Multiple sequence alignment - TraesCS3A01G406900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G406900 chr3A 100.000 3645 0 0 1 3645 651961190 651964834 0.000000e+00 6732.0
1 TraesCS3A01G406900 chr3A 92.308 2808 156 27 856 3645 651648626 651651391 0.000000e+00 3934.0
2 TraesCS3A01G406900 chr3A 91.468 1934 96 27 767 2671 651996052 651997945 0.000000e+00 2593.0
3 TraesCS3A01G406900 chr3A 83.026 271 30 7 503 773 651994941 651995195 7.870000e-57 231.0
4 TraesCS3A01G406900 chr3A 88.312 77 7 2 773 847 651648515 651648591 1.390000e-14 91.6
5 TraesCS3A01G406900 chr3D 91.735 2916 171 36 779 3645 516670996 516673890 0.000000e+00 3986.0
6 TraesCS3A01G406900 chr3D 96.344 848 31 0 1824 2671 516856631 516857478 0.000000e+00 1395.0
7 TraesCS3A01G406900 chr3D 89.732 1081 61 26 725 1772 516855385 516856448 0.000000e+00 1336.0
8 TraesCS3A01G406900 chr3D 89.151 212 11 4 492 696 516855183 516855389 1.680000e-63 254.0
9 TraesCS3A01G406900 chr3D 78.667 150 25 6 3368 3514 266668750 266668605 3.880000e-15 93.5
10 TraesCS3A01G406900 chr3D 89.855 69 6 1 3045 3113 436022222 436022289 1.800000e-13 87.9
11 TraesCS3A01G406900 chr3D 87.838 74 7 1 3049 3120 481803127 481803054 6.480000e-13 86.1
12 TraesCS3A01G406900 chr3D 80.357 112 17 3 2929 3035 523441132 523441021 3.020000e-11 80.5
13 TraesCS3A01G406900 chr3B 91.452 2913 173 36 791 3645 680677203 680674309 0.000000e+00 3930.0
14 TraesCS3A01G406900 chr3B 92.706 2029 105 21 779 2771 680733085 680731064 0.000000e+00 2887.0
15 TraesCS3A01G406900 chr3B 90.558 2044 113 33 691 2671 680478366 680476340 0.000000e+00 2632.0
16 TraesCS3A01G406900 chr3B 78.590 383 75 6 3253 3629 37640456 37640075 2.810000e-61 246.0
17 TraesCS3A01G406900 chr3B 85.294 102 15 0 2931 3032 780693644 780693745 4.980000e-19 106.0
18 TraesCS3A01G406900 chr3B 89.552 67 7 0 3049 3115 736943513 736943447 6.480000e-13 86.1
19 TraesCS3A01G406900 chr3B 83.908 87 10 3 105 190 31410650 31410733 3.020000e-11 80.5
20 TraesCS3A01G406900 chr7D 90.644 1678 125 16 999 2671 502231436 502233086 0.000000e+00 2200.0
21 TraesCS3A01G406900 chr7D 76.393 305 59 6 3216 3518 212887857 212887564 6.300000e-33 152.0
22 TraesCS3A01G406900 chr7D 87.013 77 9 1 2965 3041 210023365 210023440 6.480000e-13 86.1
23 TraesCS3A01G406900 chr1A 85.059 763 109 4 1869 2627 460281706 460282467 0.000000e+00 773.0
24 TraesCS3A01G406900 chr1A 73.926 326 61 16 183 490 256950763 256950444 3.850000e-20 110.0
25 TraesCS3A01G406900 chr5D 83.051 531 90 0 1223 1753 192537909 192538439 1.970000e-132 483.0
26 TraesCS3A01G406900 chr2D 90.291 103 10 0 168 270 327756875 327756773 6.350000e-28 135.0
27 TraesCS3A01G406900 chr2D 75.113 221 45 7 3432 3645 58849633 58849416 1.080000e-15 95.3
28 TraesCS3A01G406900 chr2D 85.057 87 10 3 84 169 131117455 131117371 6.480000e-13 86.1
29 TraesCS3A01G406900 chr7B 84.348 115 15 3 3532 3645 289229511 289229623 3.850000e-20 110.0
30 TraesCS3A01G406900 chr7B 76.440 191 34 6 84 267 149965585 149965771 3.880000e-15 93.5
31 TraesCS3A01G406900 chr7B 93.548 62 4 0 3049 3110 588495233 588495294 3.880000e-15 93.5
32 TraesCS3A01G406900 chr7B 81.081 111 17 2 2929 3035 634277351 634277241 6.480000e-13 86.1
33 TraesCS3A01G406900 chr7B 86.667 75 9 1 85 158 606065847 606065921 8.390000e-12 82.4
34 TraesCS3A01G406900 chr2A 87.234 94 12 0 177 270 433368130 433368037 1.380000e-19 108.0
35 TraesCS3A01G406900 chr2A 77.000 200 27 9 1 182 433368358 433368160 3.000000e-16 97.1
36 TraesCS3A01G406900 chr1D 92.424 66 5 0 3051 3116 487907305 487907240 1.080000e-15 95.3
37 TraesCS3A01G406900 chr6B 76.410 195 28 10 5 182 30650292 30650099 5.010000e-14 89.8
38 TraesCS3A01G406900 chr6B 75.490 204 28 14 5 190 30721653 30721454 3.020000e-11 80.5
39 TraesCS3A01G406900 chr4D 90.000 70 6 1 105 173 46491966 46492035 5.010000e-14 89.8
40 TraesCS3A01G406900 chr4D 81.553 103 13 4 2929 3025 75761794 75761896 3.020000e-11 80.5
41 TraesCS3A01G406900 chr1B 85.057 87 10 2 3540 3623 296681067 296680981 6.480000e-13 86.1
42 TraesCS3A01G406900 chr1B 83.544 79 11 2 105 182 13181726 13181649 5.050000e-09 73.1
43 TraesCS3A01G406900 chr6D 87.671 73 7 2 3049 3120 144741147 144741076 2.330000e-12 84.2
44 TraesCS3A01G406900 chr6A 87.500 72 9 0 3413 3484 60092892 60092821 2.330000e-12 84.2
45 TraesCS3A01G406900 chr5B 80.952 105 16 2 2938 3038 299912462 299912358 3.020000e-11 80.5
46 TraesCS3A01G406900 chr5A 85.526 76 9 2 108 182 461889500 461889426 1.090000e-10 78.7
47 TraesCS3A01G406900 chr5A 86.111 72 10 0 3574 3645 693294848 693294777 1.090000e-10 78.7
48 TraesCS3A01G406900 chr7A 74.866 187 38 6 3277 3456 732739902 732740086 3.900000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G406900 chr3A 651961190 651964834 3644 False 6732.0 6732 100.000000 1 3645 1 chr3A.!!$F1 3644
1 TraesCS3A01G406900 chr3A 651648515 651651391 2876 False 2012.8 3934 90.310000 773 3645 2 chr3A.!!$F2 2872
2 TraesCS3A01G406900 chr3A 651994941 651997945 3004 False 1412.0 2593 87.247000 503 2671 2 chr3A.!!$F3 2168
3 TraesCS3A01G406900 chr3D 516670996 516673890 2894 False 3986.0 3986 91.735000 779 3645 1 chr3D.!!$F2 2866
4 TraesCS3A01G406900 chr3D 516855183 516857478 2295 False 995.0 1395 91.742333 492 2671 3 chr3D.!!$F3 2179
5 TraesCS3A01G406900 chr3B 680674309 680677203 2894 True 3930.0 3930 91.452000 791 3645 1 chr3B.!!$R3 2854
6 TraesCS3A01G406900 chr3B 680731064 680733085 2021 True 2887.0 2887 92.706000 779 2771 1 chr3B.!!$R4 1992
7 TraesCS3A01G406900 chr3B 680476340 680478366 2026 True 2632.0 2632 90.558000 691 2671 1 chr3B.!!$R2 1980
8 TraesCS3A01G406900 chr7D 502231436 502233086 1650 False 2200.0 2200 90.644000 999 2671 1 chr7D.!!$F2 1672
9 TraesCS3A01G406900 chr1A 460281706 460282467 761 False 773.0 773 85.059000 1869 2627 1 chr1A.!!$F1 758
10 TraesCS3A01G406900 chr5D 192537909 192538439 530 False 483.0 483 83.051000 1223 1753 1 chr5D.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.034670 AGAGCCAAAGCCACCAGATC 60.035 55.0 0.00 0.0 41.25 2.75 F
459 460 0.034767 GGCGGCTAGGTTTAGGGTTT 60.035 55.0 0.00 0.0 0.00 3.27 F
730 747 0.250234 GACAGACAGGCATGCAGGTA 59.750 55.0 21.36 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 2059 2.852449 TGAGATGAGGCAGGGGTTTTAT 59.148 45.455 0.00 0.00 0.00 1.40 R
1796 2975 3.334691 TGATCTAGGGTTTGCTTTCGTG 58.665 45.455 0.00 0.00 0.00 4.35 R
2700 3896 2.362077 TGAAGGGCAAGAACTTCTTTGC 59.638 45.455 0.92 8.78 42.67 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.271816 CGAGAGGGATCCCGCACG 62.272 72.222 32.36 32.36 42.02 5.34
20 21 4.593864 GAGAGGGATCCCGCACGC 62.594 72.222 33.08 21.49 41.95 5.34
22 23 4.162690 GAGGGATCCCGCACGCTT 62.163 66.667 28.05 7.98 41.95 4.68
23 24 4.162690 AGGGATCCCGCACGCTTC 62.163 66.667 25.48 0.00 41.95 3.86
24 25 4.162690 GGGATCCCGCACGCTTCT 62.163 66.667 17.02 0.00 0.00 2.85
25 26 2.586357 GGATCCCGCACGCTTCTC 60.586 66.667 0.00 0.00 0.00 2.87
26 27 2.184322 GATCCCGCACGCTTCTCA 59.816 61.111 0.00 0.00 0.00 3.27
27 28 2.125512 ATCCCGCACGCTTCTCAC 60.126 61.111 0.00 0.00 0.00 3.51
28 29 3.665675 ATCCCGCACGCTTCTCACC 62.666 63.158 0.00 0.00 0.00 4.02
29 30 4.379243 CCCGCACGCTTCTCACCT 62.379 66.667 0.00 0.00 0.00 4.00
30 31 2.357517 CCGCACGCTTCTCACCTT 60.358 61.111 0.00 0.00 0.00 3.50
31 32 1.961277 CCGCACGCTTCTCACCTTT 60.961 57.895 0.00 0.00 0.00 3.11
32 33 1.507141 CCGCACGCTTCTCACCTTTT 61.507 55.000 0.00 0.00 0.00 2.27
33 34 0.307760 CGCACGCTTCTCACCTTTTT 59.692 50.000 0.00 0.00 0.00 1.94
34 35 1.758783 GCACGCTTCTCACCTTTTTG 58.241 50.000 0.00 0.00 0.00 2.44
35 36 1.065551 GCACGCTTCTCACCTTTTTGT 59.934 47.619 0.00 0.00 0.00 2.83
36 37 2.479560 GCACGCTTCTCACCTTTTTGTT 60.480 45.455 0.00 0.00 0.00 2.83
37 38 3.769536 CACGCTTCTCACCTTTTTGTTT 58.230 40.909 0.00 0.00 0.00 2.83
38 39 3.791353 CACGCTTCTCACCTTTTTGTTTC 59.209 43.478 0.00 0.00 0.00 2.78
39 40 3.442273 ACGCTTCTCACCTTTTTGTTTCA 59.558 39.130 0.00 0.00 0.00 2.69
40 41 4.082463 ACGCTTCTCACCTTTTTGTTTCAA 60.082 37.500 0.00 0.00 0.00 2.69
41 42 4.862018 CGCTTCTCACCTTTTTGTTTCAAA 59.138 37.500 0.00 0.00 0.00 2.69
42 43 5.220209 CGCTTCTCACCTTTTTGTTTCAAAC 60.220 40.000 0.00 0.00 0.00 2.93
43 44 5.063438 GCTTCTCACCTTTTTGTTTCAAACC 59.937 40.000 0.00 0.00 0.00 3.27
44 45 5.730296 TCTCACCTTTTTGTTTCAAACCA 57.270 34.783 0.00 0.00 0.00 3.67
45 46 6.102897 TCTCACCTTTTTGTTTCAAACCAA 57.897 33.333 0.00 0.00 0.00 3.67
46 47 6.706295 TCTCACCTTTTTGTTTCAAACCAAT 58.294 32.000 0.00 0.00 0.00 3.16
47 48 6.816140 TCTCACCTTTTTGTTTCAAACCAATC 59.184 34.615 0.00 0.00 0.00 2.67
48 49 5.877564 TCACCTTTTTGTTTCAAACCAATCC 59.122 36.000 0.00 0.00 0.00 3.01
49 50 5.645497 CACCTTTTTGTTTCAAACCAATCCA 59.355 36.000 0.00 0.00 0.00 3.41
50 51 5.879777 ACCTTTTTGTTTCAAACCAATCCAG 59.120 36.000 0.00 0.00 0.00 3.86
51 52 6.112058 CCTTTTTGTTTCAAACCAATCCAGA 58.888 36.000 0.00 0.00 0.00 3.86
52 53 6.258507 CCTTTTTGTTTCAAACCAATCCAGAG 59.741 38.462 0.00 0.00 0.00 3.35
53 54 4.320608 TTGTTTCAAACCAATCCAGAGC 57.679 40.909 0.00 0.00 0.00 4.09
54 55 2.627699 TGTTTCAAACCAATCCAGAGCC 59.372 45.455 0.00 0.00 0.00 4.70
55 56 2.627699 GTTTCAAACCAATCCAGAGCCA 59.372 45.455 0.00 0.00 0.00 4.75
56 57 2.673775 TCAAACCAATCCAGAGCCAA 57.326 45.000 0.00 0.00 0.00 4.52
57 58 2.956132 TCAAACCAATCCAGAGCCAAA 58.044 42.857 0.00 0.00 0.00 3.28
58 59 2.892852 TCAAACCAATCCAGAGCCAAAG 59.107 45.455 0.00 0.00 0.00 2.77
59 60 1.260544 AACCAATCCAGAGCCAAAGC 58.739 50.000 0.00 0.00 40.32 3.51
60 61 0.613012 ACCAATCCAGAGCCAAAGCC 60.613 55.000 0.00 0.00 41.25 4.35
61 62 0.612732 CCAATCCAGAGCCAAAGCCA 60.613 55.000 0.00 0.00 41.25 4.75
62 63 0.529378 CAATCCAGAGCCAAAGCCAC 59.471 55.000 0.00 0.00 41.25 5.01
63 64 0.613012 AATCCAGAGCCAAAGCCACC 60.613 55.000 0.00 0.00 41.25 4.61
64 65 1.792757 ATCCAGAGCCAAAGCCACCA 61.793 55.000 0.00 0.00 41.25 4.17
65 66 1.975407 CCAGAGCCAAAGCCACCAG 60.975 63.158 0.00 0.00 41.25 4.00
66 67 1.073722 CAGAGCCAAAGCCACCAGA 59.926 57.895 0.00 0.00 41.25 3.86
67 68 0.323178 CAGAGCCAAAGCCACCAGAT 60.323 55.000 0.00 0.00 41.25 2.90
68 69 0.034670 AGAGCCAAAGCCACCAGATC 60.035 55.000 0.00 0.00 41.25 2.75
69 70 1.372087 GAGCCAAAGCCACCAGATCG 61.372 60.000 0.00 0.00 41.25 3.69
70 71 3.056313 GCCAAAGCCACCAGATCGC 62.056 63.158 0.00 0.00 0.00 4.58
71 72 2.409870 CCAAAGCCACCAGATCGCC 61.410 63.158 0.00 0.00 0.00 5.54
72 73 1.675310 CAAAGCCACCAGATCGCCA 60.675 57.895 0.00 0.00 0.00 5.69
73 74 1.377725 AAAGCCACCAGATCGCCAG 60.378 57.895 0.00 0.00 0.00 4.85
74 75 3.984193 AAGCCACCAGATCGCCAGC 62.984 63.158 0.00 0.00 0.00 4.85
78 79 4.827087 ACCAGATCGCCAGCGCAG 62.827 66.667 11.47 0.00 39.59 5.18
79 80 4.519437 CCAGATCGCCAGCGCAGA 62.519 66.667 11.47 3.45 39.59 4.26
80 81 2.279985 CAGATCGCCAGCGCAGAT 60.280 61.111 11.47 8.86 39.59 2.90
81 82 2.028778 AGATCGCCAGCGCAGATC 59.971 61.111 11.47 17.28 41.38 2.75
82 83 3.040763 GATCGCCAGCGCAGATCC 61.041 66.667 11.47 0.39 38.23 3.36
83 84 4.957684 ATCGCCAGCGCAGATCCG 62.958 66.667 11.47 5.64 39.59 4.18
91 92 3.490759 CGCAGATCCGCACCACAC 61.491 66.667 1.15 0.00 0.00 3.82
92 93 3.127533 GCAGATCCGCACCACACC 61.128 66.667 0.00 0.00 0.00 4.16
93 94 2.347114 CAGATCCGCACCACACCA 59.653 61.111 0.00 0.00 0.00 4.17
94 95 1.078214 CAGATCCGCACCACACCAT 60.078 57.895 0.00 0.00 0.00 3.55
95 96 0.177836 CAGATCCGCACCACACCATA 59.822 55.000 0.00 0.00 0.00 2.74
96 97 1.131638 AGATCCGCACCACACCATAT 58.868 50.000 0.00 0.00 0.00 1.78
97 98 1.070758 AGATCCGCACCACACCATATC 59.929 52.381 0.00 0.00 0.00 1.63
98 99 0.249868 ATCCGCACCACACCATATCG 60.250 55.000 0.00 0.00 0.00 2.92
99 100 2.534019 CCGCACCACACCATATCGC 61.534 63.158 0.00 0.00 0.00 4.58
100 101 1.521457 CGCACCACACCATATCGCT 60.521 57.895 0.00 0.00 0.00 4.93
101 102 1.765161 CGCACCACACCATATCGCTG 61.765 60.000 0.00 0.00 0.00 5.18
102 103 0.744414 GCACCACACCATATCGCTGT 60.744 55.000 0.00 0.00 0.00 4.40
103 104 1.290203 CACCACACCATATCGCTGTC 58.710 55.000 0.00 0.00 0.00 3.51
104 105 0.179111 ACCACACCATATCGCTGTCG 60.179 55.000 0.00 0.00 0.00 4.35
105 106 0.875908 CCACACCATATCGCTGTCGG 60.876 60.000 0.00 0.00 36.13 4.79
106 107 0.102300 CACACCATATCGCTGTCGGA 59.898 55.000 0.00 0.00 36.13 4.55
107 108 0.821517 ACACCATATCGCTGTCGGAA 59.178 50.000 0.00 0.00 36.13 4.30
108 109 1.202417 ACACCATATCGCTGTCGGAAG 60.202 52.381 0.00 0.00 36.13 3.46
109 110 0.249489 ACCATATCGCTGTCGGAAGC 60.249 55.000 0.66 0.66 39.94 3.86
110 111 0.946221 CCATATCGCTGTCGGAAGCC 60.946 60.000 4.91 0.00 40.23 4.35
111 112 0.946221 CATATCGCTGTCGGAAGCCC 60.946 60.000 4.91 0.00 40.23 5.19
129 130 4.704833 GAGCTTCACCTGCCGCCA 62.705 66.667 0.00 0.00 0.00 5.69
132 133 4.335647 CTTCACCTGCCGCCACCT 62.336 66.667 0.00 0.00 0.00 4.00
133 134 3.850098 CTTCACCTGCCGCCACCTT 62.850 63.158 0.00 0.00 0.00 3.50
134 135 3.842925 TTCACCTGCCGCCACCTTC 62.843 63.158 0.00 0.00 0.00 3.46
137 138 4.659172 CCTGCCGCCACCTTCCAA 62.659 66.667 0.00 0.00 0.00 3.53
138 139 3.058160 CTGCCGCCACCTTCCAAG 61.058 66.667 0.00 0.00 0.00 3.61
147 148 3.373565 CCTTCCAAGGTTGCCGCC 61.374 66.667 0.00 0.00 41.41 6.13
148 149 3.373565 CTTCCAAGGTTGCCGCCC 61.374 66.667 0.00 0.00 0.00 6.13
149 150 4.986708 TTCCAAGGTTGCCGCCCC 62.987 66.667 0.00 0.00 0.00 5.80
164 165 3.866582 CCCGGATCCAGGCCAGAC 61.867 72.222 13.41 0.00 0.00 3.51
165 166 4.227134 CCGGATCCAGGCCAGACG 62.227 72.222 13.41 2.05 0.00 4.18
166 167 3.461773 CGGATCCAGGCCAGACGT 61.462 66.667 13.41 0.00 0.00 4.34
167 168 2.501610 GGATCCAGGCCAGACGTC 59.498 66.667 7.70 7.70 0.00 4.34
168 169 2.105128 GATCCAGGCCAGACGTCG 59.895 66.667 10.46 5.16 0.00 5.12
169 170 4.148825 ATCCAGGCCAGACGTCGC 62.149 66.667 10.46 8.46 0.00 5.19
198 199 3.818787 GCAGCCATGGCCTTCGTG 61.819 66.667 33.14 24.05 43.17 4.35
199 200 2.046023 CAGCCATGGCCTTCGTGA 60.046 61.111 33.14 0.00 43.17 4.35
200 201 2.045926 AGCCATGGCCTTCGTGAC 60.046 61.111 33.14 2.26 43.17 3.67
201 202 2.045926 GCCATGGCCTTCGTGACT 60.046 61.111 27.24 0.00 34.35 3.41
202 203 2.401766 GCCATGGCCTTCGTGACTG 61.402 63.158 27.24 0.00 34.35 3.51
203 204 2.401766 CCATGGCCTTCGTGACTGC 61.402 63.158 3.32 0.00 34.35 4.40
204 205 2.434884 ATGGCCTTCGTGACTGCG 60.435 61.111 3.32 0.00 0.00 5.18
235 236 4.320456 CAGTCAGCACCACCCGCT 62.320 66.667 0.00 0.00 41.47 5.52
236 237 4.008933 AGTCAGCACCACCCGCTC 62.009 66.667 0.00 0.00 37.72 5.03
237 238 4.008933 GTCAGCACCACCCGCTCT 62.009 66.667 0.00 0.00 37.72 4.09
238 239 3.241530 TCAGCACCACCCGCTCTT 61.242 61.111 0.00 0.00 37.72 2.85
239 240 2.743928 CAGCACCACCCGCTCTTC 60.744 66.667 0.00 0.00 37.72 2.87
240 241 4.021925 AGCACCACCCGCTCTTCC 62.022 66.667 0.00 0.00 33.35 3.46
241 242 4.329545 GCACCACCCGCTCTTCCA 62.330 66.667 0.00 0.00 0.00 3.53
242 243 2.358737 CACCACCCGCTCTTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
243 244 4.003788 ACCACCCGCTCTTCCACG 62.004 66.667 0.00 0.00 0.00 4.94
244 245 4.003788 CCACCCGCTCTTCCACGT 62.004 66.667 0.00 0.00 0.00 4.49
245 246 2.432628 CACCCGCTCTTCCACGTC 60.433 66.667 0.00 0.00 0.00 4.34
246 247 4.052229 ACCCGCTCTTCCACGTCG 62.052 66.667 0.00 0.00 0.00 5.12
250 251 4.070552 GCTCTTCCACGTCGCCCT 62.071 66.667 0.00 0.00 0.00 5.19
251 252 2.125912 CTCTTCCACGTCGCCCTG 60.126 66.667 0.00 0.00 0.00 4.45
252 253 4.373116 TCTTCCACGTCGCCCTGC 62.373 66.667 0.00 0.00 0.00 4.85
253 254 4.680237 CTTCCACGTCGCCCTGCA 62.680 66.667 0.00 0.00 0.00 4.41
254 255 4.680237 TTCCACGTCGCCCTGCAG 62.680 66.667 6.78 6.78 0.00 4.41
286 287 2.360350 CACTGCCGCAACCCAGAT 60.360 61.111 0.00 0.00 33.40 2.90
287 288 1.973281 CACTGCCGCAACCCAGATT 60.973 57.895 0.00 0.00 33.40 2.40
288 289 1.675641 ACTGCCGCAACCCAGATTC 60.676 57.895 0.00 0.00 33.40 2.52
289 290 2.745884 TGCCGCAACCCAGATTCG 60.746 61.111 0.00 0.00 0.00 3.34
290 291 2.746277 GCCGCAACCCAGATTCGT 60.746 61.111 0.00 0.00 0.00 3.85
291 292 3.039202 GCCGCAACCCAGATTCGTG 62.039 63.158 0.00 0.00 0.00 4.35
292 293 1.375396 CCGCAACCCAGATTCGTGA 60.375 57.895 0.00 0.00 0.00 4.35
293 294 1.361668 CCGCAACCCAGATTCGTGAG 61.362 60.000 0.00 0.00 0.00 3.51
294 295 0.389817 CGCAACCCAGATTCGTGAGA 60.390 55.000 0.00 0.00 39.20 3.27
303 304 4.735132 TTCGTGAGAAGCGCCCCG 62.735 66.667 2.29 0.00 46.92 5.73
324 325 4.003788 CCGTTGGGTGACGAGCCT 62.004 66.667 0.00 0.00 45.47 4.58
325 326 2.432628 CGTTGGGTGACGAGCCTC 60.433 66.667 0.00 0.00 45.47 4.70
326 327 2.741092 GTTGGGTGACGAGCCTCA 59.259 61.111 0.00 0.00 40.76 3.86
327 328 1.668151 GTTGGGTGACGAGCCTCAC 60.668 63.158 0.00 0.00 40.76 3.51
331 332 3.366629 GTGACGAGCCTCACCTGA 58.633 61.111 0.00 0.00 35.44 3.86
332 333 1.893786 GTGACGAGCCTCACCTGAT 59.106 57.895 0.00 0.00 35.44 2.90
333 334 0.179124 GTGACGAGCCTCACCTGATC 60.179 60.000 0.00 0.00 35.44 2.92
334 335 1.323271 TGACGAGCCTCACCTGATCC 61.323 60.000 0.00 0.00 0.00 3.36
335 336 1.000993 ACGAGCCTCACCTGATCCT 59.999 57.895 0.00 0.00 0.00 3.24
336 337 1.326213 ACGAGCCTCACCTGATCCTG 61.326 60.000 0.00 0.00 0.00 3.86
337 338 1.828768 GAGCCTCACCTGATCCTGG 59.171 63.158 0.00 0.00 0.00 4.45
338 339 2.191641 GCCTCACCTGATCCTGGC 59.808 66.667 2.18 0.00 0.00 4.85
339 340 2.503061 CCTCACCTGATCCTGGCG 59.497 66.667 2.18 0.00 0.00 5.69
340 341 2.362369 CCTCACCTGATCCTGGCGT 61.362 63.158 2.18 0.00 0.00 5.68
341 342 1.153489 CTCACCTGATCCTGGCGTG 60.153 63.158 2.18 0.00 0.00 5.34
342 343 2.124983 CACCTGATCCTGGCGTGG 60.125 66.667 2.18 0.00 0.00 4.94
343 344 3.402681 ACCTGATCCTGGCGTGGG 61.403 66.667 2.18 0.00 0.00 4.61
344 345 3.083349 CCTGATCCTGGCGTGGGA 61.083 66.667 0.00 0.00 37.26 4.37
345 346 2.503061 CTGATCCTGGCGTGGGAG 59.497 66.667 0.00 0.00 36.21 4.30
346 347 3.083349 TGATCCTGGCGTGGGAGG 61.083 66.667 0.00 0.00 36.21 4.30
347 348 2.764128 GATCCTGGCGTGGGAGGA 60.764 66.667 0.00 0.00 42.67 3.71
348 349 2.285368 ATCCTGGCGTGGGAGGAA 60.285 61.111 0.00 0.00 41.78 3.36
349 350 2.317149 GATCCTGGCGTGGGAGGAAG 62.317 65.000 0.00 0.00 41.78 3.46
350 351 2.822643 ATCCTGGCGTGGGAGGAAGA 62.823 60.000 0.00 0.00 41.78 2.87
351 352 2.581354 CTGGCGTGGGAGGAAGAG 59.419 66.667 0.00 0.00 0.00 2.85
352 353 3.003173 TGGCGTGGGAGGAAGAGG 61.003 66.667 0.00 0.00 0.00 3.69
353 354 2.683933 GGCGTGGGAGGAAGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
354 355 2.579738 GCGTGGGAGGAAGAGGAC 59.420 66.667 0.00 0.00 0.00 3.85
355 356 3.020237 GCGTGGGAGGAAGAGGACC 62.020 68.421 0.00 0.00 0.00 4.46
356 357 1.305381 CGTGGGAGGAAGAGGACCT 60.305 63.158 0.00 0.00 40.80 3.85
360 361 3.212275 GAGGAAGAGGACCTCCGC 58.788 66.667 18.32 10.06 45.64 5.54
361 362 2.364448 AGGAAGAGGACCTCCGCC 60.364 66.667 18.32 18.34 42.08 6.13
362 363 2.683933 GGAAGAGGACCTCCGCCA 60.684 66.667 18.32 0.00 42.08 5.69
363 364 2.579738 GAAGAGGACCTCCGCCAC 59.420 66.667 18.32 1.97 42.08 5.01
364 365 3.003763 AAGAGGACCTCCGCCACC 61.004 66.667 18.32 0.00 42.08 4.61
369 370 4.309950 GACCTCCGCCACCGTTGT 62.310 66.667 0.00 0.00 0.00 3.32
370 371 4.309950 ACCTCCGCCACCGTTGTC 62.310 66.667 0.00 0.00 0.00 3.18
415 416 0.721718 CTTTTAAGCAGCGACGGAGG 59.278 55.000 0.00 0.00 0.00 4.30
416 417 0.672401 TTTTAAGCAGCGACGGAGGG 60.672 55.000 0.00 0.00 0.00 4.30
417 418 2.515996 TTTAAGCAGCGACGGAGGGG 62.516 60.000 0.00 0.00 0.00 4.79
418 419 3.949885 TAAGCAGCGACGGAGGGGA 62.950 63.158 0.00 0.00 0.00 4.81
424 425 3.141488 CGACGGAGGGGAGGACAG 61.141 72.222 0.00 0.00 0.00 3.51
425 426 2.760385 GACGGAGGGGAGGACAGG 60.760 72.222 0.00 0.00 0.00 4.00
426 427 4.400251 ACGGAGGGGAGGACAGGG 62.400 72.222 0.00 0.00 0.00 4.45
427 428 4.075793 CGGAGGGGAGGACAGGGA 62.076 72.222 0.00 0.00 0.00 4.20
428 429 2.706071 GGAGGGGAGGACAGGGAT 59.294 66.667 0.00 0.00 0.00 3.85
429 430 1.768077 GGAGGGGAGGACAGGGATG 60.768 68.421 0.00 0.00 0.00 3.51
430 431 1.768077 GAGGGGAGGACAGGGATGG 60.768 68.421 0.00 0.00 0.00 3.51
431 432 2.257541 GAGGGGAGGACAGGGATGGA 62.258 65.000 0.00 0.00 0.00 3.41
432 433 1.768077 GGGGAGGACAGGGATGGAG 60.768 68.421 0.00 0.00 0.00 3.86
433 434 1.768077 GGGAGGACAGGGATGGAGG 60.768 68.421 0.00 0.00 0.00 4.30
434 435 2.447714 GGAGGACAGGGATGGAGGC 61.448 68.421 0.00 0.00 0.00 4.70
435 436 1.690633 GAGGACAGGGATGGAGGCA 60.691 63.158 0.00 0.00 0.00 4.75
436 437 1.692042 AGGACAGGGATGGAGGCAG 60.692 63.158 0.00 0.00 0.00 4.85
437 438 2.191641 GACAGGGATGGAGGCAGC 59.808 66.667 0.00 0.00 0.00 5.25
438 439 3.412624 GACAGGGATGGAGGCAGCC 62.413 68.421 1.84 1.84 0.00 4.85
454 455 2.108362 CCCGGCGGCTAGGTTTAG 59.892 66.667 23.20 0.00 0.00 1.85
455 456 2.108362 CCGGCGGCTAGGTTTAGG 59.892 66.667 15.42 0.00 0.00 2.69
456 457 2.108362 CGGCGGCTAGGTTTAGGG 59.892 66.667 7.61 0.00 0.00 3.53
457 458 2.728435 CGGCGGCTAGGTTTAGGGT 61.728 63.158 7.61 0.00 0.00 4.34
458 459 1.605992 GGCGGCTAGGTTTAGGGTT 59.394 57.895 0.00 0.00 0.00 4.11
459 460 0.034767 GGCGGCTAGGTTTAGGGTTT 60.035 55.000 0.00 0.00 0.00 3.27
460 461 1.376543 GCGGCTAGGTTTAGGGTTTC 58.623 55.000 0.00 0.00 0.00 2.78
461 462 2.015588 GCGGCTAGGTTTAGGGTTTCC 61.016 57.143 0.00 0.00 0.00 3.13
462 463 1.279846 CGGCTAGGTTTAGGGTTTCCA 59.720 52.381 0.00 0.00 34.83 3.53
463 464 2.719739 GGCTAGGTTTAGGGTTTCCAC 58.280 52.381 0.00 0.00 34.83 4.02
464 465 2.619849 GGCTAGGTTTAGGGTTTCCACC 60.620 54.545 0.00 0.00 43.37 4.61
472 473 2.741211 GGTTTCCACCCGAGTCGC 60.741 66.667 7.12 0.00 37.03 5.19
473 474 2.741211 GTTTCCACCCGAGTCGCC 60.741 66.667 7.12 0.00 0.00 5.54
474 475 4.011517 TTTCCACCCGAGTCGCCC 62.012 66.667 7.12 0.00 0.00 6.13
501 502 2.684735 GGGAGAGACGAGGGAGGT 59.315 66.667 0.00 0.00 0.00 3.85
540 541 0.681243 GGTGCTGGTTGGATCCTTCC 60.681 60.000 14.23 15.09 42.94 3.46
603 604 3.056952 GCAAATGTGCGGATTAGACAG 57.943 47.619 0.00 0.00 41.93 3.51
604 605 2.677836 GCAAATGTGCGGATTAGACAGA 59.322 45.455 0.00 0.00 41.93 3.41
605 606 3.313526 GCAAATGTGCGGATTAGACAGAT 59.686 43.478 0.00 0.00 41.93 2.90
636 644 5.348997 CGTCAACTCTAGGAGGTTTGAATTC 59.651 44.000 0.00 0.00 30.38 2.17
723 740 1.375140 CACGCAGACAGACAGGCAT 60.375 57.895 0.00 0.00 0.00 4.40
724 741 1.375140 ACGCAGACAGACAGGCATG 60.375 57.895 0.00 0.00 0.00 4.06
725 742 2.747822 CGCAGACAGACAGGCATGC 61.748 63.158 9.90 9.90 0.00 4.06
726 743 1.673337 GCAGACAGACAGGCATGCA 60.673 57.895 21.36 0.00 31.98 3.96
727 744 1.645704 GCAGACAGACAGGCATGCAG 61.646 60.000 21.36 13.91 31.98 4.41
728 745 1.025113 CAGACAGACAGGCATGCAGG 61.025 60.000 21.36 13.16 0.00 4.85
729 746 1.002868 GACAGACAGGCATGCAGGT 60.003 57.895 21.36 16.59 0.00 4.00
730 747 0.250234 GACAGACAGGCATGCAGGTA 59.750 55.000 21.36 0.00 0.00 3.08
777 1658 3.195698 GCCCTCGCTTTACGCAGG 61.196 66.667 0.00 0.00 43.23 4.85
864 1780 3.805307 ACCTCGCGCTCAGTCTCG 61.805 66.667 5.56 0.00 0.00 4.04
874 1790 1.102154 CTCAGTCTCGGCAGATCACT 58.898 55.000 0.00 0.00 0.00 3.41
963 1888 2.758770 TTCTCACCTGCACGCGTACC 62.759 60.000 13.44 6.81 0.00 3.34
970 1895 2.214181 CTGCACGCGTACCCTCTCTT 62.214 60.000 13.44 0.00 0.00 2.85
975 1900 1.201880 ACGCGTACCCTCTCTTTTCTC 59.798 52.381 11.67 0.00 0.00 2.87
997 1923 2.403252 GGCAGCAGTTAAGCCTAGAA 57.597 50.000 0.00 0.00 44.92 2.10
1119 2059 2.109387 AACAAGCGCACCGGTACA 59.891 55.556 6.87 0.00 36.27 2.90
1157 2126 3.414269 TCTCACTCATGGTGTACGTACA 58.586 45.455 24.10 24.10 45.50 2.90
1158 2127 3.439129 TCTCACTCATGGTGTACGTACAG 59.561 47.826 28.02 17.22 45.50 2.74
1160 2129 4.014406 TCACTCATGGTGTACGTACAGAT 58.986 43.478 28.02 19.21 45.50 2.90
1161 2130 5.187687 TCACTCATGGTGTACGTACAGATA 58.812 41.667 28.02 17.05 45.50 1.98
1392 2422 3.506096 CTCGCCGACTGCTACCGA 61.506 66.667 0.00 0.00 38.05 4.69
1483 2513 1.306141 AAGGTCCAGATCTGCGGGA 60.306 57.895 17.76 6.69 38.62 5.14
1635 2665 3.470709 CGTGCCCTACATGATCATCTTT 58.529 45.455 4.86 0.00 37.49 2.52
1818 2997 3.372206 CACGAAAGCAAACCCTAGATCAG 59.628 47.826 0.00 0.00 0.00 2.90
2002 3185 2.988636 TCCTCATCGAGATCCAGGAT 57.011 50.000 0.00 0.00 0.00 3.24
2005 3188 2.421775 CCTCATCGAGATCCAGGATACG 59.578 54.545 17.55 17.55 46.39 3.06
2308 3491 3.218470 TCCACGTTCGTCACCGGT 61.218 61.111 0.00 0.00 33.95 5.28
2552 3738 2.588314 GCCTCCAGATGCTCAGCG 60.588 66.667 0.00 0.00 0.00 5.18
2667 3853 0.596600 ACGTTTGACGATCGTGCACT 60.597 50.000 28.12 0.00 46.05 4.40
2700 3896 4.848357 ACATCAAGGTGTAGGATTCAAGG 58.152 43.478 0.00 0.00 0.00 3.61
2715 3911 3.715628 TCAAGGCAAAGAAGTTCTTGC 57.284 42.857 18.70 20.62 36.71 4.01
2744 3941 9.611284 TTCAAACAATTCAAAGAAGATACATCG 57.389 29.630 0.00 0.00 0.00 3.84
2771 3968 7.103641 GGATGGAGTTGTACTACTTCATGAAA 58.896 38.462 28.82 5.72 43.00 2.69
2969 4178 1.073177 ACCTATAAACGCACGCACAC 58.927 50.000 0.00 0.00 0.00 3.82
2974 4183 0.037139 TAAACGCACGCACACCCTAT 60.037 50.000 0.00 0.00 0.00 2.57
2979 4188 1.153369 CACGCACACCCTATCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
3002 4211 0.971447 GCACCTCCGAGGGACTAAGT 60.971 60.000 18.99 0.00 41.55 2.24
3017 4226 4.873827 GGACTAAGTCGGCACATCATTTTA 59.126 41.667 0.00 0.00 32.65 1.52
3026 4235 5.414144 TCGGCACATCATTTTAAGATTGACA 59.586 36.000 0.00 0.00 0.00 3.58
3038 4247 2.571212 AGATTGACAAAGTCGCCACAA 58.429 42.857 0.00 0.00 34.95 3.33
3041 4250 1.454201 TGACAAAGTCGCCACAAACA 58.546 45.000 0.00 0.00 34.95 2.83
3044 4253 0.248866 CAAAGTCGCCACAAACACCC 60.249 55.000 0.00 0.00 0.00 4.61
3046 4255 0.467290 AAGTCGCCACAAACACCCAT 60.467 50.000 0.00 0.00 0.00 4.00
3047 4256 0.398696 AGTCGCCACAAACACCCATA 59.601 50.000 0.00 0.00 0.00 2.74
3063 4272 4.019681 CACCCATAACTTGAACCCTAGTGA 60.020 45.833 0.00 0.00 0.00 3.41
3106 4315 3.443681 CCTAACCATCCAACCACATGTTC 59.556 47.826 0.00 0.00 34.00 3.18
3147 4357 9.823647 GATTTCTTGATAGAGACATTAACTGGA 57.176 33.333 0.00 0.00 0.00 3.86
3187 4397 5.294552 CCTCTAGCAAAGTAGTTGTAATGGC 59.705 44.000 0.00 0.00 39.63 4.40
3211 4421 0.815615 GCATCTCCAACGATGACCCC 60.816 60.000 5.07 0.00 42.63 4.95
3212 4422 0.179045 CATCTCCAACGATGACCCCC 60.179 60.000 0.00 0.00 42.63 5.40
3236 4446 1.515954 CTAACCGGACACCGCATCT 59.484 57.895 9.46 0.00 46.86 2.90
3237 4447 0.742505 CTAACCGGACACCGCATCTA 59.257 55.000 9.46 0.00 46.86 1.98
3242 4452 1.270305 CCGGACACCGCATCTATCAAT 60.270 52.381 0.00 0.00 46.86 2.57
3252 4462 1.000843 CATCTATCAATGGACCGGCGA 59.999 52.381 9.30 0.00 0.00 5.54
3270 4480 3.083997 GGGCCAGTCCGAGGACAT 61.084 66.667 22.66 6.71 46.76 3.06
3284 4494 0.036765 GGACATTGGTACGTGAGCCA 60.037 55.000 0.00 0.63 0.00 4.75
3312 4522 7.510343 CCATCCAAAATTATCCCCTAAATGTCT 59.490 37.037 0.00 0.00 0.00 3.41
3334 4544 8.682710 TGTCTATTAGTATGGGCAATTTGAAAC 58.317 33.333 0.00 0.00 0.00 2.78
3357 4567 2.677836 CAAATCCGTCCGATCACAACAT 59.322 45.455 0.00 0.00 0.00 2.71
3359 4569 0.606096 TCCGTCCGATCACAACATGT 59.394 50.000 0.00 0.00 0.00 3.21
3409 4619 1.485124 CAAAAAGGGGCCACTATCCC 58.515 55.000 8.71 0.00 43.46 3.85
3445 4655 7.031226 TGCCTGATCACAAAAGAATATAAGC 57.969 36.000 0.00 0.00 0.00 3.09
3520 4730 3.106054 AGACTCCATGCTCAATCTGTCT 58.894 45.455 0.00 0.00 0.00 3.41
3549 4759 2.038007 TCGGCTGCCTCCTTCTCT 59.962 61.111 17.92 0.00 0.00 3.10
3557 4767 0.326264 GCCTCCTTCTCTGCTTCCAA 59.674 55.000 0.00 0.00 0.00 3.53
3569 4779 4.160329 TCTGCTTCCAACTCTTCCTTCTA 58.840 43.478 0.00 0.00 0.00 2.10
3619 4829 1.203928 CACGATCATCCTTCTGTCGC 58.796 55.000 0.00 0.00 35.86 5.19
3623 4833 2.804572 CGATCATCCTTCTGTCGCCATT 60.805 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.917760 GTGCGGGATCCCTCTCGG 61.918 72.222 28.42 13.53 45.80 4.63
3 4 4.593864 GCGTGCGGGATCCCTCTC 62.594 72.222 28.42 19.87 0.00 3.20
5 6 4.162690 AAGCGTGCGGGATCCCTC 62.163 66.667 28.42 21.72 0.00 4.30
6 7 4.162690 GAAGCGTGCGGGATCCCT 62.163 66.667 28.42 7.78 0.00 4.20
7 8 4.162690 AGAAGCGTGCGGGATCCC 62.163 66.667 22.12 22.12 0.00 3.85
8 9 2.586357 GAGAAGCGTGCGGGATCC 60.586 66.667 1.92 1.92 0.00 3.36
9 10 2.167861 GTGAGAAGCGTGCGGGATC 61.168 63.158 0.00 0.00 0.00 3.36
10 11 2.125512 GTGAGAAGCGTGCGGGAT 60.126 61.111 0.00 0.00 0.00 3.85
11 12 4.373116 GGTGAGAAGCGTGCGGGA 62.373 66.667 0.00 0.00 0.00 5.14
12 13 3.883744 AAGGTGAGAAGCGTGCGGG 62.884 63.158 0.00 0.00 0.00 6.13
13 14 1.507141 AAAAGGTGAGAAGCGTGCGG 61.507 55.000 0.00 0.00 0.00 5.69
14 15 0.307760 AAAAAGGTGAGAAGCGTGCG 59.692 50.000 0.00 0.00 0.00 5.34
15 16 1.065551 ACAAAAAGGTGAGAAGCGTGC 59.934 47.619 0.00 0.00 0.00 5.34
16 17 3.420839 AACAAAAAGGTGAGAAGCGTG 57.579 42.857 0.00 0.00 0.00 5.34
17 18 3.442273 TGAAACAAAAAGGTGAGAAGCGT 59.558 39.130 0.00 0.00 0.00 5.07
18 19 4.027572 TGAAACAAAAAGGTGAGAAGCG 57.972 40.909 0.00 0.00 0.00 4.68
19 20 5.063438 GGTTTGAAACAAAAAGGTGAGAAGC 59.937 40.000 10.53 0.00 0.00 3.86
20 21 6.162777 TGGTTTGAAACAAAAAGGTGAGAAG 58.837 36.000 10.53 0.00 0.00 2.85
21 22 6.102897 TGGTTTGAAACAAAAAGGTGAGAA 57.897 33.333 10.53 0.00 0.00 2.87
22 23 5.730296 TGGTTTGAAACAAAAAGGTGAGA 57.270 34.783 10.53 0.00 0.00 3.27
23 24 6.037062 GGATTGGTTTGAAACAAAAAGGTGAG 59.963 38.462 10.53 0.00 0.00 3.51
24 25 5.877564 GGATTGGTTTGAAACAAAAAGGTGA 59.122 36.000 10.53 0.00 0.00 4.02
25 26 5.645497 TGGATTGGTTTGAAACAAAAAGGTG 59.355 36.000 10.53 0.00 0.00 4.00
26 27 5.810095 TGGATTGGTTTGAAACAAAAAGGT 58.190 33.333 10.53 0.00 0.00 3.50
27 28 6.112058 TCTGGATTGGTTTGAAACAAAAAGG 58.888 36.000 10.53 0.00 0.00 3.11
28 29 6.238184 GCTCTGGATTGGTTTGAAACAAAAAG 60.238 38.462 10.53 5.23 0.00 2.27
29 30 5.584251 GCTCTGGATTGGTTTGAAACAAAAA 59.416 36.000 10.53 1.81 0.00 1.94
30 31 5.115480 GCTCTGGATTGGTTTGAAACAAAA 58.885 37.500 10.53 4.28 0.00 2.44
31 32 4.442753 GGCTCTGGATTGGTTTGAAACAAA 60.443 41.667 10.53 5.27 0.00 2.83
32 33 3.069443 GGCTCTGGATTGGTTTGAAACAA 59.931 43.478 10.53 0.00 0.00 2.83
33 34 2.627699 GGCTCTGGATTGGTTTGAAACA 59.372 45.455 10.53 0.00 0.00 2.83
34 35 2.627699 TGGCTCTGGATTGGTTTGAAAC 59.372 45.455 0.00 0.00 0.00 2.78
35 36 2.956132 TGGCTCTGGATTGGTTTGAAA 58.044 42.857 0.00 0.00 0.00 2.69
36 37 2.673775 TGGCTCTGGATTGGTTTGAA 57.326 45.000 0.00 0.00 0.00 2.69
37 38 2.673775 TTGGCTCTGGATTGGTTTGA 57.326 45.000 0.00 0.00 0.00 2.69
38 39 2.611224 GCTTTGGCTCTGGATTGGTTTG 60.611 50.000 0.00 0.00 35.22 2.93
39 40 1.620323 GCTTTGGCTCTGGATTGGTTT 59.380 47.619 0.00 0.00 35.22 3.27
40 41 1.260544 GCTTTGGCTCTGGATTGGTT 58.739 50.000 0.00 0.00 35.22 3.67
41 42 0.613012 GGCTTTGGCTCTGGATTGGT 60.613 55.000 0.00 0.00 38.73 3.67
42 43 0.612732 TGGCTTTGGCTCTGGATTGG 60.613 55.000 0.00 0.00 38.73 3.16
43 44 0.529378 GTGGCTTTGGCTCTGGATTG 59.471 55.000 0.00 0.00 38.73 2.67
44 45 0.613012 GGTGGCTTTGGCTCTGGATT 60.613 55.000 0.00 0.00 38.73 3.01
45 46 1.000396 GGTGGCTTTGGCTCTGGAT 60.000 57.895 0.00 0.00 38.73 3.41
46 47 2.416107 CTGGTGGCTTTGGCTCTGGA 62.416 60.000 0.00 0.00 38.73 3.86
47 48 1.975407 CTGGTGGCTTTGGCTCTGG 60.975 63.158 0.00 0.00 38.73 3.86
48 49 0.323178 ATCTGGTGGCTTTGGCTCTG 60.323 55.000 0.00 0.00 38.73 3.35
49 50 0.034670 GATCTGGTGGCTTTGGCTCT 60.035 55.000 0.00 0.00 38.73 4.09
50 51 1.372087 CGATCTGGTGGCTTTGGCTC 61.372 60.000 0.00 0.00 38.73 4.70
51 52 1.377725 CGATCTGGTGGCTTTGGCT 60.378 57.895 0.00 0.00 38.73 4.75
52 53 3.056313 GCGATCTGGTGGCTTTGGC 62.056 63.158 0.00 0.00 37.82 4.52
53 54 2.409870 GGCGATCTGGTGGCTTTGG 61.410 63.158 0.00 0.00 0.00 3.28
54 55 1.651240 CTGGCGATCTGGTGGCTTTG 61.651 60.000 0.00 0.00 0.00 2.77
55 56 1.377725 CTGGCGATCTGGTGGCTTT 60.378 57.895 0.00 0.00 0.00 3.51
56 57 2.270205 CTGGCGATCTGGTGGCTT 59.730 61.111 0.00 0.00 0.00 4.35
57 58 4.479993 GCTGGCGATCTGGTGGCT 62.480 66.667 0.00 0.00 0.00 4.75
61 62 4.827087 CTGCGCTGGCGATCTGGT 62.827 66.667 19.31 0.00 44.10 4.00
62 63 3.804153 ATCTGCGCTGGCGATCTGG 62.804 63.158 19.31 3.47 44.10 3.86
63 64 2.279985 ATCTGCGCTGGCGATCTG 60.280 61.111 19.31 6.21 44.10 2.90
64 65 2.028778 GATCTGCGCTGGCGATCT 59.971 61.111 19.31 0.00 44.10 2.75
65 66 3.040763 GGATCTGCGCTGGCGATC 61.041 66.667 19.31 15.48 42.80 3.69
66 67 4.957684 CGGATCTGCGCTGGCGAT 62.958 66.667 19.31 7.99 44.10 4.58
74 75 3.490759 GTGTGGTGCGGATCTGCG 61.491 66.667 21.30 4.47 37.81 5.18
75 76 3.127533 GGTGTGGTGCGGATCTGC 61.128 66.667 20.08 20.08 0.00 4.26
76 77 0.177836 TATGGTGTGGTGCGGATCTG 59.822 55.000 0.00 0.00 0.00 2.90
77 78 1.070758 GATATGGTGTGGTGCGGATCT 59.929 52.381 0.00 0.00 0.00 2.75
78 79 1.512926 GATATGGTGTGGTGCGGATC 58.487 55.000 0.00 0.00 0.00 3.36
79 80 0.249868 CGATATGGTGTGGTGCGGAT 60.250 55.000 0.00 0.00 0.00 4.18
80 81 1.142965 CGATATGGTGTGGTGCGGA 59.857 57.895 0.00 0.00 0.00 5.54
81 82 2.534019 GCGATATGGTGTGGTGCGG 61.534 63.158 0.00 0.00 0.00 5.69
82 83 1.521457 AGCGATATGGTGTGGTGCG 60.521 57.895 0.00 0.00 0.00 5.34
83 84 2.016961 CAGCGATATGGTGTGGTGC 58.983 57.895 0.00 0.00 41.21 5.01
90 91 0.249489 GCTTCCGACAGCGATATGGT 60.249 55.000 0.00 0.00 40.82 3.55
91 92 0.946221 GGCTTCCGACAGCGATATGG 60.946 60.000 0.00 0.00 41.12 2.74
92 93 0.946221 GGGCTTCCGACAGCGATATG 60.946 60.000 0.00 0.00 41.12 1.78
93 94 1.367840 GGGCTTCCGACAGCGATAT 59.632 57.895 0.00 0.00 41.12 1.63
94 95 2.812499 GGGCTTCCGACAGCGATA 59.188 61.111 0.00 0.00 41.12 2.92
112 113 4.704833 TGGCGGCAGGTGAAGCTC 62.705 66.667 7.97 0.00 0.00 4.09
115 116 3.850098 AAGGTGGCGGCAGGTGAAG 62.850 63.158 13.91 0.00 0.00 3.02
116 117 3.842925 GAAGGTGGCGGCAGGTGAA 62.843 63.158 13.91 0.00 0.00 3.18
117 118 4.329545 GAAGGTGGCGGCAGGTGA 62.330 66.667 13.91 0.00 0.00 4.02
120 121 4.659172 TTGGAAGGTGGCGGCAGG 62.659 66.667 13.91 0.00 0.00 4.85
121 122 3.058160 CTTGGAAGGTGGCGGCAG 61.058 66.667 13.91 0.00 0.00 4.85
122 123 4.659172 CCTTGGAAGGTGGCGGCA 62.659 66.667 7.97 7.97 41.41 5.69
131 132 3.373565 GGGCGGCAACCTTGGAAG 61.374 66.667 12.47 0.00 0.00 3.46
132 133 4.986708 GGGGCGGCAACCTTGGAA 62.987 66.667 12.47 0.00 0.00 3.53
147 148 3.866582 GTCTGGCCTGGATCCGGG 61.867 72.222 32.64 32.64 45.07 5.73
148 149 4.227134 CGTCTGGCCTGGATCCGG 62.227 72.222 14.26 14.26 0.00 5.14
149 150 3.432051 GACGTCTGGCCTGGATCCG 62.432 68.421 8.70 9.54 0.00 4.18
150 151 2.501610 GACGTCTGGCCTGGATCC 59.498 66.667 8.70 4.20 0.00 3.36
151 152 2.105128 CGACGTCTGGCCTGGATC 59.895 66.667 14.70 4.46 0.00 3.36
152 153 4.148825 GCGACGTCTGGCCTGGAT 62.149 66.667 14.70 0.00 0.00 3.41
181 182 3.818787 CACGAAGGCCATGGCTGC 61.819 66.667 34.70 20.16 38.81 5.25
182 183 2.046023 TCACGAAGGCCATGGCTG 60.046 61.111 34.70 24.41 38.81 4.85
183 184 2.045926 GTCACGAAGGCCATGGCT 60.046 61.111 34.70 17.99 41.24 4.75
184 185 2.045926 AGTCACGAAGGCCATGGC 60.046 61.111 29.47 29.47 41.06 4.40
185 186 2.401766 GCAGTCACGAAGGCCATGG 61.402 63.158 7.63 7.63 0.00 3.66
186 187 2.743752 CGCAGTCACGAAGGCCATG 61.744 63.158 5.01 0.00 34.06 3.66
187 188 2.434884 CGCAGTCACGAAGGCCAT 60.435 61.111 5.01 0.00 34.06 4.40
191 192 4.717629 TCCGCGCAGTCACGAAGG 62.718 66.667 8.75 0.00 34.87 3.46
192 193 3.470567 GTCCGCGCAGTCACGAAG 61.471 66.667 8.75 0.00 34.06 3.79
213 214 2.740055 GTGGTGCTGACTGCTCGG 60.740 66.667 5.87 0.00 43.37 4.63
214 215 2.740055 GGTGGTGCTGACTGCTCG 60.740 66.667 5.87 0.00 43.37 5.03
215 216 2.359230 GGGTGGTGCTGACTGCTC 60.359 66.667 5.87 1.96 43.37 4.26
216 217 4.320456 CGGGTGGTGCTGACTGCT 62.320 66.667 5.87 0.00 43.37 4.24
218 219 4.320456 AGCGGGTGGTGCTGACTG 62.320 66.667 0.00 0.00 42.14 3.51
219 220 4.008933 GAGCGGGTGGTGCTGACT 62.009 66.667 0.00 0.00 44.18 3.41
220 221 3.537206 AAGAGCGGGTGGTGCTGAC 62.537 63.158 0.00 0.00 44.18 3.51
221 222 3.240134 GAAGAGCGGGTGGTGCTGA 62.240 63.158 0.00 0.00 44.18 4.26
222 223 2.743928 GAAGAGCGGGTGGTGCTG 60.744 66.667 0.00 0.00 44.18 4.41
224 225 4.329545 TGGAAGAGCGGGTGGTGC 62.330 66.667 0.00 0.00 0.00 5.01
225 226 2.358737 GTGGAAGAGCGGGTGGTG 60.359 66.667 0.00 0.00 0.00 4.17
226 227 4.003788 CGTGGAAGAGCGGGTGGT 62.004 66.667 0.00 0.00 0.00 4.16
227 228 3.934391 GACGTGGAAGAGCGGGTGG 62.934 68.421 0.00 0.00 0.00 4.61
228 229 2.432628 GACGTGGAAGAGCGGGTG 60.433 66.667 0.00 0.00 0.00 4.61
229 230 4.052229 CGACGTGGAAGAGCGGGT 62.052 66.667 0.00 0.00 0.00 5.28
233 234 4.070552 AGGGCGACGTGGAAGAGC 62.071 66.667 0.11 0.00 0.00 4.09
234 235 2.125912 CAGGGCGACGTGGAAGAG 60.126 66.667 2.13 0.00 42.41 2.85
235 236 4.373116 GCAGGGCGACGTGGAAGA 62.373 66.667 13.73 0.00 46.11 2.87
236 237 4.680237 TGCAGGGCGACGTGGAAG 62.680 66.667 13.73 0.00 43.74 3.46
237 238 4.680237 CTGCAGGGCGACGTGGAA 62.680 66.667 13.73 0.00 45.96 3.53
269 270 1.926511 GAATCTGGGTTGCGGCAGTG 61.927 60.000 1.67 0.00 0.00 3.66
270 271 1.675641 GAATCTGGGTTGCGGCAGT 60.676 57.895 1.67 0.00 0.00 4.40
271 272 2.753966 CGAATCTGGGTTGCGGCAG 61.754 63.158 1.67 0.00 0.00 4.85
272 273 2.745884 CGAATCTGGGTTGCGGCA 60.746 61.111 0.00 0.00 0.00 5.69
273 274 2.746277 ACGAATCTGGGTTGCGGC 60.746 61.111 0.00 0.00 0.00 6.53
274 275 1.361668 CTCACGAATCTGGGTTGCGG 61.362 60.000 0.00 0.00 0.00 5.69
275 276 0.389817 TCTCACGAATCTGGGTTGCG 60.390 55.000 0.00 0.00 0.00 4.85
276 277 1.734465 CTTCTCACGAATCTGGGTTGC 59.266 52.381 0.00 0.00 0.00 4.17
277 278 1.734465 GCTTCTCACGAATCTGGGTTG 59.266 52.381 0.00 0.00 0.00 3.77
278 279 1.673033 CGCTTCTCACGAATCTGGGTT 60.673 52.381 0.00 0.00 0.00 4.11
279 280 0.108615 CGCTTCTCACGAATCTGGGT 60.109 55.000 0.00 0.00 0.00 4.51
280 281 1.424493 GCGCTTCTCACGAATCTGGG 61.424 60.000 0.00 0.00 0.00 4.45
281 282 1.424493 GGCGCTTCTCACGAATCTGG 61.424 60.000 7.64 0.00 0.00 3.86
282 283 1.424493 GGGCGCTTCTCACGAATCTG 61.424 60.000 7.64 0.00 0.00 2.90
283 284 1.153549 GGGCGCTTCTCACGAATCT 60.154 57.895 7.64 0.00 0.00 2.40
284 285 2.174319 GGGGCGCTTCTCACGAATC 61.174 63.158 7.64 0.00 0.00 2.52
285 286 2.125106 GGGGCGCTTCTCACGAAT 60.125 61.111 7.64 0.00 0.00 3.34
286 287 4.735132 CGGGGCGCTTCTCACGAA 62.735 66.667 7.64 0.00 0.00 3.85
303 304 4.651008 TCGTCACCCAACGGCGTC 62.651 66.667 15.17 0.00 42.80 5.19
304 305 4.657824 CTCGTCACCCAACGGCGT 62.658 66.667 6.77 6.77 42.80 5.68
307 308 3.934391 GAGGCTCGTCACCCAACGG 62.934 68.421 0.00 0.00 42.80 4.44
308 309 2.432628 GAGGCTCGTCACCCAACG 60.433 66.667 0.00 0.00 43.92 4.10
309 310 1.668151 GTGAGGCTCGTCACCCAAC 60.668 63.158 10.42 0.00 40.96 3.77
310 311 2.741092 GTGAGGCTCGTCACCCAA 59.259 61.111 10.42 0.00 40.96 4.12
314 315 0.179124 GATCAGGTGAGGCTCGTCAC 60.179 60.000 10.42 12.71 45.30 3.67
315 316 1.323271 GGATCAGGTGAGGCTCGTCA 61.323 60.000 10.42 0.00 0.00 4.35
316 317 1.040339 AGGATCAGGTGAGGCTCGTC 61.040 60.000 10.42 5.51 0.00 4.20
317 318 1.000993 AGGATCAGGTGAGGCTCGT 59.999 57.895 10.42 0.00 0.00 4.18
318 319 1.440893 CAGGATCAGGTGAGGCTCG 59.559 63.158 10.42 0.00 0.00 5.03
319 320 1.828768 CCAGGATCAGGTGAGGCTC 59.171 63.158 7.79 7.79 0.00 4.70
320 321 2.373707 GCCAGGATCAGGTGAGGCT 61.374 63.158 5.46 0.00 39.02 4.58
321 322 2.191641 GCCAGGATCAGGTGAGGC 59.808 66.667 5.46 0.00 34.71 4.70
322 323 2.362369 ACGCCAGGATCAGGTGAGG 61.362 63.158 20.04 2.73 39.89 3.86
323 324 1.153489 CACGCCAGGATCAGGTGAG 60.153 63.158 20.04 10.87 39.89 3.51
324 325 2.659063 CCACGCCAGGATCAGGTGA 61.659 63.158 20.04 0.00 39.89 4.02
325 326 2.124983 CCACGCCAGGATCAGGTG 60.125 66.667 13.61 13.61 42.31 4.00
326 327 3.402681 CCCACGCCAGGATCAGGT 61.403 66.667 5.46 0.00 0.00 4.00
327 328 3.083349 TCCCACGCCAGGATCAGG 61.083 66.667 0.00 0.00 0.00 3.86
328 329 2.503061 CTCCCACGCCAGGATCAG 59.497 66.667 0.00 0.00 31.48 2.90
329 330 3.083349 CCTCCCACGCCAGGATCA 61.083 66.667 0.00 0.00 31.48 2.92
330 331 2.317149 CTTCCTCCCACGCCAGGATC 62.317 65.000 0.00 0.00 38.66 3.36
331 332 2.285368 TTCCTCCCACGCCAGGAT 60.285 61.111 0.00 0.00 38.66 3.24
332 333 3.003173 CTTCCTCCCACGCCAGGA 61.003 66.667 0.00 0.00 37.00 3.86
333 334 3.003173 TCTTCCTCCCACGCCAGG 61.003 66.667 0.00 0.00 0.00 4.45
334 335 2.581354 CTCTTCCTCCCACGCCAG 59.419 66.667 0.00 0.00 0.00 4.85
335 336 3.003173 CCTCTTCCTCCCACGCCA 61.003 66.667 0.00 0.00 0.00 5.69
336 337 2.683933 TCCTCTTCCTCCCACGCC 60.684 66.667 0.00 0.00 0.00 5.68
337 338 2.579738 GTCCTCTTCCTCCCACGC 59.420 66.667 0.00 0.00 0.00 5.34
338 339 1.305381 AGGTCCTCTTCCTCCCACG 60.305 63.158 0.00 0.00 0.00 4.94
339 340 2.597995 GAGGTCCTCTTCCTCCCAC 58.402 63.158 12.02 0.00 43.90 4.61
344 345 2.364448 GGCGGAGGTCCTCTTCCT 60.364 66.667 18.58 0.00 37.64 3.36
345 346 2.683933 TGGCGGAGGTCCTCTTCC 60.684 66.667 18.58 18.10 36.61 3.46
346 347 2.579738 GTGGCGGAGGTCCTCTTC 59.420 66.667 18.58 10.10 0.00 2.87
347 348 3.003763 GGTGGCGGAGGTCCTCTT 61.004 66.667 18.58 0.00 0.00 2.85
352 353 4.309950 ACAACGGTGGCGGAGGTC 62.310 66.667 4.97 0.00 0.00 3.85
353 354 4.309950 GACAACGGTGGCGGAGGT 62.310 66.667 4.97 0.00 0.00 3.85
396 397 0.721718 CCTCCGTCGCTGCTTAAAAG 59.278 55.000 0.00 0.00 0.00 2.27
397 398 0.672401 CCCTCCGTCGCTGCTTAAAA 60.672 55.000 0.00 0.00 0.00 1.52
398 399 1.079405 CCCTCCGTCGCTGCTTAAA 60.079 57.895 0.00 0.00 0.00 1.52
399 400 2.577059 CCCTCCGTCGCTGCTTAA 59.423 61.111 0.00 0.00 0.00 1.85
400 401 3.458163 CCCCTCCGTCGCTGCTTA 61.458 66.667 0.00 0.00 0.00 3.09
407 408 3.141488 CTGTCCTCCCCTCCGTCG 61.141 72.222 0.00 0.00 0.00 5.12
408 409 2.760385 CCTGTCCTCCCCTCCGTC 60.760 72.222 0.00 0.00 0.00 4.79
409 410 4.400251 CCCTGTCCTCCCCTCCGT 62.400 72.222 0.00 0.00 0.00 4.69
410 411 3.396822 ATCCCTGTCCTCCCCTCCG 62.397 68.421 0.00 0.00 0.00 4.63
411 412 1.768077 CATCCCTGTCCTCCCCTCC 60.768 68.421 0.00 0.00 0.00 4.30
412 413 1.768077 CCATCCCTGTCCTCCCCTC 60.768 68.421 0.00 0.00 0.00 4.30
413 414 2.263099 CTCCATCCCTGTCCTCCCCT 62.263 65.000 0.00 0.00 0.00 4.79
414 415 1.768077 CTCCATCCCTGTCCTCCCC 60.768 68.421 0.00 0.00 0.00 4.81
415 416 1.768077 CCTCCATCCCTGTCCTCCC 60.768 68.421 0.00 0.00 0.00 4.30
416 417 2.447714 GCCTCCATCCCTGTCCTCC 61.448 68.421 0.00 0.00 0.00 4.30
417 418 1.690633 TGCCTCCATCCCTGTCCTC 60.691 63.158 0.00 0.00 0.00 3.71
418 419 1.692042 CTGCCTCCATCCCTGTCCT 60.692 63.158 0.00 0.00 0.00 3.85
419 420 2.914289 CTGCCTCCATCCCTGTCC 59.086 66.667 0.00 0.00 0.00 4.02
420 421 2.191641 GCTGCCTCCATCCCTGTC 59.808 66.667 0.00 0.00 0.00 3.51
421 422 3.415087 GGCTGCCTCCATCCCTGT 61.415 66.667 12.43 0.00 0.00 4.00
422 423 4.201122 GGGCTGCCTCCATCCCTG 62.201 72.222 19.68 0.00 42.87 4.45
437 438 2.108362 CTAAACCTAGCCGCCGGG 59.892 66.667 4.77 0.00 0.00 5.73
438 439 2.108362 CCTAAACCTAGCCGCCGG 59.892 66.667 0.00 0.00 0.00 6.13
439 440 2.108362 CCCTAAACCTAGCCGCCG 59.892 66.667 0.00 0.00 0.00 6.46
440 441 0.034767 AAACCCTAAACCTAGCCGCC 60.035 55.000 0.00 0.00 0.00 6.13
441 442 1.376543 GAAACCCTAAACCTAGCCGC 58.623 55.000 0.00 0.00 0.00 6.53
442 443 1.279846 TGGAAACCCTAAACCTAGCCG 59.720 52.381 0.00 0.00 0.00 5.52
443 444 2.619849 GGTGGAAACCCTAAACCTAGCC 60.620 54.545 0.00 0.00 0.00 3.93
444 445 2.619849 GGGTGGAAACCCTAAACCTAGC 60.620 54.545 6.68 0.00 46.39 3.42
445 446 3.361281 GGGTGGAAACCCTAAACCTAG 57.639 52.381 6.68 0.00 46.39 3.02
454 455 2.047560 CGACTCGGGTGGAAACCC 60.048 66.667 0.00 3.69 46.43 4.11
455 456 2.741211 GCGACTCGGGTGGAAACC 60.741 66.667 0.00 0.00 0.00 3.27
456 457 2.741211 GGCGACTCGGGTGGAAAC 60.741 66.667 0.00 0.00 0.00 2.78
457 458 4.011517 GGGCGACTCGGGTGGAAA 62.012 66.667 0.00 0.00 0.00 3.13
481 482 4.124943 TCCCTCGTCTCTCCCCCG 62.125 72.222 0.00 0.00 0.00 5.73
482 483 2.123640 CTCCCTCGTCTCTCCCCC 60.124 72.222 0.00 0.00 0.00 5.40
483 484 2.123640 CCTCCCTCGTCTCTCCCC 60.124 72.222 0.00 0.00 0.00 4.81
484 485 1.755008 CACCTCCCTCGTCTCTCCC 60.755 68.421 0.00 0.00 0.00 4.30
485 486 1.755008 CCACCTCCCTCGTCTCTCC 60.755 68.421 0.00 0.00 0.00 3.71
486 487 2.419739 GCCACCTCCCTCGTCTCTC 61.420 68.421 0.00 0.00 0.00 3.20
487 488 2.363147 GCCACCTCCCTCGTCTCT 60.363 66.667 0.00 0.00 0.00 3.10
488 489 2.060980 ATGCCACCTCCCTCGTCTC 61.061 63.158 0.00 0.00 0.00 3.36
489 490 2.039624 ATGCCACCTCCCTCGTCT 59.960 61.111 0.00 0.00 0.00 4.18
490 491 2.187946 CATGCCACCTCCCTCGTC 59.812 66.667 0.00 0.00 0.00 4.20
572 573 1.550072 GCACATTTGCTATGGGTGGTT 59.450 47.619 0.00 0.00 46.17 3.67
593 594 5.289595 TGACGCATGTAATCTGTCTAATCC 58.710 41.667 0.00 0.00 30.88 3.01
599 600 4.177026 AGAGTTGACGCATGTAATCTGTC 58.823 43.478 0.00 0.00 0.00 3.51
601 602 4.742167 CCTAGAGTTGACGCATGTAATCTG 59.258 45.833 0.00 0.00 0.00 2.90
602 603 4.645136 TCCTAGAGTTGACGCATGTAATCT 59.355 41.667 0.00 0.00 0.00 2.40
603 604 4.933330 TCCTAGAGTTGACGCATGTAATC 58.067 43.478 0.00 0.00 0.00 1.75
604 605 4.202161 CCTCCTAGAGTTGACGCATGTAAT 60.202 45.833 0.00 0.00 0.00 1.89
605 606 3.130516 CCTCCTAGAGTTGACGCATGTAA 59.869 47.826 0.00 0.00 0.00 2.41
636 644 2.290122 CTGCTAGTGCTCCGACTGGG 62.290 65.000 0.00 0.00 40.48 4.45
678 686 4.840005 GCTGCTACCCGGTGGCTC 62.840 72.222 24.66 13.72 40.66 4.70
696 704 3.771491 GTCTGCGTGAGTGCTGCG 61.771 66.667 0.00 0.00 34.22 5.18
712 726 0.251354 CTACCTGCATGCCTGTCTGT 59.749 55.000 16.68 5.72 0.00 3.41
726 743 1.988406 GGCGTTCAGGGACCTACCT 60.988 63.158 0.00 0.00 43.08 3.08
727 744 2.582978 GGCGTTCAGGGACCTACC 59.417 66.667 0.00 0.00 38.08 3.18
728 745 2.183555 CGGCGTTCAGGGACCTAC 59.816 66.667 0.00 0.00 0.00 3.18
729 746 2.036098 TCGGCGTTCAGGGACCTA 59.964 61.111 6.85 0.00 0.00 3.08
730 747 3.692406 GTCGGCGTTCAGGGACCT 61.692 66.667 6.85 0.00 0.00 3.85
858 1742 1.102154 CAGAGTGATCTGCCGAGACT 58.898 55.000 0.00 0.00 0.00 3.24
874 1790 1.479730 AGAGATGCGATCTTGTGCAGA 59.520 47.619 0.00 0.00 45.52 4.26
963 1888 2.083002 GCTGCCAAGAGAAAAGAGAGG 58.917 52.381 0.00 0.00 0.00 3.69
970 1895 2.554032 GCTTAACTGCTGCCAAGAGAAA 59.446 45.455 0.00 0.00 0.00 2.52
997 1923 2.990479 GACCTTGTCCGCCATCCT 59.010 61.111 0.00 0.00 0.00 3.24
1119 2059 2.852449 TGAGATGAGGCAGGGGTTTTAT 59.148 45.455 0.00 0.00 0.00 1.40
1157 2126 6.757010 CCAACACAATTAAGTACGCTCTATCT 59.243 38.462 0.00 0.00 0.00 1.98
1158 2127 6.534079 ACCAACACAATTAAGTACGCTCTATC 59.466 38.462 0.00 0.00 0.00 2.08
1160 2129 5.786311 ACCAACACAATTAAGTACGCTCTA 58.214 37.500 0.00 0.00 0.00 2.43
1161 2130 4.638304 ACCAACACAATTAAGTACGCTCT 58.362 39.130 0.00 0.00 0.00 4.09
1392 2422 4.148825 GTGCTCTGGTCGCCGGAT 62.149 66.667 5.05 0.00 38.36 4.18
1796 2975 3.334691 TGATCTAGGGTTTGCTTTCGTG 58.665 45.455 0.00 0.00 0.00 4.35
1818 2997 4.314740 TTGGTTAACACATTGCTCAACC 57.685 40.909 8.10 0.00 36.73 3.77
2308 3491 4.361971 AGCGGGACCTCGACCTCA 62.362 66.667 6.56 0.00 0.00 3.86
2552 3738 2.663188 GATGGCGAGGCATCCGAC 60.663 66.667 23.79 4.65 35.21 4.79
2667 3853 6.429692 CCTACACCTTGATGTATTGTTTGTGA 59.570 38.462 0.00 0.00 34.59 3.58
2700 3896 2.362077 TGAAGGGCAAGAACTTCTTTGC 59.638 45.455 0.92 8.78 42.67 3.68
2715 3911 8.359642 TGTATCTTCTTTGAATTGTTTGAAGGG 58.640 33.333 0.00 0.00 33.77 3.95
2744 3941 5.401531 TGAAGTAGTACAACTCCATCCAC 57.598 43.478 2.52 0.00 0.00 4.02
2909 4116 8.502105 TATATATATATATGACCGTCTGCGGG 57.498 38.462 20.93 0.00 43.82 6.13
2943 4152 3.761657 CGTGCGTTTATAGGTGTGAGTA 58.238 45.455 0.00 0.00 0.00 2.59
2956 4165 1.296056 GATAGGGTGTGCGTGCGTTT 61.296 55.000 0.00 0.00 0.00 3.60
2969 4178 0.692419 AGGTGCTCACAGGGATAGGG 60.692 60.000 2.21 0.00 0.00 3.53
2974 4183 2.997315 CGGAGGTGCTCACAGGGA 60.997 66.667 2.21 0.00 31.08 4.20
2979 4188 2.680352 TCCCTCGGAGGTGCTCAC 60.680 66.667 22.07 0.00 31.93 3.51
3002 4211 5.414144 TGTCAATCTTAAAATGATGTGCCGA 59.586 36.000 0.00 0.00 0.00 5.54
3017 4226 2.571212 TGTGGCGACTTTGTCAATCTT 58.429 42.857 0.00 0.00 32.09 2.40
3026 4235 0.681564 TGGGTGTTTGTGGCGACTTT 60.682 50.000 0.00 0.00 0.00 2.66
3038 4247 3.895704 AGGGTTCAAGTTATGGGTGTT 57.104 42.857 0.00 0.00 0.00 3.32
3041 4250 4.172807 TCACTAGGGTTCAAGTTATGGGT 58.827 43.478 0.00 0.00 0.00 4.51
3044 4253 4.872691 CAGCTCACTAGGGTTCAAGTTATG 59.127 45.833 0.00 0.00 0.00 1.90
3046 4255 4.157246 TCAGCTCACTAGGGTTCAAGTTA 58.843 43.478 0.00 0.00 0.00 2.24
3047 4256 2.972713 TCAGCTCACTAGGGTTCAAGTT 59.027 45.455 0.00 0.00 0.00 2.66
3063 4272 1.007721 AGGACAGTGGTATCCTCAGCT 59.992 52.381 0.00 0.00 41.83 4.24
3106 4315 4.147219 AGAAATCCTTTTCTCGCAAACG 57.853 40.909 0.00 0.00 46.88 3.60
3127 4337 8.152898 CCATCATCCAGTTAATGTCTCTATCAA 58.847 37.037 0.00 0.00 0.00 2.57
3135 4345 6.769822 ACAATCTCCATCATCCAGTTAATGTC 59.230 38.462 0.00 0.00 0.00 3.06
3147 4357 5.604231 TGCTAGAGGTTACAATCTCCATCAT 59.396 40.000 0.00 0.00 36.82 2.45
3187 4397 0.816825 CATCGTTGGAGATGCCCTGG 60.817 60.000 0.00 0.00 41.09 4.45
3214 4424 3.777910 CGGTGTCCGGTTAGGGGG 61.778 72.222 0.00 0.00 44.15 5.40
3236 4446 1.745890 CCTCGCCGGTCCATTGATA 59.254 57.895 1.90 0.00 0.00 2.15
3237 4447 2.505982 CCTCGCCGGTCCATTGAT 59.494 61.111 1.90 0.00 0.00 2.57
3252 4462 3.625632 ATGTCCTCGGACTGGCCCT 62.626 63.158 16.41 0.00 44.80 5.19
3270 4480 0.398696 ATGGTTGGCTCACGTACCAA 59.601 50.000 9.54 10.66 43.35 3.67
3284 4494 7.627293 ACATTTAGGGGATAATTTTGGATGGTT 59.373 33.333 0.00 0.00 0.00 3.67
3312 4522 8.815565 TGAGTTTCAAATTGCCCATACTAATA 57.184 30.769 0.00 0.00 0.00 0.98
3334 4544 2.293677 TGTGATCGGACGGATTTGAG 57.706 50.000 0.00 0.00 34.82 3.02
3357 4567 0.458370 CTGATGTGATCCGTCGCACA 60.458 55.000 6.63 6.63 46.71 4.57
3409 4619 6.741992 TGTGATCAGGCATGTAAAAACTAG 57.258 37.500 0.00 0.00 0.00 2.57
3549 4759 3.904339 ACTAGAAGGAAGAGTTGGAAGCA 59.096 43.478 0.00 0.00 0.00 3.91
3557 4767 4.345257 TGTTGAAGCACTAGAAGGAAGAGT 59.655 41.667 0.00 0.00 0.00 3.24
3619 4829 6.005583 CATGACGATGGAGGATTTAAATGG 57.994 41.667 5.17 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.