Multiple sequence alignment - TraesCS3A01G406700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G406700 chr3A 100.000 9785 0 0 1 9785 651635957 651626173 0.000000e+00 18070.0
1 TraesCS3A01G406700 chr3A 96.552 116 4 0 8088 8203 233523140 233523255 1.000000e-44 193.0
2 TraesCS3A01G406700 chr3A 91.753 97 4 3 8869 8962 530193676 530193581 2.220000e-26 132.0
3 TraesCS3A01G406700 chr3A 90.722 97 5 3 8868 8961 714582443 714582538 1.030000e-24 126.0
4 TraesCS3A01G406700 chr2A 99.298 5127 35 1 2147 7273 58366732 58371857 0.000000e+00 9267.0
5 TraesCS3A01G406700 chr2A 98.753 5134 63 1 2145 7278 737422937 737417805 0.000000e+00 9125.0
6 TraesCS3A01G406700 chr2A 99.741 386 1 0 6888 7273 737422936 737422551 0.000000e+00 708.0
7 TraesCS3A01G406700 chr2A 98.718 390 4 1 2146 2535 58371472 58371860 0.000000e+00 691.0
8 TraesCS3A01G406700 chr2A 98.705 386 5 0 2146 2531 737418195 737417810 0.000000e+00 686.0
9 TraesCS3A01G406700 chr2A 99.074 108 1 0 8094 8201 238012889 238012996 2.790000e-45 195.0
10 TraesCS3A01G406700 chr2A 98.214 112 1 1 8095 8206 763687463 763687573 2.790000e-45 195.0
11 TraesCS3A01G406700 chr2A 97.938 97 2 0 254 350 227632604 227632700 1.690000e-37 169.0
12 TraesCS3A01G406700 chr2A 98.876 89 1 0 260 348 715989403 715989491 1.020000e-34 159.0
13 TraesCS3A01G406700 chr2A 92.381 105 6 2 248 350 589690407 589690511 2.200000e-31 148.0
14 TraesCS3A01G406700 chr2A 85.859 99 8 6 8961 9056 116436905 116436810 6.250000e-17 100.0
15 TraesCS3A01G406700 chr7B 99.083 5127 46 1 2147 7273 591707559 591712684 0.000000e+00 9206.0
16 TraesCS3A01G406700 chr7B 94.845 97 5 0 257 353 489323167 489323071 1.700000e-32 152.0
17 TraesCS3A01G406700 chr7B 88.298 94 6 5 8961 9050 570905411 570905319 3.740000e-19 108.0
18 TraesCS3A01G406700 chr7B 87.778 90 5 6 8961 9047 624782589 624782503 6.250000e-17 100.0
19 TraesCS3A01G406700 chr7B 95.238 63 2 1 8961 9022 55865083 55865145 2.250000e-16 99.0
20 TraesCS3A01G406700 chr1A 98.463 5139 77 2 2141 7278 27376701 27371564 0.000000e+00 9051.0
21 TraesCS3A01G406700 chr1A 94.958 119 6 0 8085 8203 82078244 82078362 4.670000e-43 187.0
22 TraesCS3A01G406700 chr1A 91.753 97 5 2 8868 8961 363424704 363424800 2.220000e-26 132.0
23 TraesCS3A01G406700 chr6B 98.382 5129 80 2 2147 7275 267790730 267795855 0.000000e+00 9009.0
24 TraesCS3A01G406700 chr6B 98.128 5127 95 1 2147 7273 716558998 716564123 0.000000e+00 8935.0
25 TraesCS3A01G406700 chr6B 89.320 103 6 4 8865 8964 313699556 313699456 3.710000e-24 124.0
26 TraesCS3A01G406700 chr5A 96.314 5128 149 19 2147 7273 592127105 592132193 0.000000e+00 8386.0
27 TraesCS3A01G406700 chr5A 95.002 4682 196 19 2147 6822 472735363 472730714 0.000000e+00 7315.0
28 TraesCS3A01G406700 chr5A 88.055 879 83 11 1230 2096 631468278 631467410 0.000000e+00 1022.0
29 TraesCS3A01G406700 chr5A 91.763 607 36 9 721 1318 631468875 631468274 0.000000e+00 832.0
30 TraesCS3A01G406700 chr5A 87.770 556 46 5 7341 7890 631467294 631466755 1.790000e-176 630.0
31 TraesCS3A01G406700 chr5A 90.123 324 20 9 721 1035 631469452 631469132 2.540000e-110 411.0
32 TraesCS3A01G406700 chr5A 81.360 456 76 9 8367 8816 631466191 631465739 7.220000e-96 363.0
33 TraesCS3A01G406700 chr5A 87.338 308 36 1 8224 8531 631466457 631466153 5.620000e-92 350.0
34 TraesCS3A01G406700 chr5A 96.795 156 5 0 7118 7273 548385242 548385397 2.710000e-65 261.0
35 TraesCS3A01G406700 chr5A 96.154 156 6 0 7118 7273 548380543 548380698 1.260000e-63 255.0
36 TraesCS3A01G406700 chr5A 94.904 157 8 0 7118 7274 66845659 66845503 7.590000e-61 246.0
37 TraesCS3A01G406700 chr5A 94.872 156 8 0 7118 7273 80930337 80930182 2.730000e-60 244.0
38 TraesCS3A01G406700 chr5A 96.522 115 4 0 8095 8209 383832235 383832121 3.610000e-44 191.0
39 TraesCS3A01G406700 chr5A 82.456 228 31 4 8356 8580 631466265 631466044 3.610000e-44 191.0
40 TraesCS3A01G406700 chr5A 95.041 121 4 2 8083 8202 493473758 493473877 1.300000e-43 189.0
41 TraesCS3A01G406700 chr5A 86.905 168 10 3 520 687 669809169 669809324 2.810000e-40 178.0
42 TraesCS3A01G406700 chr5A 96.809 94 2 1 254 347 635512472 635512564 1.320000e-33 156.0
43 TraesCS3A01G406700 chr5A 94.059 101 6 0 253 353 359042820 359042720 4.730000e-33 154.0
44 TraesCS3A01G406700 chr5A 91.837 49 4 0 2088 2136 631467403 631467355 1.760000e-07 69.4
45 TraesCS3A01G406700 chr2B 90.829 5136 432 22 2147 7273 369495014 369489909 0.000000e+00 6839.0
46 TraesCS3A01G406700 chr2B 91.818 110 6 2 262 368 129662032 129661923 6.120000e-32 150.0
47 TraesCS3A01G406700 chr2B 88.136 118 12 2 256 372 748284648 748284764 1.330000e-28 139.0
48 TraesCS3A01G406700 chr2B 93.407 91 3 2 8873 8961 307578415 307578504 2.220000e-26 132.0
49 TraesCS3A01G406700 chr2B 90.099 101 4 5 8867 8964 776551609 776551512 1.030000e-24 126.0
50 TraesCS3A01G406700 chr2B 90.000 100 6 3 8867 8964 776552239 776552142 1.030000e-24 126.0
51 TraesCS3A01G406700 chr3D 94.914 1809 64 9 345 2146 516421804 516423591 0.000000e+00 2806.0
52 TraesCS3A01G406700 chr3D 95.301 830 23 4 7274 8094 516423587 516424409 0.000000e+00 1303.0
53 TraesCS3A01G406700 chr3D 94.894 803 33 4 8969 9768 516425313 516426110 0.000000e+00 1249.0
54 TraesCS3A01G406700 chr3D 84.908 709 68 23 9080 9768 516665318 516666007 0.000000e+00 680.0
55 TraesCS3A01G406700 chr3D 97.398 269 7 0 1 269 516419485 516419753 8.960000e-125 459.0
56 TraesCS3A01G406700 chr3D 92.994 314 13 2 8524 8837 516424990 516425294 5.390000e-122 449.0
57 TraesCS3A01G406700 chr3D 93.651 126 5 3 8084 8209 479772178 479772300 1.680000e-42 185.0
58 TraesCS3A01G406700 chr5B 93.788 1481 55 18 687 2146 631796664 631795200 0.000000e+00 2191.0
59 TraesCS3A01G406700 chr5B 94.828 638 21 3 7466 8094 631794809 631794175 0.000000e+00 985.0
60 TraesCS3A01G406700 chr5B 93.857 293 18 0 8524 8816 631793533 631793241 9.020000e-120 442.0
61 TraesCS3A01G406700 chr5B 93.780 209 13 0 7274 7482 631795204 631794996 2.050000e-81 315.0
62 TraesCS3A01G406700 chr5B 86.574 216 26 2 8365 8580 631793842 631793630 1.640000e-57 235.0
63 TraesCS3A01G406700 chr5B 89.441 161 8 6 8870 9022 577021606 577021765 2.790000e-45 195.0
64 TraesCS3A01G406700 chr5B 88.435 147 12 4 8880 9023 605002536 605002392 1.310000e-38 172.0
65 TraesCS3A01G406700 chr5B 92.632 95 3 3 8869 8961 462745592 462745684 6.170000e-27 134.0
66 TraesCS3A01G406700 chr3B 92.871 1024 42 19 1127 2146 680753643 680754639 0.000000e+00 1458.0
67 TraesCS3A01G406700 chr3B 94.585 554 13 5 7550 8094 680754865 680755410 0.000000e+00 841.0
68 TraesCS3A01G406700 chr3B 92.205 449 24 6 9325 9768 680756539 680756981 8.340000e-175 625.0
69 TraesCS3A01G406700 chr3B 83.144 706 81 26 9083 9768 681008327 681007640 2.340000e-170 610.0
70 TraesCS3A01G406700 chr3B 94.444 324 16 2 8515 8837 680755989 680756311 1.900000e-136 497.0
71 TraesCS3A01G406700 chr3B 90.062 322 20 5 8219 8531 680755552 680755870 3.290000e-109 407.0
72 TraesCS3A01G406700 chr3B 96.121 232 9 0 7274 7505 680754635 680754866 7.170000e-101 379.0
73 TraesCS3A01G406700 chr3B 97.235 217 5 1 377 593 680751134 680751349 5.580000e-97 366.0
74 TraesCS3A01G406700 chr3B 94.536 183 4 2 945 1127 680751350 680751526 2.690000e-70 278.0
75 TraesCS3A01G406700 chr3B 81.152 191 16 9 8409 8580 680755814 680756003 1.710000e-27 135.0
76 TraesCS3A01G406700 chr5D 85.561 935 83 27 1230 2146 502878867 502877967 0.000000e+00 931.0
77 TraesCS3A01G406700 chr5D 90.824 643 36 15 701 1326 502879491 502878855 0.000000e+00 839.0
78 TraesCS3A01G406700 chr5D 87.097 558 45 14 7340 7890 502877914 502877377 3.020000e-169 606.0
79 TraesCS3A01G406700 chr5D 94.539 293 15 1 8524 8816 502876633 502876342 1.500000e-122 451.0
80 TraesCS3A01G406700 chr5D 87.926 323 24 8 8221 8531 502877086 502876767 5.580000e-97 366.0
81 TraesCS3A01G406700 chr5D 87.963 216 23 2 8365 8580 502876897 502876685 1.630000e-62 252.0
82 TraesCS3A01G406700 chr1D 92.636 258 15 3 1 255 348841058 348841314 1.550000e-97 368.0
83 TraesCS3A01G406700 chr1D 92.821 195 8 1 493 687 348898190 348898378 2.690000e-70 278.0
84 TraesCS3A01G406700 chr1D 92.547 161 10 1 345 503 348841303 348841463 7.640000e-56 230.0
85 TraesCS3A01G406700 chr7D 94.958 119 6 0 8085 8203 4020222 4020104 4.670000e-43 187.0
86 TraesCS3A01G406700 chr7D 89.899 99 7 2 8865 8961 14550691 14550788 3.710000e-24 124.0
87 TraesCS3A01G406700 chr2D 92.800 125 9 0 8086 8210 349931229 349931353 2.170000e-41 182.0
88 TraesCS3A01G406700 chr2D 90.722 97 5 3 8868 8961 459298692 459298787 1.030000e-24 126.0
89 TraesCS3A01G406700 chr4B 98.901 91 1 0 258 348 142696575 142696665 7.860000e-36 163.0
90 TraesCS3A01G406700 chr4B 85.227 88 12 1 7892 7978 58752678 58752765 1.350000e-13 89.8
91 TraesCS3A01G406700 chr6D 90.196 102 8 1 8865 8964 153186096 153185995 2.220000e-26 132.0
92 TraesCS3A01G406700 chr4A 91.667 96 4 3 8870 8961 37779540 37779635 7.980000e-26 130.0
93 TraesCS3A01G406700 chr4A 85.567 97 9 4 8961 9053 747446 747541 8.090000e-16 97.1
94 TraesCS3A01G406700 chr1B 90.816 98 5 3 8868 8961 230141378 230141475 2.870000e-25 128.0
95 TraesCS3A01G406700 chr7A 86.022 93 7 5 8961 9049 404121594 404121504 2.910000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G406700 chr3A 651626173 651635957 9784 True 18070.000000 18070 100.00000 1 9785 1 chr3A.!!$R2 9784
1 TraesCS3A01G406700 chr2A 737417805 737422937 5132 True 9125.000000 9125 98.75300 2145 7278 1 chr2A.!!$R2 5133
2 TraesCS3A01G406700 chr2A 58366732 58371860 5128 False 4979.000000 9267 99.00800 2146 7273 2 chr2A.!!$F6 5127
3 TraesCS3A01G406700 chr7B 591707559 591712684 5125 False 9206.000000 9206 99.08300 2147 7273 1 chr7B.!!$F2 5126
4 TraesCS3A01G406700 chr1A 27371564 27376701 5137 True 9051.000000 9051 98.46300 2141 7278 1 chr1A.!!$R1 5137
5 TraesCS3A01G406700 chr6B 267790730 267795855 5125 False 9009.000000 9009 98.38200 2147 7275 1 chr6B.!!$F1 5128
6 TraesCS3A01G406700 chr6B 716558998 716564123 5125 False 8935.000000 8935 98.12800 2147 7273 1 chr6B.!!$F2 5126
7 TraesCS3A01G406700 chr5A 592127105 592132193 5088 False 8386.000000 8386 96.31400 2147 7273 1 chr5A.!!$F4 5126
8 TraesCS3A01G406700 chr5A 472730714 472735363 4649 True 7315.000000 7315 95.00200 2147 6822 1 chr5A.!!$R5 4675
9 TraesCS3A01G406700 chr5A 631465739 631469452 3713 True 483.550000 1022 87.58775 721 8816 8 chr5A.!!$R6 8095
10 TraesCS3A01G406700 chr2B 369489909 369495014 5105 True 6839.000000 6839 90.82900 2147 7273 1 chr2B.!!$R2 5126
11 TraesCS3A01G406700 chr3D 516419485 516426110 6625 False 1253.200000 2806 95.10020 1 9768 5 chr3D.!!$F3 9767
12 TraesCS3A01G406700 chr3D 516665318 516666007 689 False 680.000000 680 84.90800 9080 9768 1 chr3D.!!$F2 688
13 TraesCS3A01G406700 chr5B 631793241 631796664 3423 True 833.600000 2191 92.56540 687 8816 5 chr5B.!!$R2 8129
14 TraesCS3A01G406700 chr3B 681007640 681008327 687 True 610.000000 610 83.14400 9083 9768 1 chr3B.!!$R1 685
15 TraesCS3A01G406700 chr3B 680751134 680756981 5847 False 554.000000 1458 92.57900 377 9768 9 chr3B.!!$F1 9391
16 TraesCS3A01G406700 chr5D 502876342 502879491 3149 True 574.166667 931 88.98500 701 8816 6 chr5D.!!$R1 8115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 2434 0.106419 TTGGGTGGCCGAGAACTTTT 60.106 50.000 0.00 0.00 0.00 2.27 F
1358 5558 2.237393 TGCCTCCAATTGTTTTGTGC 57.763 45.000 4.43 0.00 0.00 4.57 F
1480 5681 0.379316 GACGCCACAAACGAGGTTTT 59.621 50.000 0.00 0.00 33.10 2.43 F
1483 5684 0.741915 GCCACAAACGAGGTTTTGGA 59.258 50.000 9.99 0.00 40.25 3.53 F
4241 8497 1.557371 TGAGTTCCCGTTCATATGCCA 59.443 47.619 0.00 0.00 0.00 4.92 F
5350 9607 0.179084 GGATGGCGTCGAGGAAATCA 60.179 55.000 9.75 1.66 0.00 2.57 F
8122 12698 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 5658 0.319211 CCTCGTTTGTGGCGTCTGTA 60.319 55.000 0.00 0.0 0.00 2.74 R
2241 6483 2.777832 AATCTCTTCTCCTGCACCAC 57.222 50.000 0.00 0.0 0.00 4.16 R
4241 8497 1.524863 CCTCGTCACCGTTCTCTGGT 61.525 60.000 0.00 0.0 41.47 4.00 R
4344 8600 2.431771 CACGGCCGTTCATCGTCA 60.432 61.111 32.11 0.0 37.94 4.35 R
6560 10823 0.316204 GACTTCCCCAAGTTCGACGA 59.684 55.000 0.00 0.0 43.37 4.20 R
8183 12759 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.0 0.00 4.30 R
9589 14590 0.960364 TGCCGGCCATTCTTCTTGTC 60.960 55.000 26.77 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.843851 CCCCTTCCACATAGGCACTTA 59.156 52.381 0.00 0.00 41.75 2.24
224 225 2.176798 ACCAATGGAAACCTCTGTTCCA 59.823 45.455 6.16 8.25 36.65 3.53
269 270 2.093447 CCCTGTTGTCATGTACTCCCTC 60.093 54.545 0.00 0.00 0.00 4.30
270 271 2.093447 CCTGTTGTCATGTACTCCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
274 275 1.822990 TGTCATGTACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
277 278 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
278 279 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
279 280 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
284 285 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
285 286 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
287 288 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
288 289 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
289 290 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
290 291 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
291 292 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
292 293 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
293 294 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
296 297 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
337 338 8.970691 AAAGTTGAATCATCTATTTTGGAACG 57.029 30.769 0.00 0.00 0.00 3.95
338 339 7.088589 AGTTGAATCATCTATTTTGGAACGG 57.911 36.000 0.00 0.00 0.00 4.44
341 342 5.822519 TGAATCATCTATTTTGGAACGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
363 2339 5.422650 AGGGAGTACTTCCTGTTAAGACATC 59.577 44.000 22.87 0.00 45.98 3.06
458 2434 0.106419 TTGGGTGGCCGAGAACTTTT 60.106 50.000 0.00 0.00 0.00 2.27
472 2448 7.467403 GCCGAGAACTTTTCTTATAAAGATGGG 60.467 40.741 0.00 0.00 40.87 4.00
587 2563 7.038799 ACAAATATTGCCAAAGATGAGAAAGGT 60.039 33.333 0.00 0.00 0.00 3.50
600 2576 4.997565 TGAGAAAGGTTGCTCTGTTTTTG 58.002 39.130 0.00 0.00 32.44 2.44
601 2577 4.462483 TGAGAAAGGTTGCTCTGTTTTTGT 59.538 37.500 0.00 0.00 32.44 2.83
602 2578 5.047377 TGAGAAAGGTTGCTCTGTTTTTGTT 60.047 36.000 0.00 0.00 32.44 2.83
603 2579 5.793817 AGAAAGGTTGCTCTGTTTTTGTTT 58.206 33.333 0.00 0.00 0.00 2.83
604 2580 6.230472 AGAAAGGTTGCTCTGTTTTTGTTTT 58.770 32.000 0.00 0.00 0.00 2.43
605 2581 6.710295 AGAAAGGTTGCTCTGTTTTTGTTTTT 59.290 30.769 0.00 0.00 0.00 1.94
634 2610 3.118223 AGACTCTAATAAGTGGGCAAGGC 60.118 47.826 0.00 0.00 0.00 4.35
668 2644 8.821147 ACGTTGTGTTATGTTATCAGTTCTTA 57.179 30.769 0.00 0.00 0.00 2.10
698 2674 3.056250 CAGATTCACCACTAGCAGACTGT 60.056 47.826 3.99 0.00 0.00 3.55
769 2751 6.501805 TCACTATCCAATATGCAAGGTCCTAT 59.498 38.462 0.00 0.00 0.00 2.57
770 2752 6.820656 CACTATCCAATATGCAAGGTCCTATC 59.179 42.308 0.00 0.00 0.00 2.08
806 2793 4.583871 AGAGAAGTAGGGAAAACATGCAG 58.416 43.478 0.00 0.00 0.00 4.41
969 2961 5.451908 TGTTGAGCTCATGATTTCGTTTTC 58.548 37.500 19.04 0.00 0.00 2.29
1010 3002 6.980577 ACATTGGACCCTTAATGGAGATTAA 58.019 36.000 3.52 0.00 38.33 1.40
1358 5558 2.237393 TGCCTCCAATTGTTTTGTGC 57.763 45.000 4.43 0.00 0.00 4.57
1457 5658 4.243383 GCATTCAGCGGCGTTTTT 57.757 50.000 9.37 0.00 0.00 1.94
1480 5681 0.379316 GACGCCACAAACGAGGTTTT 59.621 50.000 0.00 0.00 33.10 2.43
1483 5684 0.741915 GCCACAAACGAGGTTTTGGA 59.258 50.000 9.99 0.00 40.25 3.53
1495 5696 4.142600 CGAGGTTTTGGAGCAATTTCCTAG 60.143 45.833 0.00 0.00 38.12 3.02
1572 5776 5.009110 GGGGTCTTCTCTTTGTCTCTTTTTG 59.991 44.000 0.00 0.00 0.00 2.44
1664 5868 2.435805 AGCCCATTAGCGAGAGAAATGA 59.564 45.455 0.00 0.00 37.88 2.57
1692 5896 6.260050 TCAGTACTTGTCATTTCTGAAACACC 59.740 38.462 4.73 0.00 31.85 4.16
1867 6080 3.146847 CCACCAGACCAAGAAAGGTAAC 58.853 50.000 0.00 0.00 43.38 2.50
1888 6101 4.997565 ACGTTATTGGCAAGAAATCCATG 58.002 39.130 9.12 0.00 31.54 3.66
1913 6126 7.094118 TGTGCCCTTTTTACTGATACATAAACC 60.094 37.037 0.00 0.00 0.00 3.27
1945 6158 2.188829 CATTGATGCCGACGCCCAT 61.189 57.895 0.00 0.00 0.00 4.00
2215 6457 3.118482 TCGTAGTCTCGGTTGATAGGAGT 60.118 47.826 0.00 0.00 0.00 3.85
2241 6483 2.029918 GGGTTTTTGCCTAACTGCTCAG 60.030 50.000 0.00 0.00 0.00 3.35
4241 8497 1.557371 TGAGTTCCCGTTCATATGCCA 59.443 47.619 0.00 0.00 0.00 4.92
4344 8600 2.726989 CGTATGTAGACGCGTCACACTT 60.727 50.000 37.85 30.16 35.79 3.16
4684 8940 3.596214 GAACGAGCATTTGGACCTCTTA 58.404 45.455 0.00 0.00 0.00 2.10
5160 9416 0.394192 CTTGCTCGGATGATGCCCTA 59.606 55.000 0.00 0.00 0.00 3.53
5350 9607 0.179084 GGATGGCGTCGAGGAAATCA 60.179 55.000 9.75 1.66 0.00 2.57
6000 10260 4.483243 GATTGGGCGCCCTTCCGA 62.483 66.667 43.34 23.22 36.94 4.55
6340 10603 2.106683 GCACGCCATTAGTTCGCCT 61.107 57.895 0.00 0.00 0.00 5.52
6560 10823 1.153745 GCGAGCGGATCTGACTTGT 60.154 57.895 5.48 0.00 0.00 3.16
7275 11579 2.048023 AGCGCCCCACATGACAATG 61.048 57.895 2.29 0.00 39.89 2.82
7408 11712 3.960102 TGGGAATGGATATTGGTTTCTGC 59.040 43.478 0.00 0.00 0.00 4.26
7429 11733 4.785950 GTCATCGCGACAGCTGTA 57.214 55.556 21.73 4.02 44.69 2.74
7605 12159 4.071961 TCTGCTAACTCTTGCAACTTGA 57.928 40.909 0.00 0.00 38.81 3.02
7777 12336 6.599244 CAGTGATGGGAACTATTTTGCTTCTA 59.401 38.462 0.00 0.00 0.00 2.10
7812 12371 4.229876 GTTTGATTAGCCACTGTTTGAGC 58.770 43.478 0.00 0.00 0.00 4.26
7813 12372 3.138884 TGATTAGCCACTGTTTGAGCA 57.861 42.857 0.00 0.00 0.00 4.26
7891 12452 8.095452 GAGGATCCCATGGACAATATATTACT 57.905 38.462 15.22 0.00 32.98 2.24
7892 12453 9.213777 GAGGATCCCATGGACAATATATTACTA 57.786 37.037 15.22 0.00 32.98 1.82
8010 12585 6.095377 TCTATGCTATTCATCTATGCACACG 58.905 40.000 0.00 0.00 36.44 4.49
8031 12606 8.751335 CACACGCTTGAAACTATTATTGTTTTT 58.249 29.630 6.27 0.00 37.70 1.94
8095 12671 4.204012 GCTGCCCCTAACATTAACACATA 58.796 43.478 0.00 0.00 0.00 2.29
8096 12672 4.036380 GCTGCCCCTAACATTAACACATAC 59.964 45.833 0.00 0.00 0.00 2.39
8097 12673 5.437060 CTGCCCCTAACATTAACACATACT 58.563 41.667 0.00 0.00 0.00 2.12
8098 12674 5.433526 TGCCCCTAACATTAACACATACTC 58.566 41.667 0.00 0.00 0.00 2.59
8099 12675 4.820173 GCCCCTAACATTAACACATACTCC 59.180 45.833 0.00 0.00 0.00 3.85
8100 12676 5.374071 CCCCTAACATTAACACATACTCCC 58.626 45.833 0.00 0.00 0.00 4.30
8101 12677 5.132144 CCCCTAACATTAACACATACTCCCT 59.868 44.000 0.00 0.00 0.00 4.20
8102 12678 6.289064 CCCTAACATTAACACATACTCCCTC 58.711 44.000 0.00 0.00 0.00 4.30
8103 12679 6.289064 CCTAACATTAACACATACTCCCTCC 58.711 44.000 0.00 0.00 0.00 4.30
8104 12680 4.402056 ACATTAACACATACTCCCTCCG 57.598 45.455 0.00 0.00 0.00 4.63
8105 12681 3.773119 ACATTAACACATACTCCCTCCGT 59.227 43.478 0.00 0.00 0.00 4.69
8106 12682 4.224370 ACATTAACACATACTCCCTCCGTT 59.776 41.667 0.00 0.00 0.00 4.44
8107 12683 4.460948 TTAACACATACTCCCTCCGTTC 57.539 45.455 0.00 0.00 0.00 3.95
8108 12684 1.192428 ACACATACTCCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62
8109 12685 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
8110 12686 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
8111 12687 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
8112 12688 2.844348 ACATACTCCCTCCGTTCCAAAT 59.156 45.455 0.00 0.00 0.00 2.32
8113 12689 3.265995 ACATACTCCCTCCGTTCCAAATT 59.734 43.478 0.00 0.00 0.00 1.82
8114 12690 4.472108 ACATACTCCCTCCGTTCCAAATTA 59.528 41.667 0.00 0.00 0.00 1.40
8115 12691 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
8116 12692 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
8117 12693 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
8118 12694 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
8119 12695 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
8120 12696 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
8121 12697 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
8122 12698 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
8123 12699 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
8124 12700 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
8125 12701 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
8126 12702 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
8127 12703 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
8128 12704 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
8129 12705 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
8130 12706 4.092821 CCAAATTACTCGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
8131 12707 5.390461 CCAAATTACTCGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
8132 12708 6.250819 CAAATTACTCGTCGCAGAAATGAAT 58.749 36.000 0.00 0.00 39.69 2.57
8133 12709 4.840401 TTACTCGTCGCAGAAATGAATG 57.160 40.909 0.00 0.00 39.69 2.67
8134 12710 2.688507 ACTCGTCGCAGAAATGAATGT 58.311 42.857 0.00 0.00 39.69 2.71
8135 12711 3.845178 ACTCGTCGCAGAAATGAATGTA 58.155 40.909 0.00 0.00 39.69 2.29
8136 12712 4.433615 ACTCGTCGCAGAAATGAATGTAT 58.566 39.130 0.00 0.00 39.69 2.29
8137 12713 4.504461 ACTCGTCGCAGAAATGAATGTATC 59.496 41.667 0.00 0.00 39.69 2.24
8138 12714 4.682787 TCGTCGCAGAAATGAATGTATCT 58.317 39.130 0.00 0.00 39.69 1.98
8139 12715 5.827666 TCGTCGCAGAAATGAATGTATCTA 58.172 37.500 0.00 0.00 39.69 1.98
8140 12716 5.915196 TCGTCGCAGAAATGAATGTATCTAG 59.085 40.000 0.00 0.00 39.69 2.43
8141 12717 5.915196 CGTCGCAGAAATGAATGTATCTAGA 59.085 40.000 0.00 0.00 39.69 2.43
8142 12718 6.417930 CGTCGCAGAAATGAATGTATCTAGAA 59.582 38.462 0.00 0.00 39.69 2.10
8143 12719 7.559845 GTCGCAGAAATGAATGTATCTAGAAC 58.440 38.462 0.00 0.00 39.69 3.01
8144 12720 7.436673 GTCGCAGAAATGAATGTATCTAGAACT 59.563 37.037 0.00 0.00 39.69 3.01
8145 12721 8.630037 TCGCAGAAATGAATGTATCTAGAACTA 58.370 33.333 0.00 0.00 0.00 2.24
8146 12722 9.249457 CGCAGAAATGAATGTATCTAGAACTAA 57.751 33.333 0.00 0.00 0.00 2.24
8173 12749 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
8174 12750 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
8175 12751 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
8176 12752 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
8177 12753 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
8178 12754 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
8179 12755 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
8180 12756 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
8181 12757 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
8182 12758 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
8183 12759 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
8184 12760 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
8185 12761 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
8295 12993 5.078949 AGAACACCATGGATTCACAAATCA 58.921 37.500 21.47 0.00 42.66 2.57
8333 13031 3.680490 TCTCACCAGACAACAACAACAA 58.320 40.909 0.00 0.00 0.00 2.83
8334 13032 3.438781 TCTCACCAGACAACAACAACAAC 59.561 43.478 0.00 0.00 0.00 3.32
8335 13033 3.149981 TCACCAGACAACAACAACAACA 58.850 40.909 0.00 0.00 0.00 3.33
8402 13100 2.952245 CAGCTCCAGCAACAGCAC 59.048 61.111 0.48 0.00 45.16 4.40
8592 13575 0.248621 GCAGCAGTTCAAACAAGCGT 60.249 50.000 0.00 0.00 37.31 5.07
8614 13597 2.293677 CGCAGTCGATGTAAGTATCCCT 59.706 50.000 0.00 0.00 38.10 4.20
8626 13610 5.724854 TGTAAGTATCCCTAGTTCTTTGCCT 59.275 40.000 0.00 0.00 0.00 4.75
8665 13649 2.309755 ACTGCTTCAATCCCTTGATCCA 59.690 45.455 0.00 0.00 40.95 3.41
8668 13652 2.680805 GCTTCAATCCCTTGATCCACGA 60.681 50.000 0.00 0.00 40.95 4.35
8720 13704 2.883828 CGCCTGTGAAGGTGGAGGT 61.884 63.158 0.00 0.00 35.91 3.85
8795 13779 3.041211 CTCCCAAGTAGACCATCCATCA 58.959 50.000 0.00 0.00 0.00 3.07
8806 13790 4.103627 AGACCATCCATCATTGTGCTGATA 59.896 41.667 0.00 0.00 34.11 2.15
8833 13817 0.531090 ACGGTCGCTGTACTTGCAAA 60.531 50.000 0.00 0.00 0.00 3.68
8837 13821 2.159653 GGTCGCTGTACTTGCAAATCTG 60.160 50.000 0.00 0.00 0.00 2.90
8838 13822 2.736721 GTCGCTGTACTTGCAAATCTGA 59.263 45.455 0.00 0.00 0.00 3.27
8839 13823 3.186409 GTCGCTGTACTTGCAAATCTGAA 59.814 43.478 0.00 0.00 0.00 3.02
8841 13825 4.274705 TCGCTGTACTTGCAAATCTGAAAA 59.725 37.500 0.00 0.00 0.00 2.29
8843 13827 5.280945 GCTGTACTTGCAAATCTGAAAACA 58.719 37.500 0.00 0.00 0.00 2.83
8845 13829 5.587289 TGTACTTGCAAATCTGAAAACACC 58.413 37.500 0.00 0.00 0.00 4.16
8847 13831 6.544197 TGTACTTGCAAATCTGAAAACACCTA 59.456 34.615 0.00 0.00 0.00 3.08
8848 13832 5.831997 ACTTGCAAATCTGAAAACACCTAC 58.168 37.500 0.00 0.00 0.00 3.18
8849 13833 5.594317 ACTTGCAAATCTGAAAACACCTACT 59.406 36.000 0.00 0.00 0.00 2.57
8850 13834 5.689383 TGCAAATCTGAAAACACCTACTC 57.311 39.130 0.00 0.00 0.00 2.59
8852 13836 4.518970 GCAAATCTGAAAACACCTACTCCA 59.481 41.667 0.00 0.00 0.00 3.86
8854 13838 6.615088 CAAATCTGAAAACACCTACTCCATG 58.385 40.000 0.00 0.00 0.00 3.66
8856 13840 5.560722 TCTGAAAACACCTACTCCATGAA 57.439 39.130 0.00 0.00 0.00 2.57
8859 13843 5.441500 TGAAAACACCTACTCCATGAACAA 58.558 37.500 0.00 0.00 0.00 2.83
8860 13844 6.068010 TGAAAACACCTACTCCATGAACAAT 58.932 36.000 0.00 0.00 0.00 2.71
8861 13845 5.964958 AAACACCTACTCCATGAACAATG 57.035 39.130 0.00 0.00 35.89 2.82
8868 13852 1.203052 CTCCATGAACAATGTGTGCCC 59.797 52.381 0.00 0.00 34.11 5.36
8869 13853 0.967662 CCATGAACAATGTGTGCCCA 59.032 50.000 0.00 0.00 34.11 5.36
8870 13854 1.343789 CCATGAACAATGTGTGCCCAA 59.656 47.619 0.00 0.00 34.11 4.12
8874 13858 2.234661 TGAACAATGTGTGCCCAACAAA 59.765 40.909 0.00 0.00 41.57 2.83
8875 13859 3.118482 TGAACAATGTGTGCCCAACAAAT 60.118 39.130 0.00 0.00 41.57 2.32
8876 13860 4.100035 TGAACAATGTGTGCCCAACAAATA 59.900 37.500 0.00 0.00 41.57 1.40
8877 13861 4.679373 ACAATGTGTGCCCAACAAATAA 57.321 36.364 0.00 0.00 41.57 1.40
8878 13862 4.630111 ACAATGTGTGCCCAACAAATAAG 58.370 39.130 0.00 0.00 41.57 1.73
8880 13864 1.967066 TGTGTGCCCAACAAATAAGGG 59.033 47.619 0.00 0.00 41.57 3.95
8885 13869 0.536724 CCCAACAAATAAGGGCAGCC 59.463 55.000 1.26 1.26 35.44 4.85
8886 13870 0.536724 CCAACAAATAAGGGCAGCCC 59.463 55.000 24.90 24.90 45.90 5.19
8896 13880 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
8897 13881 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
8898 13882 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
8899 13883 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
8900 13884 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
8906 13890 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
8907 13891 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
8908 13892 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
8909 13893 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
8910 13894 3.019003 ATGTAGCTCCCGCTTGCGT 62.019 57.895 13.97 0.00 46.47 5.24
8911 13895 1.672854 ATGTAGCTCCCGCTTGCGTA 61.673 55.000 13.97 1.06 46.47 4.42
8912 13896 1.589196 GTAGCTCCCGCTTGCGTAG 60.589 63.158 13.97 11.35 46.47 3.51
8913 13897 2.782222 TAGCTCCCGCTTGCGTAGG 61.782 63.158 13.97 8.87 46.47 3.18
8915 13899 3.771160 CTCCCGCTTGCGTAGGGT 61.771 66.667 13.97 0.00 45.27 4.34
8916 13900 3.718210 CTCCCGCTTGCGTAGGGTC 62.718 68.421 13.97 0.00 45.27 4.46
8917 13901 3.771160 CCCGCTTGCGTAGGGTCT 61.771 66.667 13.97 0.00 40.27 3.85
8918 13902 2.202756 CCGCTTGCGTAGGGTCTC 60.203 66.667 13.97 0.00 35.13 3.36
8919 13903 2.579787 CGCTTGCGTAGGGTCTCG 60.580 66.667 6.86 0.00 32.41 4.04
8920 13904 2.202756 GCTTGCGTAGGGTCTCGG 60.203 66.667 0.00 0.00 0.00 4.63
8921 13905 2.494918 CTTGCGTAGGGTCTCGGG 59.505 66.667 0.00 0.00 0.00 5.14
8922 13906 2.036098 TTGCGTAGGGTCTCGGGA 59.964 61.111 0.00 0.00 0.00 5.14
8923 13907 1.601419 CTTGCGTAGGGTCTCGGGAA 61.601 60.000 0.00 0.00 0.00 3.97
8924 13908 1.601419 TTGCGTAGGGTCTCGGGAAG 61.601 60.000 0.00 0.00 0.00 3.46
8925 13909 2.783288 GCGTAGGGTCTCGGGAAGG 61.783 68.421 0.00 0.00 0.00 3.46
8926 13910 2.125961 CGTAGGGTCTCGGGAAGGG 61.126 68.421 0.00 0.00 0.00 3.95
8927 13911 1.001376 GTAGGGTCTCGGGAAGGGT 59.999 63.158 0.00 0.00 0.00 4.34
8928 13912 1.042003 GTAGGGTCTCGGGAAGGGTC 61.042 65.000 0.00 0.00 0.00 4.46
8929 13913 2.234246 TAGGGTCTCGGGAAGGGTCC 62.234 65.000 0.00 0.00 44.10 4.46
8930 13914 3.459063 GGTCTCGGGAAGGGTCCG 61.459 72.222 0.00 0.00 46.04 4.79
8936 13920 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
8937 13921 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
8938 13922 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
8939 13923 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
8940 13924 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
8941 13925 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
8942 13926 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
8952 13936 4.986054 ACCACTTTGGGTCTATTGTACA 57.014 40.909 0.00 0.00 43.37 2.90
8953 13937 4.906618 ACCACTTTGGGTCTATTGTACAG 58.093 43.478 0.00 0.00 43.37 2.74
8954 13938 4.349930 ACCACTTTGGGTCTATTGTACAGT 59.650 41.667 0.00 0.00 43.37 3.55
8955 13939 4.935808 CCACTTTGGGTCTATTGTACAGTC 59.064 45.833 0.00 0.00 32.67 3.51
8956 13940 5.280011 CCACTTTGGGTCTATTGTACAGTCT 60.280 44.000 0.00 0.00 32.67 3.24
8957 13941 6.231211 CACTTTGGGTCTATTGTACAGTCTT 58.769 40.000 0.00 0.00 0.00 3.01
8958 13942 6.710744 CACTTTGGGTCTATTGTACAGTCTTT 59.289 38.462 0.00 0.00 0.00 2.52
8959 13943 6.935208 ACTTTGGGTCTATTGTACAGTCTTTC 59.065 38.462 0.00 0.00 0.00 2.62
8960 13944 5.416271 TGGGTCTATTGTACAGTCTTTCC 57.584 43.478 0.00 0.00 0.00 3.13
8961 13945 5.091552 TGGGTCTATTGTACAGTCTTTCCT 58.908 41.667 0.00 0.00 0.00 3.36
8962 13946 5.546499 TGGGTCTATTGTACAGTCTTTCCTT 59.454 40.000 0.00 0.00 0.00 3.36
8963 13947 6.727231 TGGGTCTATTGTACAGTCTTTCCTTA 59.273 38.462 0.00 0.00 0.00 2.69
8964 13948 7.236019 TGGGTCTATTGTACAGTCTTTCCTTAA 59.764 37.037 0.00 0.00 0.00 1.85
8965 13949 7.548427 GGGTCTATTGTACAGTCTTTCCTTAAC 59.452 40.741 0.00 0.00 0.00 2.01
8966 13950 7.548427 GGTCTATTGTACAGTCTTTCCTTAACC 59.452 40.741 0.00 0.00 0.00 2.85
8967 13951 7.548427 GTCTATTGTACAGTCTTTCCTTAACCC 59.452 40.741 0.00 0.00 0.00 4.11
8997 13981 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
9063 14047 5.538118 ACAACAAAATAAGCTACCAAAGGC 58.462 37.500 0.00 0.00 0.00 4.35
9152 14136 7.176515 TGCTAGCTGAAAATATCCAAGTCAAAA 59.823 33.333 17.23 0.00 0.00 2.44
9323 14314 4.160329 TGTGAACTGGGAGTATTCTGAGT 58.840 43.478 0.00 0.00 0.00 3.41
9451 14449 7.466050 GCAGAGGTGTAACTAAAACTATCATGC 60.466 40.741 0.00 0.00 36.74 4.06
9601 14602 5.932303 TCCTAAAAGGACGACAAGAAGAATG 59.068 40.000 0.00 0.00 40.06 2.67
9602 14603 5.122396 CCTAAAAGGACGACAAGAAGAATGG 59.878 44.000 0.00 0.00 37.67 3.16
9603 14604 2.100605 AGGACGACAAGAAGAATGGC 57.899 50.000 0.00 0.00 0.00 4.40
9604 14605 1.087501 GGACGACAAGAAGAATGGCC 58.912 55.000 0.00 0.00 0.00 5.36
9614 14615 1.334869 GAAGAATGGCCGGCACAATAG 59.665 52.381 30.85 0.00 0.00 1.73
9645 14646 6.645790 AGATGATCCAAGGAATAATTGTGC 57.354 37.500 0.00 0.00 0.00 4.57
9666 14686 2.489329 CTGACACACAAAATAGGGCCAG 59.511 50.000 6.18 0.00 0.00 4.85
9668 14688 2.890945 GACACACAAAATAGGGCCAGTT 59.109 45.455 6.18 0.00 0.00 3.16
9737 14757 4.165565 AGGCTATAAGGACCTGGGTTAAAC 59.834 45.833 0.00 0.00 30.82 2.01
9768 14788 2.598045 CCATCGAATGGCTGAGACG 58.402 57.895 0.00 0.00 44.70 4.18
9769 14789 0.103026 CCATCGAATGGCTGAGACGA 59.897 55.000 0.00 0.00 44.70 4.20
9770 14790 1.485397 CATCGAATGGCTGAGACGAG 58.515 55.000 0.00 0.00 36.49 4.18
9771 14791 1.107114 ATCGAATGGCTGAGACGAGT 58.893 50.000 0.00 0.00 36.49 4.18
9772 14792 0.171231 TCGAATGGCTGAGACGAGTG 59.829 55.000 0.00 0.00 0.00 3.51
9773 14793 0.109086 CGAATGGCTGAGACGAGTGT 60.109 55.000 0.00 0.00 0.00 3.55
9774 14794 1.670087 CGAATGGCTGAGACGAGTGTT 60.670 52.381 0.00 0.00 0.00 3.32
9775 14795 2.417719 GAATGGCTGAGACGAGTGTTT 58.582 47.619 0.00 0.00 0.00 2.83
9776 14796 1.800805 ATGGCTGAGACGAGTGTTTG 58.199 50.000 0.00 0.00 0.00 2.93
9777 14797 0.750249 TGGCTGAGACGAGTGTTTGA 59.250 50.000 0.00 0.00 0.00 2.69
9778 14798 1.140816 GGCTGAGACGAGTGTTTGAC 58.859 55.000 0.00 0.00 0.00 3.18
9779 14799 1.538204 GGCTGAGACGAGTGTTTGACA 60.538 52.381 0.00 0.00 0.00 3.58
9780 14800 2.201732 GCTGAGACGAGTGTTTGACAA 58.798 47.619 0.00 0.00 0.00 3.18
9781 14801 2.607635 GCTGAGACGAGTGTTTGACAAA 59.392 45.455 0.00 0.00 0.00 2.83
9782 14802 3.063452 GCTGAGACGAGTGTTTGACAAAA 59.937 43.478 1.27 0.00 0.00 2.44
9783 14803 4.436852 GCTGAGACGAGTGTTTGACAAAAA 60.437 41.667 1.27 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.490381 GTGAGGTTAGGGTTCAAGAAAAAGAT 59.510 38.462 0.00 0.00 0.00 2.40
251 252 1.548719 CGGAGGGAGTACATGACAACA 59.451 52.381 0.00 0.00 0.00 3.33
252 253 1.549170 ACGGAGGGAGTACATGACAAC 59.451 52.381 0.00 0.00 0.00 3.32
269 270 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
270 271 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
313 314 7.393234 TCCGTTCCAAAATAGATGATTCAACTT 59.607 33.333 1.47 0.00 0.00 2.66
314 315 6.884295 TCCGTTCCAAAATAGATGATTCAACT 59.116 34.615 1.83 1.83 0.00 3.16
315 316 7.083875 TCCGTTCCAAAATAGATGATTCAAC 57.916 36.000 0.00 0.00 0.00 3.18
316 317 6.318648 CCTCCGTTCCAAAATAGATGATTCAA 59.681 38.462 0.00 0.00 0.00 2.69
317 318 5.822519 CCTCCGTTCCAAAATAGATGATTCA 59.177 40.000 0.00 0.00 0.00 2.57
318 319 5.239525 CCCTCCGTTCCAAAATAGATGATTC 59.760 44.000 0.00 0.00 0.00 2.52
320 321 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
321 322 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
322 323 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
323 324 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
324 325 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
326 327 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
327 328 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
328 329 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
329 330 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
330 331 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
331 332 1.553706 GAAGTACTCCCTCCGTTCCA 58.446 55.000 0.00 0.00 0.00 3.53
332 333 0.822811 GGAAGTACTCCCTCCGTTCC 59.177 60.000 0.00 0.00 38.44 3.62
333 334 1.477295 CAGGAAGTACTCCCTCCGTTC 59.523 57.143 0.00 0.00 46.81 3.95
337 338 4.160065 GTCTTAACAGGAAGTACTCCCTCC 59.840 50.000 0.00 0.01 46.81 4.30
338 339 4.771054 TGTCTTAACAGGAAGTACTCCCTC 59.229 45.833 0.00 0.00 46.81 4.30
341 342 6.532988 AGATGTCTTAACAGGAAGTACTCC 57.467 41.667 0.00 0.00 45.81 3.85
363 2339 5.220416 GCACTTAGCAACGGTGAGTTAATAG 60.220 44.000 3.55 0.00 42.02 1.73
458 2434 8.593945 ATTTCTGCAAACCCATCTTTATAAGA 57.406 30.769 0.00 0.00 42.69 2.10
472 2448 5.046910 TCGAAGATCCAATTTCTGCAAAC 57.953 39.130 0.00 0.00 0.00 2.93
634 2610 3.254060 CATAACACAACGTCTCCAGAGG 58.746 50.000 0.00 0.00 36.14 3.69
668 2644 5.221722 TGCTAGTGGTGAATCTGACTTTTCT 60.222 40.000 0.00 0.00 0.00 2.52
726 2703 2.693074 GTGAAACCTTTCCCAAGCTCAA 59.307 45.455 0.00 0.00 36.36 3.02
806 2793 8.920509 AAAAACTAAATGTCATTATAACCGCC 57.079 30.769 0.00 0.00 0.00 6.13
844 2831 7.148306 CCTTGATTTGTTAAGCCGTACTGTAAT 60.148 37.037 0.00 0.00 0.00 1.89
1010 3002 2.239907 GCCACTCTACTCCCCATCTTTT 59.760 50.000 0.00 0.00 0.00 2.27
1457 5658 0.319211 CCTCGTTTGTGGCGTCTGTA 60.319 55.000 0.00 0.00 0.00 2.74
1480 5681 1.743772 GCGCTCTAGGAAATTGCTCCA 60.744 52.381 0.00 0.00 38.02 3.86
1483 5684 1.065854 ACAGCGCTCTAGGAAATTGCT 60.066 47.619 7.13 0.00 0.00 3.91
1495 5696 1.978542 TCGAGAAGTTTACAGCGCTC 58.021 50.000 7.13 0.00 0.00 5.03
1634 5838 2.500098 TCGCTAATGGGCTTGTCTAGTT 59.500 45.455 0.00 0.00 0.00 2.24
1664 5868 7.498900 TGTTTCAGAAATGACAAGTACTGATGT 59.501 33.333 0.00 0.00 35.00 3.06
1692 5896 5.219633 AGTTAAAAGGTGCAAACATAAGCG 58.780 37.500 0.00 0.00 0.00 4.68
1867 6080 4.799949 CACATGGATTTCTTGCCAATAACG 59.200 41.667 0.00 0.00 37.78 3.18
1888 6101 7.255569 GGTTTATGTATCAGTAAAAAGGGCAC 58.744 38.462 0.00 0.00 0.00 5.01
1913 6126 1.825191 CAATGGAGGGGACATGCCG 60.825 63.158 0.00 0.00 37.63 5.69
1945 6158 5.964477 AGAAACACCTCCTAATGGATACTCA 59.036 40.000 0.00 0.00 42.29 3.41
2002 6221 1.896660 GCTGTGGAGGCGTTTTCCA 60.897 57.895 1.31 1.31 42.30 3.53
2003 6222 1.600916 AGCTGTGGAGGCGTTTTCC 60.601 57.895 0.00 0.00 35.20 3.13
2215 6457 3.153919 CAGTTAGGCAAAAACCCTAGCA 58.846 45.455 4.53 0.00 38.27 3.49
2241 6483 2.777832 AATCTCTTCTCCTGCACCAC 57.222 50.000 0.00 0.00 0.00 4.16
4241 8497 1.524863 CCTCGTCACCGTTCTCTGGT 61.525 60.000 0.00 0.00 41.47 4.00
4344 8600 2.431771 CACGGCCGTTCATCGTCA 60.432 61.111 32.11 0.00 37.94 4.35
5278 9534 3.688159 GGCGTACCACCACTCCGT 61.688 66.667 0.00 0.00 35.26 4.69
6000 10260 1.002274 CCCCCTGCTCCTAGTCTGT 59.998 63.158 0.00 0.00 0.00 3.41
6085 10348 3.111939 CCACCGGTGCGTTTTCAA 58.888 55.556 29.75 0.00 0.00 2.69
6560 10823 0.316204 GACTTCCCCAAGTTCGACGA 59.684 55.000 0.00 0.00 43.37 4.20
7275 11579 9.237846 GCATTTTTATAAACACCTCAGAATAGC 57.762 33.333 0.00 0.00 0.00 2.97
7299 11603 1.673920 GAAAACGTTCTGTTCAGGGCA 59.326 47.619 0.00 0.00 40.84 5.36
7441 11745 8.372459 TGTGAGTGCCTCTAAAAATAGAAGTAA 58.628 33.333 4.21 0.00 0.00 2.24
7605 12159 3.117512 ACATGAGTTCTGGGAGTTGGTTT 60.118 43.478 0.00 0.00 0.00 3.27
7777 12336 7.651704 GTGGCTAATCAAACAAACAAATGTAGT 59.348 33.333 0.00 0.00 32.02 2.73
7820 12379 7.899973 AGAATAGCAACCATTTGACTCAAATT 58.100 30.769 13.41 2.61 40.60 1.82
7821 12380 7.472334 AGAATAGCAACCATTTGACTCAAAT 57.528 32.000 10.71 10.71 43.71 2.32
7890 12451 1.395826 CCGGGTGGGCTCTCTCTTAG 61.396 65.000 0.00 0.00 0.00 2.18
7891 12452 1.381327 CCGGGTGGGCTCTCTCTTA 60.381 63.158 0.00 0.00 0.00 2.10
7892 12453 2.685380 CCGGGTGGGCTCTCTCTT 60.685 66.667 0.00 0.00 0.00 2.85
8031 12606 4.821805 GGTTTCACAGAGAAGACATTTCCA 59.178 41.667 0.00 0.00 37.57 3.53
8095 12671 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
8096 12672 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
8097 12673 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
8098 12674 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
8099 12675 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
8100 12676 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
8101 12677 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
8102 12678 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
8103 12679 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
8104 12680 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
8105 12681 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
8106 12682 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
8107 12683 4.092821 TCATTTCTGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
8108 12684 5.203358 TCATTTCTGCGACGAGTAATTTG 57.797 39.130 0.00 0.00 0.00 2.32
8109 12685 5.856126 TTCATTTCTGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
8110 12686 5.351465 ACATTCATTTCTGCGACGAGTAATT 59.649 36.000 0.00 0.00 0.00 1.40
8111 12687 4.870426 ACATTCATTTCTGCGACGAGTAAT 59.130 37.500 0.00 0.00 0.00 1.89
8112 12688 4.242475 ACATTCATTTCTGCGACGAGTAA 58.758 39.130 0.00 0.00 0.00 2.24
8113 12689 3.845178 ACATTCATTTCTGCGACGAGTA 58.155 40.909 0.00 0.00 0.00 2.59
8114 12690 2.688507 ACATTCATTTCTGCGACGAGT 58.311 42.857 0.00 0.00 0.00 4.18
8115 12691 4.742167 AGATACATTCATTTCTGCGACGAG 59.258 41.667 0.00 0.00 0.00 4.18
8116 12692 4.682787 AGATACATTCATTTCTGCGACGA 58.317 39.130 0.00 0.00 0.00 4.20
8117 12693 5.915196 TCTAGATACATTCATTTCTGCGACG 59.085 40.000 0.00 0.00 0.00 5.12
8118 12694 7.436673 AGTTCTAGATACATTCATTTCTGCGAC 59.563 37.037 0.00 0.00 0.00 5.19
8119 12695 7.492524 AGTTCTAGATACATTCATTTCTGCGA 58.507 34.615 0.00 0.00 0.00 5.10
8120 12696 7.706281 AGTTCTAGATACATTCATTTCTGCG 57.294 36.000 0.00 0.00 0.00 5.18
8147 12723 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
8148 12724 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
8149 12725 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
8150 12726 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
8151 12727 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
8152 12728 6.393990 GTCGCAGAAATGGATGTATCTAGAT 58.606 40.000 10.73 10.73 39.69 1.98
8153 12729 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
8154 12730 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
8155 12731 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
8156 12732 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
8157 12733 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
8158 12734 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
8159 12735 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
8160 12736 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
8161 12737 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
8162 12738 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
8163 12739 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
8164 12740 3.301835 CGAATTACTCGTCGCAGAAATGG 60.302 47.826 0.00 0.00 42.89 3.16
8165 12741 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
8166 12742 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
8167 12743 2.095110 TCCGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 46.65 2.52
8168 12744 1.469703 TCCGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 46.65 3.02
8169 12745 1.089112 TCCGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 46.65 4.26
8170 12746 1.582502 GTTCCGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 46.65 5.18
8171 12747 1.621107 GTTCCGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 46.65 5.10
8172 12748 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.000 0.00 0.00 46.65 5.19
8173 12749 1.186030 CCGTTCCGAATTACTCGTCG 58.814 55.000 0.00 0.00 46.65 5.12
8174 12750 2.448219 CTCCGTTCCGAATTACTCGTC 58.552 52.381 0.00 0.00 46.65 4.20
8175 12751 1.133790 CCTCCGTTCCGAATTACTCGT 59.866 52.381 0.00 0.00 46.65 4.18
8177 12753 1.753073 TCCCTCCGTTCCGAATTACTC 59.247 52.381 0.00 0.00 0.00 2.59
8178 12754 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
8179 12755 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
8180 12756 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
8181 12757 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
8182 12758 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
8183 12759 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
8184 12760 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
8185 12761 1.755179 TAACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
8186 12762 5.303845 ACATATTAACTACTCCCTCCGTTCC 59.696 44.000 0.00 0.00 0.00 3.62
8187 12763 6.402456 ACATATTAACTACTCCCTCCGTTC 57.598 41.667 0.00 0.00 0.00 3.95
8188 12764 6.803366 AACATATTAACTACTCCCTCCGTT 57.197 37.500 0.00 0.00 0.00 4.44
8189 12765 6.803366 AAACATATTAACTACTCCCTCCGT 57.197 37.500 0.00 0.00 0.00 4.69
8190 12766 9.774413 AATTAAACATATTAACTACTCCCTCCG 57.226 33.333 0.00 0.00 0.00 4.63
8193 12769 9.350951 GCCAATTAAACATATTAACTACTCCCT 57.649 33.333 0.00 0.00 0.00 4.20
8194 12770 8.287503 CGCCAATTAAACATATTAACTACTCCC 58.712 37.037 0.00 0.00 0.00 4.30
8195 12771 8.287503 CCGCCAATTAAACATATTAACTACTCC 58.712 37.037 0.00 0.00 0.00 3.85
8196 12772 7.801783 GCCGCCAATTAAACATATTAACTACTC 59.198 37.037 0.00 0.00 0.00 2.59
8197 12773 7.519328 CGCCGCCAATTAAACATATTAACTACT 60.519 37.037 0.00 0.00 0.00 2.57
8198 12774 6.575942 CGCCGCCAATTAAACATATTAACTAC 59.424 38.462 0.00 0.00 0.00 2.73
8199 12775 6.660722 CGCCGCCAATTAAACATATTAACTA 58.339 36.000 0.00 0.00 0.00 2.24
8295 12993 2.161030 GAGAGATCCGTACGGGCTATT 58.839 52.381 32.80 20.16 34.94 1.73
8333 13031 1.078356 CCTCAGCTGCTGCATCTGT 60.078 57.895 26.87 0.94 42.74 3.41
8334 13032 2.473760 GCCTCAGCTGCTGCATCTG 61.474 63.158 23.58 23.58 42.74 2.90
8335 13033 2.124653 GCCTCAGCTGCTGCATCT 60.125 61.111 24.38 0.13 42.74 2.90
8402 13100 2.973224 GTGTTGTTGAAGCTGCAATACG 59.027 45.455 11.18 0.00 0.00 3.06
8531 13514 0.038166 GGTTTCCAGACATGCCCAGA 59.962 55.000 0.00 0.00 0.00 3.86
8614 13597 4.083003 CGGCATAAAACAGGCAAAGAACTA 60.083 41.667 0.00 0.00 34.97 2.24
8626 13610 2.094803 CAGTTGATGGCGGCATAAAACA 60.095 45.455 33.00 22.83 0.00 2.83
8665 13649 2.295349 ACGAGTTCCTACAACACATCGT 59.705 45.455 0.00 0.00 37.33 3.73
8668 13652 3.366679 CCGTACGAGTTCCTACAACACAT 60.367 47.826 18.76 0.00 0.00 3.21
8795 13779 6.509418 ACCGTACATTTTTATCAGCACAAT 57.491 33.333 0.00 0.00 0.00 2.71
8806 13790 3.656559 AGTACAGCGACCGTACATTTTT 58.343 40.909 10.73 0.00 41.40 1.94
8833 13817 5.762179 TCATGGAGTAGGTGTTTTCAGAT 57.238 39.130 0.00 0.00 0.00 2.90
8837 13821 6.016276 ACATTGTTCATGGAGTAGGTGTTTTC 60.016 38.462 0.00 0.00 37.17 2.29
8838 13822 5.833131 ACATTGTTCATGGAGTAGGTGTTTT 59.167 36.000 0.00 0.00 37.17 2.43
8839 13823 5.241506 CACATTGTTCATGGAGTAGGTGTTT 59.758 40.000 0.00 0.00 37.17 2.83
8841 13825 4.202461 ACACATTGTTCATGGAGTAGGTGT 60.202 41.667 1.01 1.01 37.17 4.16
8843 13827 4.326826 CACACATTGTTCATGGAGTAGGT 58.673 43.478 0.00 0.00 37.17 3.08
8845 13829 3.127548 GGCACACATTGTTCATGGAGTAG 59.872 47.826 0.00 0.00 37.17 2.57
8847 13831 1.888512 GGCACACATTGTTCATGGAGT 59.111 47.619 0.00 0.00 37.17 3.85
8848 13832 1.203052 GGGCACACATTGTTCATGGAG 59.797 52.381 0.00 0.00 37.17 3.86
8849 13833 1.255882 GGGCACACATTGTTCATGGA 58.744 50.000 0.00 0.00 37.17 3.41
8850 13834 0.967662 TGGGCACACATTGTTCATGG 59.032 50.000 0.00 0.00 37.17 3.66
8852 13836 2.037901 TGTTGGGCACACATTGTTCAT 58.962 42.857 0.00 0.00 0.00 2.57
8854 13838 2.593346 TTGTTGGGCACACATTGTTC 57.407 45.000 0.00 0.00 33.98 3.18
8856 13840 4.502950 CCTTATTTGTTGGGCACACATTGT 60.503 41.667 0.00 0.00 33.98 2.71
8859 13843 2.566724 CCCTTATTTGTTGGGCACACAT 59.433 45.455 0.00 0.00 33.98 3.21
8860 13844 1.967066 CCCTTATTTGTTGGGCACACA 59.033 47.619 0.00 0.00 33.98 3.72
8861 13845 2.741759 CCCTTATTTGTTGGGCACAC 57.258 50.000 0.00 0.00 33.98 3.82
8868 13852 0.173255 CGGGCTGCCCTTATTTGTTG 59.827 55.000 33.39 12.34 42.67 3.33
8869 13853 0.970427 CCGGGCTGCCCTTATTTGTT 60.970 55.000 33.39 0.00 42.67 2.83
8870 13854 1.379843 CCGGGCTGCCCTTATTTGT 60.380 57.895 33.39 0.00 42.67 2.83
8874 13858 4.506255 GCACCGGGCTGCCCTTAT 62.506 66.667 33.39 16.93 42.67 1.73
8880 13864 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
8881 13865 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
8882 13866 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
8883 13867 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
8884 13868 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
8901 13885 2.202756 GAGACCCTACGCAAGCGG 60.203 66.667 19.30 3.17 44.69 5.52
8902 13886 2.579787 CGAGACCCTACGCAAGCG 60.580 66.667 13.50 13.50 46.03 4.68
8903 13887 2.202756 CCGAGACCCTACGCAAGC 60.203 66.667 0.00 0.00 45.62 4.01
8905 13889 1.601419 CTTCCCGAGACCCTACGCAA 61.601 60.000 0.00 0.00 0.00 4.85
8906 13890 2.036098 TTCCCGAGACCCTACGCA 59.964 61.111 0.00 0.00 0.00 5.24
8907 13891 2.783288 CCTTCCCGAGACCCTACGC 61.783 68.421 0.00 0.00 0.00 4.42
8908 13892 2.125961 CCCTTCCCGAGACCCTACG 61.126 68.421 0.00 0.00 0.00 3.51
8909 13893 1.001376 ACCCTTCCCGAGACCCTAC 59.999 63.158 0.00 0.00 0.00 3.18
8910 13894 1.309006 GACCCTTCCCGAGACCCTA 59.691 63.158 0.00 0.00 0.00 3.53
8911 13895 2.039137 GACCCTTCCCGAGACCCT 59.961 66.667 0.00 0.00 0.00 4.34
8912 13896 3.082055 GGACCCTTCCCGAGACCC 61.082 72.222 0.00 0.00 35.57 4.46
8919 13903 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
8920 13904 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
8921 13905 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
8922 13906 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
8923 13907 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
8924 13908 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
8925 13909 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
8926 13910 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
8931 13915 4.349930 ACTGTACAATAGACCCAAAGTGGT 59.650 41.667 0.00 0.00 42.79 4.16
8932 13916 4.906618 ACTGTACAATAGACCCAAAGTGG 58.093 43.478 0.00 0.00 37.25 4.00
8933 13917 5.794894 AGACTGTACAATAGACCCAAAGTG 58.205 41.667 0.00 0.00 0.00 3.16
8934 13918 6.435292 AAGACTGTACAATAGACCCAAAGT 57.565 37.500 0.00 0.00 0.00 2.66
8935 13919 6.371825 GGAAAGACTGTACAATAGACCCAAAG 59.628 42.308 0.00 0.00 0.00 2.77
8936 13920 6.043938 AGGAAAGACTGTACAATAGACCCAAA 59.956 38.462 0.00 0.00 0.00 3.28
8937 13921 5.546499 AGGAAAGACTGTACAATAGACCCAA 59.454 40.000 0.00 0.00 0.00 4.12
8938 13922 5.091552 AGGAAAGACTGTACAATAGACCCA 58.908 41.667 0.00 0.00 0.00 4.51
8939 13923 5.678955 AGGAAAGACTGTACAATAGACCC 57.321 43.478 0.00 0.00 0.00 4.46
8940 13924 7.548427 GGTTAAGGAAAGACTGTACAATAGACC 59.452 40.741 0.00 0.00 0.00 3.85
8941 13925 7.548427 GGGTTAAGGAAAGACTGTACAATAGAC 59.452 40.741 0.00 0.00 0.00 2.59
8942 13926 7.578189 CGGGTTAAGGAAAGACTGTACAATAGA 60.578 40.741 0.00 0.00 0.00 1.98
8943 13927 6.534079 CGGGTTAAGGAAAGACTGTACAATAG 59.466 42.308 0.00 0.00 0.00 1.73
8944 13928 6.014327 ACGGGTTAAGGAAAGACTGTACAATA 60.014 38.462 0.00 0.00 0.00 1.90
8945 13929 5.221783 ACGGGTTAAGGAAAGACTGTACAAT 60.222 40.000 0.00 0.00 0.00 2.71
8946 13930 4.101430 ACGGGTTAAGGAAAGACTGTACAA 59.899 41.667 0.00 0.00 0.00 2.41
8947 13931 3.642848 ACGGGTTAAGGAAAGACTGTACA 59.357 43.478 0.00 0.00 0.00 2.90
8948 13932 3.992427 CACGGGTTAAGGAAAGACTGTAC 59.008 47.826 0.00 0.00 0.00 2.90
8949 13933 3.896888 TCACGGGTTAAGGAAAGACTGTA 59.103 43.478 0.00 0.00 0.00 2.74
8950 13934 2.701951 TCACGGGTTAAGGAAAGACTGT 59.298 45.455 0.00 0.00 0.00 3.55
8951 13935 3.064931 GTCACGGGTTAAGGAAAGACTG 58.935 50.000 0.00 0.00 0.00 3.51
8952 13936 2.038164 GGTCACGGGTTAAGGAAAGACT 59.962 50.000 0.00 0.00 0.00 3.24
8953 13937 2.038164 AGGTCACGGGTTAAGGAAAGAC 59.962 50.000 0.00 0.00 0.00 3.01
8954 13938 2.301009 GAGGTCACGGGTTAAGGAAAGA 59.699 50.000 0.00 0.00 0.00 2.52
8955 13939 2.302157 AGAGGTCACGGGTTAAGGAAAG 59.698 50.000 0.00 0.00 0.00 2.62
8956 13940 2.332117 AGAGGTCACGGGTTAAGGAAA 58.668 47.619 0.00 0.00 0.00 3.13
8957 13941 2.019807 AGAGGTCACGGGTTAAGGAA 57.980 50.000 0.00 0.00 0.00 3.36
8958 13942 1.621814 CAAGAGGTCACGGGTTAAGGA 59.378 52.381 0.00 0.00 0.00 3.36
8959 13943 1.338769 CCAAGAGGTCACGGGTTAAGG 60.339 57.143 0.00 0.00 0.00 2.69
8960 13944 2.094762 CCAAGAGGTCACGGGTTAAG 57.905 55.000 0.00 0.00 0.00 1.85
9007 13991 1.841556 ACACGAAGGGGAGCCTTGA 60.842 57.895 0.00 0.00 0.00 3.02
9063 14047 7.858382 TGTAATCACGTGGAAGTTTATTTTGTG 59.142 33.333 17.00 0.00 0.00 3.33
9152 14136 5.437060 CCCACTGGTACTTACTTTATGCAT 58.563 41.667 3.79 3.79 0.00 3.96
9345 14342 2.504367 CCTCGATCAAACCCAAACTGT 58.496 47.619 0.00 0.00 0.00 3.55
9451 14449 5.962433 TCCTCGGTCTTTTGATACTAACAG 58.038 41.667 0.00 0.00 0.00 3.16
9460 14458 6.234920 TCACAATTAATCCTCGGTCTTTTGA 58.765 36.000 0.00 0.00 0.00 2.69
9541 14539 8.802267 TGGTATATTCTGAAGGAAACCAAAAAG 58.198 33.333 11.81 0.00 38.59 2.27
9589 14590 0.960364 TGCCGGCCATTCTTCTTGTC 60.960 55.000 26.77 0.00 0.00 3.18
9601 14602 5.001232 TCTTATTTATCTATTGTGCCGGCC 58.999 41.667 26.77 16.24 0.00 6.13
9602 14603 6.371548 TCATCTTATTTATCTATTGTGCCGGC 59.628 38.462 22.73 22.73 0.00 6.13
9603 14604 7.905604 TCATCTTATTTATCTATTGTGCCGG 57.094 36.000 0.00 0.00 0.00 6.13
9604 14605 8.607459 GGATCATCTTATTTATCTATTGTGCCG 58.393 37.037 0.00 0.00 0.00 5.69
9645 14646 2.489329 CTGGCCCTATTTTGTGTGTCAG 59.511 50.000 0.00 0.00 0.00 3.51
9666 14686 2.940147 TCGCAATGTTTGGTATGCAAC 58.060 42.857 0.00 0.00 38.69 4.17
9668 14688 3.509740 CATTCGCAATGTTTGGTATGCA 58.490 40.909 0.00 0.00 38.69 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.