Multiple sequence alignment - TraesCS3A01G406600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G406600 chr3A 100.000 3920 0 0 1 3920 651590728 651586809 0.000000e+00 7239.0
1 TraesCS3A01G406600 chr3A 83.696 92 13 2 6 95 645992602 645992693 6.980000e-13 86.1
2 TraesCS3A01G406600 chr3D 94.464 3450 156 18 478 3920 516387291 516383870 0.000000e+00 5280.0
3 TraesCS3A01G406600 chr3D 90.769 65 5 1 2482 2546 48365691 48365628 6.980000e-13 86.1
4 TraesCS3A01G406600 chr3D 82.022 89 15 1 8 95 568428395 568428483 1.510000e-09 75.0
5 TraesCS3A01G406600 chr3B 92.821 3120 183 18 808 3920 679647828 679644743 0.000000e+00 4482.0
6 TraesCS3A01G406600 chr3B 93.980 299 14 2 454 748 679648150 679647852 2.150000e-122 449.0
7 TraesCS3A01G406600 chr1A 76.836 967 199 16 1862 2820 459950081 459949132 4.490000e-144 521.0
8 TraesCS3A01G406600 chr1D 76.319 967 204 16 1862 2820 360390300 360389351 9.780000e-136 494.0
9 TraesCS3A01G406600 chr7D 88.276 145 14 1 2569 2713 621613723 621613582 1.870000e-38 171.0
10 TraesCS3A01G406600 chr7D 97.059 68 1 1 2371 2438 621613802 621613736 3.200000e-21 113.0
11 TraesCS3A01G406600 chr5D 79.904 209 34 7 2 204 529228304 529228098 3.160000e-31 147.0
12 TraesCS3A01G406600 chr2A 87.402 127 13 3 3 127 723535301 723535176 4.080000e-30 143.0
13 TraesCS3A01G406600 chr2A 81.319 91 13 3 2460 2548 729500624 729500536 1.950000e-08 71.3
14 TraesCS3A01G406600 chr1B 86.047 129 16 2 3 130 184747774 184747647 1.900000e-28 137.0
15 TraesCS3A01G406600 chr7A 95.588 68 2 1 2371 2438 717067868 717067802 1.490000e-19 108.0
16 TraesCS3A01G406600 chr6A 84.536 97 13 2 2441 2536 570382447 570382352 1.160000e-15 95.3
17 TraesCS3A01G406600 chr5B 79.231 130 20 6 2 126 493625010 493625137 2.510000e-12 84.2
18 TraesCS3A01G406600 chr2D 81.319 91 13 3 2460 2548 595290206 595290118 1.950000e-08 71.3
19 TraesCS3A01G406600 chr2D 89.583 48 5 0 2497 2544 492022266 492022219 1.180000e-05 62.1
20 TraesCS3A01G406600 chr2B 80.000 90 16 2 2460 2548 723043321 723043233 9.090000e-07 65.8
21 TraesCS3A01G406600 chr2B 89.583 48 5 0 2497 2544 576744550 576744503 1.180000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G406600 chr3A 651586809 651590728 3919 True 7239.0 7239 100.0000 1 3920 1 chr3A.!!$R1 3919
1 TraesCS3A01G406600 chr3D 516383870 516387291 3421 True 5280.0 5280 94.4640 478 3920 1 chr3D.!!$R2 3442
2 TraesCS3A01G406600 chr3B 679644743 679648150 3407 True 2465.5 4482 93.4005 454 3920 2 chr3B.!!$R1 3466
3 TraesCS3A01G406600 chr1A 459949132 459950081 949 True 521.0 521 76.8360 1862 2820 1 chr1A.!!$R1 958
4 TraesCS3A01G406600 chr1D 360389351 360390300 949 True 494.0 494 76.3190 1862 2820 1 chr1D.!!$R1 958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 963 0.029035 AGATCGGTCGATTCGGTTCG 59.971 55.0 6.18 8.03 40.46 3.95 F
2707 2721 0.247460 CATGGAGAGGTTCGTGCTCA 59.753 55.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2769 2783 1.077501 CATGTCCCCGTCCAGCATT 60.078 57.895 0.00 0.00 0.0 3.56 R
3655 3672 0.036294 ACGCTGAAGGCTTCCCTAAC 60.036 55.000 23.68 8.14 41.9 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.617322 GGGAAGGGAACAACAAGGAC 58.383 55.000 0.00 0.00 0.00 3.85
20 21 1.145119 GGGAAGGGAACAACAAGGACT 59.855 52.381 0.00 0.00 0.00 3.85
21 22 2.424379 GGGAAGGGAACAACAAGGACTT 60.424 50.000 0.00 0.00 0.00 3.01
22 23 2.623416 GGAAGGGAACAACAAGGACTTG 59.377 50.000 10.34 10.34 45.58 3.16
23 24 2.364972 AGGGAACAACAAGGACTTGG 57.635 50.000 15.72 2.45 44.45 3.61
24 25 1.850345 AGGGAACAACAAGGACTTGGA 59.150 47.619 15.72 0.00 44.45 3.53
25 26 2.158608 AGGGAACAACAAGGACTTGGAG 60.159 50.000 15.72 9.94 44.45 3.86
26 27 2.230660 GGAACAACAAGGACTTGGAGG 58.769 52.381 15.72 7.46 44.45 4.30
27 28 2.158667 GGAACAACAAGGACTTGGAGGA 60.159 50.000 15.72 0.00 44.45 3.71
28 29 2.640316 ACAACAAGGACTTGGAGGAC 57.360 50.000 15.72 0.00 44.45 3.85
29 30 1.202651 ACAACAAGGACTTGGAGGACG 60.203 52.381 15.72 1.37 44.45 4.79
30 31 0.396811 AACAAGGACTTGGAGGACGG 59.603 55.000 15.72 0.00 44.45 4.79
31 32 1.296715 CAAGGACTTGGAGGACGGG 59.703 63.158 4.15 0.00 36.95 5.28
32 33 1.152096 AAGGACTTGGAGGACGGGT 60.152 57.895 0.00 0.00 0.00 5.28
33 34 1.481056 AAGGACTTGGAGGACGGGTG 61.481 60.000 0.00 0.00 0.00 4.61
34 35 2.047179 GACTTGGAGGACGGGTGC 60.047 66.667 0.00 0.00 0.00 5.01
35 36 3.607370 GACTTGGAGGACGGGTGCC 62.607 68.421 0.00 0.00 0.00 5.01
46 47 2.750237 GGGTGCCGGCGAAGATTT 60.750 61.111 23.90 0.00 0.00 2.17
47 48 1.450669 GGGTGCCGGCGAAGATTTA 60.451 57.895 23.90 0.00 0.00 1.40
48 49 1.436983 GGGTGCCGGCGAAGATTTAG 61.437 60.000 23.90 0.00 0.00 1.85
49 50 0.461339 GGTGCCGGCGAAGATTTAGA 60.461 55.000 23.90 0.00 0.00 2.10
50 51 0.651031 GTGCCGGCGAAGATTTAGAC 59.349 55.000 23.90 6.17 0.00 2.59
51 52 0.535335 TGCCGGCGAAGATTTAGACT 59.465 50.000 23.90 0.00 0.00 3.24
52 53 1.752498 TGCCGGCGAAGATTTAGACTA 59.248 47.619 23.90 0.00 0.00 2.59
53 54 2.223735 TGCCGGCGAAGATTTAGACTAG 60.224 50.000 23.90 0.00 0.00 2.57
54 55 2.862921 GCCGGCGAAGATTTAGACTAGG 60.863 54.545 12.58 0.00 0.00 3.02
55 56 2.361438 CCGGCGAAGATTTAGACTAGGT 59.639 50.000 9.30 0.00 0.00 3.08
56 57 3.181478 CCGGCGAAGATTTAGACTAGGTT 60.181 47.826 9.30 0.00 0.00 3.50
57 58 4.037208 CCGGCGAAGATTTAGACTAGGTTA 59.963 45.833 9.30 0.00 0.00 2.85
58 59 5.213675 CGGCGAAGATTTAGACTAGGTTAG 58.786 45.833 0.00 0.00 0.00 2.34
59 60 5.530712 GGCGAAGATTTAGACTAGGTTAGG 58.469 45.833 0.00 0.00 0.00 2.69
60 61 5.509332 GGCGAAGATTTAGACTAGGTTAGGG 60.509 48.000 0.00 0.00 0.00 3.53
61 62 5.068855 GCGAAGATTTAGACTAGGTTAGGGT 59.931 44.000 0.00 0.00 0.00 4.34
62 63 6.406737 GCGAAGATTTAGACTAGGTTAGGGTT 60.407 42.308 0.00 0.00 0.00 4.11
63 64 7.201835 CGAAGATTTAGACTAGGTTAGGGTTC 58.798 42.308 0.00 0.00 0.00 3.62
64 65 6.712179 AGATTTAGACTAGGTTAGGGTTCG 57.288 41.667 0.00 0.00 0.00 3.95
65 66 5.597594 AGATTTAGACTAGGTTAGGGTTCGG 59.402 44.000 0.00 0.00 0.00 4.30
66 67 4.591321 TTAGACTAGGTTAGGGTTCGGA 57.409 45.455 0.00 0.00 0.00 4.55
67 68 2.732763 AGACTAGGTTAGGGTTCGGAC 58.267 52.381 0.00 0.00 0.00 4.79
68 69 1.403323 GACTAGGTTAGGGTTCGGACG 59.597 57.143 0.00 0.00 0.00 4.79
69 70 1.272147 ACTAGGTTAGGGTTCGGACGT 60.272 52.381 0.00 0.00 0.00 4.34
70 71 1.821136 CTAGGTTAGGGTTCGGACGTT 59.179 52.381 0.00 0.00 0.00 3.99
71 72 1.051008 AGGTTAGGGTTCGGACGTTT 58.949 50.000 0.00 0.00 0.00 3.60
72 73 1.417517 AGGTTAGGGTTCGGACGTTTT 59.582 47.619 0.00 0.00 0.00 2.43
73 74 1.532437 GGTTAGGGTTCGGACGTTTTG 59.468 52.381 0.00 0.00 0.00 2.44
74 75 2.212652 GTTAGGGTTCGGACGTTTTGT 58.787 47.619 0.00 0.00 0.00 2.83
75 76 2.613595 GTTAGGGTTCGGACGTTTTGTT 59.386 45.455 0.00 0.00 0.00 2.83
76 77 1.753930 AGGGTTCGGACGTTTTGTTT 58.246 45.000 0.00 0.00 0.00 2.83
77 78 2.916640 AGGGTTCGGACGTTTTGTTTA 58.083 42.857 0.00 0.00 0.00 2.01
78 79 3.277715 AGGGTTCGGACGTTTTGTTTAA 58.722 40.909 0.00 0.00 0.00 1.52
79 80 3.313249 AGGGTTCGGACGTTTTGTTTAAG 59.687 43.478 0.00 0.00 0.00 1.85
80 81 3.548616 GGGTTCGGACGTTTTGTTTAAGG 60.549 47.826 0.00 0.00 0.00 2.69
81 82 3.312146 GGTTCGGACGTTTTGTTTAAGGA 59.688 43.478 0.00 0.00 0.00 3.36
82 83 4.201901 GGTTCGGACGTTTTGTTTAAGGAA 60.202 41.667 0.00 0.00 0.00 3.36
83 84 5.331098 GTTCGGACGTTTTGTTTAAGGAAA 58.669 37.500 0.00 0.00 0.00 3.13
84 85 5.754543 TCGGACGTTTTGTTTAAGGAAAT 57.245 34.783 0.00 0.00 0.00 2.17
85 86 6.857777 TCGGACGTTTTGTTTAAGGAAATA 57.142 33.333 0.00 0.00 0.00 1.40
86 87 7.437793 TCGGACGTTTTGTTTAAGGAAATAT 57.562 32.000 0.00 0.00 0.00 1.28
87 88 7.299586 TCGGACGTTTTGTTTAAGGAAATATG 58.700 34.615 0.00 0.00 0.00 1.78
88 89 7.172875 TCGGACGTTTTGTTTAAGGAAATATGA 59.827 33.333 0.00 0.00 0.00 2.15
89 90 7.269724 CGGACGTTTTGTTTAAGGAAATATGAC 59.730 37.037 0.00 0.00 0.00 3.06
90 91 8.077386 GGACGTTTTGTTTAAGGAAATATGACA 58.923 33.333 0.00 0.00 0.00 3.58
91 92 9.453325 GACGTTTTGTTTAAGGAAATATGACAA 57.547 29.630 0.00 0.00 0.00 3.18
92 93 9.804758 ACGTTTTGTTTAAGGAAATATGACAAA 57.195 25.926 0.00 0.00 34.76 2.83
101 102 9.781834 TTAAGGAAATATGACAAAAATGTAGCG 57.218 29.630 0.00 0.00 0.00 4.26
102 103 7.624360 AGGAAATATGACAAAAATGTAGCGA 57.376 32.000 0.00 0.00 0.00 4.93
103 104 8.050778 AGGAAATATGACAAAAATGTAGCGAA 57.949 30.769 0.00 0.00 0.00 4.70
104 105 8.686334 AGGAAATATGACAAAAATGTAGCGAAT 58.314 29.630 0.00 0.00 0.00 3.34
105 106 8.745837 GGAAATATGACAAAAATGTAGCGAATG 58.254 33.333 0.00 0.00 0.00 2.67
106 107 9.289303 GAAATATGACAAAAATGTAGCGAATGT 57.711 29.630 0.00 0.00 0.00 2.71
107 108 8.619146 AATATGACAAAAATGTAGCGAATGTG 57.381 30.769 0.00 0.00 0.00 3.21
108 109 4.225984 TGACAAAAATGTAGCGAATGTGC 58.774 39.130 0.00 0.00 0.00 4.57
110 111 4.475944 ACAAAAATGTAGCGAATGTGCTC 58.524 39.130 0.00 0.00 45.87 4.26
111 112 3.764885 AAAATGTAGCGAATGTGCTCC 57.235 42.857 0.00 0.00 45.87 4.70
112 113 1.290203 AATGTAGCGAATGTGCTCCG 58.710 50.000 0.00 0.00 45.87 4.63
113 114 0.530650 ATGTAGCGAATGTGCTCCGG 60.531 55.000 0.00 0.00 45.87 5.14
114 115 1.153628 GTAGCGAATGTGCTCCGGT 60.154 57.895 0.00 0.00 45.87 5.28
115 116 0.739813 GTAGCGAATGTGCTCCGGTT 60.740 55.000 0.00 0.00 45.87 4.44
116 117 0.036765 TAGCGAATGTGCTCCGGTTT 60.037 50.000 0.00 0.00 45.87 3.27
117 118 0.036765 AGCGAATGTGCTCCGGTTTA 60.037 50.000 0.00 0.00 42.95 2.01
118 119 0.800012 GCGAATGTGCTCCGGTTTAA 59.200 50.000 0.00 0.00 0.00 1.52
119 120 1.198178 GCGAATGTGCTCCGGTTTAAA 59.802 47.619 0.00 0.00 0.00 1.52
120 121 2.159435 GCGAATGTGCTCCGGTTTAAAT 60.159 45.455 0.00 0.00 0.00 1.40
121 122 3.425404 CGAATGTGCTCCGGTTTAAATG 58.575 45.455 0.00 0.00 0.00 2.32
122 123 3.126171 CGAATGTGCTCCGGTTTAAATGA 59.874 43.478 0.00 0.00 0.00 2.57
123 124 4.378978 CGAATGTGCTCCGGTTTAAATGAA 60.379 41.667 0.00 0.00 0.00 2.57
124 125 5.461032 AATGTGCTCCGGTTTAAATGAAA 57.539 34.783 0.00 0.00 0.00 2.69
125 126 4.920640 TGTGCTCCGGTTTAAATGAAAA 57.079 36.364 0.00 0.00 0.00 2.29
126 127 5.461032 TGTGCTCCGGTTTAAATGAAAAT 57.539 34.783 0.00 0.00 0.00 1.82
127 128 5.848406 TGTGCTCCGGTTTAAATGAAAATT 58.152 33.333 0.00 0.00 0.00 1.82
128 129 6.982852 TGTGCTCCGGTTTAAATGAAAATTA 58.017 32.000 0.00 0.00 0.00 1.40
129 130 7.607250 TGTGCTCCGGTTTAAATGAAAATTAT 58.393 30.769 0.00 0.00 0.00 1.28
130 131 7.757624 TGTGCTCCGGTTTAAATGAAAATTATC 59.242 33.333 0.00 0.00 0.00 1.75
131 132 7.222031 GTGCTCCGGTTTAAATGAAAATTATCC 59.778 37.037 0.00 0.00 0.00 2.59
132 133 7.123547 TGCTCCGGTTTAAATGAAAATTATCCT 59.876 33.333 0.00 0.00 0.00 3.24
133 134 7.435192 GCTCCGGTTTAAATGAAAATTATCCTG 59.565 37.037 0.00 0.00 0.00 3.86
134 135 7.777095 TCCGGTTTAAATGAAAATTATCCTGG 58.223 34.615 0.00 0.00 0.00 4.45
135 136 7.397761 TCCGGTTTAAATGAAAATTATCCTGGT 59.602 33.333 0.00 0.00 0.00 4.00
136 137 8.038351 CCGGTTTAAATGAAAATTATCCTGGTT 58.962 33.333 0.00 0.00 0.00 3.67
150 151 5.818136 ATCCTGGTTACATGAAAATGTCG 57.182 39.130 0.00 0.00 36.08 4.35
151 152 4.006989 TCCTGGTTACATGAAAATGTCGG 58.993 43.478 0.00 0.00 36.08 4.79
152 153 3.756434 CCTGGTTACATGAAAATGTCGGT 59.244 43.478 0.00 0.00 36.08 4.69
153 154 4.217550 CCTGGTTACATGAAAATGTCGGTT 59.782 41.667 0.00 0.00 36.08 4.44
154 155 5.278758 CCTGGTTACATGAAAATGTCGGTTT 60.279 40.000 0.00 0.00 36.08 3.27
155 156 5.524284 TGGTTACATGAAAATGTCGGTTTG 58.476 37.500 0.00 0.00 36.08 2.93
156 157 4.920927 GGTTACATGAAAATGTCGGTTTGG 59.079 41.667 0.00 0.00 36.08 3.28
157 158 5.508320 GGTTACATGAAAATGTCGGTTTGGT 60.508 40.000 0.00 0.00 36.08 3.67
158 159 4.237349 ACATGAAAATGTCGGTTTGGTC 57.763 40.909 0.00 0.00 0.00 4.02
159 160 3.005367 ACATGAAAATGTCGGTTTGGTCC 59.995 43.478 0.00 0.00 0.00 4.46
160 161 2.656002 TGAAAATGTCGGTTTGGTCCA 58.344 42.857 0.00 0.00 0.00 4.02
161 162 3.024547 TGAAAATGTCGGTTTGGTCCAA 58.975 40.909 0.00 0.00 0.00 3.53
162 163 3.639094 TGAAAATGTCGGTTTGGTCCAAT 59.361 39.130 4.80 0.00 0.00 3.16
163 164 4.100189 TGAAAATGTCGGTTTGGTCCAATT 59.900 37.500 4.80 0.00 0.00 2.32
164 165 4.681074 AAATGTCGGTTTGGTCCAATTT 57.319 36.364 4.80 0.00 0.00 1.82
165 166 5.793030 AAATGTCGGTTTGGTCCAATTTA 57.207 34.783 4.80 0.00 0.00 1.40
166 167 4.776795 ATGTCGGTTTGGTCCAATTTAC 57.223 40.909 4.80 0.42 0.00 2.01
167 168 3.822940 TGTCGGTTTGGTCCAATTTACT 58.177 40.909 4.80 0.00 0.00 2.24
168 169 4.208746 TGTCGGTTTGGTCCAATTTACTT 58.791 39.130 4.80 0.00 0.00 2.24
169 170 4.645588 TGTCGGTTTGGTCCAATTTACTTT 59.354 37.500 4.80 0.00 0.00 2.66
170 171 5.826737 TGTCGGTTTGGTCCAATTTACTTTA 59.173 36.000 4.80 0.00 0.00 1.85
171 172 6.320672 TGTCGGTTTGGTCCAATTTACTTTAA 59.679 34.615 4.80 0.00 0.00 1.52
172 173 7.147949 TGTCGGTTTGGTCCAATTTACTTTAAA 60.148 33.333 4.80 0.00 0.00 1.52
173 174 7.705752 GTCGGTTTGGTCCAATTTACTTTAAAA 59.294 33.333 4.80 0.00 0.00 1.52
174 175 8.422566 TCGGTTTGGTCCAATTTACTTTAAAAT 58.577 29.630 4.80 0.00 0.00 1.82
175 176 8.491950 CGGTTTGGTCCAATTTACTTTAAAATG 58.508 33.333 4.80 0.00 0.00 2.32
176 177 9.332502 GGTTTGGTCCAATTTACTTTAAAATGT 57.667 29.630 4.80 0.00 28.86 2.71
191 192 9.374838 ACTTTAAAATGTATAGAGGTACGGTTG 57.625 33.333 0.00 0.00 0.00 3.77
192 193 8.721019 TTTAAAATGTATAGAGGTACGGTTGG 57.279 34.615 0.00 0.00 0.00 3.77
193 194 6.549433 AAAATGTATAGAGGTACGGTTGGA 57.451 37.500 0.00 0.00 0.00 3.53
194 195 6.742559 AAATGTATAGAGGTACGGTTGGAT 57.257 37.500 0.00 0.00 0.00 3.41
195 196 5.723672 ATGTATAGAGGTACGGTTGGATG 57.276 43.478 0.00 0.00 0.00 3.51
196 197 4.795469 TGTATAGAGGTACGGTTGGATGA 58.205 43.478 0.00 0.00 0.00 2.92
197 198 4.581824 TGTATAGAGGTACGGTTGGATGAC 59.418 45.833 0.00 0.00 0.00 3.06
198 199 1.192428 AGAGGTACGGTTGGATGACC 58.808 55.000 0.00 0.00 36.31 4.02
204 205 3.905249 GGTTGGATGACCGGCTTC 58.095 61.111 0.00 2.12 39.42 3.86
205 206 1.299976 GGTTGGATGACCGGCTTCT 59.700 57.895 0.00 0.00 39.42 2.85
206 207 0.539986 GGTTGGATGACCGGCTTCTA 59.460 55.000 0.00 0.00 39.42 2.10
207 208 1.141053 GGTTGGATGACCGGCTTCTAT 59.859 52.381 0.00 0.00 39.42 1.98
208 209 2.367567 GGTTGGATGACCGGCTTCTATA 59.632 50.000 0.00 0.00 39.42 1.31
209 210 3.008049 GGTTGGATGACCGGCTTCTATAT 59.992 47.826 0.00 0.00 39.42 0.86
210 211 4.246458 GTTGGATGACCGGCTTCTATATC 58.754 47.826 0.00 0.00 39.42 1.63
211 212 2.832129 TGGATGACCGGCTTCTATATCC 59.168 50.000 0.00 5.34 39.42 2.59
212 213 2.832129 GGATGACCGGCTTCTATATCCA 59.168 50.000 0.00 0.00 34.27 3.41
213 214 3.118956 GGATGACCGGCTTCTATATCCAG 60.119 52.174 0.00 0.00 34.27 3.86
214 215 3.238788 TGACCGGCTTCTATATCCAGA 57.761 47.619 0.00 0.00 0.00 3.86
215 216 2.891580 TGACCGGCTTCTATATCCAGAC 59.108 50.000 0.00 0.00 0.00 3.51
216 217 3.158676 GACCGGCTTCTATATCCAGACT 58.841 50.000 0.00 0.00 0.00 3.24
217 218 3.158676 ACCGGCTTCTATATCCAGACTC 58.841 50.000 0.00 0.00 0.00 3.36
218 219 3.157881 CCGGCTTCTATATCCAGACTCA 58.842 50.000 0.00 0.00 0.00 3.41
219 220 3.766591 CCGGCTTCTATATCCAGACTCAT 59.233 47.826 0.00 0.00 0.00 2.90
220 221 4.221703 CCGGCTTCTATATCCAGACTCATT 59.778 45.833 0.00 0.00 0.00 2.57
221 222 5.406649 CGGCTTCTATATCCAGACTCATTC 58.593 45.833 0.00 0.00 0.00 2.67
222 223 5.406649 GGCTTCTATATCCAGACTCATTCG 58.593 45.833 0.00 0.00 0.00 3.34
223 224 4.862018 GCTTCTATATCCAGACTCATTCGC 59.138 45.833 0.00 0.00 0.00 4.70
224 225 4.686839 TCTATATCCAGACTCATTCGCG 57.313 45.455 0.00 0.00 0.00 5.87
225 226 4.324267 TCTATATCCAGACTCATTCGCGA 58.676 43.478 3.71 3.71 0.00 5.87
226 227 4.760204 TCTATATCCAGACTCATTCGCGAA 59.240 41.667 25.66 25.66 0.00 4.70
227 228 1.927895 ATCCAGACTCATTCGCGAAC 58.072 50.000 26.00 11.20 0.00 3.95
228 229 0.456142 TCCAGACTCATTCGCGAACG 60.456 55.000 26.00 17.62 42.01 3.95
229 230 1.413767 CCAGACTCATTCGCGAACGG 61.414 60.000 26.00 19.25 40.63 4.44
230 231 0.456142 CAGACTCATTCGCGAACGGA 60.456 55.000 26.00 22.33 40.63 4.69
231 232 0.456221 AGACTCATTCGCGAACGGAT 59.544 50.000 26.00 10.56 38.32 4.18
245 246 3.663202 GGATGCCGTGTCCGTTTT 58.337 55.556 0.00 0.00 0.00 2.43
246 247 2.843669 GGATGCCGTGTCCGTTTTA 58.156 52.632 0.00 0.00 0.00 1.52
247 248 1.158434 GGATGCCGTGTCCGTTTTAA 58.842 50.000 0.00 0.00 0.00 1.52
248 249 1.129811 GGATGCCGTGTCCGTTTTAAG 59.870 52.381 0.00 0.00 0.00 1.85
249 250 1.129811 GATGCCGTGTCCGTTTTAAGG 59.870 52.381 0.00 0.00 0.00 2.69
250 251 0.106335 TGCCGTGTCCGTTTTAAGGA 59.894 50.000 0.00 0.00 34.99 3.36
251 252 1.270947 TGCCGTGTCCGTTTTAAGGAT 60.271 47.619 0.00 0.00 40.30 3.24
252 253 1.395954 GCCGTGTCCGTTTTAAGGATC 59.604 52.381 0.00 0.00 40.30 3.36
253 254 2.690786 CCGTGTCCGTTTTAAGGATCA 58.309 47.619 0.00 0.00 40.30 2.92
254 255 2.671396 CCGTGTCCGTTTTAAGGATCAG 59.329 50.000 0.00 0.00 40.30 2.90
255 256 2.093783 CGTGTCCGTTTTAAGGATCAGC 59.906 50.000 0.00 0.00 40.30 4.26
256 257 3.071479 GTGTCCGTTTTAAGGATCAGCA 58.929 45.455 0.00 0.00 40.30 4.41
257 258 3.689649 GTGTCCGTTTTAAGGATCAGCAT 59.310 43.478 0.00 0.00 40.30 3.79
258 259 3.689161 TGTCCGTTTTAAGGATCAGCATG 59.311 43.478 0.00 0.00 40.30 4.06
259 260 3.065371 GTCCGTTTTAAGGATCAGCATGG 59.935 47.826 0.00 0.00 40.30 3.66
260 261 3.054728 TCCGTTTTAAGGATCAGCATGGA 60.055 43.478 0.00 0.00 31.72 3.41
261 262 3.313526 CCGTTTTAAGGATCAGCATGGAG 59.686 47.826 0.00 0.00 36.16 3.86
262 263 4.191544 CGTTTTAAGGATCAGCATGGAGA 58.808 43.478 0.00 0.00 36.16 3.71
263 264 4.818546 CGTTTTAAGGATCAGCATGGAGAT 59.181 41.667 0.00 0.00 36.16 2.75
264 265 5.049818 CGTTTTAAGGATCAGCATGGAGATC 60.050 44.000 0.00 0.00 39.87 2.75
268 269 2.476126 GATCAGCATGGAGATCCCTG 57.524 55.000 0.00 0.00 35.69 4.45
272 273 4.894201 CATGGAGATCCCTGCCAC 57.106 61.111 0.00 0.00 33.93 5.01
273 274 1.150081 CATGGAGATCCCTGCCACC 59.850 63.158 0.00 0.00 33.93 4.61
274 275 1.005289 ATGGAGATCCCTGCCACCT 59.995 57.895 0.00 0.00 33.93 4.00
275 276 0.625683 ATGGAGATCCCTGCCACCTT 60.626 55.000 0.00 0.00 33.93 3.50
276 277 1.274703 TGGAGATCCCTGCCACCTTC 61.275 60.000 0.00 0.00 35.38 3.46
277 278 1.274703 GGAGATCCCTGCCACCTTCA 61.275 60.000 0.00 0.00 0.00 3.02
278 279 0.842635 GAGATCCCTGCCACCTTCAT 59.157 55.000 0.00 0.00 0.00 2.57
279 280 0.842635 AGATCCCTGCCACCTTCATC 59.157 55.000 0.00 0.00 0.00 2.92
280 281 0.548031 GATCCCTGCCACCTTCATCA 59.452 55.000 0.00 0.00 0.00 3.07
281 282 1.144503 GATCCCTGCCACCTTCATCAT 59.855 52.381 0.00 0.00 0.00 2.45
282 283 1.002069 TCCCTGCCACCTTCATCATT 58.998 50.000 0.00 0.00 0.00 2.57
283 284 1.108776 CCCTGCCACCTTCATCATTG 58.891 55.000 0.00 0.00 0.00 2.82
284 285 1.617804 CCCTGCCACCTTCATCATTGT 60.618 52.381 0.00 0.00 0.00 2.71
285 286 1.475280 CCTGCCACCTTCATCATTGTG 59.525 52.381 0.00 0.00 0.00 3.33
286 287 2.439409 CTGCCACCTTCATCATTGTGA 58.561 47.619 0.00 0.00 0.00 3.58
287 288 2.821378 CTGCCACCTTCATCATTGTGAA 59.179 45.455 0.00 0.00 36.70 3.18
295 296 4.651994 CTTCATCATTGTGAAGTTACGCC 58.348 43.478 15.20 0.00 46.30 5.68
296 297 3.937814 TCATCATTGTGAAGTTACGCCT 58.062 40.909 0.00 0.00 0.00 5.52
297 298 4.323417 TCATCATTGTGAAGTTACGCCTT 58.677 39.130 0.00 0.00 0.00 4.35
298 299 4.391830 TCATCATTGTGAAGTTACGCCTTC 59.608 41.667 3.78 3.78 41.01 3.46
299 300 2.734606 TCATTGTGAAGTTACGCCTTCG 59.265 45.455 5.84 0.00 43.06 3.79
309 310 3.467119 CGCCTTCGTCCGTTCGTG 61.467 66.667 0.00 0.00 0.00 4.35
310 311 2.049802 GCCTTCGTCCGTTCGTGA 60.050 61.111 0.00 0.00 0.00 4.35
311 312 1.445582 GCCTTCGTCCGTTCGTGAT 60.446 57.895 0.00 0.00 0.00 3.06
312 313 1.012486 GCCTTCGTCCGTTCGTGATT 61.012 55.000 0.00 0.00 0.00 2.57
313 314 1.425412 CCTTCGTCCGTTCGTGATTT 58.575 50.000 0.00 0.00 0.00 2.17
314 315 1.796459 CCTTCGTCCGTTCGTGATTTT 59.204 47.619 0.00 0.00 0.00 1.82
315 316 2.222445 CCTTCGTCCGTTCGTGATTTTT 59.778 45.455 0.00 0.00 0.00 1.94
331 332 3.590643 TTTTTGTCCCCACGGAACA 57.409 47.368 0.00 0.00 40.92 3.18
332 333 1.848652 TTTTTGTCCCCACGGAACAA 58.151 45.000 0.00 1.28 40.92 2.83
333 334 2.074729 TTTTGTCCCCACGGAACAAT 57.925 45.000 5.26 0.00 40.92 2.71
334 335 1.323412 TTTGTCCCCACGGAACAATG 58.677 50.000 5.26 0.00 40.92 2.82
335 336 0.183971 TTGTCCCCACGGAACAATGT 59.816 50.000 0.00 0.00 40.92 2.71
336 337 0.536233 TGTCCCCACGGAACAATGTG 60.536 55.000 0.00 0.00 40.92 3.21
337 338 0.536460 GTCCCCACGGAACAATGTGT 60.536 55.000 0.00 0.00 40.92 3.72
338 339 1.057471 TCCCCACGGAACAATGTGTA 58.943 50.000 0.00 0.00 34.19 2.90
339 340 1.631388 TCCCCACGGAACAATGTGTAT 59.369 47.619 0.00 0.00 34.19 2.29
340 341 2.838813 TCCCCACGGAACAATGTGTATA 59.161 45.455 0.00 0.00 34.19 1.47
341 342 3.456644 TCCCCACGGAACAATGTGTATAT 59.543 43.478 0.00 0.00 34.19 0.86
342 343 3.563808 CCCCACGGAACAATGTGTATATG 59.436 47.826 0.00 0.00 34.28 1.78
343 344 4.196193 CCCACGGAACAATGTGTATATGT 58.804 43.478 0.00 0.00 34.28 2.29
344 345 4.272504 CCCACGGAACAATGTGTATATGTC 59.727 45.833 0.00 0.00 34.28 3.06
345 346 5.116180 CCACGGAACAATGTGTATATGTCT 58.884 41.667 0.00 0.00 34.28 3.41
346 347 5.234329 CCACGGAACAATGTGTATATGTCTC 59.766 44.000 0.00 0.00 34.28 3.36
347 348 5.234329 CACGGAACAATGTGTATATGTCTCC 59.766 44.000 0.00 0.00 0.00 3.71
348 349 5.128827 ACGGAACAATGTGTATATGTCTCCT 59.871 40.000 0.00 0.00 0.00 3.69
349 350 6.049149 CGGAACAATGTGTATATGTCTCCTT 58.951 40.000 0.00 0.00 0.00 3.36
350 351 6.538742 CGGAACAATGTGTATATGTCTCCTTT 59.461 38.462 0.00 0.00 0.00 3.11
351 352 7.709182 CGGAACAATGTGTATATGTCTCCTTTA 59.291 37.037 0.00 0.00 0.00 1.85
352 353 9.391006 GGAACAATGTGTATATGTCTCCTTTAA 57.609 33.333 0.00 0.00 0.00 1.52
357 358 9.698309 AATGTGTATATGTCTCCTTTAATCTCG 57.302 33.333 0.00 0.00 0.00 4.04
358 359 8.234136 TGTGTATATGTCTCCTTTAATCTCGT 57.766 34.615 0.00 0.00 0.00 4.18
359 360 8.692710 TGTGTATATGTCTCCTTTAATCTCGTT 58.307 33.333 0.00 0.00 0.00 3.85
360 361 9.530633 GTGTATATGTCTCCTTTAATCTCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
375 376 7.639162 AATCTCGTTTTATATAAGAGCGTGG 57.361 36.000 12.04 8.56 0.00 4.94
376 377 4.980434 TCTCGTTTTATATAAGAGCGTGGC 59.020 41.667 12.04 0.00 0.00 5.01
377 378 4.940463 TCGTTTTATATAAGAGCGTGGCT 58.060 39.130 12.04 0.00 43.88 4.75
378 379 6.016860 TCTCGTTTTATATAAGAGCGTGGCTA 60.017 38.462 12.04 0.00 39.88 3.93
379 380 6.147581 TCGTTTTATATAAGAGCGTGGCTAG 58.852 40.000 12.04 0.00 39.88 3.42
380 381 6.016860 TCGTTTTATATAAGAGCGTGGCTAGA 60.017 38.462 0.00 0.00 39.88 2.43
381 382 6.807230 CGTTTTATATAAGAGCGTGGCTAGAT 59.193 38.462 0.00 0.00 39.88 1.98
382 383 7.008447 CGTTTTATATAAGAGCGTGGCTAGATC 59.992 40.741 0.00 0.00 39.88 2.75
383 384 7.704578 TTTATATAAGAGCGTGGCTAGATCT 57.295 36.000 0.00 0.00 39.88 2.75
384 385 7.704578 TTATATAAGAGCGTGGCTAGATCTT 57.295 36.000 15.07 15.07 45.01 2.40
385 386 8.803397 TTATATAAGAGCGTGGCTAGATCTTA 57.197 34.615 17.59 17.59 46.29 2.10
386 387 7.704578 ATATAAGAGCGTGGCTAGATCTTAA 57.295 36.000 18.61 11.63 45.67 1.85
387 388 4.946478 AAGAGCGTGGCTAGATCTTAAT 57.054 40.909 0.00 0.00 41.79 1.40
388 389 4.513198 AGAGCGTGGCTAGATCTTAATC 57.487 45.455 0.00 0.00 39.88 1.75
389 390 3.891977 AGAGCGTGGCTAGATCTTAATCA 59.108 43.478 0.00 0.00 39.88 2.57
390 391 4.342378 AGAGCGTGGCTAGATCTTAATCAA 59.658 41.667 0.00 0.00 39.88 2.57
391 392 4.626042 AGCGTGGCTAGATCTTAATCAAG 58.374 43.478 0.00 0.00 36.99 3.02
392 393 3.185391 GCGTGGCTAGATCTTAATCAAGC 59.815 47.826 0.00 1.95 34.07 4.01
393 394 3.426859 CGTGGCTAGATCTTAATCAAGCG 59.573 47.826 0.00 0.00 34.07 4.68
394 395 4.621991 GTGGCTAGATCTTAATCAAGCGA 58.378 43.478 0.00 0.00 34.07 4.93
395 396 4.446051 GTGGCTAGATCTTAATCAAGCGAC 59.554 45.833 10.91 10.91 34.07 5.19
396 397 3.670991 GGCTAGATCTTAATCAAGCGACG 59.329 47.826 0.00 0.00 34.07 5.12
397 398 4.291783 GCTAGATCTTAATCAAGCGACGT 58.708 43.478 0.00 0.00 34.07 4.34
398 399 5.450171 GCTAGATCTTAATCAAGCGACGTA 58.550 41.667 0.00 0.00 34.07 3.57
399 400 5.913514 GCTAGATCTTAATCAAGCGACGTAA 59.086 40.000 0.00 0.00 34.07 3.18
400 401 6.129404 GCTAGATCTTAATCAAGCGACGTAAC 60.129 42.308 0.00 0.00 34.07 2.50
401 402 5.647589 AGATCTTAATCAAGCGACGTAACA 58.352 37.500 0.00 0.00 34.07 2.41
402 403 6.273825 AGATCTTAATCAAGCGACGTAACAT 58.726 36.000 0.00 0.00 34.07 2.71
403 404 7.423199 AGATCTTAATCAAGCGACGTAACATA 58.577 34.615 0.00 0.00 34.07 2.29
404 405 8.082852 AGATCTTAATCAAGCGACGTAACATAT 58.917 33.333 0.00 0.00 34.07 1.78
405 406 9.338291 GATCTTAATCAAGCGACGTAACATATA 57.662 33.333 0.00 0.00 31.76 0.86
406 407 8.723777 TCTTAATCAAGCGACGTAACATATAG 57.276 34.615 0.00 0.00 0.00 1.31
407 408 8.562052 TCTTAATCAAGCGACGTAACATATAGA 58.438 33.333 0.00 0.00 0.00 1.98
408 409 9.177304 CTTAATCAAGCGACGTAACATATAGAA 57.823 33.333 0.00 0.00 0.00 2.10
409 410 7.997107 AATCAAGCGACGTAACATATAGAAA 57.003 32.000 0.00 0.00 0.00 2.52
410 411 7.997107 ATCAAGCGACGTAACATATAGAAAA 57.003 32.000 0.00 0.00 0.00 2.29
411 412 7.815398 TCAAGCGACGTAACATATAGAAAAA 57.185 32.000 0.00 0.00 0.00 1.94
442 443 4.688419 CGCCTGCGTTTGCTGTGG 62.688 66.667 2.83 0.00 43.34 4.17
443 444 4.347453 GCCTGCGTTTGCTGTGGG 62.347 66.667 0.00 0.00 43.34 4.61
444 445 2.906897 CCTGCGTTTGCTGTGGGT 60.907 61.111 0.00 0.00 43.34 4.51
445 446 2.332514 CTGCGTTTGCTGTGGGTG 59.667 61.111 0.00 0.00 43.34 4.61
446 447 3.829272 CTGCGTTTGCTGTGGGTGC 62.829 63.158 0.00 0.00 43.34 5.01
447 448 3.898509 GCGTTTGCTGTGGGTGCA 61.899 61.111 0.00 0.00 38.39 4.57
448 449 2.332514 CGTTTGCTGTGGGTGCAG 59.667 61.111 0.00 0.00 41.71 4.41
464 465 2.202756 AGCGACGGAGCGAAATCC 60.203 61.111 0.00 0.00 43.00 3.01
570 574 9.935241 TGATAAAATATAGATCAGCCAGTTCTC 57.065 33.333 0.00 0.00 0.00 2.87
574 578 1.949799 AGATCAGCCAGTTCTCCTGT 58.050 50.000 0.00 0.00 39.74 4.00
600 604 5.693555 TGATCAAGCATCGTTATCATCAGAC 59.306 40.000 0.00 0.00 33.61 3.51
678 684 1.000385 CTCTCTCATGATCCTCGCCAC 60.000 57.143 0.00 0.00 0.00 5.01
712 718 2.279517 CCATCAGTACGGCGCCTC 60.280 66.667 26.68 14.68 0.00 4.70
717 723 1.141881 CAGTACGGCGCCTCAAGAT 59.858 57.895 26.68 5.14 0.00 2.40
749 757 3.817647 CAGACAGCTGAGCTTTTAACCTT 59.182 43.478 23.35 0.00 45.17 3.50
777 785 5.248640 TGACAACCAAGAAATGAGAGATCC 58.751 41.667 0.00 0.00 0.00 3.36
823 831 2.487428 CACTCCTCCTGCGTCTCG 59.513 66.667 0.00 0.00 0.00 4.04
825 833 3.522731 CTCCTCCTGCGTCTCGGG 61.523 72.222 0.00 0.00 42.90 5.14
864 872 3.606662 ACTCGCTCACTGCCACGT 61.607 61.111 0.00 0.00 38.78 4.49
927 935 0.931005 CTCCAGCGCCGAGTAATTTC 59.069 55.000 2.29 0.00 0.00 2.17
936 944 2.159198 GCCGAGTAATTTCACCCGACTA 60.159 50.000 0.00 0.00 0.00 2.59
955 963 0.029035 AGATCGGTCGATTCGGTTCG 59.971 55.000 6.18 8.03 40.46 3.95
962 970 0.320073 TCGATTCGGTTCGCACCTTT 60.320 50.000 6.18 0.00 41.64 3.11
1077 1085 2.822701 GCGGCGGGGGAAGTAAAG 60.823 66.667 9.78 0.00 0.00 1.85
1434 1442 3.311110 ACCGTCGGTGATGTGGCT 61.311 61.111 18.08 0.00 32.98 4.75
1483 1491 1.831286 AACCTCACCGACACGTCCT 60.831 57.895 0.00 0.00 0.00 3.85
1669 1677 3.844090 GCCTCGCTCTCTCCACCC 61.844 72.222 0.00 0.00 0.00 4.61
1746 1754 2.717044 AACCGTCATCCCGATCGCA 61.717 57.895 10.32 0.00 0.00 5.10
2397 2411 4.043200 GACTTTGGGCTGGCACGC 62.043 66.667 2.88 1.00 0.00 5.34
2490 2504 2.507102 CTGTACGGGCAGCTCACG 60.507 66.667 6.31 6.31 0.00 4.35
2707 2721 0.247460 CATGGAGAGGTTCGTGCTCA 59.753 55.000 0.00 0.00 0.00 4.26
2778 2792 0.674895 AGGCGTTGAGAATGCTGGAC 60.675 55.000 0.00 0.00 42.98 4.02
2940 2954 0.107165 GCTGGGTCAGGGGTTGATAC 60.107 60.000 0.00 0.00 38.29 2.24
2942 2956 0.988832 TGGGTCAGGGGTTGATACAC 59.011 55.000 0.00 0.00 38.29 2.90
3025 3039 6.959069 TACACCTTGTAACTGAAGTTCAGAGC 60.959 42.308 34.16 22.94 46.84 4.09
3044 3058 8.962884 TCAGAGCATTGTATTATAGCTTTTCA 57.037 30.769 0.00 0.00 35.36 2.69
3071 3085 9.613957 TTTTGTTGTATAAATGGATTGTGTACG 57.386 29.630 0.00 0.00 0.00 3.67
3121 3135 7.876936 ATGAAACATGTAGAAAGATGCTGAT 57.123 32.000 0.00 0.00 29.45 2.90
3122 3136 7.080353 TGAAACATGTAGAAAGATGCTGATG 57.920 36.000 0.00 0.00 29.45 3.07
3123 3137 6.880529 TGAAACATGTAGAAAGATGCTGATGA 59.119 34.615 0.00 0.00 29.45 2.92
3125 3139 7.876936 AACATGTAGAAAGATGCTGATGAAT 57.123 32.000 0.00 0.00 29.45 2.57
3126 3140 7.260558 ACATGTAGAAAGATGCTGATGAATG 57.739 36.000 0.00 0.00 29.45 2.67
3127 3141 7.052248 ACATGTAGAAAGATGCTGATGAATGA 58.948 34.615 0.00 0.00 29.45 2.57
3128 3142 7.555195 ACATGTAGAAAGATGCTGATGAATGAA 59.445 33.333 0.00 0.00 29.45 2.57
3202 3217 0.390735 ACTATTCACCGTCCGGCAAC 60.391 55.000 5.47 0.00 39.32 4.17
3239 3255 5.484173 AACAACATGCAGATACAATACCG 57.516 39.130 0.00 0.00 0.00 4.02
3281 3297 3.181471 CCAATGGTGGTGCAAACTTACAA 60.181 43.478 0.00 0.00 40.42 2.41
3331 3348 2.802106 GCGCGACTTCTAGAGCCT 59.198 61.111 12.10 0.00 0.00 4.58
3335 3352 0.101579 GCGACTTCTAGAGCCTGACC 59.898 60.000 0.00 0.00 0.00 4.02
3340 3357 3.633065 GACTTCTAGAGCCTGACCGTATT 59.367 47.826 0.00 0.00 0.00 1.89
3342 3359 2.307768 TCTAGAGCCTGACCGTATTGG 58.692 52.381 0.00 0.00 46.41 3.16
3347 3364 1.644786 GCCTGACCGTATTGGCACAC 61.645 60.000 0.00 0.00 44.34 3.82
3361 3378 2.505407 TGGCACACCATCAAGCTACTAT 59.495 45.455 0.00 0.00 42.67 2.12
3471 3488 1.378531 TACATTTGATGGAGTGGCGC 58.621 50.000 0.00 0.00 33.60 6.53
3629 3646 2.149578 GATATCATGCTGGTGCTGGAC 58.850 52.381 0.00 0.00 40.48 4.02
3641 3658 0.247460 TGCTGGACGAGGATGAACAG 59.753 55.000 0.00 0.00 0.00 3.16
3644 3661 2.886081 CTGGACGAGGATGAACAGAAG 58.114 52.381 0.00 0.00 0.00 2.85
3650 3667 2.353109 CGAGGATGAACAGAAGCAGACA 60.353 50.000 0.00 0.00 0.00 3.41
3651 3668 3.260740 GAGGATGAACAGAAGCAGACAG 58.739 50.000 0.00 0.00 0.00 3.51
3652 3669 2.636893 AGGATGAACAGAAGCAGACAGT 59.363 45.455 0.00 0.00 0.00 3.55
3653 3670 2.999355 GGATGAACAGAAGCAGACAGTC 59.001 50.000 0.00 0.00 0.00 3.51
3654 3671 2.140065 TGAACAGAAGCAGACAGTCG 57.860 50.000 0.00 0.00 0.00 4.18
3655 3672 1.269778 TGAACAGAAGCAGACAGTCGG 60.270 52.381 0.00 0.00 0.00 4.79
3656 3673 0.753262 AACAGAAGCAGACAGTCGGT 59.247 50.000 2.45 0.00 0.00 4.69
3657 3674 0.753262 ACAGAAGCAGACAGTCGGTT 59.247 50.000 2.45 6.12 0.00 4.44
3658 3675 1.961394 ACAGAAGCAGACAGTCGGTTA 59.039 47.619 2.45 0.00 0.00 2.85
3659 3676 2.029828 ACAGAAGCAGACAGTCGGTTAG 60.030 50.000 2.45 5.53 0.00 2.34
3660 3677 1.546476 AGAAGCAGACAGTCGGTTAGG 59.454 52.381 2.45 0.00 0.00 2.69
3661 3678 0.608640 AAGCAGACAGTCGGTTAGGG 59.391 55.000 2.45 0.00 0.00 3.53
3662 3679 0.251653 AGCAGACAGTCGGTTAGGGA 60.252 55.000 2.45 0.00 0.00 4.20
3745 3762 8.620416 TGACATTCATGCATAATGTAGTAAACC 58.380 33.333 23.00 14.68 45.24 3.27
3748 3765 6.618287 TCATGCATAATGTAGTAAACCTGC 57.382 37.500 0.00 0.00 37.56 4.85
3766 3783 1.238938 CAGCCCCTATCCCCCACTA 59.761 63.158 0.00 0.00 0.00 2.74
3781 3802 4.263462 CCCCCACTATATGCTCTATTTGCA 60.263 45.833 0.00 0.00 44.95 4.08
3782 3803 5.316167 CCCCACTATATGCTCTATTTGCAA 58.684 41.667 0.00 0.00 44.01 4.08
3789 3810 9.177608 ACTATATGCTCTATTTGCAAGTTTTGA 57.822 29.630 0.00 0.00 44.01 2.69
3798 3819 6.990341 ATTTGCAAGTTTTGAGCTCTTTTT 57.010 29.167 16.19 0.00 0.00 1.94
3799 3820 6.407475 TTTGCAAGTTTTGAGCTCTTTTTC 57.593 33.333 16.19 2.10 0.00 2.29
3809 3830 9.642312 GTTTTGAGCTCTTTTTCAATGAAAATC 57.358 29.630 20.15 14.73 40.50 2.17
3817 3838 4.888326 TTTCAATGAAAATCCAGGTGGG 57.112 40.909 5.87 0.00 35.41 4.61
3847 3868 5.026038 TGGTTAATCAGGTGGTATTACCG 57.974 43.478 8.32 0.00 45.56 4.02
3857 3878 6.098552 TCAGGTGGTATTACCGAATGATTGTA 59.901 38.462 8.32 0.00 45.56 2.41
3859 3880 6.764560 AGGTGGTATTACCGAATGATTGTAAC 59.235 38.462 8.32 0.00 45.56 2.50
3892 3914 1.079503 GGAAGGATCGTTGAGTGTGC 58.920 55.000 5.18 0.00 0.00 4.57
3916 3938 5.035443 GTGCATTCAGCTCATTCAGAAATC 58.965 41.667 0.00 0.00 45.94 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.145119 AGTCCTTGTTGTTCCCTTCCC 59.855 52.381 0.00 0.00 0.00 3.97
3 4 2.243736 TCCAAGTCCTTGTTGTTCCCTT 59.756 45.455 6.31 0.00 38.85 3.95
4 5 1.850345 TCCAAGTCCTTGTTGTTCCCT 59.150 47.619 6.31 0.00 38.85 4.20
5 6 2.230660 CTCCAAGTCCTTGTTGTTCCC 58.769 52.381 6.31 0.00 38.85 3.97
6 7 2.158667 TCCTCCAAGTCCTTGTTGTTCC 60.159 50.000 6.31 0.00 38.85 3.62
8 9 2.745152 CGTCCTCCAAGTCCTTGTTGTT 60.745 50.000 6.31 0.00 38.85 2.83
9 10 1.202651 CGTCCTCCAAGTCCTTGTTGT 60.203 52.381 6.31 0.00 38.85 3.32
10 11 1.512926 CGTCCTCCAAGTCCTTGTTG 58.487 55.000 6.31 0.00 38.85 3.33
11 12 0.396811 CCGTCCTCCAAGTCCTTGTT 59.603 55.000 6.31 0.00 38.85 2.83
12 13 1.481056 CCCGTCCTCCAAGTCCTTGT 61.481 60.000 6.31 0.00 38.85 3.16
13 14 1.296715 CCCGTCCTCCAAGTCCTTG 59.703 63.158 0.00 0.00 40.13 3.61
14 15 1.152096 ACCCGTCCTCCAAGTCCTT 60.152 57.895 0.00 0.00 0.00 3.36
15 16 1.913762 CACCCGTCCTCCAAGTCCT 60.914 63.158 0.00 0.00 0.00 3.85
16 17 2.663196 CACCCGTCCTCCAAGTCC 59.337 66.667 0.00 0.00 0.00 3.85
17 18 2.047179 GCACCCGTCCTCCAAGTC 60.047 66.667 0.00 0.00 0.00 3.01
18 19 3.637273 GGCACCCGTCCTCCAAGT 61.637 66.667 0.00 0.00 0.00 3.16
19 20 4.760047 CGGCACCCGTCCTCCAAG 62.760 72.222 0.00 0.00 42.73 3.61
29 30 1.436983 CTAAATCTTCGCCGGCACCC 61.437 60.000 28.98 0.00 0.00 4.61
30 31 0.461339 TCTAAATCTTCGCCGGCACC 60.461 55.000 28.98 0.00 0.00 5.01
31 32 0.651031 GTCTAAATCTTCGCCGGCAC 59.349 55.000 28.98 9.02 0.00 5.01
32 33 0.535335 AGTCTAAATCTTCGCCGGCA 59.465 50.000 28.98 11.20 0.00 5.69
33 34 2.395654 CTAGTCTAAATCTTCGCCGGC 58.604 52.381 19.07 19.07 0.00 6.13
34 35 2.361438 ACCTAGTCTAAATCTTCGCCGG 59.639 50.000 0.00 0.00 0.00 6.13
35 36 3.712091 ACCTAGTCTAAATCTTCGCCG 57.288 47.619 0.00 0.00 0.00 6.46
36 37 5.509332 CCCTAACCTAGTCTAAATCTTCGCC 60.509 48.000 0.00 0.00 0.00 5.54
37 38 5.068855 ACCCTAACCTAGTCTAAATCTTCGC 59.931 44.000 0.00 0.00 0.00 4.70
38 39 6.712179 ACCCTAACCTAGTCTAAATCTTCG 57.288 41.667 0.00 0.00 0.00 3.79
39 40 7.201835 CGAACCCTAACCTAGTCTAAATCTTC 58.798 42.308 0.00 0.00 0.00 2.87
40 41 6.097981 CCGAACCCTAACCTAGTCTAAATCTT 59.902 42.308 0.00 0.00 0.00 2.40
41 42 5.597594 CCGAACCCTAACCTAGTCTAAATCT 59.402 44.000 0.00 0.00 0.00 2.40
42 43 5.595952 TCCGAACCCTAACCTAGTCTAAATC 59.404 44.000 0.00 0.00 0.00 2.17
43 44 5.362143 GTCCGAACCCTAACCTAGTCTAAAT 59.638 44.000 0.00 0.00 0.00 1.40
44 45 4.706962 GTCCGAACCCTAACCTAGTCTAAA 59.293 45.833 0.00 0.00 0.00 1.85
45 46 4.273318 GTCCGAACCCTAACCTAGTCTAA 58.727 47.826 0.00 0.00 0.00 2.10
46 47 3.682718 CGTCCGAACCCTAACCTAGTCTA 60.683 52.174 0.00 0.00 0.00 2.59
47 48 2.732763 GTCCGAACCCTAACCTAGTCT 58.267 52.381 0.00 0.00 0.00 3.24
48 49 1.403323 CGTCCGAACCCTAACCTAGTC 59.597 57.143 0.00 0.00 0.00 2.59
49 50 1.272147 ACGTCCGAACCCTAACCTAGT 60.272 52.381 0.00 0.00 0.00 2.57
50 51 1.467920 ACGTCCGAACCCTAACCTAG 58.532 55.000 0.00 0.00 0.00 3.02
51 52 1.923356 AACGTCCGAACCCTAACCTA 58.077 50.000 0.00 0.00 0.00 3.08
52 53 1.051008 AAACGTCCGAACCCTAACCT 58.949 50.000 0.00 0.00 0.00 3.50
53 54 1.532437 CAAAACGTCCGAACCCTAACC 59.468 52.381 0.00 0.00 0.00 2.85
54 55 2.212652 ACAAAACGTCCGAACCCTAAC 58.787 47.619 0.00 0.00 0.00 2.34
55 56 2.618442 ACAAAACGTCCGAACCCTAA 57.382 45.000 0.00 0.00 0.00 2.69
56 57 2.618442 AACAAAACGTCCGAACCCTA 57.382 45.000 0.00 0.00 0.00 3.53
57 58 1.753930 AAACAAAACGTCCGAACCCT 58.246 45.000 0.00 0.00 0.00 4.34
58 59 3.548616 CCTTAAACAAAACGTCCGAACCC 60.549 47.826 0.00 0.00 0.00 4.11
59 60 3.312146 TCCTTAAACAAAACGTCCGAACC 59.688 43.478 0.00 0.00 0.00 3.62
60 61 4.534794 TCCTTAAACAAAACGTCCGAAC 57.465 40.909 0.00 0.00 0.00 3.95
61 62 5.557891 TTTCCTTAAACAAAACGTCCGAA 57.442 34.783 0.00 0.00 0.00 4.30
62 63 5.754543 ATTTCCTTAAACAAAACGTCCGA 57.245 34.783 0.00 0.00 0.00 4.55
63 64 7.269724 GTCATATTTCCTTAAACAAAACGTCCG 59.730 37.037 0.00 0.00 0.00 4.79
64 65 8.077386 TGTCATATTTCCTTAAACAAAACGTCC 58.923 33.333 0.00 0.00 0.00 4.79
65 66 9.453325 TTGTCATATTTCCTTAAACAAAACGTC 57.547 29.630 0.00 0.00 0.00 4.34
66 67 9.804758 TTTGTCATATTTCCTTAAACAAAACGT 57.195 25.926 0.00 0.00 0.00 3.99
75 76 9.781834 CGCTACATTTTTGTCATATTTCCTTAA 57.218 29.630 0.00 0.00 0.00 1.85
76 77 9.168451 TCGCTACATTTTTGTCATATTTCCTTA 57.832 29.630 0.00 0.00 0.00 2.69
77 78 8.050778 TCGCTACATTTTTGTCATATTTCCTT 57.949 30.769 0.00 0.00 0.00 3.36
78 79 7.624360 TCGCTACATTTTTGTCATATTTCCT 57.376 32.000 0.00 0.00 0.00 3.36
79 80 8.745837 CATTCGCTACATTTTTGTCATATTTCC 58.254 33.333 0.00 0.00 0.00 3.13
80 81 9.289303 ACATTCGCTACATTTTTGTCATATTTC 57.711 29.630 0.00 0.00 0.00 2.17
81 82 9.075519 CACATTCGCTACATTTTTGTCATATTT 57.924 29.630 0.00 0.00 0.00 1.40
82 83 7.220683 GCACATTCGCTACATTTTTGTCATATT 59.779 33.333 0.00 0.00 0.00 1.28
83 84 6.692681 GCACATTCGCTACATTTTTGTCATAT 59.307 34.615 0.00 0.00 0.00 1.78
84 85 6.027131 GCACATTCGCTACATTTTTGTCATA 58.973 36.000 0.00 0.00 0.00 2.15
85 86 4.858692 GCACATTCGCTACATTTTTGTCAT 59.141 37.500 0.00 0.00 0.00 3.06
86 87 4.023279 AGCACATTCGCTACATTTTTGTCA 60.023 37.500 0.00 0.00 41.55 3.58
87 88 4.475944 AGCACATTCGCTACATTTTTGTC 58.524 39.130 0.00 0.00 41.55 3.18
88 89 4.475944 GAGCACATTCGCTACATTTTTGT 58.524 39.130 0.00 0.00 44.01 2.83
89 90 3.853671 GGAGCACATTCGCTACATTTTTG 59.146 43.478 0.00 0.00 44.01 2.44
90 91 3.426159 CGGAGCACATTCGCTACATTTTT 60.426 43.478 0.00 0.00 43.63 1.94
91 92 2.095853 CGGAGCACATTCGCTACATTTT 59.904 45.455 0.00 0.00 43.63 1.82
92 93 1.665679 CGGAGCACATTCGCTACATTT 59.334 47.619 0.00 0.00 43.63 2.32
93 94 1.290203 CGGAGCACATTCGCTACATT 58.710 50.000 0.00 0.00 43.63 2.71
94 95 0.530650 CCGGAGCACATTCGCTACAT 60.531 55.000 0.00 0.00 43.63 2.29
95 96 1.153647 CCGGAGCACATTCGCTACA 60.154 57.895 0.00 0.00 43.63 2.74
96 97 0.739813 AACCGGAGCACATTCGCTAC 60.740 55.000 9.46 0.00 44.01 3.58
97 98 0.036765 AAACCGGAGCACATTCGCTA 60.037 50.000 9.46 0.00 44.01 4.26
99 100 0.800012 TTAAACCGGAGCACATTCGC 59.200 50.000 9.46 0.00 0.00 4.70
100 101 3.126171 TCATTTAAACCGGAGCACATTCG 59.874 43.478 9.46 0.00 0.00 3.34
101 102 4.695217 TCATTTAAACCGGAGCACATTC 57.305 40.909 9.46 0.00 0.00 2.67
102 103 5.461032 TTTCATTTAAACCGGAGCACATT 57.539 34.783 9.46 0.00 0.00 2.71
103 104 5.461032 TTTTCATTTAAACCGGAGCACAT 57.539 34.783 9.46 0.00 0.00 3.21
104 105 4.920640 TTTTCATTTAAACCGGAGCACA 57.079 36.364 9.46 0.00 0.00 4.57
105 106 7.222031 GGATAATTTTCATTTAAACCGGAGCAC 59.778 37.037 9.46 0.00 0.00 4.40
106 107 7.123547 AGGATAATTTTCATTTAAACCGGAGCA 59.876 33.333 9.46 0.00 0.00 4.26
107 108 7.435192 CAGGATAATTTTCATTTAAACCGGAGC 59.565 37.037 9.46 0.00 0.00 4.70
108 109 7.920682 CCAGGATAATTTTCATTTAAACCGGAG 59.079 37.037 9.46 0.00 0.00 4.63
109 110 7.397761 ACCAGGATAATTTTCATTTAAACCGGA 59.602 33.333 9.46 0.00 0.00 5.14
110 111 7.552459 ACCAGGATAATTTTCATTTAAACCGG 58.448 34.615 0.00 0.00 0.00 5.28
111 112 8.996024 AACCAGGATAATTTTCATTTAAACCG 57.004 30.769 0.00 0.00 0.00 4.44
124 125 8.405531 CGACATTTTCATGTAACCAGGATAATT 58.594 33.333 0.00 0.00 44.22 1.40
125 126 7.013274 CCGACATTTTCATGTAACCAGGATAAT 59.987 37.037 0.00 0.00 44.22 1.28
126 127 6.317642 CCGACATTTTCATGTAACCAGGATAA 59.682 38.462 0.00 0.00 44.22 1.75
127 128 5.820423 CCGACATTTTCATGTAACCAGGATA 59.180 40.000 0.00 0.00 44.22 2.59
128 129 4.640201 CCGACATTTTCATGTAACCAGGAT 59.360 41.667 0.00 0.00 44.22 3.24
129 130 4.006989 CCGACATTTTCATGTAACCAGGA 58.993 43.478 0.00 0.00 44.22 3.86
130 131 3.756434 ACCGACATTTTCATGTAACCAGG 59.244 43.478 0.00 0.00 44.22 4.45
131 132 5.371115 AACCGACATTTTCATGTAACCAG 57.629 39.130 0.00 0.00 44.22 4.00
132 133 5.508153 CCAAACCGACATTTTCATGTAACCA 60.508 40.000 0.00 0.00 44.22 3.67
133 134 4.920927 CCAAACCGACATTTTCATGTAACC 59.079 41.667 0.00 0.00 44.22 2.85
134 135 5.525199 ACCAAACCGACATTTTCATGTAAC 58.475 37.500 0.00 0.00 44.22 2.50
135 136 5.278561 GGACCAAACCGACATTTTCATGTAA 60.279 40.000 0.00 0.00 44.22 2.41
136 137 4.216687 GGACCAAACCGACATTTTCATGTA 59.783 41.667 0.00 0.00 44.22 2.29
138 139 3.005261 TGGACCAAACCGACATTTTCATG 59.995 43.478 0.00 0.00 36.34 3.07
139 140 3.226777 TGGACCAAACCGACATTTTCAT 58.773 40.909 0.00 0.00 0.00 2.57
140 141 2.656002 TGGACCAAACCGACATTTTCA 58.344 42.857 0.00 0.00 0.00 2.69
141 142 3.719173 TTGGACCAAACCGACATTTTC 57.281 42.857 3.84 0.00 0.00 2.29
142 143 4.681074 AATTGGACCAAACCGACATTTT 57.319 36.364 11.82 0.00 0.00 1.82
143 144 4.681074 AAATTGGACCAAACCGACATTT 57.319 36.364 11.82 2.43 0.00 2.32
144 145 4.830600 AGTAAATTGGACCAAACCGACATT 59.169 37.500 11.82 0.00 0.00 2.71
145 146 4.403734 AGTAAATTGGACCAAACCGACAT 58.596 39.130 11.82 0.00 0.00 3.06
146 147 3.822940 AGTAAATTGGACCAAACCGACA 58.177 40.909 11.82 0.00 0.00 4.35
147 148 4.841443 AAGTAAATTGGACCAAACCGAC 57.159 40.909 11.82 7.34 0.00 4.79
148 149 6.956202 TTAAAGTAAATTGGACCAAACCGA 57.044 33.333 11.82 0.00 0.00 4.69
149 150 8.491950 CATTTTAAAGTAAATTGGACCAAACCG 58.508 33.333 11.82 0.00 0.00 4.44
150 151 9.332502 ACATTTTAAAGTAAATTGGACCAAACC 57.667 29.630 11.82 0.00 34.84 3.27
165 166 9.374838 CAACCGTACCTCTATACATTTTAAAGT 57.625 33.333 0.00 0.00 0.00 2.66
166 167 8.823818 CCAACCGTACCTCTATACATTTTAAAG 58.176 37.037 0.00 0.00 0.00 1.85
167 168 8.538701 TCCAACCGTACCTCTATACATTTTAAA 58.461 33.333 0.00 0.00 0.00 1.52
168 169 8.076910 TCCAACCGTACCTCTATACATTTTAA 57.923 34.615 0.00 0.00 0.00 1.52
169 170 7.658525 TCCAACCGTACCTCTATACATTTTA 57.341 36.000 0.00 0.00 0.00 1.52
170 171 6.549433 TCCAACCGTACCTCTATACATTTT 57.451 37.500 0.00 0.00 0.00 1.82
171 172 6.325545 TCATCCAACCGTACCTCTATACATTT 59.674 38.462 0.00 0.00 0.00 2.32
172 173 5.836898 TCATCCAACCGTACCTCTATACATT 59.163 40.000 0.00 0.00 0.00 2.71
173 174 5.243283 GTCATCCAACCGTACCTCTATACAT 59.757 44.000 0.00 0.00 0.00 2.29
174 175 4.581824 GTCATCCAACCGTACCTCTATACA 59.418 45.833 0.00 0.00 0.00 2.29
175 176 4.022503 GGTCATCCAACCGTACCTCTATAC 60.023 50.000 0.00 0.00 0.00 1.47
176 177 4.147321 GGTCATCCAACCGTACCTCTATA 58.853 47.826 0.00 0.00 0.00 1.31
177 178 2.963782 GGTCATCCAACCGTACCTCTAT 59.036 50.000 0.00 0.00 0.00 1.98
178 179 2.381911 GGTCATCCAACCGTACCTCTA 58.618 52.381 0.00 0.00 0.00 2.43
179 180 1.192428 GGTCATCCAACCGTACCTCT 58.808 55.000 0.00 0.00 0.00 3.69
180 181 3.754766 GGTCATCCAACCGTACCTC 57.245 57.895 0.00 0.00 0.00 3.85
187 188 0.539986 TAGAAGCCGGTCATCCAACC 59.460 55.000 1.90 0.00 35.86 3.77
188 189 2.622064 ATAGAAGCCGGTCATCCAAC 57.378 50.000 1.90 0.00 0.00 3.77
189 190 3.260884 GGATATAGAAGCCGGTCATCCAA 59.739 47.826 1.90 0.00 32.47 3.53
190 191 2.832129 GGATATAGAAGCCGGTCATCCA 59.168 50.000 1.90 0.00 32.47 3.41
191 192 2.832129 TGGATATAGAAGCCGGTCATCC 59.168 50.000 1.90 3.28 0.00 3.51
192 193 3.764434 TCTGGATATAGAAGCCGGTCATC 59.236 47.826 1.90 0.00 0.00 2.92
193 194 3.511934 GTCTGGATATAGAAGCCGGTCAT 59.488 47.826 1.90 0.00 0.00 3.06
194 195 2.891580 GTCTGGATATAGAAGCCGGTCA 59.108 50.000 1.90 0.00 0.00 4.02
195 196 3.158676 AGTCTGGATATAGAAGCCGGTC 58.841 50.000 1.90 0.00 0.00 4.79
196 197 3.158676 GAGTCTGGATATAGAAGCCGGT 58.841 50.000 1.90 0.00 0.00 5.28
197 198 3.157881 TGAGTCTGGATATAGAAGCCGG 58.842 50.000 0.00 0.00 0.00 6.13
198 199 5.398603 AATGAGTCTGGATATAGAAGCCG 57.601 43.478 0.00 0.00 0.00 5.52
199 200 5.406649 CGAATGAGTCTGGATATAGAAGCC 58.593 45.833 0.00 0.00 0.00 4.35
200 201 4.862018 GCGAATGAGTCTGGATATAGAAGC 59.138 45.833 0.00 0.00 0.00 3.86
201 202 5.092105 CGCGAATGAGTCTGGATATAGAAG 58.908 45.833 0.00 0.00 0.00 2.85
202 203 4.760204 TCGCGAATGAGTCTGGATATAGAA 59.240 41.667 6.20 0.00 0.00 2.10
203 204 4.324267 TCGCGAATGAGTCTGGATATAGA 58.676 43.478 6.20 0.00 0.00 1.98
204 205 4.686839 TCGCGAATGAGTCTGGATATAG 57.313 45.455 6.20 0.00 0.00 1.31
205 206 4.612939 CGTTCGCGAATGAGTCTGGATATA 60.613 45.833 32.26 0.00 44.71 0.86
206 207 3.643763 GTTCGCGAATGAGTCTGGATAT 58.356 45.455 26.23 0.00 0.00 1.63
207 208 2.540973 CGTTCGCGAATGAGTCTGGATA 60.541 50.000 32.26 0.00 44.71 2.59
208 209 1.799181 CGTTCGCGAATGAGTCTGGAT 60.799 52.381 32.26 0.00 44.71 3.41
209 210 0.456142 CGTTCGCGAATGAGTCTGGA 60.456 55.000 32.26 0.00 44.71 3.86
210 211 1.413767 CCGTTCGCGAATGAGTCTGG 61.414 60.000 36.09 18.15 44.71 3.86
211 212 0.456142 TCCGTTCGCGAATGAGTCTG 60.456 55.000 36.09 21.59 44.71 3.51
212 213 0.456221 ATCCGTTCGCGAATGAGTCT 59.544 50.000 36.09 17.64 44.71 3.24
213 214 0.572590 CATCCGTTCGCGAATGAGTC 59.427 55.000 36.09 17.96 44.71 3.36
214 215 1.421410 GCATCCGTTCGCGAATGAGT 61.421 55.000 36.09 23.00 44.71 3.41
215 216 1.273887 GCATCCGTTCGCGAATGAG 59.726 57.895 36.09 26.24 44.71 2.90
216 217 2.171079 GGCATCCGTTCGCGAATGA 61.171 57.895 36.09 28.30 44.71 2.57
217 218 2.324477 GGCATCCGTTCGCGAATG 59.676 61.111 29.72 29.72 44.71 2.67
218 219 3.261951 CGGCATCCGTTCGCGAAT 61.262 61.111 26.23 5.73 42.73 3.34
228 229 1.129811 CTTAAAACGGACACGGCATCC 59.870 52.381 0.00 0.00 46.48 3.51
229 230 1.129811 CCTTAAAACGGACACGGCATC 59.870 52.381 0.00 0.00 46.48 3.91
230 231 1.161843 CCTTAAAACGGACACGGCAT 58.838 50.000 0.00 0.00 46.48 4.40
231 232 0.106335 TCCTTAAAACGGACACGGCA 59.894 50.000 0.00 0.00 46.48 5.69
232 233 1.395954 GATCCTTAAAACGGACACGGC 59.604 52.381 0.00 0.00 46.48 5.68
233 234 2.671396 CTGATCCTTAAAACGGACACGG 59.329 50.000 0.00 0.00 46.48 4.94
235 236 3.071479 TGCTGATCCTTAAAACGGACAC 58.929 45.455 0.00 0.00 32.41 3.67
236 237 3.410631 TGCTGATCCTTAAAACGGACA 57.589 42.857 0.00 0.00 32.41 4.02
237 238 3.065371 CCATGCTGATCCTTAAAACGGAC 59.935 47.826 0.00 0.00 32.41 4.79
238 239 3.054728 TCCATGCTGATCCTTAAAACGGA 60.055 43.478 0.00 0.00 34.52 4.69
239 240 3.278574 TCCATGCTGATCCTTAAAACGG 58.721 45.455 0.00 0.00 0.00 4.44
240 241 4.191544 TCTCCATGCTGATCCTTAAAACG 58.808 43.478 0.00 0.00 0.00 3.60
241 242 6.311055 GATCTCCATGCTGATCCTTAAAAC 57.689 41.667 12.41 0.00 34.60 2.43
249 250 2.476126 CAGGGATCTCCATGCTGATC 57.524 55.000 14.15 14.15 41.16 2.92
256 257 0.625683 AAGGTGGCAGGGATCTCCAT 60.626 55.000 0.00 0.00 38.24 3.41
257 258 1.229951 AAGGTGGCAGGGATCTCCA 60.230 57.895 0.00 0.00 38.24 3.86
258 259 1.274703 TGAAGGTGGCAGGGATCTCC 61.275 60.000 0.00 0.00 0.00 3.71
259 260 0.842635 ATGAAGGTGGCAGGGATCTC 59.157 55.000 0.00 0.00 0.00 2.75
260 261 0.842635 GATGAAGGTGGCAGGGATCT 59.157 55.000 0.00 0.00 0.00 2.75
261 262 0.548031 TGATGAAGGTGGCAGGGATC 59.452 55.000 0.00 0.00 0.00 3.36
262 263 1.229131 ATGATGAAGGTGGCAGGGAT 58.771 50.000 0.00 0.00 0.00 3.85
263 264 1.002069 AATGATGAAGGTGGCAGGGA 58.998 50.000 0.00 0.00 0.00 4.20
264 265 1.108776 CAATGATGAAGGTGGCAGGG 58.891 55.000 0.00 0.00 0.00 4.45
265 266 1.475280 CACAATGATGAAGGTGGCAGG 59.525 52.381 0.00 0.00 0.00 4.85
266 267 2.439409 TCACAATGATGAAGGTGGCAG 58.561 47.619 0.00 0.00 32.29 4.85
267 268 2.583024 TCACAATGATGAAGGTGGCA 57.417 45.000 0.00 0.00 32.29 4.92
274 275 4.323417 AGGCGTAACTTCACAATGATGAA 58.677 39.130 0.00 0.00 37.08 2.57
275 276 3.937814 AGGCGTAACTTCACAATGATGA 58.062 40.909 0.00 0.00 0.00 2.92
276 277 4.651994 GAAGGCGTAACTTCACAATGATG 58.348 43.478 10.41 0.00 44.82 3.07
277 278 3.370978 CGAAGGCGTAACTTCACAATGAT 59.629 43.478 14.04 0.00 45.54 2.45
278 279 2.734606 CGAAGGCGTAACTTCACAATGA 59.265 45.455 14.04 0.00 45.54 2.57
279 280 3.103793 CGAAGGCGTAACTTCACAATG 57.896 47.619 14.04 0.00 45.54 2.82
292 293 3.467119 CACGAACGGACGAAGGCG 61.467 66.667 10.16 0.00 44.79 5.52
293 294 1.012486 AATCACGAACGGACGAAGGC 61.012 55.000 10.16 0.00 37.03 4.35
294 295 1.425412 AAATCACGAACGGACGAAGG 58.575 50.000 10.16 0.85 37.03 3.46
295 296 3.515071 AAAAATCACGAACGGACGAAG 57.485 42.857 10.16 3.28 37.03 3.79
313 314 1.848652 TTGTTCCGTGGGGACAAAAA 58.151 45.000 6.04 0.00 43.74 1.94
314 315 1.683917 CATTGTTCCGTGGGGACAAAA 59.316 47.619 12.26 0.00 43.74 2.44
315 316 1.323412 CATTGTTCCGTGGGGACAAA 58.677 50.000 12.26 0.00 43.74 2.83
316 317 0.183971 ACATTGTTCCGTGGGGACAA 59.816 50.000 10.76 10.76 43.74 3.18
317 318 0.536233 CACATTGTTCCGTGGGGACA 60.536 55.000 0.00 0.00 43.74 4.02
318 319 0.536460 ACACATTGTTCCGTGGGGAC 60.536 55.000 0.00 0.00 43.74 4.46
319 320 1.057471 TACACATTGTTCCGTGGGGA 58.943 50.000 0.00 0.00 41.83 4.81
320 321 2.122783 ATACACATTGTTCCGTGGGG 57.877 50.000 0.00 0.00 37.45 4.96
321 322 4.196193 ACATATACACATTGTTCCGTGGG 58.804 43.478 0.00 0.00 37.45 4.61
322 323 5.116180 AGACATATACACATTGTTCCGTGG 58.884 41.667 0.00 0.00 37.45 4.94
323 324 5.234329 GGAGACATATACACATTGTTCCGTG 59.766 44.000 0.00 0.00 39.10 4.94
324 325 5.128827 AGGAGACATATACACATTGTTCCGT 59.871 40.000 0.00 0.00 31.57 4.69
325 326 5.601662 AGGAGACATATACACATTGTTCCG 58.398 41.667 0.00 0.00 31.57 4.30
326 327 7.865706 AAAGGAGACATATACACATTGTTCC 57.134 36.000 0.00 0.00 0.00 3.62
331 332 9.698309 CGAGATTAAAGGAGACATATACACATT 57.302 33.333 0.00 0.00 0.00 2.71
332 333 8.861086 ACGAGATTAAAGGAGACATATACACAT 58.139 33.333 0.00 0.00 0.00 3.21
333 334 8.234136 ACGAGATTAAAGGAGACATATACACA 57.766 34.615 0.00 0.00 0.00 3.72
334 335 9.530633 AAACGAGATTAAAGGAGACATATACAC 57.469 33.333 0.00 0.00 0.00 2.90
349 350 9.188588 CCACGCTCTTATATAAAACGAGATTAA 57.811 33.333 14.72 0.00 0.00 1.40
350 351 7.327761 GCCACGCTCTTATATAAAACGAGATTA 59.672 37.037 14.72 0.00 0.00 1.75
351 352 6.145696 GCCACGCTCTTATATAAAACGAGATT 59.854 38.462 14.72 0.80 0.00 2.40
352 353 5.634020 GCCACGCTCTTATATAAAACGAGAT 59.366 40.000 14.72 2.02 0.00 2.75
353 354 4.980434 GCCACGCTCTTATATAAAACGAGA 59.020 41.667 14.72 1.07 0.00 4.04
354 355 4.982916 AGCCACGCTCTTATATAAAACGAG 59.017 41.667 14.72 10.55 30.62 4.18
355 356 4.940463 AGCCACGCTCTTATATAAAACGA 58.060 39.130 14.72 1.92 30.62 3.85
356 357 6.147581 TCTAGCCACGCTCTTATATAAAACG 58.852 40.000 8.92 8.92 40.44 3.60
357 358 8.030106 AGATCTAGCCACGCTCTTATATAAAAC 58.970 37.037 0.00 0.00 40.44 2.43
358 359 8.123639 AGATCTAGCCACGCTCTTATATAAAA 57.876 34.615 0.00 0.00 40.44 1.52
359 360 7.704578 AGATCTAGCCACGCTCTTATATAAA 57.295 36.000 0.00 0.00 40.44 1.40
360 361 7.704578 AAGATCTAGCCACGCTCTTATATAA 57.295 36.000 0.00 0.00 40.44 0.98
361 362 8.803397 TTAAGATCTAGCCACGCTCTTATATA 57.197 34.615 0.00 0.00 40.44 0.86
362 363 7.704578 TTAAGATCTAGCCACGCTCTTATAT 57.295 36.000 0.00 0.00 40.44 0.86
363 364 7.393515 TGATTAAGATCTAGCCACGCTCTTATA 59.606 37.037 0.00 0.00 40.44 0.98
364 365 6.209589 TGATTAAGATCTAGCCACGCTCTTAT 59.790 38.462 0.00 0.00 40.44 1.73
365 366 5.535030 TGATTAAGATCTAGCCACGCTCTTA 59.465 40.000 0.00 0.00 40.44 2.10
366 367 4.342378 TGATTAAGATCTAGCCACGCTCTT 59.658 41.667 0.00 0.00 40.44 2.85
367 368 3.891977 TGATTAAGATCTAGCCACGCTCT 59.108 43.478 0.00 0.00 40.44 4.09
368 369 4.244425 TGATTAAGATCTAGCCACGCTC 57.756 45.455 0.00 0.00 40.44 5.03
369 370 4.626042 CTTGATTAAGATCTAGCCACGCT 58.374 43.478 0.00 0.00 38.19 5.07
370 371 4.981389 CTTGATTAAGATCTAGCCACGC 57.019 45.455 0.00 0.00 35.92 5.34
376 377 6.910972 TGTTACGTCGCTTGATTAAGATCTAG 59.089 38.462 0.58 0.00 37.93 2.43
377 378 6.788243 TGTTACGTCGCTTGATTAAGATCTA 58.212 36.000 0.58 0.00 35.92 1.98
378 379 5.647589 TGTTACGTCGCTTGATTAAGATCT 58.352 37.500 0.58 0.00 35.92 2.75
379 380 5.944049 TGTTACGTCGCTTGATTAAGATC 57.056 39.130 0.58 0.00 35.92 2.75
380 381 9.343103 CTATATGTTACGTCGCTTGATTAAGAT 57.657 33.333 0.58 0.00 35.92 2.40
381 382 8.562052 TCTATATGTTACGTCGCTTGATTAAGA 58.438 33.333 0.58 0.00 35.92 2.10
382 383 8.723777 TCTATATGTTACGTCGCTTGATTAAG 57.276 34.615 0.00 0.00 36.97 1.85
383 384 9.518906 TTTCTATATGTTACGTCGCTTGATTAA 57.481 29.630 0.00 0.00 0.00 1.40
384 385 9.518906 TTTTCTATATGTTACGTCGCTTGATTA 57.481 29.630 0.00 0.00 0.00 1.75
385 386 7.997107 TTTCTATATGTTACGTCGCTTGATT 57.003 32.000 0.00 0.00 0.00 2.57
386 387 7.997107 TTTTCTATATGTTACGTCGCTTGAT 57.003 32.000 0.00 0.00 0.00 2.57
387 388 7.815398 TTTTTCTATATGTTACGTCGCTTGA 57.185 32.000 0.00 0.00 0.00 3.02
425 426 4.688419 CCACAGCAAACGCAGGCG 62.688 66.667 12.71 12.71 46.03 5.52
426 427 4.347453 CCCACAGCAAACGCAGGC 62.347 66.667 0.00 0.00 0.00 4.85
427 428 2.906897 ACCCACAGCAAACGCAGG 60.907 61.111 0.00 0.00 0.00 4.85
428 429 2.332514 CACCCACAGCAAACGCAG 59.667 61.111 0.00 0.00 0.00 5.18
429 430 3.898509 GCACCCACAGCAAACGCA 61.899 61.111 0.00 0.00 0.00 5.24
430 431 3.829272 CTGCACCCACAGCAAACGC 62.829 63.158 0.00 0.00 42.17 4.84
431 432 2.332514 CTGCACCCACAGCAAACG 59.667 61.111 0.00 0.00 42.17 3.60
444 445 3.932580 ATTTCGCTCCGTCGCTGCA 62.933 57.895 0.00 0.00 0.00 4.41
445 446 3.144120 GATTTCGCTCCGTCGCTGC 62.144 63.158 0.00 0.00 0.00 5.25
446 447 2.517450 GGATTTCGCTCCGTCGCTG 61.517 63.158 0.00 0.00 0.00 5.18
447 448 2.202756 GGATTTCGCTCCGTCGCT 60.203 61.111 0.00 0.00 0.00 4.93
448 449 2.202756 AGGATTTCGCTCCGTCGC 60.203 61.111 0.00 0.00 40.46 5.19
449 450 1.939785 CGAGGATTTCGCTCCGTCG 60.940 63.158 0.00 0.00 43.22 5.12
450 451 3.999051 CGAGGATTTCGCTCCGTC 58.001 61.111 0.00 0.00 43.22 4.79
460 461 2.181021 GTCGCCACGTCGAGGATT 59.819 61.111 13.31 0.00 39.34 3.01
551 552 5.999205 CAGGAGAACTGGCTGATCTATAT 57.001 43.478 4.20 0.00 43.70 0.86
570 574 2.306341 ACGATGCTTGATCAGACAGG 57.694 50.000 0.00 0.00 0.00 4.00
574 578 5.846203 TGATGATAACGATGCTTGATCAGA 58.154 37.500 0.00 0.00 30.49 3.27
696 702 1.148157 CTTGAGGCGCCGTACTGATG 61.148 60.000 23.20 3.35 0.00 3.07
762 770 4.261994 GCTCTAGCGGATCTCTCATTTCTT 60.262 45.833 0.00 0.00 0.00 2.52
803 811 4.459089 GACGCAGGAGGAGTGGCC 62.459 72.222 0.00 0.00 0.00 5.36
804 812 3.363844 GAGACGCAGGAGGAGTGGC 62.364 68.421 0.00 0.00 0.00 5.01
805 813 2.888863 GAGACGCAGGAGGAGTGG 59.111 66.667 0.00 0.00 0.00 4.00
806 814 2.487428 CGAGACGCAGGAGGAGTG 59.513 66.667 0.00 0.00 0.00 3.51
807 815 2.752238 CCGAGACGCAGGAGGAGT 60.752 66.667 0.00 0.00 0.00 3.85
808 816 2.888464 TACCCGAGACGCAGGAGGAG 62.888 65.000 0.00 0.00 0.00 3.69
809 817 2.888464 CTACCCGAGACGCAGGAGGA 62.888 65.000 0.00 0.00 0.00 3.71
810 818 2.439701 TACCCGAGACGCAGGAGG 60.440 66.667 0.00 0.00 0.00 4.30
823 831 2.897969 TCCAGTTTCAGTCTGACTACCC 59.102 50.000 10.47 0.00 35.20 3.69
825 833 5.047660 AGTGATCCAGTTTCAGTCTGACTAC 60.048 44.000 10.47 5.56 35.20 2.73
936 944 0.029035 CGAACCGAATCGACCGATCT 59.971 55.000 3.36 0.00 45.48 2.75
944 952 0.515564 AAAAGGTGCGAACCGAATCG 59.484 50.000 7.01 0.00 45.41 3.34
955 963 1.725973 GAGCGCGAACAAAAGGTGC 60.726 57.895 12.10 0.00 37.45 5.01
1417 1425 3.311110 AGCCACATCACCGACGGT 61.311 61.111 15.37 15.37 35.62 4.83
1434 1442 2.747686 GAGTTGAGTTCCCCGGCA 59.252 61.111 0.00 0.00 0.00 5.69
1669 1677 4.320456 CGAGGATGCGGGGGATGG 62.320 72.222 0.00 0.00 0.00 3.51
1746 1754 1.152922 GGAGACGAGGAGGACGGAT 60.153 63.158 0.00 0.00 34.93 4.18
2313 2327 1.874129 TGATGTCCCGGTGGTAGATT 58.126 50.000 0.00 0.00 0.00 2.40
2490 2504 1.303799 TGTACACGTCGCTCCTCTCC 61.304 60.000 0.00 0.00 0.00 3.71
2685 2699 1.599047 CACGAACCTCTCCATGGCT 59.401 57.895 6.96 0.00 0.00 4.75
2764 2778 1.198094 TCCCCGTCCAGCATTCTCAA 61.198 55.000 0.00 0.00 0.00 3.02
2769 2783 1.077501 CATGTCCCCGTCCAGCATT 60.078 57.895 0.00 0.00 0.00 3.56
3046 3060 9.000486 TCGTACACAATCCATTTATACAACAAA 58.000 29.630 0.00 0.00 0.00 2.83
3071 3085 5.460419 CGGTATTTCAGCAGAAGATAGTGTC 59.540 44.000 0.00 0.00 34.71 3.67
3075 3089 6.925718 TCATTCGGTATTTCAGCAGAAGATAG 59.074 38.462 0.00 0.00 34.71 2.08
3082 3096 5.295431 TGTTTCATTCGGTATTTCAGCAG 57.705 39.130 0.00 0.00 0.00 4.24
3169 3184 5.121611 CGGTGAATAGTTTGTAATGACAGCA 59.878 40.000 0.00 0.00 36.76 4.41
3170 3185 5.121768 ACGGTGAATAGTTTGTAATGACAGC 59.878 40.000 0.00 0.00 36.76 4.40
3171 3186 6.183360 GGACGGTGAATAGTTTGTAATGACAG 60.183 42.308 0.00 0.00 36.76 3.51
3202 3217 1.197721 GTTGTTTCCTGATCACCGCAG 59.802 52.381 0.00 0.00 0.00 5.18
3281 3297 3.164269 CCTGCCGGTCTGCCCTAT 61.164 66.667 1.90 0.00 0.00 2.57
3310 3327 3.114647 CTCTAGAAGTCGCGCGGCT 62.115 63.158 34.10 34.10 0.00 5.52
3331 3348 1.755384 TGGTGTGCCAATACGGTCA 59.245 52.632 0.00 0.00 42.83 4.02
3342 3359 3.535561 ACATAGTAGCTTGATGGTGTGC 58.464 45.455 0.00 0.00 0.00 4.57
3347 3364 9.494271 AACATGTTATACATAGTAGCTTGATGG 57.506 33.333 9.97 0.00 36.53 3.51
3361 3378 9.018582 TGGATGAACAATTGAACATGTTATACA 57.981 29.630 11.95 2.42 39.73 2.29
3401 3418 4.321899 GCATTTTGCCAGTTGTATCCTTCA 60.322 41.667 0.00 0.00 37.42 3.02
3629 3646 2.266554 GTCTGCTTCTGTTCATCCTCG 58.733 52.381 0.00 0.00 0.00 4.63
3641 3658 1.404315 CCCTAACCGACTGTCTGCTTC 60.404 57.143 6.21 0.00 0.00 3.86
3644 3661 0.606604 TTCCCTAACCGACTGTCTGC 59.393 55.000 6.21 0.00 0.00 4.26
3650 3667 0.903236 GAAGGCTTCCCTAACCGACT 59.097 55.000 16.50 0.00 41.90 4.18
3651 3668 0.611714 TGAAGGCTTCCCTAACCGAC 59.388 55.000 23.68 0.00 41.90 4.79
3652 3669 0.902531 CTGAAGGCTTCCCTAACCGA 59.097 55.000 23.68 2.25 41.90 4.69
3653 3670 0.744771 GCTGAAGGCTTCCCTAACCG 60.745 60.000 23.68 5.43 41.90 4.44
3654 3671 0.744771 CGCTGAAGGCTTCCCTAACC 60.745 60.000 23.68 5.51 41.90 2.85
3655 3672 0.036294 ACGCTGAAGGCTTCCCTAAC 60.036 55.000 23.68 8.14 41.90 2.34
3656 3673 1.206371 GTACGCTGAAGGCTTCCCTAA 59.794 52.381 23.68 4.84 41.90 2.69
3657 3674 0.822164 GTACGCTGAAGGCTTCCCTA 59.178 55.000 23.68 5.21 41.90 3.53
3658 3675 1.192146 TGTACGCTGAAGGCTTCCCT 61.192 55.000 23.68 6.55 45.77 4.20
3659 3676 1.019805 GTGTACGCTGAAGGCTTCCC 61.020 60.000 23.68 13.75 39.13 3.97
3660 3677 0.320421 TGTGTACGCTGAAGGCTTCC 60.320 55.000 23.68 8.95 39.13 3.46
3661 3678 1.071605 CTGTGTACGCTGAAGGCTTC 58.928 55.000 20.27 20.27 39.13 3.86
3662 3679 0.393077 ACTGTGTACGCTGAAGGCTT 59.607 50.000 18.77 0.00 39.13 4.35
3673 3690 5.587443 AGTTGTTACCAAAGGAACTGTGTAC 59.413 40.000 0.00 0.00 43.56 2.90
3711 3728 8.905850 ACATTATGCATGAATGTCATCTACAAA 58.094 29.630 19.90 0.84 42.51 2.83
3722 3739 7.592533 GCAGGTTTACTACATTATGCATGAATG 59.407 37.037 10.16 16.15 39.68 2.67
3723 3740 7.285172 TGCAGGTTTACTACATTATGCATGAAT 59.715 33.333 10.16 0.00 37.50 2.57
3724 3741 6.601217 TGCAGGTTTACTACATTATGCATGAA 59.399 34.615 10.16 0.11 37.50 2.57
3725 3742 6.118852 TGCAGGTTTACTACATTATGCATGA 58.881 36.000 10.16 0.00 37.50 3.07
3727 3744 5.009010 GCTGCAGGTTTACTACATTATGCAT 59.991 40.000 17.12 3.79 41.16 3.96
3745 3762 3.574237 GGGGGATAGGGGCTGCAG 61.574 72.222 10.11 10.11 0.00 4.41
3748 3765 0.178861 ATAGTGGGGGATAGGGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
3766 3783 6.976925 GCTCAAAACTTGCAAATAGAGCATAT 59.023 34.615 22.98 0.00 44.77 1.78
3781 3802 8.776376 TTTCATTGAAAAAGAGCTCAAAACTT 57.224 26.923 17.77 0.00 35.31 2.66
3782 3803 8.776376 TTTTCATTGAAAAAGAGCTCAAAACT 57.224 26.923 19.57 0.00 38.37 2.66
3789 3810 6.042437 ACCTGGATTTTCATTGAAAAAGAGCT 59.958 34.615 24.11 10.74 43.32 4.09
3798 3819 2.381618 TCCCCACCTGGATTTTCATTGA 59.618 45.455 0.00 0.00 37.39 2.57
3799 3820 2.497273 GTCCCCACCTGGATTTTCATTG 59.503 50.000 0.00 0.00 36.63 2.82
3809 3830 2.044650 CATGCAGTCCCCACCTGG 60.045 66.667 0.00 0.00 0.00 4.45
3817 3838 2.684881 CACCTGATTAACCATGCAGTCC 59.315 50.000 0.00 0.00 0.00 3.85
3857 3878 6.488006 CGATCCTTCCATCAATAAGAATGGTT 59.512 38.462 1.62 0.00 35.74 3.67
3859 3880 6.000219 ACGATCCTTCCATCAATAAGAATGG 59.000 40.000 0.00 0.00 35.58 3.16
3892 3914 2.004733 TCTGAATGAGCTGAATGCACG 58.995 47.619 0.00 0.00 45.94 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.