381 0.00 0.00 32.52 3.66
1966 2097 2.135139 GAACATGTGAGCGAACAGTGA 58.865 47.619 0.00 0.00 32.52 3.41
1967 2098 2.238942 ACATGTGAGCGAACAGTGAA 57.761 45.000 0.00 0.00 32.52 3.18
1968 2099 2.560504 ACATGTGAGCGAACAGTGAAA 58.439 42.857 0.00 0.00 32.52 2.69
1969 2100 3.141398 ACATGTGAGCGAACAGTGAAAT 58.859 40.909 0.00 0.00 32.52 2.17
1970 2101 3.565482 ACATGTGAGCGAACAGTGAAATT 59.435 39.130 0.00 0.00 32.52 1.82
1971 2102 4.036734 ACATGTGAGCGAACAGTGAAATTT 59.963 37.500 0.00 0.00 32.52 1.82
1972 2103 4.630894 TGTGAGCGAACAGTGAAATTTT 57.369 36.364 0.00 0.00 0.00 1.82
1973 2104 4.992688 TGTGAGCGAACAGTGAAATTTTT 58.007 34.783 0.00 0.00 0.00 1.94
1974 2105 6.125327 TGTGAGCGAACAGTGAAATTTTTA 57.875 33.333 0.00 0.00 0.00 1.52
1975 2106 6.556212 TGTGAGCGAACAGTGAAATTTTTAA 58.444 32.000 0.00 0.00 0.00 1.52
1976 2107 6.470877 TGTGAGCGAACAGTGAAATTTTTAAC 59.529 34.615 0.00 0.00 0.00 2.01
1977 2108 6.691388 GTGAGCGAACAGTGAAATTTTTAACT 59.309 34.615 0.00 0.00 31.94 2.24
1978 2109 7.220108 GTGAGCGAACAGTGAAATTTTTAACTT 59.780 33.333 0.00 0.00 29.22 2.66
1979 2110 7.219917 TGAGCGAACAGTGAAATTTTTAACTTG 59.780 33.333 0.00 0.00 29.22 3.16
1980 2111 6.475402 AGCGAACAGTGAAATTTTTAACTTGG 59.525 34.615 0.00 0.00 29.22 3.61
1981 2112 6.636443 CGAACAGTGAAATTTTTAACTTGGC 58.364 36.000 0.00 0.00 29.22 4.52
1982 2113 6.559521 CGAACAGTGAAATTTTTAACTTGGCG 60.560 38.462 0.00 0.00 29.22 5.69
1983 2114 5.656480 ACAGTGAAATTTTTAACTTGGCGT 58.344 33.333 0.00 0.00 29.22 5.68
1984 2115 5.518487 ACAGTGAAATTTTTAACTTGGCGTG 59.482 36.000 0.00 0.00 29.22 5.34
1985 2116 5.518487 CAGTGAAATTTTTAACTTGGCGTGT 59.482 36.000 0.00 0.00 29.22 4.49
1986 2117 5.518487 AGTGAAATTTTTAACTTGGCGTGTG 59.482 36.000 0.00 0.00 26.96 3.82
1987 2118 4.806247 TGAAATTTTTAACTTGGCGTGTGG 59.194 37.500 0.00 0.00 0.00 4.17
1988 2119 2.873133 TTTTTAACTTGGCGTGTGGG 57.127 45.000 0.00 0.00 0.00 4.61
1989 2120 1.765230 TTTTAACTTGGCGTGTGGGT 58.235 45.000 0.00 0.00 0.00 4.51
1990 2121 2.634815 TTTAACTTGGCGTGTGGGTA 57.365 45.000 0.00 0.00 0.00 3.69
1991 2122 2.172851 TTAACTTGGCGTGTGGGTAG 57.827 50.000 0.00 0.00 0.00 3.18
1992 2123 1.050204 TAACTTGGCGTGTGGGTAGT 58.950 50.000 0.00 0.00 0.00 2.73
1993 2124 0.181824 AACTTGGCGTGTGGGTAGTT 59.818 50.000 0.00 0.00 0.00 2.24
1994 2125 0.181824 ACTTGGCGTGTGGGTAGTTT 59.818 50.000 0.00 0.00 0.00 2.66
1995 2126 1.314730 CTTGGCGTGTGGGTAGTTTT 58.685 50.000 0.00 0.00 0.00 2.43
1996 2127 1.265905 CTTGGCGTGTGGGTAGTTTTC 59.734 52.381 0.00 0.00 0.00 2.29
1997 2128 0.535553 TGGCGTGTGGGTAGTTTTCC 60.536 55.000 0.00 0.00 0.00 3.13
2025 2156 0.524862 GAAACACTGCAGCTGATGGG 59.475 55.000 20.43 12.60 0.00 4.00
2027 2158 0.330604 AACACTGCAGCTGATGGGAT 59.669 50.000 20.43 1.31 0.00 3.85
2065 2236 1.002251 CTAGCGTAGACTAGCCTGTGC 60.002 57.143 0.00 0.00 33.69 4.57
2236 2422 3.006430 TCCTCACGTTCATGTGCTTCTAA 59.994 43.478 0.00 0.00 39.73 2.10
2287 2477 8.934023 TTTTGGACAAGTTATTAGTTCATCCT 57.066 30.769 0.00 0.00 0.00 3.24
2289 2479 7.016153 TGGACAAGTTATTAGTTCATCCTGT 57.984 36.000 0.00 0.00 0.00 4.00
2290 2480 7.103641 TGGACAAGTTATTAGTTCATCCTGTC 58.896 38.462 0.00 0.00 0.00 3.51
2291 2481 7.103641 GGACAAGTTATTAGTTCATCCTGTCA 58.896 38.462 0.00 0.00 0.00 3.58
2293 2483 7.106239 ACAAGTTATTAGTTCATCCTGTCAGG 58.894 38.462 13.21 13.21 36.46 3.86
2305 2495 3.516586 TCCTGTCAGGACTAACCAATCA 58.483 45.455 18.15 0.00 40.06 2.57
2306 2496 3.907474 TCCTGTCAGGACTAACCAATCAA 59.093 43.478 18.15 0.00 40.06 2.57
2310 2500 6.540189 CCTGTCAGGACTAACCAATCAATAAG 59.460 42.308 14.26 0.00 37.67 1.73
2313 2503 6.374333 GTCAGGACTAACCAATCAATAAGCAA 59.626 38.462 0.00 0.00 42.04 3.91
2314 2504 6.945435 TCAGGACTAACCAATCAATAAGCAAA 59.055 34.615 0.00 0.00 42.04 3.68
2316 2506 8.253113 CAGGACTAACCAATCAATAAGCAAATT 58.747 33.333 0.00 0.00 42.04 1.82
2317 2507 9.474313 AGGACTAACCAATCAATAAGCAAATTA 57.526 29.630 0.00 0.00 42.04 1.40
2324 2514 6.697019 CCAATCAATAAGCAAATTAACCGAGG 59.303 38.462 0.00 0.00 0.00 4.63
2326 2516 4.642885 TCAATAAGCAAATTAACCGAGGGG 59.357 41.667 0.00 0.00 40.11 4.79
2330 2520 3.502356 AGCAAATTAACCGAGGGGAAAA 58.498 40.909 0.00 0.00 36.97 2.29
2332 2522 4.159693 AGCAAATTAACCGAGGGGAAAATC 59.840 41.667 0.00 0.00 36.97 2.17
2333 2523 4.081917 GCAAATTAACCGAGGGGAAAATCA 60.082 41.667 0.00 0.00 36.97 2.57
2344 2534 4.492646 AGGGGAAAATCAACTGATGGTTT 58.507 39.130 0.00 0.00 44.28 3.27
2345 2535 5.650283 AGGGGAAAATCAACTGATGGTTTA 58.350 37.500 0.00 0.00 41.53 2.01
2346 2536 6.081356 AGGGGAAAATCAACTGATGGTTTAA 58.919 36.000 0.00 0.00 41.53 1.52
2347 2537 6.014584 AGGGGAAAATCAACTGATGGTTTAAC 60.015 38.462 0.00 0.00 41.53 2.01
2350 2540 7.255801 GGGAAAATCAACTGATGGTTTAACTGA 60.256 37.037 0.00 0.00 41.53 3.41
2506 2697 4.864334 GTCCGGATGCTGGGCCTG 62.864 72.222 7.81 5.32 0.00 4.85
2522 2713 4.662961 TGCTCAGCGTGGTCACCG 62.663 66.667 0.00 0.00 0.00 4.94
2656 2847 0.464036 TCTCCATCATGGTACGCACC 59.536 55.000 2.79 0.00 46.00 5.01
2719 2918 5.980116 CCTCTAGTTTTCATCCATGTACTCG 59.020 44.000 0.00 0.00 0.00 4.18
2737 2936 1.377202 GGTCATGACCCATGCGTGT 60.377 57.895 31.37 0.00 45.68 4.49
2739 2938 2.039974 TCATGACCCATGCGTGTGC 61.040 57.895 4.96 0.00 41.18 4.57
2893 3097 2.290197 ACGTACGTCCTTCTCTTCTCCT 60.290 50.000 16.72 0.00 0.00 3.69
2904 3108 1.201429 TCTTCTCCTCCCCTGGCAAC 61.201 60.000 0.00 0.00 0.00 4.17
3017 3292 2.295885 AGCTGTAGCCATTGAATGCTC 58.704 47.619 0.00 0.00 43.38 4.26
3018 3293 1.336125 GCTGTAGCCATTGAATGCTCC 59.664 52.381 0.00 0.00 39.00 4.70
3019 3294 2.928334 CTGTAGCCATTGAATGCTCCT 58.072 47.619 0.00 0.00 39.00 3.69
3020 3295 3.745480 GCTGTAGCCATTGAATGCTCCTA 60.745 47.826 0.00 0.00 39.00 2.94
3021 3296 4.063689 CTGTAGCCATTGAATGCTCCTAG 58.936 47.826 0.00 0.00 39.00 3.02
3022 3297 3.455910 TGTAGCCATTGAATGCTCCTAGT 59.544 43.478 0.00 0.00 39.00 2.57
3023 3298 3.205784 AGCCATTGAATGCTCCTAGTC 57.794 47.619 0.00 0.00 30.33 2.59
3024 3299 2.158696 AGCCATTGAATGCTCCTAGTCC 60.159 50.000 0.00 0.00 30.33 3.85
3025 3300 2.158696 GCCATTGAATGCTCCTAGTCCT 60.159 50.000 0.00 0.00 0.00 3.85
3026 3301 3.686691 GCCATTGAATGCTCCTAGTCCTT 60.687 47.826 0.00 0.00 0.00 3.36
3027 3302 4.530875 CCATTGAATGCTCCTAGTCCTTT 58.469 43.478 0.00 0.00 0.00 3.11
3028 3303 4.337555 CCATTGAATGCTCCTAGTCCTTTG 59.662 45.833 0.00 0.00 0.00 2.77
3029 3304 4.908601 TTGAATGCTCCTAGTCCTTTGA 57.091 40.909 0.00 0.00 0.00 2.69
3030 3305 4.478206 TGAATGCTCCTAGTCCTTTGAG 57.522 45.455 0.00 0.00 0.00 3.02
3032 3307 3.354131 GCTCCTAGTCCTTTGAGCG 57.646 57.895 1.42 0.00 40.61 5.03
3033 3308 0.179097 GCTCCTAGTCCTTTGAGCGG 60.179 60.000 1.42 0.00 40.61 5.52
3034 3309 1.475403 CTCCTAGTCCTTTGAGCGGA 58.525 55.000 0.00 0.00 0.00 5.54
3035 3310 2.035632 CTCCTAGTCCTTTGAGCGGAT 58.964 52.381 0.00 0.00 32.25 4.18
3036 3311 1.757118 TCCTAGTCCTTTGAGCGGATG 59.243 52.381 0.00 0.00 32.25 3.51
3037 3312 1.202580 CCTAGTCCTTTGAGCGGATGG 60.203 57.143 0.00 0.00 32.25 3.51
3038 3313 1.757118 CTAGTCCTTTGAGCGGATGGA 59.243 52.381 0.00 0.00 32.25 3.41
3039 3314 1.207791 AGTCCTTTGAGCGGATGGAT 58.792 50.000 0.00 0.00 32.25 3.41
3040 3315 1.561542 AGTCCTTTGAGCGGATGGATT 59.438 47.619 0.00 0.00 32.25 3.01
3041 3316 1.672881 GTCCTTTGAGCGGATGGATTG 59.327 52.381 0.00 0.00 32.25 2.67
3042 3317 1.027357 CCTTTGAGCGGATGGATTGG 58.973 55.000 0.00 0.00 0.00 3.16
3043 3318 1.027357 CTTTGAGCGGATGGATTGGG 58.973 55.000 0.00 0.00 0.00 4.12
3044 3319 0.623194 TTTGAGCGGATGGATTGGGA 59.377 50.000 0.00 0.00 0.00 4.37
3045 3320 0.846015 TTGAGCGGATGGATTGGGAT 59.154 50.000 0.00 0.00 0.00 3.85
3046 3321 1.728323 TGAGCGGATGGATTGGGATA 58.272 50.000 0.00 0.00 0.00 2.59
3047 3322 1.625315 TGAGCGGATGGATTGGGATAG 59.375 52.381 0.00 0.00 0.00 2.08
3048 3323 1.625818 GAGCGGATGGATTGGGATAGT 59.374 52.381 0.00 0.00 0.00 2.12
3049 3324 1.349026 AGCGGATGGATTGGGATAGTG 59.651 52.381 0.00 0.00 0.00 2.74
3050 3325 1.813513 CGGATGGATTGGGATAGTGC 58.186 55.000 0.00 0.00 0.00 4.40
3051 3326 1.611673 CGGATGGATTGGGATAGTGCC 60.612 57.143 0.00 0.00 0.00 5.01
3064 3339 2.339712 GTGCCCACCACATGCAAC 59.660 61.111 0.00 0.00 44.06 4.17
3065 3340 3.293714 TGCCCACCACATGCAACG 61.294 61.111 0.00 0.00 30.85 4.10
3066 3341 4.722855 GCCCACCACATGCAACGC 62.723 66.667 0.00 0.00 0.00 4.84
3127 3459 9.003658 CATGTACTCCTAGTTCATTCAAAAGTT 57.996 33.333 0.00 0.00 34.60 2.66
3142 3477 8.655092 CATTCAAAAGTTAAAACAAGCTGACAA 58.345 29.630 0.00 0.00 0.00 3.18
3146 3481 9.134734 CAAAAGTTAAAACAAGCTGACAAGTAA 57.865 29.630 0.00 0.00 0.00 2.24
3148 3483 8.856490 AAGTTAAAACAAGCTGACAAGTAATG 57.144 30.769 0.00 0.00 0.00 1.90
3326 3837 4.648626 AAGAAGGCGGCAGCTGCA 62.649 61.111 37.63 0.00 44.36 4.41
3359 3870 2.003301 GAGGCAAAGATCAAGGTCGAC 58.997 52.381 7.13 7.13 0.00 4.20
3441 3952 3.184683 CGCCGTTGCAGAGAGAGC 61.185 66.667 0.00 0.00 37.32 4.09
3449 3960 0.392595 TGCAGAGAGAGCTTGCATGG 60.393 55.000 5.92 0.00 0.00 3.66
3450 3961 0.107800 GCAGAGAGAGCTTGCATGGA 60.108 55.000 2.44 0.00 0.00 3.41
3467 3978 1.625315 TGGAGTGACAGCAGCATAAGT 59.375 47.619 0.00 0.00 0.00 2.24
3468 3979 2.005451 GGAGTGACAGCAGCATAAGTG 58.995 52.381 0.00 0.00 0.00 3.16
3494 4005 7.361127 CGCTGCTTAATTAGTTAGTAGAGCTA 58.639 38.462 5.28 0.00 0.00 3.32
3544 4055 5.105392 TGCCTTGTTGATTTGTTTCTTGACT 60.105 36.000 0.00 0.00 0.00 3.41
3553 4064 6.762187 TGATTTGTTTCTTGACTTGGTACGTA 59.238 34.615 0.00 0.00 0.00 3.57
3554 4065 5.971895 TTGTTTCTTGACTTGGTACGTAC 57.028 39.130 17.56 17.56 0.00 3.67
3574 4085 3.472652 ACACGTACATTTGCCAGAAAGA 58.527 40.909 0.00 0.00 0.00 2.52
3575 4086 3.880490 ACACGTACATTTGCCAGAAAGAA 59.120 39.130 0.00 0.00 0.00 2.52
3576 4087 4.336993 ACACGTACATTTGCCAGAAAGAAA 59.663 37.500 0.00 0.00 0.00 2.52
3577 4088 4.911610 CACGTACATTTGCCAGAAAGAAAG 59.088 41.667 0.00 0.00 0.00 2.62
3626 4145 1.133450 AGCCTACGGGAGAGCTATGAA 60.133 52.381 1.87 0.00 32.00 2.57
3649 4168 6.541111 AACAGTACTCCGAAAATCTCAAAC 57.459 37.500 0.00 0.00 0.00 2.93
3714 4233 3.927142 GTGTTGTACTCCTCCAAAGATCG 59.073 47.826 0.00 0.00 0.00 3.69
3717 4236 5.046591 TGTTGTACTCCTCCAAAGATCGAAT 60.047 40.000 0.00 0.00 0.00 3.34
4190 4721 3.286329 TTGCTGACAGATATGTGGCAT 57.714 42.857 9.16 0.00 33.96 4.40
4320 4851 2.309162 ACTCTGCCTCTGTACTAGACCA 59.691 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.095415 GTGGACTACATTTTGGCCGAAC 60.095 50.000 4.38 0.00 0.00 3.95
11 12 1.816074 GTGGACTACATTTTGGCCGA 58.184 50.000 0.00 0.00 0.00 5.54
13 14 1.199097 CACGTGGACTACATTTTGGCC 59.801 52.381 7.95 0.00 0.00 5.36
16 17 2.611974 GGCACGTGGACTACATTTTG 57.388 50.000 18.88 0.00 0.00 2.44
42 43 2.036992 AGGCATCTCGATGGTCTTCATC 59.963 50.000 8.81 0.00 46.63 2.92
44 45 1.410517 GAGGCATCTCGATGGTCTTCA 59.589 52.381 8.81 0.00 39.16 3.02
57 58 2.215907 ATGCGCTATATCGAGGCATC 57.784 50.000 9.73 0.00 40.01 3.91
65 66 3.123050 TGTGTGTGTGATGCGCTATATC 58.877 45.455 9.73 3.80 0.00 1.63
66 67 3.126073 CTGTGTGTGTGATGCGCTATAT 58.874 45.455 9.73 0.00 0.00 0.86
78 80 2.102420 TCCTGTCGATTTCTGTGTGTGT 59.898 45.455 0.00 0.00 0.00 3.72
80 82 3.006859 TCATCCTGTCGATTTCTGTGTGT 59.993 43.478 0.00 0.00 0.00 3.72
85 87 3.533606 AGGTCATCCTGTCGATTTCTG 57.466 47.619 0.00 0.00 43.33 3.02
87 89 5.848406 AGAATAGGTCATCCTGTCGATTTC 58.152 41.667 0.00 0.00 44.81 2.17
118 120 2.649331 AGCAGTTGCATTTCTCATGC 57.351 45.000 6.90 0.00 45.16 4.06
122 131 4.698583 ATCTCAAGCAGTTGCATTTCTC 57.301 40.909 6.90 0.00 45.16 2.87
124 133 8.915871 TTATTAATCTCAAGCAGTTGCATTTC 57.084 30.769 6.90 0.00 45.16 2.17
153 162 8.087750 TCGAAAGTAAATTTTTCCAGCATCATT 58.912 29.630 0.00 0.00 32.26 2.57
155 164 6.861055 GTCGAAAGTAAATTTTTCCAGCATCA 59.139 34.615 0.00 0.00 32.26 3.07
156 165 7.084486 AGTCGAAAGTAAATTTTTCCAGCATC 58.916 34.615 0.00 0.00 32.26 3.91
157 166 6.981722 AGTCGAAAGTAAATTTTTCCAGCAT 58.018 32.000 0.00 0.00 32.26 3.79
158 167 6.385649 AGTCGAAAGTAAATTTTTCCAGCA 57.614 33.333 0.00 0.00 32.26 4.41
159 168 5.564127 CGAGTCGAAAGTAAATTTTTCCAGC 59.436 40.000 6.73 0.00 32.26 4.85
161 170 5.528320 ACCGAGTCGAAAGTAAATTTTTCCA 59.472 36.000 15.64 0.00 32.26 3.53
163 172 8.437742 TGATACCGAGTCGAAAGTAAATTTTTC 58.562 33.333 15.64 2.42 0.00 2.29
168 177 9.245962 CTTTATGATACCGAGTCGAAAGTAAAT 57.754 33.333 15.64 8.65 0.00 1.40
171 180 7.325660 ACTTTATGATACCGAGTCGAAAGTA 57.674 36.000 18.90 11.89 34.92 2.24
172 181 6.205101 ACTTTATGATACCGAGTCGAAAGT 57.795 37.500 15.64 15.98 33.31 2.66
174 183 9.060347 ACTATACTTTATGATACCGAGTCGAAA 57.940 33.333 15.64 3.63 0.00 3.46
197 206 7.065324 CGATTTTAATCTTTGTGTAGGGCACTA 59.935 37.037 0.00 0.00 39.70 2.74
208 217 7.368059 GTTTCTCCCACGATTTTAATCTTTGT 58.632 34.615 0.00 0.00 33.24 2.83
212 221 5.484715 TCGTTTCTCCCACGATTTTAATCT 58.515 37.500 0.00 0.00 41.66 2.40
213 222 5.789710 TCGTTTCTCCCACGATTTTAATC 57.210 39.130 0.00 0.00 41.66 1.75
240 249 0.598680 GTGGCGACTATAGCTGCTGG 60.599 60.000 13.43 5.05 34.52 4.85
242 251 1.043116 TGGTGGCGACTATAGCTGCT 61.043 55.000 7.57 7.57 34.52 4.24
244 253 2.558795 ACTATGGTGGCGACTATAGCTG 59.441 50.000 25.32 9.46 43.94 4.24
245 254 2.558795 CACTATGGTGGCGACTATAGCT 59.441 50.000 25.32 13.83 43.94 3.32
278 300 5.935945 TCATCTATCCCAGCGGAAAAATTA 58.064 37.500 0.00 0.00 43.10 1.40
282 304 2.771943 ACTCATCTATCCCAGCGGAAAA 59.228 45.455 0.00 0.00 43.10 2.29
286 308 1.967066 AGAACTCATCTATCCCAGCGG 59.033 52.381 0.00 0.00 36.32 5.52
287 309 4.075682 TCTAGAACTCATCTATCCCAGCG 58.924 47.826 0.00 0.00 39.88 5.18
289 311 5.640147 ACCTCTAGAACTCATCTATCCCAG 58.360 45.833 0.00 0.00 39.88 4.45
290 312 5.671463 ACCTCTAGAACTCATCTATCCCA 57.329 43.478 0.00 0.00 39.88 4.37
291 313 5.836358 ACAACCTCTAGAACTCATCTATCCC 59.164 44.000 0.00 0.00 39.88 3.85
295 317 5.717178 AGCAACAACCTCTAGAACTCATCTA 59.283 40.000 0.00 0.00 39.71 1.98
330 352 6.985188 TTCTCCATAAATCTCTTCAAACGG 57.015 37.500 0.00 0.00 0.00 4.44
348 370 1.922135 TTGCTGCCGCGAATTTCTCC 61.922 55.000 8.23 0.00 39.65 3.71
349 371 0.794605 GTTGCTGCCGCGAATTTCTC 60.795 55.000 8.23 0.00 39.65 2.87
351 373 1.801512 GGTTGCTGCCGCGAATTTC 60.802 57.895 8.23 0.00 39.65 2.17
353 375 1.029408 TATGGTTGCTGCCGCGAATT 61.029 50.000 8.23 0.00 39.65 2.17
355 377 1.451207 ATATGGTTGCTGCCGCGAA 60.451 52.632 8.23 0.00 39.65 4.70
356 378 2.179547 CATATGGTTGCTGCCGCGA 61.180 57.895 8.23 0.00 39.65 5.87
357 379 1.509644 ATCATATGGTTGCTGCCGCG 61.510 55.000 0.00 0.00 39.65 6.46
358 380 1.466167 CTATCATATGGTTGCTGCCGC 59.534 52.381 2.13 0.00 0.00 6.53
359 381 1.466167 GCTATCATATGGTTGCTGCCG 59.534 52.381 14.19 0.00 0.00 5.69
360 382 1.815003 GGCTATCATATGGTTGCTGCC 59.185 52.381 19.53 12.53 0.00 4.85
361 383 2.507484 TGGCTATCATATGGTTGCTGC 58.493 47.619 19.53 6.96 0.00 5.25
363 385 3.603532 CGATGGCTATCATATGGTTGCT 58.396 45.455 19.53 3.43 35.97 3.91
364 386 2.679837 CCGATGGCTATCATATGGTTGC 59.320 50.000 13.25 13.25 35.97 4.17
365 387 3.273434 CCCGATGGCTATCATATGGTTG 58.727 50.000 10.94 0.00 35.97 3.77
366 388 3.634397 CCCGATGGCTATCATATGGTT 57.366 47.619 10.94 0.00 35.97 3.67
379 401 1.464608 CGCATGTAAATAGCCCGATGG 59.535 52.381 0.00 0.00 0.00 3.51
380 402 2.412870 TCGCATGTAAATAGCCCGATG 58.587 47.619 0.00 0.00 0.00 3.84
381 403 2.831685 TCGCATGTAAATAGCCCGAT 57.168 45.000 0.00 0.00 0.00 4.18
382 404 2.831685 ATCGCATGTAAATAGCCCGA 57.168 45.000 0.00 0.00 0.00 5.14
383 405 3.896648 AAATCGCATGTAAATAGCCCG 57.103 42.857 0.00 0.00 0.00 6.13
384 406 7.060633 CGAAATAAAATCGCATGTAAATAGCCC 59.939 37.037 0.00 0.00 33.07 5.19
385 407 7.589954 ACGAAATAAAATCGCATGTAAATAGCC 59.410 33.333 0.00 0.00 43.88 3.93
386 408 8.409690 CACGAAATAAAATCGCATGTAAATAGC 58.590 33.333 0.00 0.00 43.88 2.97
387 409 8.891928 CCACGAAATAAAATCGCATGTAAATAG 58.108 33.333 0.00 0.00 43.88 1.73
388 410 8.399425 ACCACGAAATAAAATCGCATGTAAATA 58.601 29.630 0.00 0.00 43.88 1.40
389 411 7.254852 ACCACGAAATAAAATCGCATGTAAAT 58.745 30.769 0.00 0.00 43.88 1.40
390 412 6.613233 ACCACGAAATAAAATCGCATGTAAA 58.387 32.000 0.00 0.00 43.88 2.01
391 413 6.184580 ACCACGAAATAAAATCGCATGTAA 57.815 33.333 0.00 0.00 43.88 2.41
392 414 5.220700 GGACCACGAAATAAAATCGCATGTA 60.221 40.000 0.00 0.00 43.88 2.29
393 415 4.438200 GGACCACGAAATAAAATCGCATGT 60.438 41.667 0.00 0.00 43.88 3.21
394 416 4.035017 GGACCACGAAATAAAATCGCATG 58.965 43.478 0.00 0.00 43.88 4.06
395 417 3.945285 AGGACCACGAAATAAAATCGCAT 59.055 39.130 0.00 0.00 43.88 4.73
396 418 3.340034 AGGACCACGAAATAAAATCGCA 58.660 40.909 0.00 0.00 43.88 5.10
397 419 4.569564 AGTAGGACCACGAAATAAAATCGC 59.430 41.667 0.00 0.00 43.88 4.58
398 420 6.753279 TGTAGTAGGACCACGAAATAAAATCG 59.247 38.462 0.00 0.00 45.47 3.34
399 421 7.546667 TGTGTAGTAGGACCACGAAATAAAATC 59.453 37.037 0.00 0.00 31.75 2.17
400 422 7.332678 GTGTGTAGTAGGACCACGAAATAAAAT 59.667 37.037 0.00 0.00 31.75 1.82
401 423 6.646240 GTGTGTAGTAGGACCACGAAATAAAA 59.354 38.462 0.00 0.00 31.75 1.52
402 424 6.015180 AGTGTGTAGTAGGACCACGAAATAAA 60.015 38.462 0.00 0.00 31.75 1.40
403 425 5.477984 AGTGTGTAGTAGGACCACGAAATAA 59.522 40.000 0.00 0.00 31.75 1.40
404 426 5.012239 AGTGTGTAGTAGGACCACGAAATA 58.988 41.667 0.00 0.00 31.75 1.40
405 427 3.830755 AGTGTGTAGTAGGACCACGAAAT 59.169 43.478 0.00 0.00 31.75 2.17
406 428 3.225104 AGTGTGTAGTAGGACCACGAAA 58.775 45.455 0.00 0.00 31.75 3.46
407 429 2.867624 AGTGTGTAGTAGGACCACGAA 58.132 47.619 0.00 0.00 31.75 3.85
408 430 2.574006 AGTGTGTAGTAGGACCACGA 57.426 50.000 0.00 0.00 31.75 4.35
409 431 3.341823 AGTAGTGTGTAGTAGGACCACG 58.658 50.000 0.00 0.00 31.75 4.94
410 432 3.693578 GGAGTAGTGTGTAGTAGGACCAC 59.306 52.174 0.00 0.00 0.00 4.16
411 433 3.308688 GGGAGTAGTGTGTAGTAGGACCA 60.309 52.174 0.00 0.00 0.00 4.02
412 434 3.286353 GGGAGTAGTGTGTAGTAGGACC 58.714 54.545 0.00 0.00 0.00 4.46
413 435 3.286353 GGGGAGTAGTGTGTAGTAGGAC 58.714 54.545 0.00 0.00 0.00 3.85
414 436 2.092753 CGGGGAGTAGTGTGTAGTAGGA 60.093 54.545 0.00 0.00 0.00 2.94
415 437 2.092753 TCGGGGAGTAGTGTGTAGTAGG 60.093 54.545 0.00 0.00 0.00 3.18
416 438 3.272574 TCGGGGAGTAGTGTGTAGTAG 57.727 52.381 0.00 0.00 0.00 2.57
417 439 3.719268 TTCGGGGAGTAGTGTGTAGTA 57.281 47.619 0.00 0.00 0.00 1.82
418 440 2.592102 TTCGGGGAGTAGTGTGTAGT 57.408 50.000 0.00 0.00 0.00 2.73
419 441 5.587388 TTAATTCGGGGAGTAGTGTGTAG 57.413 43.478 0.00 0.00 0.00 2.74
420 442 5.999205 TTTAATTCGGGGAGTAGTGTGTA 57.001 39.130 0.00 0.00 0.00 2.90
421 443 4.895668 TTTAATTCGGGGAGTAGTGTGT 57.104 40.909 0.00 0.00 0.00 3.72
422 444 5.878116 TGATTTTAATTCGGGGAGTAGTGTG 59.122 40.000 0.00 0.00 0.00 3.82
423 445 5.878669 GTGATTTTAATTCGGGGAGTAGTGT 59.121 40.000 0.00 0.00 0.00 3.55
424 446 5.006358 CGTGATTTTAATTCGGGGAGTAGTG 59.994 44.000 0.00 0.00 0.00 2.74
425 447 5.105228 TCGTGATTTTAATTCGGGGAGTAGT 60.105 40.000 0.00 0.00 0.00 2.73
426 448 5.233689 GTCGTGATTTTAATTCGGGGAGTAG 59.766 44.000 0.00 0.00 0.00 2.57
427 449 5.111293 GTCGTGATTTTAATTCGGGGAGTA 58.889 41.667 0.00 0.00 0.00 2.59
428 450 3.937079 GTCGTGATTTTAATTCGGGGAGT 59.063 43.478 0.00 0.00 0.00 3.85
429 451 3.936453 TGTCGTGATTTTAATTCGGGGAG 59.064 43.478 0.00 0.00 0.00 4.30
430 452 3.685756 GTGTCGTGATTTTAATTCGGGGA 59.314 43.478 0.00 0.00 0.00 4.81
431 453 3.687698 AGTGTCGTGATTTTAATTCGGGG 59.312 43.478 0.00 0.00 0.00 5.73
432 454 4.939509 AGTGTCGTGATTTTAATTCGGG 57.060 40.909 0.00 0.00 0.00 5.14
440 462 9.825972 CTGTTCAATAATAAGTGTCGTGATTTT 57.174 29.630 0.00 0.00 0.00 1.82
441 463 8.999431 ACTGTTCAATAATAAGTGTCGTGATTT 58.001 29.630 0.00 0.00 0.00 2.17
442 464 8.547967 ACTGTTCAATAATAAGTGTCGTGATT 57.452 30.769 0.00 0.00 0.00 2.57
443 465 8.547967 AACTGTTCAATAATAAGTGTCGTGAT 57.452 30.769 0.00 0.00 0.00 3.06
475 497 4.892934 ACAAGGCACTGTCATTTCCTTAAA 59.107 37.500 0.00 0.00 40.86 1.52
476 498 4.469657 ACAAGGCACTGTCATTTCCTTAA 58.530 39.130 0.00 0.00 40.86 1.85
477 499 4.098914 ACAAGGCACTGTCATTTCCTTA 57.901 40.909 0.00 0.00 40.86 2.69
493 515 5.997746 ACATCATTAATCCATCGGTACAAGG 59.002 40.000 0.00 0.00 0.00 3.61
515 537 2.947652 GGGAGTGCATAGTACGAGTACA 59.052 50.000 14.83 2.86 38.48 2.90
516 538 3.003482 CAGGGAGTGCATAGTACGAGTAC 59.997 52.174 5.32 5.32 36.35 2.73
517 539 3.211865 CAGGGAGTGCATAGTACGAGTA 58.788 50.000 0.00 0.00 0.00 2.59
518 540 2.025155 CAGGGAGTGCATAGTACGAGT 58.975 52.381 0.00 0.00 0.00 4.18
519 541 2.025155 ACAGGGAGTGCATAGTACGAG 58.975 52.381 0.00 0.00 0.00 4.18
520 542 1.749063 CACAGGGAGTGCATAGTACGA 59.251 52.381 0.00 0.00 42.15 3.43
546 568 4.213270 CGCACTCTGTCAAAAATGTTCCTA 59.787 41.667 0.00 0.00 0.00 2.94
547 569 3.003689 CGCACTCTGTCAAAAATGTTCCT 59.996 43.478 0.00 0.00 0.00 3.36
548 570 3.243068 ACGCACTCTGTCAAAAATGTTCC 60.243 43.478 0.00 0.00 0.00 3.62
549 571 3.725740 CACGCACTCTGTCAAAAATGTTC 59.274 43.478 0.00 0.00 0.00 3.18
550 572 3.489059 CCACGCACTCTGTCAAAAATGTT 60.489 43.478 0.00 0.00 0.00 2.71
552 574 2.653890 CCACGCACTCTGTCAAAAATG 58.346 47.619 0.00 0.00 0.00 2.32
670 700 1.765657 AGGATGCAGAGAGAGGGCC 60.766 63.158 0.00 0.00 0.00 5.80
702 732 3.886505 GGGAGACGATATATAGGGAGCAG 59.113 52.174 0.00 0.00 0.00 4.24
732 767 2.357517 GTGTGTGGCTGGACCGAG 60.358 66.667 0.00 0.00 43.94 4.63
735 770 1.228245 ATGTGTGTGTGGCTGGACC 60.228 57.895 0.00 0.00 39.84 4.46
746 781 2.930887 GCGGTGATGTACTGATGTGTGT 60.931 50.000 0.00 0.00 37.93 3.72
747 782 1.660607 GCGGTGATGTACTGATGTGTG 59.339 52.381 0.00 0.00 37.93 3.82
748 783 1.275010 TGCGGTGATGTACTGATGTGT 59.725 47.619 0.00 0.00 37.93 3.72
749 784 1.929169 CTGCGGTGATGTACTGATGTG 59.071 52.381 0.00 0.00 37.93 3.21
750 785 1.824852 TCTGCGGTGATGTACTGATGT 59.175 47.619 0.00 0.00 37.93 3.06
751 786 2.196749 GTCTGCGGTGATGTACTGATG 58.803 52.381 0.00 0.00 37.93 3.07
752 787 1.202302 CGTCTGCGGTGATGTACTGAT 60.202 52.381 0.00 0.00 37.93 2.90
753 788 0.170339 CGTCTGCGGTGATGTACTGA 59.830 55.000 0.00 0.00 37.93 3.41
754 789 1.413767 GCGTCTGCGGTGATGTACTG 61.414 60.000 0.00 0.00 38.78 2.74
755 790 1.153823 GCGTCTGCGGTGATGTACT 60.154 57.895 0.00 0.00 38.78 2.73
756 791 2.165301 GGCGTCTGCGGTGATGTAC 61.165 63.158 0.00 0.00 44.10 2.90
757 792 2.183300 GGCGTCTGCGGTGATGTA 59.817 61.111 0.00 0.00 44.10 2.29
774 809 1.626654 AATGCGGCGTGTCTTTCTCG 61.627 55.000 9.37 0.00 36.33 4.04
826 862 1.429148 CCAACGGCTCGGTAATCAGC 61.429 60.000 0.00 0.00 34.65 4.26
883 919 0.324275 AGGACAGAGGACAGAGGAGC 60.324 60.000 0.00 0.00 0.00 4.70
885 921 1.377690 AGAGGACAGAGGACAGAGGA 58.622 55.000 0.00 0.00 0.00 3.71
886 922 2.025793 TGTAGAGGACAGAGGACAGAGG 60.026 54.545 0.00 0.00 32.86 3.69
887 923 3.013921 GTGTAGAGGACAGAGGACAGAG 58.986 54.545 0.00 0.00 39.29 3.35
888 924 2.645297 AGTGTAGAGGACAGAGGACAGA 59.355 50.000 0.00 0.00 39.29 3.41
889 925 3.013921 GAGTGTAGAGGACAGAGGACAG 58.986 54.545 0.00 0.00 39.29 3.51
890 926 2.291024 GGAGTGTAGAGGACAGAGGACA 60.291 54.545 0.00 0.00 39.29 4.02
891 927 2.025699 AGGAGTGTAGAGGACAGAGGAC 60.026 54.545 0.00 0.00 39.29 3.85
905 941 0.853586 AGAGGAGAGGGGAGGAGTGT 60.854 60.000 0.00 0.00 0.00 3.55
926 962 1.173444 TCTATCCTTCTCGGCCGAGC 61.173 60.000 43.44 0.00 41.71 5.03
967 1008 2.282180 CCAAGAACACGGTGGGGG 60.282 66.667 13.48 2.56 0.00 5.40
972 1013 2.113139 CTGCCCCAAGAACACGGT 59.887 61.111 0.00 0.00 0.00 4.83
987 1029 4.193334 TCCATCTCGGCGCGTCTG 62.193 66.667 9.90 6.05 33.14 3.51
1059 1101 2.816672 GCCAAACAGAGGGAAGAAGAAG 59.183 50.000 0.00 0.00 0.00 2.85
1102 1147 2.037641 CAGACTCAGACCAATCCACACA 59.962 50.000 0.00 0.00 0.00 3.72
1103 1148 2.300152 TCAGACTCAGACCAATCCACAC 59.700 50.000 0.00 0.00 0.00 3.82
1136 1181 0.254462 TAACATTGCCTGGCGGATGA 59.746 50.000 29.86 13.98 32.03 2.92
1137 1182 1.267806 GATAACATTGCCTGGCGGATG 59.732 52.381 24.62 24.62 33.21 3.51
1138 1183 1.609208 GATAACATTGCCTGGCGGAT 58.391 50.000 14.98 7.87 0.00 4.18
1140 1185 1.648720 CGATAACATTGCCTGGCGG 59.351 57.895 14.98 8.70 0.00 6.13
1141 1186 1.009675 GCGATAACATTGCCTGGCG 60.010 57.895 14.98 1.99 33.42 5.69
1220 1265 1.541588 GCTCGGCCAAAGAAAACAGAT 59.458 47.619 2.24 0.00 0.00 2.90
1233 1279 2.467826 GCATCACAAGAGCTCGGCC 61.468 63.158 8.37 0.00 0.00 6.13
1236 1282 2.286106 CTCGCATCACAAGAGCTCG 58.714 57.895 8.37 0.00 0.00 5.03
1248 1294 0.673333 TTCCATCGTTGTGCTCGCAT 60.673 50.000 0.00 0.00 0.00 4.73
1251 1297 0.716108 GTCTTCCATCGTTGTGCTCG 59.284 55.000 0.00 0.00 0.00 5.03
1260 1306 1.279271 AGGTTCTTGGGTCTTCCATCG 59.721 52.381 0.00 0.00 46.52 3.84
1268 1314 1.416401 TCAGTCACAGGTTCTTGGGTC 59.584 52.381 0.00 0.00 0.00 4.46
1269 1315 1.507140 TCAGTCACAGGTTCTTGGGT 58.493 50.000 0.00 0.00 0.00 4.51
1270 1316 2.867109 ATCAGTCACAGGTTCTTGGG 57.133 50.000 0.00 0.00 0.00 4.12
1271 1317 3.265791 GCTATCAGTCACAGGTTCTTGG 58.734 50.000 0.00 0.00 0.00 3.61
1272 1318 2.926200 CGCTATCAGTCACAGGTTCTTG 59.074 50.000 0.00 0.00 0.00 3.02
1285 1331 2.159184 TCCAAGAACAGAGCGCTATCAG 60.159 50.000 11.50 0.00 0.00 2.90
1309 1381 0.036010 AATGGTGCGTGGAGAGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
1354 1427 7.822822 AGGTTTGTATACTGACTGATGGTTTAC 59.177 37.037 4.17 0.00 0.00 2.01
1355 1428 7.913789 AGGTTTGTATACTGACTGATGGTTTA 58.086 34.615 4.17 0.00 0.00 2.01
1374 1448 2.192624 CCAACGAAACTGCAAGGTTTG 58.807 47.619 8.65 4.56 45.56 2.93
1375 1449 1.822371 ACCAACGAAACTGCAAGGTTT 59.178 42.857 3.90 3.90 45.56 3.27
1378 1452 0.594796 GCACCAACGAAACTGCAAGG 60.595 55.000 0.00 0.00 39.30 3.61
1380 1454 0.380378 GAGCACCAACGAAACTGCAA 59.620 50.000 0.00 0.00 31.71 4.08
1381 1455 1.771073 CGAGCACCAACGAAACTGCA 61.771 55.000 0.00 0.00 31.71 4.41
1382 1456 1.082756 CGAGCACCAACGAAACTGC 60.083 57.895 0.00 0.00 0.00 4.40
1383 1457 1.082756 GCGAGCACCAACGAAACTG 60.083 57.895 0.00 0.00 0.00 3.16
1384 1458 1.522806 TGCGAGCACCAACGAAACT 60.523 52.632 0.00 0.00 0.00 2.66
1385 1459 1.368850 GTGCGAGCACCAACGAAAC 60.369 57.895 16.66 0.00 40.79 2.78
1386 1460 1.369839 TTGTGCGAGCACCAACGAAA 61.370 50.000 23.31 8.72 45.63 3.46
1387 1461 1.369839 TTTGTGCGAGCACCAACGAA 61.370 50.000 23.31 9.39 45.63 3.85
1390 1464 0.100503 AACTTTGTGCGAGCACCAAC 59.899 50.000 23.31 1.29 45.63 3.77
1394 1468 0.040958 CTCCAACTTTGTGCGAGCAC 60.041 55.000 20.14 20.14 46.33 4.40
1399 1473 1.008538 GGTGCTCCAACTTTGTGCG 60.009 57.895 0.00 0.00 0.00 5.34
1400 1474 2.114638 TGGTGCTCCAACTTTGTGC 58.885 52.632 4.68 0.00 41.25 4.57
1410 1484 2.360801 GTCTGTCTCTAGATGGTGCTCC 59.639 54.545 0.00 0.00 0.00 4.70
1413 1487 2.100584 CCAGTCTGTCTCTAGATGGTGC 59.899 54.545 0.00 0.00 0.00 5.01
1414 1488 2.100584 GCCAGTCTGTCTCTAGATGGTG 59.899 54.545 7.85 0.00 32.58 4.17
1415 1489 2.024464 AGCCAGTCTGTCTCTAGATGGT 60.024 50.000 7.85 0.00 32.58 3.55
1416 1490 2.665165 AGCCAGTCTGTCTCTAGATGG 58.335 52.381 0.00 0.00 32.86 3.51
1417 1491 4.713553 TCTAGCCAGTCTGTCTCTAGATG 58.286 47.826 14.64 0.00 33.07 2.90
1433 1517 2.359230 GCGGCATGGGATCTAGCC 60.359 66.667 0.00 7.79 43.61 3.93
1434 1518 1.963338 GTGCGGCATGGGATCTAGC 60.963 63.158 5.72 0.00 0.00 3.42
1438 1522 2.592861 GGAGTGCGGCATGGGATC 60.593 66.667 5.72 0.00 0.00 3.36
1439 1523 2.288642 AATGGAGTGCGGCATGGGAT 62.289 55.000 5.72 0.00 0.00 3.85
1442 1526 2.802792 CAATGGAGTGCGGCATGG 59.197 61.111 5.72 0.00 0.00 3.66
1490 1605 2.352960 CGAGAAGGCAGGAAAATGTAGC 59.647 50.000 0.00 0.00 0.00 3.58
1503 1618 3.793144 CAAGCACGGCGAGAAGGC 61.793 66.667 16.62 9.02 42.76 4.35
1504 1619 1.021390 AATCAAGCACGGCGAGAAGG 61.021 55.000 16.62 0.00 0.00 3.46
1505 1620 1.640428 TAATCAAGCACGGCGAGAAG 58.360 50.000 16.62 0.95 0.00 2.85
1512 1627 7.282916 CAAAACAAAAGAATAATCAAGCACGG 58.717 34.615 0.00 0.00 0.00 4.94
1519 1634 7.867403 GGTCAGAGCAAAACAAAAGAATAATCA 59.133 33.333 0.00 0.00 0.00 2.57
1521 1636 6.863126 CGGTCAGAGCAAAACAAAAGAATAAT 59.137 34.615 0.00 0.00 0.00 1.28
1522 1637 6.205784 CGGTCAGAGCAAAACAAAAGAATAA 58.794 36.000 0.00 0.00 0.00 1.40
1523 1638 5.278266 CCGGTCAGAGCAAAACAAAAGAATA 60.278 40.000 0.00 0.00 0.00 1.75
1527 1642 2.099098 ACCGGTCAGAGCAAAACAAAAG 59.901 45.455 0.00 0.00 0.00 2.27
1528 1643 2.096248 ACCGGTCAGAGCAAAACAAAA 58.904 42.857 0.00 0.00 0.00 2.44
1530 1645 1.021202 CACCGGTCAGAGCAAAACAA 58.979 50.000 2.59 0.00 0.00 2.83
1532 1647 0.868406 CTCACCGGTCAGAGCAAAAC 59.132 55.000 2.59 0.00 0.00 2.43
1535 1650 0.756294 TTTCTCACCGGTCAGAGCAA 59.244 50.000 8.63 5.59 0.00 3.91
1538 1653 1.134670 GGGATTTCTCACCGGTCAGAG 60.135 57.143 8.63 11.97 0.00 3.35
1560 1675 4.671549 CTGCGGCAACACAGCACG 62.672 66.667 3.44 0.00 45.00 5.34
1573 1689 1.078918 TCCAGAAGGTGATGCTGCG 60.079 57.895 0.00 0.00 35.89 5.18
1579 1695 3.662078 TGATGATCCTCCAGAAGGTGAT 58.338 45.455 0.00 0.00 46.32 3.06
1694 1810 1.375908 GTGTCTGAAGCATGCGGGA 60.376 57.895 13.01 6.45 0.00 5.14
1696 1812 0.952497 ACTGTGTCTGAAGCATGCGG 60.952 55.000 13.01 4.41 0.00 5.69
1698 1814 1.731160 GAGACTGTGTCTGAAGCATGC 59.269 52.381 10.51 10.51 43.53 4.06
1716 1832 4.021894 AGTGGTAGTACAAGAGTGCAAGAG 60.022 45.833 2.06 0.00 32.20 2.85
1717 1833 3.895656 AGTGGTAGTACAAGAGTGCAAGA 59.104 43.478 2.06 0.00 32.20 3.02
1736 1852 6.091577 CGTGTCTATCTATCCTGCTACTAGTG 59.908 46.154 5.39 0.00 0.00 2.74
1749 1865 2.273538 AGTCCGGCGTGTCTATCTAT 57.726 50.000 6.01 0.00 0.00 1.98
1761 1877 6.018913 GCTATACTTTTTAGAGAAAGTCCGGC 60.019 42.308 0.00 6.17 44.30 6.13
1783 1900 2.668212 GGCCGTGTGTTGCTGCTA 60.668 61.111 0.00 0.00 0.00 3.49
1784 1901 4.569180 AGGCCGTGTGTTGCTGCT 62.569 61.111 0.00 0.00 0.00 4.24
1786 1903 2.332514 CAAGGCCGTGTGTTGCTG 59.667 61.111 10.93 0.00 0.00 4.41
1787 1904 2.906897 CCAAGGCCGTGTGTTGCT 60.907 61.111 17.81 0.00 0.00 3.91
1797 1915 4.120331 GTCGTGCATGCCAAGGCC 62.120 66.667 16.68 0.00 41.09 5.19
1803 1921 1.153289 AGGATCAGTCGTGCATGCC 60.153 57.895 16.68 5.63 0.00 4.40
1819 1940 1.770658 TGGAGATGGCATGTAAGGAGG 59.229 52.381 3.81 0.00 0.00 4.30
1822 1943 3.219176 ACATGGAGATGGCATGTAAGG 57.781 47.619 3.81 0.00 37.73 2.69
1826 1952 5.573380 AATAGTACATGGAGATGGCATGT 57.427 39.130 3.81 0.00 41.69 3.21
1840 1966 9.713713 TGCTTTGTGAACTGTAATAATAGTACA 57.286 29.630 0.57 0.57 0.00 2.90
1842 1968 8.879759 GCTGCTTTGTGAACTGTAATAATAGTA 58.120 33.333 0.00 0.00 0.00 1.82
1843 1969 7.607991 AGCTGCTTTGTGAACTGTAATAATAGT 59.392 33.333 0.00 0.00 0.00 2.12
1844 1970 7.978982 AGCTGCTTTGTGAACTGTAATAATAG 58.021 34.615 0.00 0.00 0.00 1.73
1845 1971 7.606073 TGAGCTGCTTTGTGAACTGTAATAATA 59.394 33.333 2.53 0.00 0.00 0.98
1846 1972 6.430925 TGAGCTGCTTTGTGAACTGTAATAAT 59.569 34.615 2.53 0.00 0.00 1.28
1847 1973 5.762711 TGAGCTGCTTTGTGAACTGTAATAA 59.237 36.000 2.53 0.00 0.00 1.40
1848 1974 5.304778 TGAGCTGCTTTGTGAACTGTAATA 58.695 37.500 2.53 0.00 0.00 0.98
1849 1975 4.136796 TGAGCTGCTTTGTGAACTGTAAT 58.863 39.130 2.53 0.00 0.00 1.89
1850 1976 3.540617 TGAGCTGCTTTGTGAACTGTAA 58.459 40.909 2.53 0.00 0.00 2.41
1851 1977 3.133691 CTGAGCTGCTTTGTGAACTGTA 58.866 45.455 2.53 0.00 0.00 2.74
1852 1978 1.945394 CTGAGCTGCTTTGTGAACTGT 59.055 47.619 2.53 0.00 0.00 3.55
1853 1979 1.945394 ACTGAGCTGCTTTGTGAACTG 59.055 47.619 2.53 0.00 0.00 3.16
1854 1980 2.338577 ACTGAGCTGCTTTGTGAACT 57.661 45.000 2.53 0.00 0.00 3.01
1855 1981 3.427161 AAACTGAGCTGCTTTGTGAAC 57.573 42.857 2.53 0.00 0.00 3.18
1856 1982 4.397730 TGTAAAACTGAGCTGCTTTGTGAA 59.602 37.500 2.53 0.00 0.00 3.18
1857 1983 3.944650 TGTAAAACTGAGCTGCTTTGTGA 59.055 39.130 2.53 0.00 0.00 3.58
1858 1984 4.201950 ACTGTAAAACTGAGCTGCTTTGTG 60.202 41.667 2.53 0.00 0.00 3.33
1859 1985 3.947834 ACTGTAAAACTGAGCTGCTTTGT 59.052 39.130 2.53 2.98 0.00 2.83
1860 1986 4.035558 TCACTGTAAAACTGAGCTGCTTTG 59.964 41.667 2.53 2.28 0.00 2.77
1872 1998 4.929211 GCATGGGGATTTTCACTGTAAAAC 59.071 41.667 0.00 0.00 31.50 2.43
1873 1999 4.837860 AGCATGGGGATTTTCACTGTAAAA 59.162 37.500 0.00 0.00 33.15 1.52
1887 2013 1.818959 GCAACTTGCAAGCATGGGGA 61.819 55.000 26.27 0.00 44.26 4.81
1888 2014 1.375013 GCAACTTGCAAGCATGGGG 60.375 57.895 26.27 10.27 44.26 4.96
1889 2015 4.272100 GCAACTTGCAAGCATGGG 57.728 55.556 26.27 11.96 44.26 4.00
1902 2028 3.772060 GATCCAACAGATCCTTGCAAC 57.228 47.619 0.00 0.00 45.00 4.17
1916 2045 1.612462 CCAAGAGCACAGCAGATCCAA 60.612 52.381 0.00 0.00 0.00 3.53
1925 2054 2.947652 CCAATGTATCCCAAGAGCACAG 59.052 50.000 0.00 0.00 0.00 3.66
1927 2056 3.281727 TCCAATGTATCCCAAGAGCAC 57.718 47.619 0.00 0.00 0.00 4.40
1930 2059 5.066893 CACATGTTCCAATGTATCCCAAGAG 59.933 44.000 0.00 0.00 38.75 2.85
1931 2060 4.949238 CACATGTTCCAATGTATCCCAAGA 59.051 41.667 0.00 0.00 38.75 3.02
1933 2062 4.928263 TCACATGTTCCAATGTATCCCAA 58.072 39.130 0.00 0.00 38.75 4.12
1936 2065 3.002656 CGCTCACATGTTCCAATGTATCC 59.997 47.826 0.00 0.00 38.75 2.59
1937 2066 3.871006 TCGCTCACATGTTCCAATGTATC 59.129 43.478 0.00 0.00 38.75 2.24
1938 2067 3.872696 TCGCTCACATGTTCCAATGTAT 58.127 40.909 0.00 0.00 38.75 2.29
1945 2076 1.195448 CACTGTTCGCTCACATGTTCC 59.805 52.381 0.00 0.00 0.00 3.62
1946 2077 2.135139 TCACTGTTCGCTCACATGTTC 58.865 47.619 0.00 0.00 0.00 3.18
1963 2094 5.276631 CCACACGCCAAGTTAAAAATTTCAC 60.277 40.000 0.00 0.00 0.00 3.18
1964 2095 4.806247 CCACACGCCAAGTTAAAAATTTCA 59.194 37.500 0.00 0.00 0.00 2.69
1965 2096 4.210328 CCCACACGCCAAGTTAAAAATTTC 59.790 41.667 0.00 0.00 0.00 2.17
1966 2097 4.123506 CCCACACGCCAAGTTAAAAATTT 58.876 39.130 0.00 0.00 0.00 1.82
1967 2098 3.133183 ACCCACACGCCAAGTTAAAAATT 59.867 39.130 0.00 0.00 0.00 1.82
1968 2099 2.696187 ACCCACACGCCAAGTTAAAAAT 59.304 40.909 0.00 0.00 0.00 1.82
1969 2100 2.100989 ACCCACACGCCAAGTTAAAAA 58.899 42.857 0.00 0.00 0.00 1.94
1970 2101 1.765230 ACCCACACGCCAAGTTAAAA 58.235 45.000 0.00 0.00 0.00 1.52
1971 2102 2.158784 ACTACCCACACGCCAAGTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
1972 2103 1.417145 ACTACCCACACGCCAAGTTAA 59.583 47.619 0.00 0.00 0.00 2.01
1973 2104 1.050204 ACTACCCACACGCCAAGTTA 58.950 50.000 0.00 0.00 0.00 2.24
1974 2105 0.181824 AACTACCCACACGCCAAGTT 59.818 50.000 0.00 0.00 0.00 2.66
1975 2106 0.181824 AAACTACCCACACGCCAAGT 59.818 50.000 0.00 0.00 0.00 3.16
1976 2107 1.265905 GAAAACTACCCACACGCCAAG 59.734 52.381 0.00 0.00 0.00 3.61
1977 2108 1.310904 GAAAACTACCCACACGCCAA 58.689 50.000 0.00 0.00 0.00 4.52
1978 2109 0.535553 GGAAAACTACCCACACGCCA 60.536 55.000 0.00 0.00 0.00 5.69
1979 2110 1.571215 CGGAAAACTACCCACACGCC 61.571 60.000 0.00 0.00 0.00 5.68
1980 2111 0.881600 ACGGAAAACTACCCACACGC 60.882 55.000 0.00 0.00 0.00 5.34
1981 2112 0.863144 CACGGAAAACTACCCACACG 59.137 55.000 0.00 0.00 0.00 4.49
1982 2113 0.589708 GCACGGAAAACTACCCACAC 59.410 55.000 0.00 0.00 0.00 3.82
1983 2114 0.180642 TGCACGGAAAACTACCCACA 59.819 50.000 0.00 0.00 0.00 4.17
1984 2115 0.872388 CTGCACGGAAAACTACCCAC 59.128 55.000 0.00 0.00 0.00 4.61
1985 2116 0.759959 TCTGCACGGAAAACTACCCA 59.240 50.000 0.00 0.00 0.00 4.51
1986 2117 1.804748 CTTCTGCACGGAAAACTACCC 59.195 52.381 0.00 0.00 0.00 3.69
1987 2118 2.762745 TCTTCTGCACGGAAAACTACC 58.237 47.619 0.00 0.00 0.00 3.18
1988 2119 4.034742 TGTTTCTTCTGCACGGAAAACTAC 59.965 41.667 7.80 0.17 32.00 2.73
1989 2120 4.034742 GTGTTTCTTCTGCACGGAAAACTA 59.965 41.667 7.80 0.00 32.00 2.24
1990 2121 3.013921 TGTTTCTTCTGCACGGAAAACT 58.986 40.909 7.80 0.00 32.00 2.66
1991 2122 3.105937 GTGTTTCTTCTGCACGGAAAAC 58.894 45.455 5.82 4.91 32.00 2.43
1992 2123 3.013921 AGTGTTTCTTCTGCACGGAAAA 58.986 40.909 5.82 0.00 38.10 2.29
1993 2124 2.354510 CAGTGTTTCTTCTGCACGGAAA 59.645 45.455 0.00 0.00 38.10 3.13
1994 2125 1.939934 CAGTGTTTCTTCTGCACGGAA 59.060 47.619 0.00 0.00 38.10 4.30
1995 2126 1.581934 CAGTGTTTCTTCTGCACGGA 58.418 50.000 0.00 0.00 38.10 4.69
2025 2156 1.078848 AGCCAACTCACGCCTGATC 60.079 57.895 0.00 0.00 0.00 2.92
2027 2158 2.343758 GAGCCAACTCACGCCTGA 59.656 61.111 0.00 0.00 42.93 3.86
2120 2295 4.217159 CCGGGGCCGTAGTACTGC 62.217 72.222 5.39 8.09 37.81 4.40
2127 2309 3.730028 TATCGTTCCCGGGGCCGTA 62.730 63.158 23.50 14.10 37.81 4.02
2132 2314 2.098443 CACAAATTTATCGTTCCCGGGG 59.902 50.000 23.50 6.77 33.95 5.73
2264 2454 7.458397 ACAGGATGAACTAATAACTTGTCCAA 58.542 34.615 0.00 0.00 39.69 3.53
2268 2458 7.038302 TCCTGACAGGATGAACTAATAACTTGT 60.038 37.037 20.74 0.00 40.06 3.16
2269 2459 7.331026 TCCTGACAGGATGAACTAATAACTTG 58.669 38.462 20.74 0.00 40.06 3.16
2285 2475 3.981071 TGATTGGTTAGTCCTGACAGG 57.019 47.619 15.99 15.99 36.46 4.00
2286 2476 6.037610 GCTTATTGATTGGTTAGTCCTGACAG 59.962 42.308 0.00 0.00 37.07 3.51
2287 2477 5.880332 GCTTATTGATTGGTTAGTCCTGACA 59.120 40.000 0.00 0.00 37.07 3.58
2289 2479 6.061022 TGCTTATTGATTGGTTAGTCCTGA 57.939 37.500 0.00 0.00 37.07 3.86
2290 2480 6.757897 TTGCTTATTGATTGGTTAGTCCTG 57.242 37.500 0.00 0.00 37.07 3.86
2291 2481 7.961326 ATTTGCTTATTGATTGGTTAGTCCT 57.039 32.000 0.00 0.00 37.07 3.85
2295 2485 9.019764 CGGTTAATTTGCTTATTGATTGGTTAG 57.980 33.333 0.00 0.00 0.00 2.34
2296 2486 8.740906 TCGGTTAATTTGCTTATTGATTGGTTA 58.259 29.630 0.00 0.00 0.00 2.85
2299 2489 6.697019 CCTCGGTTAATTTGCTTATTGATTGG 59.303 38.462 0.00 0.00 0.00 3.16
2300 2490 6.697019 CCCTCGGTTAATTTGCTTATTGATTG 59.303 38.462 0.00 0.00 0.00 2.67
2302 2492 5.301805 CCCCTCGGTTAATTTGCTTATTGAT 59.698 40.000 0.00 0.00 0.00 2.57
2303 2493 4.642885 CCCCTCGGTTAATTTGCTTATTGA 59.357 41.667 0.00 0.00 0.00 2.57
2304 2494 4.642885 TCCCCTCGGTTAATTTGCTTATTG 59.357 41.667 0.00 0.00 0.00 1.90
2305 2495 4.862371 TCCCCTCGGTTAATTTGCTTATT 58.138 39.130 0.00 0.00 0.00 1.40
2306 2496 4.513406 TCCCCTCGGTTAATTTGCTTAT 57.487 40.909 0.00 0.00 0.00 1.73
2310 2500 3.945981 TTTTCCCCTCGGTTAATTTGC 57.054 42.857 0.00 0.00 0.00 3.68
2313 2503 5.185056 CAGTTGATTTTCCCCTCGGTTAATT 59.815 40.000 0.00 0.00 0.00 1.40
2314 2504 4.705023 CAGTTGATTTTCCCCTCGGTTAAT 59.295 41.667 0.00 0.00 0.00 1.40
2316 2506 3.328343 TCAGTTGATTTTCCCCTCGGTTA 59.672 43.478 0.00 0.00 0.00 2.85
2317 2507 2.107552 TCAGTTGATTTTCCCCTCGGTT 59.892 45.455 0.00 0.00 0.00 4.44
2318 2508 1.702957 TCAGTTGATTTTCCCCTCGGT 59.297 47.619 0.00 0.00 0.00 4.69
2324 2514 6.868339 CAGTTAAACCATCAGTTGATTTTCCC 59.132 38.462 0.00 0.00 39.19 3.97
2326 2516 9.132521 CATCAGTTAAACCATCAGTTGATTTTC 57.867 33.333 0.00 0.00 39.19 2.29
2330 2520 6.248433 ACCATCAGTTAAACCATCAGTTGAT 58.752 36.000 0.00 0.00 39.19 2.57
2332 2522 5.964958 ACCATCAGTTAAACCATCAGTTG 57.035 39.130 0.00 0.00 39.19 3.16
2333 2523 5.243730 CCAACCATCAGTTAAACCATCAGTT 59.756 40.000 0.00 0.00 37.04 3.16
2344 2534 2.916269 TCATCCACCCAACCATCAGTTA 59.084 45.455 0.00 0.00 36.18 2.24
2345 2535 1.710244 TCATCCACCCAACCATCAGTT 59.290 47.619 0.00 0.00 40.16 3.16
2346 2536 1.371467 TCATCCACCCAACCATCAGT 58.629 50.000 0.00 0.00 0.00 3.41
2347 2537 2.372264 CTTCATCCACCCAACCATCAG 58.628 52.381 0.00 0.00 0.00 2.90
2350 2540 1.084018 ACCTTCATCCACCCAACCAT 58.916 50.000 0.00 0.00 0.00 3.55
2489 2680 4.864334 CAGGCCCAGCATCCGGAC 62.864 72.222 6.12 0.00 0.00 4.79
2522 2713 3.499737 CACCGTGGCGAAGATGGC 61.500 66.667 0.00 0.00 0.00 4.40
2656 2847 4.000557 GTGTGTCTGCGTGCGTGG 62.001 66.667 0.00 0.00 0.00 4.94
2741 2940 2.967076 AACCTCTGCGCACACACG 60.967 61.111 5.66 0.00 0.00 4.49
2745 2944 2.395988 ATCACCAACCTCTGCGCACA 62.396 55.000 5.66 0.00 0.00 4.57
2893 3097 1.856873 ATCTTGGGTTGCCAGGGGA 60.857 57.895 0.00 0.00 0.00 4.81
2904 3108 1.141657 ACATGTCGATGGGATCTTGGG 59.858 52.381 0.00 0.00 33.39 4.12
2992 3267 2.315925 TCAATGGCTACAGCTAGCAC 57.684 50.000 18.83 0.20 46.58 4.40
3017 3292 1.202580 CCATCCGCTCAAAGGACTAGG 60.203 57.143 0.00 0.00 41.10 3.02
3018 3293 1.757118 TCCATCCGCTCAAAGGACTAG 59.243 52.381 0.00 0.00 41.10 2.57
3019 3294 1.860641 TCCATCCGCTCAAAGGACTA 58.139 50.000 0.00 0.00 41.10 2.59
3020 3295 1.207791 ATCCATCCGCTCAAAGGACT 58.792 50.000 0.00 0.00 41.10 3.85
3021 3296 1.672881 CAATCCATCCGCTCAAAGGAC 59.327 52.381 0.00 0.00 41.10 3.85
3022 3297 1.408683 CCAATCCATCCGCTCAAAGGA 60.409 52.381 0.00 0.00 42.69 3.36
3023 3298 1.027357 CCAATCCATCCGCTCAAAGG 58.973 55.000 0.00 0.00 0.00 3.11
3024 3299 1.027357 CCCAATCCATCCGCTCAAAG 58.973 55.000 0.00 0.00 0.00 2.77
3025 3300 0.623194 TCCCAATCCATCCGCTCAAA 59.377 50.000 0.00 0.00 0.00 2.69
3026 3301 0.846015 ATCCCAATCCATCCGCTCAA 59.154 50.000 0.00 0.00 0.00 3.02
3027 3302 1.625315 CTATCCCAATCCATCCGCTCA 59.375 52.381 0.00 0.00 0.00 4.26
3028 3303 1.625818 ACTATCCCAATCCATCCGCTC 59.374 52.381 0.00 0.00 0.00 5.03
3029 3304 1.349026 CACTATCCCAATCCATCCGCT 59.651 52.381 0.00 0.00 0.00 5.52
3030 3305 1.813513 CACTATCCCAATCCATCCGC 58.186 55.000 0.00 0.00 0.00 5.54
3031 3306 1.611673 GGCACTATCCCAATCCATCCG 60.612 57.143 0.00 0.00 0.00 4.18
3032 3307 1.272147 GGGCACTATCCCAATCCATCC 60.272 57.143 0.00 0.00 45.82 3.51
3033 3308 2.206576 GGGCACTATCCCAATCCATC 57.793 55.000 0.00 0.00 45.82 3.51
3041 3316 0.466189 CATGTGGTGGGCACTATCCC 60.466 60.000 0.00 0.00 46.73 3.85
3042 3317 1.103398 GCATGTGGTGGGCACTATCC 61.103 60.000 0.00 0.00 0.00 2.59
3043 3318 0.394216 TGCATGTGGTGGGCACTATC 60.394 55.000 0.00 0.00 31.58 2.08
3044 3319 0.039472 TTGCATGTGGTGGGCACTAT 59.961 50.000 0.00 0.00 37.26 2.12
3045 3320 0.893270 GTTGCATGTGGTGGGCACTA 60.893 55.000 0.00 0.00 37.26 2.74
3046 3321 2.198150 TTGCATGTGGTGGGCACT 59.802 55.556 0.00 0.00 37.26 4.40
3047 3322 2.339712 GTTGCATGTGGTGGGCAC 59.660 61.111 0.00 0.00 37.26 5.01
3048 3323 3.293714 CGTTGCATGTGGTGGGCA 61.294 61.111 0.00 0.00 35.41 5.36
3049 3324 4.722855 GCGTTGCATGTGGTGGGC 62.723 66.667 0.00 0.00 0.00 5.36
3050 3325 4.054825 GGCGTTGCATGTGGTGGG 62.055 66.667 0.00 0.00 0.00 4.61
3051 3326 4.054825 GGGCGTTGCATGTGGTGG 62.055 66.667 0.00 0.00 0.00 4.61
3052 3327 3.271706 CTGGGCGTTGCATGTGGTG 62.272 63.158 0.00 0.00 0.00 4.17
3053 3328 2.985282 CTGGGCGTTGCATGTGGT 60.985 61.111 0.00 0.00 0.00 4.16
3054 3329 4.424566 GCTGGGCGTTGCATGTGG 62.425 66.667 0.00 0.00 0.00 4.17
3112 3444 8.872845 CAGCTTGTTTTAACTTTTGAATGAACT 58.127 29.630 0.00 0.00 0.00 3.01
3113 3445 8.868916 TCAGCTTGTTTTAACTTTTGAATGAAC 58.131 29.630 0.00 0.00 0.00 3.18
3114 3446 8.868916 GTCAGCTTGTTTTAACTTTTGAATGAA 58.131 29.630 0.00 0.00 0.00 2.57
3115 3447 8.031864 TGTCAGCTTGTTTTAACTTTTGAATGA 58.968 29.630 0.00 0.00 0.00 2.57
3116 3448 8.183830 TGTCAGCTTGTTTTAACTTTTGAATG 57.816 30.769 0.00 0.00 0.00 2.67
3117 3449 8.770438 TTGTCAGCTTGTTTTAACTTTTGAAT 57.230 26.923 0.00 0.00 0.00 2.57
3127 3459 9.646427 AAAAACATTACTTGTCAGCTTGTTTTA 57.354 25.926 16.30 0.00 42.00 1.52
3142 3477 1.784115 CGCGCGCGTAAAAACATTACT 60.784 47.619 42.49 0.00 34.35 2.24
3320 3831 2.996395 CCCATCTCCACTGCAGCT 59.004 61.111 15.27 0.00 0.00 4.24
3323 3834 3.002583 TCGCCCATCTCCACTGCA 61.003 61.111 0.00 0.00 0.00 4.41
3326 3837 3.474570 GCCTCGCCCATCTCCACT 61.475 66.667 0.00 0.00 0.00 4.00
3384 3895 3.411351 CTTGTCGACAACGGCCGG 61.411 66.667 31.76 15.62 43.97 6.13
3385 3896 3.411351 CCTTGTCGACAACGGCCG 61.411 66.667 26.53 26.86 43.97 6.13
3427 3938 0.947660 TGCAAGCTCTCTCTGCAACG 60.948 55.000 7.55 0.00 32.17 4.10
3429 3940 1.450025 CATGCAAGCTCTCTCTGCAA 58.550 50.000 13.62 0.00 39.04 4.08
3430 3941 0.392595 CCATGCAAGCTCTCTCTGCA 60.393 55.000 12.15 12.15 39.91 4.41
3431 3942 0.107800 TCCATGCAAGCTCTCTCTGC 60.108 55.000 0.21 0.21 0.00 4.26
3441 3952 0.803117 CTGCTGTCACTCCATGCAAG 59.197 55.000 0.00 0.00 33.07 4.01
3467 3978 5.898174 TCTACTAACTAATTAAGCAGCGCA 58.102 37.500 11.47 0.00 0.00 6.09
3468 3979 5.107798 GCTCTACTAACTAATTAAGCAGCGC 60.108 44.000 0.00 0.00 0.00 5.92
3513 4024 1.620822 AATCAACAAGGCAGACACCC 58.379 50.000 0.00 0.00 0.00 4.61
3553 4064 3.472652 TCTTTCTGGCAAATGTACGTGT 58.527 40.909 0.00 0.00 0.00 4.49
3554 4065 4.481930 TTCTTTCTGGCAAATGTACGTG 57.518 40.909 0.00 0.00 0.00 4.49
3590 4101 2.679716 CTGGCCTTTGGGGAGAGG 59.320 66.667 3.32 0.00 37.23 3.69
3626 4145 6.202954 CAGTTTGAGATTTTCGGAGTACTGTT 59.797 38.462 0.00 0.00 0.00 3.16
3649 4168 6.545504 AGTAATTCACACTTGCAGTTACAG 57.454 37.500 0.00 0.00 0.00 2.74
3671 4190 3.006323 ACACAGAAACAGAGCAGAGGTAG 59.994 47.826 0.00 0.00 0.00 3.18
3672 4191 2.965831 ACACAGAAACAGAGCAGAGGTA 59.034 45.455 0.00 0.00 0.00 3.08
3673 4192 1.765314 ACACAGAAACAGAGCAGAGGT 59.235 47.619 0.00 0.00 0.00 3.85
3714 4233 5.200368 TCTTTCAGGCAGAAACCAAATTC 57.800 39.130 0.44 0.00 41.17 2.17
3717 4236 4.740334 GCAATCTTTCAGGCAGAAACCAAA 60.740 41.667 0.44 0.00 41.17 3.28
3768 4287 1.900603 CCTATATAACACGTACGCGCG 59.099 52.381 30.96 30.96 42.83 6.86
3769 4288 1.645751 GCCTATATAACACGTACGCGC 59.354 52.381 16.72 0.00 42.83 6.86
4190 4721 6.273071 CACGTCTCTGGTGTGATAATATTGA 58.727 40.000 0.00 0.00 35.66 2.57
4320 4851 4.211374 CACGTAAGCAAGCTACTGTTTCTT 59.789 41.667 0.00 0.00 45.62 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.