Multiple sequence alignment - TraesCS3A01G404700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G404700 chr3A 100.000 5376 0 0 1 5376 649630366 649635741 0.000000e+00 9928.0
1 TraesCS3A01G404700 chr3A 93.388 121 6 1 5258 5376 693182041 693181921 1.540000e-40 178.0
2 TraesCS3A01G404700 chr3B 93.203 3384 175 22 137 3487 677613929 677617290 0.000000e+00 4924.0
3 TraesCS3A01G404700 chr3B 86.309 1490 128 40 3490 4955 677617364 677618801 0.000000e+00 1552.0
4 TraesCS3A01G404700 chr3D 90.695 3482 204 34 1 3419 515000939 515004363 0.000000e+00 4525.0
5 TraesCS3A01G404700 chr3D 91.076 1199 71 15 3462 4652 515004363 515005533 0.000000e+00 1589.0
6 TraesCS3A01G404700 chr3D 81.098 164 19 8 4913 5075 515005765 515005917 2.630000e-23 121.0
7 TraesCS3A01G404700 chr3D 97.368 38 1 0 4672 4709 515005518 515005555 1.250000e-06 65.8
8 TraesCS3A01G404700 chr7B 93.388 121 6 1 5258 5376 612606425 612606545 1.540000e-40 178.0
9 TraesCS3A01G404700 chr7A 93.388 121 6 1 5258 5376 136467994 136467874 1.540000e-40 178.0
10 TraesCS3A01G404700 chr4A 93.388 121 6 1 5258 5376 137534679 137534799 1.540000e-40 178.0
11 TraesCS3A01G404700 chr4A 93.388 121 6 1 5258 5376 140976820 140976940 1.540000e-40 178.0
12 TraesCS3A01G404700 chr2A 93.388 121 6 1 5258 5376 109654099 109654219 1.540000e-40 178.0
13 TraesCS3A01G404700 chr2A 94.017 117 5 1 5262 5376 79054250 79054366 5.530000e-40 176.0
14 TraesCS3A01G404700 chr1A 93.388 121 6 1 5258 5376 554878080 554877960 1.540000e-40 178.0
15 TraesCS3A01G404700 chr6A 92.562 121 7 1 5258 5376 434092851 434092731 7.160000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G404700 chr3A 649630366 649635741 5375 False 9928.0 9928 100.00000 1 5376 1 chr3A.!!$F1 5375
1 TraesCS3A01G404700 chr3B 677613929 677618801 4872 False 3238.0 4924 89.75600 137 4955 2 chr3B.!!$F1 4818
2 TraesCS3A01G404700 chr3D 515000939 515005917 4978 False 1575.2 4525 90.05925 1 5075 4 chr3D.!!$F1 5074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 443 0.034059 ACGAGCTGGGTTGTTGAGAG 59.966 55.000 0.00 0.0 0.0 3.20 F
708 743 1.066430 CCTTCGGCTGTAGCTTGGTTA 60.066 52.381 3.63 0.0 41.7 2.85 F
1517 1553 1.352017 AGTGGTGATGGCAGTGATTCA 59.648 47.619 0.00 0.0 0.0 2.57 F
2597 2652 0.674895 AGCGTTCTGATGTTGAGGGC 60.675 55.000 0.00 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2248 0.804989 GAACCAGGCGTCTGAAATGG 59.195 55.000 20.91 4.31 43.49 3.16 R
2558 2613 0.601046 TTGCTGCACTTCCTCTGTCG 60.601 55.000 0.00 0.00 0.00 4.35 R
3077 3141 1.200948 GCCACTTGCAAGTCCATTCTC 59.799 52.381 28.97 9.30 40.77 2.87 R
4512 4664 0.038744 AGGGTGCTTGATGGAAGTGG 59.961 55.000 0.00 0.00 33.73 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.272769 CTCTCTCGTTTTCCCCTCGTT 59.727 52.381 0.00 0.00 0.00 3.85
40 41 3.998341 CTCGTTTTCCCCTCGTTTTATGA 59.002 43.478 0.00 0.00 0.00 2.15
43 44 6.171921 TCGTTTTCCCCTCGTTTTATGATAA 58.828 36.000 0.00 0.00 0.00 1.75
45 46 7.986320 TCGTTTTCCCCTCGTTTTATGATAATA 59.014 33.333 0.00 0.00 0.00 0.98
50 51 8.542497 TCCCCTCGTTTTATGATAATAAATCG 57.458 34.615 15.61 15.61 39.04 3.34
52 53 9.162764 CCCCTCGTTTTATGATAATAAATCGAT 57.837 33.333 21.18 0.00 42.35 3.59
89 90 2.603075 TGCTGCAAAGTAATTCCCCT 57.397 45.000 0.00 0.00 0.00 4.79
96 97 5.852827 TGCAAAGTAATTCCCCTTTTTCAG 58.147 37.500 0.00 0.00 0.00 3.02
97 98 5.365314 TGCAAAGTAATTCCCCTTTTTCAGT 59.635 36.000 0.00 0.00 0.00 3.41
124 125 4.858692 CCAAACGGCAATTATGTTCTTCAG 59.141 41.667 0.00 0.00 0.00 3.02
126 127 2.423538 ACGGCAATTATGTTCTTCAGCC 59.576 45.455 0.00 0.00 37.54 4.85
127 128 2.223572 CGGCAATTATGTTCTTCAGCCC 60.224 50.000 0.00 0.00 37.62 5.19
128 129 3.026694 GGCAATTATGTTCTTCAGCCCT 58.973 45.455 0.00 0.00 34.94 5.19
129 130 3.067320 GGCAATTATGTTCTTCAGCCCTC 59.933 47.826 0.00 0.00 34.94 4.30
130 131 3.950395 GCAATTATGTTCTTCAGCCCTCT 59.050 43.478 0.00 0.00 0.00 3.69
131 132 4.400567 GCAATTATGTTCTTCAGCCCTCTT 59.599 41.667 0.00 0.00 0.00 2.85
132 133 5.105595 GCAATTATGTTCTTCAGCCCTCTTT 60.106 40.000 0.00 0.00 0.00 2.52
133 134 6.558909 CAATTATGTTCTTCAGCCCTCTTTC 58.441 40.000 0.00 0.00 0.00 2.62
134 135 2.568623 TGTTCTTCAGCCCTCTTTCC 57.431 50.000 0.00 0.00 0.00 3.13
135 136 2.057922 TGTTCTTCAGCCCTCTTTCCT 58.942 47.619 0.00 0.00 0.00 3.36
163 164 5.551233 TCAAGTCTCTTTACTGTTCCCATG 58.449 41.667 0.00 0.00 0.00 3.66
200 201 1.312815 GCAGTACCCCAGATGCAATC 58.687 55.000 0.00 0.00 46.04 2.67
231 233 1.077285 CCCCTTCGCCCCGTATTTT 60.077 57.895 0.00 0.00 0.00 1.82
239 242 4.635833 TCGCCCCGTATTTTAAAAATCC 57.364 40.909 4.44 0.00 0.00 3.01
259 262 4.219919 TCCTTTTCTCGGGTGGAAATTTT 58.780 39.130 0.00 0.00 33.51 1.82
281 284 1.899437 TTCATGGACAGGCCCGAGTC 61.899 60.000 11.13 11.13 34.97 3.36
301 304 2.834549 TCGGCCTTTCTCTGAATTCTCT 59.165 45.455 7.05 0.00 0.00 3.10
408 443 0.034059 ACGAGCTGGGTTGTTGAGAG 59.966 55.000 0.00 0.00 0.00 3.20
411 446 1.072331 GAGCTGGGTTGTTGAGAGGAA 59.928 52.381 0.00 0.00 0.00 3.36
414 449 2.290577 GCTGGGTTGTTGAGAGGAAGAT 60.291 50.000 0.00 0.00 0.00 2.40
438 473 2.045524 AGTGTCTCTGCCTCCATATGG 58.954 52.381 16.25 16.25 0.00 2.74
442 477 2.050144 TCTCTGCCTCCATATGGTTCC 58.950 52.381 21.28 10.75 36.34 3.62
571 606 1.953559 TCGAGCATAATTGACCTGCC 58.046 50.000 0.00 0.00 36.56 4.85
586 621 6.913873 TGACCTGCCGAATTAATTTACTAC 57.086 37.500 1.43 0.00 0.00 2.73
587 622 6.646267 TGACCTGCCGAATTAATTTACTACT 58.354 36.000 1.43 0.00 0.00 2.57
588 623 6.537301 TGACCTGCCGAATTAATTTACTACTG 59.463 38.462 1.43 0.00 0.00 2.74
638 673 1.559682 TCTCCATTCCAAGCCACTACC 59.440 52.381 0.00 0.00 0.00 3.18
705 740 2.109126 GCCTTCGGCTGTAGCTTGG 61.109 63.158 3.63 2.93 46.69 3.61
708 743 1.066430 CCTTCGGCTGTAGCTTGGTTA 60.066 52.381 3.63 0.00 41.70 2.85
709 744 2.000447 CTTCGGCTGTAGCTTGGTTAC 59.000 52.381 3.63 0.00 41.70 2.50
858 893 2.743928 CCACGTCCAGCAGGCTTC 60.744 66.667 0.00 0.00 33.74 3.86
910 945 5.564768 TCACAACGTGTTTCAGTTATGTTG 58.435 37.500 0.00 0.00 43.45 3.33
912 947 5.328691 ACAACGTGTTTCAGTTATGTTGTG 58.671 37.500 11.92 0.00 46.75 3.33
918 953 6.510960 CGTGTTTCAGTTATGTTGTGTCATGA 60.511 38.462 0.00 0.00 0.00 3.07
1071 1107 1.417890 ACTGACCTGGGTGTTTCTGAG 59.582 52.381 0.00 0.00 0.00 3.35
1097 1133 8.771766 GGTAAGTTTTCGAAGATATTCATACCC 58.228 37.037 0.00 0.00 35.04 3.69
1116 1152 7.444792 TCATACCCCGCGTAATTTAAATTATGT 59.555 33.333 28.46 17.45 39.15 2.29
1146 1182 4.761227 TGTGAATCAACTAGAAATGCTGCA 59.239 37.500 4.13 4.13 0.00 4.41
1202 1238 5.952347 AGTTCTGTTCCTGGAAAGAGTTTTT 59.048 36.000 11.40 0.62 0.00 1.94
1243 1279 5.827797 TCACCTGCTTCTCTATGTTGTTTTT 59.172 36.000 0.00 0.00 0.00 1.94
1244 1280 6.017109 TCACCTGCTTCTCTATGTTGTTTTTC 60.017 38.462 0.00 0.00 0.00 2.29
1245 1281 5.241728 ACCTGCTTCTCTATGTTGTTTTTCC 59.758 40.000 0.00 0.00 0.00 3.13
1293 1329 3.559811 CCAGACACTGAATCATGGTTCCA 60.560 47.826 16.06 3.77 32.44 3.53
1517 1553 1.352017 AGTGGTGATGGCAGTGATTCA 59.648 47.619 0.00 0.00 0.00 2.57
1550 1586 2.441822 ATATGCCGGCCGAAGAGCTC 62.442 60.000 30.73 5.27 0.00 4.09
1579 1615 2.165030 CCACAGGATCTGGAACAATTGC 59.835 50.000 5.05 0.00 38.70 3.56
1753 1789 3.691609 GGTAGAGAAAATGCTCTTGGTGG 59.308 47.826 0.00 0.00 42.41 4.61
1766 1802 4.336713 GCTCTTGGTGGTAATTCAGATTCC 59.663 45.833 0.00 0.00 0.00 3.01
1767 1803 5.500234 CTCTTGGTGGTAATTCAGATTCCA 58.500 41.667 0.00 0.00 0.00 3.53
1771 1807 3.606687 GTGGTAATTCAGATTCCACCGT 58.393 45.455 0.00 0.00 37.42 4.83
1841 1883 4.141597 GCAAGGGCTCCTAGAAGAAATACT 60.142 45.833 0.00 0.00 36.96 2.12
1844 1886 4.651962 AGGGCTCCTAGAAGAAATACTGAC 59.348 45.833 0.00 0.00 28.47 3.51
1871 1913 4.298626 ACCCCAGACTTAGATATGCTTCA 58.701 43.478 0.00 0.00 0.00 3.02
1892 1934 7.591426 GCTTCAATGATAATACCAAAATCGGTC 59.409 37.037 0.00 0.00 40.67 4.79
2039 2090 4.523558 ACTACTTGTCTGACCTTGTAGACC 59.476 45.833 24.78 0.00 41.99 3.85
2052 2103 3.942130 TGTAGACCGATGATATGGCAG 57.058 47.619 0.00 0.00 0.00 4.85
2059 2110 6.299141 AGACCGATGATATGGCAGTTTATTT 58.701 36.000 0.00 0.00 0.00 1.40
2172 2223 3.826157 CCAAGAGCCTGAATGTTTTGGTA 59.174 43.478 0.00 0.00 31.33 3.25
2174 2225 5.464168 CAAGAGCCTGAATGTTTTGGTAAG 58.536 41.667 0.00 0.00 0.00 2.34
2175 2226 4.729868 AGAGCCTGAATGTTTTGGTAAGT 58.270 39.130 0.00 0.00 0.00 2.24
2176 2227 4.762251 AGAGCCTGAATGTTTTGGTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
2189 2241 9.307121 TGTTTTGGTAAGTCATAACACATTTTG 57.693 29.630 0.00 0.00 35.04 2.44
2196 2248 5.772521 AGTCATAACACATTTTGCCTGAAC 58.227 37.500 0.00 0.00 0.00 3.18
2249 2301 3.437049 GCATGACTACAAACCAGAAGACC 59.563 47.826 0.00 0.00 0.00 3.85
2273 2325 3.255888 AGACGAACAATGTCTGTAGCTCA 59.744 43.478 0.00 0.00 44.69 4.26
2301 2353 1.913951 ATCACAGAAGATGGCCGGCA 61.914 55.000 30.85 15.30 0.00 5.69
2411 2466 1.767681 GGAGAGAAGCATCCCATCACT 59.232 52.381 0.00 0.00 0.00 3.41
2439 2494 1.936547 CCGTTAAGAAGCCTGCTGATC 59.063 52.381 0.00 0.00 0.00 2.92
2491 2546 3.314331 ACGCCCTGTCACCAGAGG 61.314 66.667 0.00 0.00 41.50 3.69
2553 2608 2.096248 CCTCTACCTCTGAAAGACGCT 58.904 52.381 0.00 0.00 38.67 5.07
2597 2652 0.674895 AGCGTTCTGATGTTGAGGGC 60.675 55.000 0.00 0.00 0.00 5.19
2631 2686 4.193090 CTCTACAGGAGAAAGACGCTCTA 58.807 47.826 0.00 0.00 44.45 2.43
2701 2756 2.156098 GGCACATCCAAAGGTTACGAA 58.844 47.619 0.00 0.00 34.01 3.85
2710 2765 3.368495 CAAAGGTTACGAAAACCACTGC 58.632 45.455 21.03 0.73 42.69 4.40
2733 2788 4.261825 CGGTATGTTCCATCCTCTTCTCTC 60.262 50.000 0.00 0.00 0.00 3.20
2738 2793 2.744760 TCCATCCTCTTCTCTCACCAG 58.255 52.381 0.00 0.00 0.00 4.00
2747 2811 5.201713 TCTTCTCTCACCAGTGTTAACAG 57.798 43.478 8.98 0.00 0.00 3.16
2810 2874 2.668834 GCGGGTTTTGCGCTTATGTTTA 60.669 45.455 9.73 0.00 0.00 2.01
2849 2913 4.469586 TGGTGTTAGATCTCACATGGCTTA 59.530 41.667 12.70 0.00 36.43 3.09
3022 3086 2.031012 TGCCTCGACCAACAGCAG 59.969 61.111 0.00 0.00 0.00 4.24
3077 3141 1.204941 AGTCACTTAACTAGGCCAGCG 59.795 52.381 5.01 0.00 0.00 5.18
3127 3191 6.607735 ACAAAAATCAAGGTGCAAATCTTG 57.392 33.333 15.46 15.46 41.06 3.02
3286 3355 5.883115 GGCTGAAAAAGATAGAGGTAAGCTT 59.117 40.000 3.48 3.48 0.00 3.74
3348 3419 4.872691 GCATATTGCGATAGACATAGCCTT 59.127 41.667 0.00 0.00 39.76 4.35
3384 3455 6.434965 TGTTCATGATCAATGTTGTTCCATCT 59.565 34.615 0.00 0.00 37.56 2.90
3404 3475 4.151883 TCTGCCCTCAAAGCTTAATGTTT 58.848 39.130 0.00 0.00 0.00 2.83
3435 3506 2.836372 TGAGAGCTGTGAATCCTGTGAT 59.164 45.455 0.00 0.00 0.00 3.06
3451 3522 6.969043 TCCTGTGATAAATAACAAGGATGGT 58.031 36.000 0.00 0.00 0.00 3.55
3473 3544 9.886132 ATGGTAGGTTCAACAACTAGTTATTAG 57.114 33.333 8.04 0.00 38.74 1.73
3521 3663 3.642141 ACAGTGGGTCCTGTTTGAATTT 58.358 40.909 0.00 0.00 42.99 1.82
3529 3671 4.700692 GGTCCTGTTTGAATTTAGAGGGAC 59.299 45.833 0.00 0.00 39.68 4.46
3563 3705 7.232941 GTCTCCTGCTCATAAACCCTAGTAATA 59.767 40.741 0.00 0.00 0.00 0.98
3569 3711 6.015603 GCTCATAAACCCTAGTAATACGGTCT 60.016 42.308 0.00 0.00 0.00 3.85
3606 3748 6.238897 CCAGTTGGCACATAAAAACAGAGTAA 60.239 38.462 0.00 0.00 39.30 2.24
3627 3770 7.033791 AGTAATAGGTAATACCGATGAATGCG 58.966 38.462 5.82 0.00 44.90 4.73
3684 3827 7.361286 CCTGAACTTTGCATAGTCTAAGTTTCC 60.361 40.741 10.38 1.60 40.32 3.13
3715 3860 7.758495 ACTAAACGTTATGATTCAAATGGGTC 58.242 34.615 0.00 0.00 0.00 4.46
3725 3870 5.885352 TGATTCAAATGGGTCATTATCGTGT 59.115 36.000 0.00 0.00 32.43 4.49
3740 3885 0.304705 CGTGTTGTTGACTGGCACTC 59.695 55.000 0.00 0.00 0.00 3.51
3810 3955 0.618458 GGCCATGAAGGTACTGGTCA 59.382 55.000 0.00 0.00 40.86 4.02
3875 4020 4.778143 GGGCATTCCGGCGACAGT 62.778 66.667 9.30 0.00 42.43 3.55
3919 4064 4.363138 GAAGAAAACAACTCCTTTGCAGG 58.637 43.478 0.00 0.00 42.50 4.85
3979 4124 0.464036 TTTCGTCAGCACACTGTCCT 59.536 50.000 0.00 0.00 44.77 3.85
3991 4136 4.941263 GCACACTGTCCTTAACCATATTGA 59.059 41.667 0.00 0.00 0.00 2.57
4156 4301 1.132262 ACAACGAGCAAACCAACTGTG 59.868 47.619 0.00 0.00 0.00 3.66
4217 4362 5.970023 GCTGCTCATCATGAACACTTTATTC 59.030 40.000 0.00 0.00 0.00 1.75
4261 4406 3.676646 GCATCATGAACACTGAAAAAGCC 59.323 43.478 0.00 0.00 0.00 4.35
4273 4418 4.520492 ACTGAAAAAGCCACCTTATGTCAG 59.480 41.667 0.00 0.00 38.27 3.51
4327 4472 2.111384 TCTAACTCAGGCCATCTCACC 58.889 52.381 5.01 0.00 0.00 4.02
4328 4473 1.139853 CTAACTCAGGCCATCTCACCC 59.860 57.143 5.01 0.00 0.00 4.61
4329 4474 0.842030 AACTCAGGCCATCTCACCCA 60.842 55.000 5.01 0.00 0.00 4.51
4405 4555 1.099879 GCATCCAAGCTAGTGGCCTG 61.100 60.000 3.32 1.78 43.05 4.85
4407 4557 2.599645 ATCCAAGCTAGTGGCCTGCG 62.600 60.000 3.32 0.00 43.05 5.18
4426 4576 1.087771 GTAAACGGTGGATCTGCGGG 61.088 60.000 0.00 0.00 0.00 6.13
4427 4577 1.259142 TAAACGGTGGATCTGCGGGA 61.259 55.000 0.00 0.00 0.00 5.14
4429 4579 3.770040 CGGTGGATCTGCGGGACA 61.770 66.667 0.00 0.00 0.00 4.02
4458 4610 3.435671 GGTTACACGCATCTAAAAGCACT 59.564 43.478 0.00 0.00 0.00 4.40
4470 4622 2.555547 AAGCACTGCACGGGCTTTC 61.556 57.895 12.74 0.00 44.93 2.62
4471 4623 2.965716 AAGCACTGCACGGGCTTTCT 62.966 55.000 12.74 0.00 44.93 2.52
4487 4639 1.543607 TTCTGCGCCATCCAATTTCA 58.456 45.000 4.18 0.00 0.00 2.69
4493 4645 2.226437 GCGCCATCCAATTTCATCGTAT 59.774 45.455 0.00 0.00 0.00 3.06
4512 4664 4.724334 CGTATGATGTCTATGCGTATCGAC 59.276 45.833 10.59 10.59 31.54 4.20
4515 4667 2.768833 TGTCTATGCGTATCGACCAC 57.231 50.000 14.07 0.00 30.23 4.16
4538 4690 1.293924 CATCAAGCACCCTCATCGAC 58.706 55.000 0.00 0.00 0.00 4.20
4551 4703 3.318017 CTCATCGACCTTCGTTCAGTTT 58.682 45.455 0.00 0.00 41.35 2.66
4562 4714 6.090898 ACCTTCGTTCAGTTTCAAGAATATCG 59.909 38.462 0.00 0.00 0.00 2.92
4564 4716 6.627690 TCGTTCAGTTTCAAGAATATCGTC 57.372 37.500 0.00 0.00 0.00 4.20
4609 4761 9.809096 CATAAGTCATATATATCCACTGACCAC 57.191 37.037 8.98 0.00 37.52 4.16
4644 4796 2.413239 CGTACTTAGCTTCGTCGTCCAA 60.413 50.000 0.00 0.00 0.00 3.53
4645 4797 2.349297 ACTTAGCTTCGTCGTCCAAG 57.651 50.000 0.00 0.00 0.00 3.61
4646 4798 1.067776 ACTTAGCTTCGTCGTCCAAGG 60.068 52.381 0.00 0.00 0.00 3.61
4647 4799 0.245539 TTAGCTTCGTCGTCCAAGGG 59.754 55.000 0.00 0.00 0.00 3.95
4648 4800 0.609957 TAGCTTCGTCGTCCAAGGGA 60.610 55.000 0.00 0.00 0.00 4.20
4674 4826 0.461961 TTTTTGTTTGCAGGGGGTCG 59.538 50.000 0.00 0.00 0.00 4.79
4675 4827 0.684805 TTTTGTTTGCAGGGGGTCGT 60.685 50.000 0.00 0.00 0.00 4.34
4676 4828 1.104577 TTTGTTTGCAGGGGGTCGTC 61.105 55.000 0.00 0.00 0.00 4.20
4677 4829 2.671963 GTTTGCAGGGGGTCGTCC 60.672 66.667 0.00 0.00 0.00 4.79
4678 4830 3.172106 TTTGCAGGGGGTCGTCCA 61.172 61.111 0.04 0.00 37.22 4.02
4679 4831 2.758207 TTTGCAGGGGGTCGTCCAA 61.758 57.895 0.04 0.00 37.22 3.53
4724 4916 8.828688 ACTGTATATAAGATTAGCCGAAAACC 57.171 34.615 0.00 0.00 0.00 3.27
4734 4926 4.278956 CGAAAACCTCGGGACAGG 57.721 61.111 0.00 0.00 44.20 4.00
4761 4954 3.575506 TGGCATGTCCATGAACTCC 57.424 52.632 11.35 3.51 40.72 3.85
4776 4969 5.308976 TGAACTCCATGTGTGGCATATAT 57.691 39.130 0.00 0.00 45.63 0.86
4781 4974 9.265901 GAACTCCATGTGTGGCATATATATATC 57.734 37.037 2.03 0.00 45.63 1.63
4803 4996 0.443869 CATTGGTGCTGCAGTCGTAC 59.556 55.000 16.64 9.49 0.00 3.67
4804 4997 0.673644 ATTGGTGCTGCAGTCGTACC 60.674 55.000 16.64 17.81 0.00 3.34
4805 4998 2.809601 GGTGCTGCAGTCGTACCG 60.810 66.667 16.64 0.00 0.00 4.02
4806 4999 2.049433 GTGCTGCAGTCGTACCGT 60.049 61.111 16.64 0.00 0.00 4.83
4807 5000 1.210931 GTGCTGCAGTCGTACCGTA 59.789 57.895 16.64 0.00 0.00 4.02
4808 5001 1.069378 GTGCTGCAGTCGTACCGTAC 61.069 60.000 16.64 0.00 0.00 3.67
4817 5010 1.587088 CGTACCGTACGTCCATGCC 60.587 63.158 20.61 0.00 46.41 4.40
4818 5011 1.512230 GTACCGTACGTCCATGCCA 59.488 57.895 15.21 0.00 0.00 4.92
4819 5012 0.103572 GTACCGTACGTCCATGCCAT 59.896 55.000 15.21 0.00 0.00 4.40
4820 5013 0.103390 TACCGTACGTCCATGCCATG 59.897 55.000 15.21 0.00 0.00 3.66
4830 5023 0.762418 CCATGCCATGGGAATTGCAT 59.238 50.000 16.33 4.38 46.86 3.96
4853 5046 3.333804 TGCATGCGTTAGTTCATGAGAA 58.666 40.909 14.09 0.00 41.82 2.87
4855 5048 4.215185 TGCATGCGTTAGTTCATGAGAAAA 59.785 37.500 14.09 0.00 41.82 2.29
4857 5050 6.093357 TGCATGCGTTAGTTCATGAGAAAATA 59.907 34.615 14.09 0.00 41.82 1.40
4858 5051 6.630443 GCATGCGTTAGTTCATGAGAAAATAG 59.370 38.462 0.00 0.00 41.82 1.73
4860 5053 7.525688 TGCGTTAGTTCATGAGAAAATAGAG 57.474 36.000 0.00 0.00 35.08 2.43
4862 5055 7.275779 TGCGTTAGTTCATGAGAAAATAGAGAC 59.724 37.037 0.00 0.00 35.08 3.36
4864 5057 7.043986 CGTTAGTTCATGAGAAAATAGAGACGG 60.044 40.741 0.00 0.00 35.08 4.79
4865 5058 6.287589 AGTTCATGAGAAAATAGAGACGGT 57.712 37.500 0.00 0.00 35.08 4.83
4867 5060 4.433615 TCATGAGAAAATAGAGACGGTGC 58.566 43.478 0.00 0.00 0.00 5.01
4871 5064 2.301870 AGAAAATAGAGACGGTGCCACA 59.698 45.455 0.00 0.00 0.00 4.17
4872 5065 2.386661 AAATAGAGACGGTGCCACAG 57.613 50.000 0.00 0.00 0.00 3.66
4873 5066 0.108138 AATAGAGACGGTGCCACAGC 60.108 55.000 0.00 0.00 40.48 4.40
4885 5078 2.283529 CCACAGCAGGTCCTACCGT 61.284 63.158 0.00 0.00 44.90 4.83
4901 5094 2.982130 GTGACGGCCAGTGGATCT 59.018 61.111 15.20 0.00 0.00 2.75
4909 5102 0.530870 GCCAGTGGATCTTAGGACGC 60.531 60.000 15.20 0.00 0.00 5.19
4919 5119 1.000145 CTTAGGACGCGCTCTTTTCC 59.000 55.000 5.73 4.16 0.00 3.13
4954 5154 0.179153 GTACGTACGAGGTTGAGGGC 60.179 60.000 24.41 0.00 0.00 5.19
4955 5155 1.315257 TACGTACGAGGTTGAGGGCC 61.315 60.000 24.41 0.00 0.00 5.80
4960 5160 4.785453 GAGGTTGAGGGCCGGCAG 62.785 72.222 30.85 0.00 0.00 4.85
4962 5162 3.712907 GGTTGAGGGCCGGCAGTA 61.713 66.667 30.85 8.43 0.00 2.74
4963 5163 2.125106 GTTGAGGGCCGGCAGTAG 60.125 66.667 30.85 0.00 0.00 2.57
4964 5164 3.399181 TTGAGGGCCGGCAGTAGG 61.399 66.667 30.85 0.00 0.00 3.18
4973 5173 2.897350 GGCAGTAGGCGATGGTGC 60.897 66.667 0.00 0.00 46.16 5.01
4996 5203 1.632018 GCCATGGTAGTACCCCTGCA 61.632 60.000 16.91 0.00 37.50 4.41
5058 5266 3.181455 CCATCCATCATTACCCTTCGACA 60.181 47.826 0.00 0.00 0.00 4.35
5068 5276 0.535102 CCCTTCGACAACAAGCCTGT 60.535 55.000 0.00 0.00 37.39 4.00
5070 5278 0.588252 CTTCGACAACAAGCCTGTGG 59.412 55.000 0.00 0.00 35.37 4.17
5075 5283 1.008538 CAACAAGCCTGTGGAACGC 60.009 57.895 0.00 0.00 42.39 4.84
5076 5284 2.193536 AACAAGCCTGTGGAACGCC 61.194 57.895 0.00 0.00 42.39 5.68
5077 5285 2.281761 CAAGCCTGTGGAACGCCT 60.282 61.111 0.00 0.00 42.39 5.52
5078 5286 2.032681 AAGCCTGTGGAACGCCTC 59.967 61.111 0.00 0.00 42.39 4.70
5079 5287 2.818169 AAGCCTGTGGAACGCCTCA 61.818 57.895 0.00 0.00 42.39 3.86
5080 5288 2.045926 GCCTGTGGAACGCCTCAT 60.046 61.111 0.00 0.00 42.39 2.90
5081 5289 2.109126 GCCTGTGGAACGCCTCATC 61.109 63.158 0.00 0.00 42.39 2.92
5082 5290 1.599047 CCTGTGGAACGCCTCATCT 59.401 57.895 0.00 0.00 42.39 2.90
5083 5291 0.460987 CCTGTGGAACGCCTCATCTC 60.461 60.000 0.00 0.00 42.39 2.75
5084 5292 0.803768 CTGTGGAACGCCTCATCTCG 60.804 60.000 0.00 0.00 42.39 4.04
5085 5293 1.215647 GTGGAACGCCTCATCTCGT 59.784 57.895 0.00 0.00 41.06 4.18
5089 5297 2.827604 AACGCCTCATCTCGTTGTG 58.172 52.632 0.00 0.00 45.68 3.33
5090 5298 0.033504 AACGCCTCATCTCGTTGTGT 59.966 50.000 0.00 0.00 45.68 3.72
5091 5299 0.033504 ACGCCTCATCTCGTTGTGTT 59.966 50.000 0.00 0.00 35.09 3.32
5092 5300 1.148310 CGCCTCATCTCGTTGTGTTT 58.852 50.000 0.00 0.00 0.00 2.83
5093 5301 1.126846 CGCCTCATCTCGTTGTGTTTC 59.873 52.381 0.00 0.00 0.00 2.78
5094 5302 2.417719 GCCTCATCTCGTTGTGTTTCT 58.582 47.619 0.00 0.00 0.00 2.52
5095 5303 2.413453 GCCTCATCTCGTTGTGTTTCTC 59.587 50.000 0.00 0.00 0.00 2.87
5096 5304 3.862642 GCCTCATCTCGTTGTGTTTCTCT 60.863 47.826 0.00 0.00 0.00 3.10
5097 5305 3.923461 CCTCATCTCGTTGTGTTTCTCTC 59.077 47.826 0.00 0.00 0.00 3.20
5098 5306 3.565516 TCATCTCGTTGTGTTTCTCTCG 58.434 45.455 0.00 0.00 0.00 4.04
5099 5307 2.417339 TCTCGTTGTGTTTCTCTCGG 57.583 50.000 0.00 0.00 0.00 4.63
5100 5308 1.951602 TCTCGTTGTGTTTCTCTCGGA 59.048 47.619 0.00 0.00 0.00 4.55
5101 5309 2.359848 TCTCGTTGTGTTTCTCTCGGAA 59.640 45.455 0.00 0.00 0.00 4.30
5102 5310 3.120792 CTCGTTGTGTTTCTCTCGGAAA 58.879 45.455 0.00 0.00 41.11 3.13
5103 5311 3.523547 TCGTTGTGTTTCTCTCGGAAAA 58.476 40.909 0.00 0.00 44.34 2.29
5104 5312 3.933955 TCGTTGTGTTTCTCTCGGAAAAA 59.066 39.130 0.00 0.00 44.34 1.94
5105 5313 4.033587 TCGTTGTGTTTCTCTCGGAAAAAG 59.966 41.667 0.00 0.00 44.34 2.27
5106 5314 4.598062 GTTGTGTTTCTCTCGGAAAAAGG 58.402 43.478 0.00 0.00 44.34 3.11
5107 5315 4.145365 TGTGTTTCTCTCGGAAAAAGGA 57.855 40.909 0.00 0.00 44.34 3.36
5108 5316 4.714632 TGTGTTTCTCTCGGAAAAAGGAT 58.285 39.130 0.00 0.00 44.34 3.24
5109 5317 4.515191 TGTGTTTCTCTCGGAAAAAGGATG 59.485 41.667 0.00 0.00 44.34 3.51
5110 5318 4.755123 GTGTTTCTCTCGGAAAAAGGATGA 59.245 41.667 0.00 0.00 44.34 2.92
5111 5319 5.412904 GTGTTTCTCTCGGAAAAAGGATGAT 59.587 40.000 0.00 0.00 44.34 2.45
5112 5320 6.003950 TGTTTCTCTCGGAAAAAGGATGATT 58.996 36.000 0.00 0.00 44.34 2.57
5113 5321 6.072508 TGTTTCTCTCGGAAAAAGGATGATTG 60.073 38.462 0.00 0.00 44.34 2.67
5114 5322 5.420725 TCTCTCGGAAAAAGGATGATTGA 57.579 39.130 0.00 0.00 0.00 2.57
5115 5323 5.994250 TCTCTCGGAAAAAGGATGATTGAT 58.006 37.500 0.00 0.00 0.00 2.57
5116 5324 6.051717 TCTCTCGGAAAAAGGATGATTGATC 58.948 40.000 0.00 0.00 0.00 2.92
5117 5325 5.744171 TCTCGGAAAAAGGATGATTGATCA 58.256 37.500 0.00 0.00 41.70 2.92
5131 5339 6.892310 TGATTGATCATCGTTGTAGAACTG 57.108 37.500 0.00 0.00 34.08 3.16
5132 5340 6.398095 TGATTGATCATCGTTGTAGAACTGT 58.602 36.000 0.00 0.00 34.08 3.55
5133 5341 6.311200 TGATTGATCATCGTTGTAGAACTGTG 59.689 38.462 0.00 0.25 34.08 3.66
5134 5342 5.385509 TGATCATCGTTGTAGAACTGTGA 57.614 39.130 0.86 5.48 31.67 3.58
5135 5343 5.778862 TGATCATCGTTGTAGAACTGTGAA 58.221 37.500 9.78 0.00 31.21 3.18
5136 5344 5.633601 TGATCATCGTTGTAGAACTGTGAAC 59.366 40.000 9.78 8.42 31.21 3.18
5137 5345 4.304110 TCATCGTTGTAGAACTGTGAACC 58.696 43.478 0.86 0.00 0.00 3.62
5138 5346 3.804786 TCGTTGTAGAACTGTGAACCA 57.195 42.857 0.86 0.00 0.00 3.67
5140 5348 3.382227 TCGTTGTAGAACTGTGAACCAGA 59.618 43.478 0.86 0.00 44.49 3.86
5141 5349 3.736252 CGTTGTAGAACTGTGAACCAGAG 59.264 47.826 0.86 0.00 44.49 3.35
5142 5350 4.058817 GTTGTAGAACTGTGAACCAGAGG 58.941 47.826 0.00 0.00 44.49 3.69
5143 5351 3.572642 TGTAGAACTGTGAACCAGAGGA 58.427 45.455 0.00 0.00 44.49 3.71
5144 5352 3.574396 TGTAGAACTGTGAACCAGAGGAG 59.426 47.826 0.00 0.00 44.49 3.69
5145 5353 2.964209 AGAACTGTGAACCAGAGGAGA 58.036 47.619 0.00 0.00 44.49 3.71
5146 5354 2.896685 AGAACTGTGAACCAGAGGAGAG 59.103 50.000 0.00 0.00 44.49 3.20
5147 5355 1.638529 ACTGTGAACCAGAGGAGAGG 58.361 55.000 0.00 0.00 44.49 3.69
5148 5356 0.901124 CTGTGAACCAGAGGAGAGGG 59.099 60.000 0.00 0.00 44.49 4.30
5149 5357 0.545309 TGTGAACCAGAGGAGAGGGG 60.545 60.000 0.00 0.00 0.00 4.79
5150 5358 1.613630 TGAACCAGAGGAGAGGGGC 60.614 63.158 0.00 0.00 0.00 5.80
5151 5359 2.685380 AACCAGAGGAGAGGGGCG 60.685 66.667 0.00 0.00 0.00 6.13
5152 5360 3.547787 AACCAGAGGAGAGGGGCGT 62.548 63.158 0.00 0.00 0.00 5.68
5153 5361 3.465403 CCAGAGGAGAGGGGCGTG 61.465 72.222 0.00 0.00 0.00 5.34
5154 5362 4.154347 CAGAGGAGAGGGGCGTGC 62.154 72.222 0.00 0.00 0.00 5.34
5155 5363 4.704103 AGAGGAGAGGGGCGTGCA 62.704 66.667 0.00 0.00 0.00 4.57
5156 5364 4.459089 GAGGAGAGGGGCGTGCAC 62.459 72.222 6.82 6.82 0.00 4.57
5159 5367 3.755628 GAGAGGGGCGTGCACGTA 61.756 66.667 36.80 0.00 42.22 3.57
5160 5368 3.984200 GAGAGGGGCGTGCACGTAC 62.984 68.421 36.80 28.93 42.22 3.67
5161 5369 4.367023 GAGGGGCGTGCACGTACA 62.367 66.667 36.80 0.00 42.22 2.90
5162 5370 4.373116 AGGGGCGTGCACGTACAG 62.373 66.667 36.80 12.61 42.22 2.74
5173 5381 4.777781 CGTACAGCGTTGGATCGA 57.222 55.556 3.74 0.00 35.54 3.59
5174 5382 2.275703 CGTACAGCGTTGGATCGAC 58.724 57.895 3.74 0.00 35.54 4.20
5175 5383 1.138047 CGTACAGCGTTGGATCGACC 61.138 60.000 3.74 0.00 36.00 4.79
5176 5384 0.172803 GTACAGCGTTGGATCGACCT 59.827 55.000 3.74 0.00 39.86 3.85
5177 5385 1.402968 GTACAGCGTTGGATCGACCTA 59.597 52.381 3.74 0.00 39.86 3.08
5178 5386 0.172803 ACAGCGTTGGATCGACCTAC 59.827 55.000 3.74 0.00 40.14 3.18
5179 5387 0.527817 CAGCGTTGGATCGACCTACC 60.528 60.000 10.96 3.81 40.36 3.18
5180 5388 1.227176 GCGTTGGATCGACCTACCC 60.227 63.158 10.96 2.07 40.36 3.69
5181 5389 1.673808 GCGTTGGATCGACCTACCCT 61.674 60.000 10.96 0.00 40.36 4.34
5182 5390 0.822164 CGTTGGATCGACCTACCCTT 59.178 55.000 10.96 0.00 40.36 3.95
5183 5391 1.206371 CGTTGGATCGACCTACCCTTT 59.794 52.381 10.96 0.00 40.36 3.11
5184 5392 2.354403 CGTTGGATCGACCTACCCTTTT 60.354 50.000 10.96 0.00 40.36 2.27
5185 5393 3.682696 GTTGGATCGACCTACCCTTTTT 58.317 45.455 0.00 0.00 38.20 1.94
5208 5416 3.633361 GGGAACTGACCCTCTGTTG 57.367 57.895 0.00 0.00 45.90 3.33
5209 5417 0.606673 GGGAACTGACCCTCTGTTGC 60.607 60.000 0.00 5.35 45.90 4.17
5210 5418 0.606673 GGAACTGACCCTCTGTTGCC 60.607 60.000 0.00 0.00 39.48 4.52
5211 5419 0.108585 GAACTGACCCTCTGTTGCCA 59.891 55.000 0.00 0.00 38.41 4.92
5212 5420 0.773644 AACTGACCCTCTGTTGCCAT 59.226 50.000 0.00 0.00 37.20 4.40
5213 5421 0.037303 ACTGACCCTCTGTTGCCATG 59.963 55.000 0.00 0.00 0.00 3.66
5214 5422 0.037303 CTGACCCTCTGTTGCCATGT 59.963 55.000 0.00 0.00 0.00 3.21
5215 5423 1.278985 CTGACCCTCTGTTGCCATGTA 59.721 52.381 0.00 0.00 0.00 2.29
5216 5424 1.003118 TGACCCTCTGTTGCCATGTAC 59.997 52.381 0.00 0.00 0.00 2.90
5217 5425 1.279271 GACCCTCTGTTGCCATGTACT 59.721 52.381 0.00 0.00 0.00 2.73
5218 5426 1.279271 ACCCTCTGTTGCCATGTACTC 59.721 52.381 0.00 0.00 0.00 2.59
5219 5427 1.407437 CCCTCTGTTGCCATGTACTCC 60.407 57.143 0.00 0.00 0.00 3.85
5220 5428 1.278985 CCTCTGTTGCCATGTACTCCA 59.721 52.381 0.00 0.00 0.00 3.86
5221 5429 2.092753 CCTCTGTTGCCATGTACTCCAT 60.093 50.000 0.00 0.00 0.00 3.41
5222 5430 3.201290 CTCTGTTGCCATGTACTCCATC 58.799 50.000 0.00 0.00 0.00 3.51
5223 5431 2.092968 TCTGTTGCCATGTACTCCATCC 60.093 50.000 0.00 0.00 0.00 3.51
5224 5432 1.299541 GTTGCCATGTACTCCATCCG 58.700 55.000 0.00 0.00 0.00 4.18
5225 5433 1.134521 GTTGCCATGTACTCCATCCGA 60.135 52.381 0.00 0.00 0.00 4.55
5226 5434 1.423584 TGCCATGTACTCCATCCGAT 58.576 50.000 0.00 0.00 0.00 4.18
5227 5435 1.344438 TGCCATGTACTCCATCCGATC 59.656 52.381 0.00 0.00 0.00 3.69
5228 5436 1.338200 GCCATGTACTCCATCCGATCC 60.338 57.143 0.00 0.00 0.00 3.36
5229 5437 2.251818 CCATGTACTCCATCCGATCCT 58.748 52.381 0.00 0.00 0.00 3.24
5230 5438 2.634940 CCATGTACTCCATCCGATCCTT 59.365 50.000 0.00 0.00 0.00 3.36
5231 5439 3.071602 CCATGTACTCCATCCGATCCTTT 59.928 47.826 0.00 0.00 0.00 3.11
5232 5440 4.444876 CCATGTACTCCATCCGATCCTTTT 60.445 45.833 0.00 0.00 0.00 2.27
5233 5441 4.837093 TGTACTCCATCCGATCCTTTTT 57.163 40.909 0.00 0.00 0.00 1.94
5234 5442 5.943349 TGTACTCCATCCGATCCTTTTTA 57.057 39.130 0.00 0.00 0.00 1.52
5235 5443 5.667466 TGTACTCCATCCGATCCTTTTTAC 58.333 41.667 0.00 0.00 0.00 2.01
5236 5444 5.424252 TGTACTCCATCCGATCCTTTTTACT 59.576 40.000 0.00 0.00 0.00 2.24
5237 5445 5.024785 ACTCCATCCGATCCTTTTTACTC 57.975 43.478 0.00 0.00 0.00 2.59
5238 5446 4.141688 ACTCCATCCGATCCTTTTTACTCC 60.142 45.833 0.00 0.00 0.00 3.85
5239 5447 3.778075 TCCATCCGATCCTTTTTACTCCA 59.222 43.478 0.00 0.00 0.00 3.86
5240 5448 3.877508 CCATCCGATCCTTTTTACTCCAC 59.122 47.826 0.00 0.00 0.00 4.02
5241 5449 4.513442 CATCCGATCCTTTTTACTCCACA 58.487 43.478 0.00 0.00 0.00 4.17
5242 5450 3.934068 TCCGATCCTTTTTACTCCACAC 58.066 45.455 0.00 0.00 0.00 3.82
5243 5451 3.325425 TCCGATCCTTTTTACTCCACACA 59.675 43.478 0.00 0.00 0.00 3.72
5244 5452 4.019681 TCCGATCCTTTTTACTCCACACAT 60.020 41.667 0.00 0.00 0.00 3.21
5245 5453 4.700213 CCGATCCTTTTTACTCCACACATT 59.300 41.667 0.00 0.00 0.00 2.71
5246 5454 5.878116 CCGATCCTTTTTACTCCACACATTA 59.122 40.000 0.00 0.00 0.00 1.90
5247 5455 6.373216 CCGATCCTTTTTACTCCACACATTAA 59.627 38.462 0.00 0.00 0.00 1.40
5248 5456 7.241376 CGATCCTTTTTACTCCACACATTAAC 58.759 38.462 0.00 0.00 0.00 2.01
5249 5457 7.119262 CGATCCTTTTTACTCCACACATTAACT 59.881 37.037 0.00 0.00 0.00 2.24
5250 5458 8.706322 ATCCTTTTTACTCCACACATTAACTT 57.294 30.769 0.00 0.00 0.00 2.66
5251 5459 8.528044 TCCTTTTTACTCCACACATTAACTTT 57.472 30.769 0.00 0.00 0.00 2.66
5252 5460 8.410141 TCCTTTTTACTCCACACATTAACTTTG 58.590 33.333 0.00 0.00 0.00 2.77
5253 5461 8.194769 CCTTTTTACTCCACACATTAACTTTGT 58.805 33.333 0.00 0.00 0.00 2.83
5254 5462 9.233232 CTTTTTACTCCACACATTAACTTTGTC 57.767 33.333 0.00 0.00 0.00 3.18
5255 5463 8.514330 TTTTACTCCACACATTAACTTTGTCT 57.486 30.769 0.00 0.00 0.00 3.41
5256 5464 7.490962 TTACTCCACACATTAACTTTGTCTG 57.509 36.000 0.00 0.00 0.00 3.51
5257 5465 5.680619 ACTCCACACATTAACTTTGTCTGA 58.319 37.500 0.00 0.00 0.00 3.27
5258 5466 6.119536 ACTCCACACATTAACTTTGTCTGAA 58.880 36.000 0.00 0.00 0.00 3.02
5259 5467 6.601613 ACTCCACACATTAACTTTGTCTGAAA 59.398 34.615 0.00 0.00 0.00 2.69
5260 5468 7.285401 ACTCCACACATTAACTTTGTCTGAAAT 59.715 33.333 0.00 0.00 0.00 2.17
5261 5469 8.684386 TCCACACATTAACTTTGTCTGAAATA 57.316 30.769 0.00 0.00 0.00 1.40
5262 5470 9.295825 TCCACACATTAACTTTGTCTGAAATAT 57.704 29.630 0.00 0.00 0.00 1.28
5289 5497 9.768215 AATATGAAAATATACCCCGAAATGGAT 57.232 29.630 0.00 0.00 42.00 3.41
5290 5498 7.703058 ATGAAAATATACCCCGAAATGGATC 57.297 36.000 0.00 0.00 42.00 3.36
5291 5499 6.848069 TGAAAATATACCCCGAAATGGATCT 58.152 36.000 0.00 0.00 42.00 2.75
5292 5500 7.980032 TGAAAATATACCCCGAAATGGATCTA 58.020 34.615 0.00 0.00 42.00 1.98
5293 5501 8.441572 TGAAAATATACCCCGAAATGGATCTAA 58.558 33.333 0.00 0.00 42.00 2.10
5294 5502 9.462606 GAAAATATACCCCGAAATGGATCTAAT 57.537 33.333 0.00 0.00 42.00 1.73
5302 5510 9.243105 ACCCCGAAATGGATCTAATAATAAATG 57.757 33.333 0.00 0.00 42.00 2.32
5303 5511 9.243105 CCCCGAAATGGATCTAATAATAAATGT 57.757 33.333 0.00 0.00 42.00 2.71
5368 5576 9.559732 TTAAAGTTGAATGAGATTGACTTCAGA 57.440 29.630 0.00 0.00 29.91 3.27
5369 5577 7.432350 AAGTTGAATGAGATTGACTTCAGAC 57.568 36.000 0.00 0.00 0.00 3.51
5370 5578 6.528321 AGTTGAATGAGATTGACTTCAGACA 58.472 36.000 0.00 0.00 0.00 3.41
5371 5579 6.994496 AGTTGAATGAGATTGACTTCAGACAA 59.006 34.615 0.00 0.00 34.59 3.18
5372 5580 7.500227 AGTTGAATGAGATTGACTTCAGACAAA 59.500 33.333 0.00 0.00 33.89 2.83
5373 5581 7.194607 TGAATGAGATTGACTTCAGACAAAC 57.805 36.000 0.00 0.00 33.89 2.93
5374 5582 6.205464 TGAATGAGATTGACTTCAGACAAACC 59.795 38.462 0.00 0.00 33.89 3.27
5375 5583 5.296151 TGAGATTGACTTCAGACAAACCT 57.704 39.130 0.00 0.00 33.89 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.064371 GGGGAAAACGAGAGAGTACTAAAATTC 59.936 40.741 0.00 0.00 0.00 2.17
13 14 0.889306 CGAGGGGAAAACGAGAGAGT 59.111 55.000 0.00 0.00 0.00 3.24
18 19 3.998341 TCATAAAACGAGGGGAAAACGAG 59.002 43.478 0.00 0.00 0.00 4.18
72 73 5.852827 TGAAAAAGGGGAATTACTTTGCAG 58.147 37.500 3.81 0.00 37.04 4.41
89 90 2.196295 CCGTTTGGCGAACTGAAAAA 57.804 45.000 15.34 0.00 44.77 1.94
124 125 3.491342 ACTTGAAGAAAGGAAAGAGGGC 58.509 45.455 0.00 0.00 40.51 5.19
126 127 5.863965 AGAGACTTGAAGAAAGGAAAGAGG 58.136 41.667 0.00 0.00 40.51 3.69
127 128 7.800155 AAAGAGACTTGAAGAAAGGAAAGAG 57.200 36.000 0.00 0.00 40.51 2.85
128 129 8.487028 AGTAAAGAGACTTGAAGAAAGGAAAGA 58.513 33.333 0.00 0.00 40.51 2.52
129 130 8.555361 CAGTAAAGAGACTTGAAGAAAGGAAAG 58.445 37.037 0.00 0.00 40.51 2.62
130 131 8.047310 ACAGTAAAGAGACTTGAAGAAAGGAAA 58.953 33.333 0.00 0.00 40.51 3.13
131 132 7.565680 ACAGTAAAGAGACTTGAAGAAAGGAA 58.434 34.615 0.00 0.00 40.51 3.36
132 133 7.125792 ACAGTAAAGAGACTTGAAGAAAGGA 57.874 36.000 0.00 0.00 40.51 3.36
133 134 7.041712 GGAACAGTAAAGAGACTTGAAGAAAGG 60.042 40.741 0.00 0.00 40.51 3.11
134 135 7.041712 GGGAACAGTAAAGAGACTTGAAGAAAG 60.042 40.741 0.00 0.00 42.07 2.62
135 136 6.766467 GGGAACAGTAAAGAGACTTGAAGAAA 59.234 38.462 0.00 0.00 0.00 2.52
163 164 4.829518 GCGCGCAATTTCCGGTCC 62.830 66.667 29.10 0.00 0.00 4.46
182 183 3.209410 GAAGATTGCATCTGGGGTACTG 58.791 50.000 0.00 0.00 40.13 2.74
189 190 1.450531 GGCCCGAAGATTGCATCTGG 61.451 60.000 0.00 0.00 40.13 3.86
239 242 3.740832 GCAAAATTTCCACCCGAGAAAAG 59.259 43.478 0.00 0.00 36.83 2.27
259 262 2.356278 GGGCCTGTCCATGAAGCA 59.644 61.111 0.84 0.00 36.21 3.91
281 284 2.935201 CAGAGAATTCAGAGAAAGGCCG 59.065 50.000 8.44 0.00 0.00 6.13
301 304 6.878317 AGATACGGAAATCTCTTGTGATTCA 58.122 36.000 0.00 0.00 35.82 2.57
408 443 5.279256 GGAGGCAGAGACACTATAATCTTCC 60.279 48.000 0.00 0.00 0.00 3.46
411 446 4.809193 TGGAGGCAGAGACACTATAATCT 58.191 43.478 0.00 0.00 0.00 2.40
414 449 5.481824 CCATATGGAGGCAGAGACACTATAA 59.518 44.000 17.49 0.00 37.39 0.98
438 473 1.143401 GAATCCCTCGACCCGGAAC 59.857 63.158 0.73 0.00 0.00 3.62
442 477 0.460284 CAGTTGAATCCCTCGACCCG 60.460 60.000 0.00 0.00 39.06 5.28
571 606 6.907212 CCAAGCAGCAGTAGTAAATTAATTCG 59.093 38.462 0.10 0.00 0.00 3.34
638 673 0.883814 GAGGCCAGAATCCAGCATCG 60.884 60.000 5.01 0.00 0.00 3.84
697 732 6.862711 AGAACTCAAAAGTAACCAAGCTAC 57.137 37.500 0.00 0.00 33.48 3.58
698 733 8.208903 AGTAAGAACTCAAAAGTAACCAAGCTA 58.791 33.333 0.00 0.00 33.48 3.32
700 735 7.260558 AGTAAGAACTCAAAAGTAACCAAGC 57.739 36.000 0.00 0.00 33.48 4.01
701 736 8.889717 TCAAGTAAGAACTCAAAAGTAACCAAG 58.110 33.333 0.00 0.00 33.75 3.61
702 737 8.795842 TCAAGTAAGAACTCAAAAGTAACCAA 57.204 30.769 0.00 0.00 33.75 3.67
703 738 8.044908 ACTCAAGTAAGAACTCAAAAGTAACCA 58.955 33.333 0.00 0.00 33.75 3.67
705 740 9.704098 CAACTCAAGTAAGAACTCAAAAGTAAC 57.296 33.333 0.00 0.00 33.75 2.50
708 743 6.374333 TGCAACTCAAGTAAGAACTCAAAAGT 59.626 34.615 0.00 0.00 33.75 2.66
709 744 6.785191 TGCAACTCAAGTAAGAACTCAAAAG 58.215 36.000 0.00 0.00 33.75 2.27
848 883 8.882415 AAAAATATGAATAATGAAGCCTGCTG 57.118 30.769 0.00 0.00 0.00 4.41
892 927 4.632251 TGACACAACATAACTGAAACACGT 59.368 37.500 0.00 0.00 0.00 4.49
936 971 3.515901 TGTTGGTAAACCCTGCAAAAGTT 59.484 39.130 0.00 0.00 35.25 2.66
1032 1068 3.313526 CAGTTGTTTCTCCTTGTGACCAG 59.686 47.826 0.00 0.00 0.00 4.00
1071 1107 8.771766 GGGTATGAATATCTTCGAAAACTTACC 58.228 37.037 0.00 8.66 33.86 2.85
1176 1212 2.810852 CTCTTTCCAGGAACAGAACTGC 59.189 50.000 0.00 0.00 33.43 4.40
1202 1238 2.679082 GTGAATCTACTAGCTGGGGGA 58.321 52.381 0.85 0.00 0.00 4.81
1243 1279 2.118403 AACTCCCTGAGGAAAGTGGA 57.882 50.000 0.00 0.00 43.40 4.02
1244 1280 2.373502 AGAAACTCCCTGAGGAAAGTGG 59.626 50.000 0.00 0.00 43.40 4.00
1245 1281 3.181450 ACAGAAACTCCCTGAGGAAAGTG 60.181 47.826 0.00 0.00 43.40 3.16
1280 1316 5.869753 CGAAGGATATGGAACCATGATTC 57.130 43.478 15.59 12.03 37.82 2.52
1517 1553 2.684881 CGGCATATCTTCTGTTTGGCTT 59.315 45.455 0.00 0.00 0.00 4.35
1550 1586 1.406069 CCAGATCCTGTGGGAGTTTCG 60.406 57.143 0.00 0.00 45.86 3.46
1579 1615 5.243981 CAGCTCCTTCCACATAATCATAGG 58.756 45.833 0.00 0.00 0.00 2.57
1640 1676 1.482182 TCCTCGTCTTCATGGTCATGG 59.518 52.381 10.61 0.00 39.24 3.66
1753 1789 5.180492 TCAACAACGGTGGAATCTGAATTAC 59.820 40.000 4.97 0.00 0.00 1.89
1766 1802 2.126467 CCTGCATTTTCAACAACGGTG 58.874 47.619 0.00 0.00 0.00 4.94
1767 1803 1.754226 ACCTGCATTTTCAACAACGGT 59.246 42.857 0.00 0.00 0.00 4.83
1771 1807 3.450457 ACCAAGACCTGCATTTTCAACAA 59.550 39.130 0.00 0.00 0.00 2.83
1841 1883 3.583228 TCTAAGTCTGGGGTCTTTGTCA 58.417 45.455 0.00 0.00 0.00 3.58
1844 1886 5.059833 GCATATCTAAGTCTGGGGTCTTTG 58.940 45.833 0.00 0.00 0.00 2.77
1871 1913 9.581099 GTTTTGACCGATTTTGGTATTATCATT 57.419 29.630 0.00 0.00 44.01 2.57
1892 1934 1.950630 GCTGCCTGCAACGGTTTTG 60.951 57.895 0.00 0.00 42.31 2.44
2039 2090 6.969366 TCCAAAATAAACTGCCATATCATCG 58.031 36.000 0.00 0.00 0.00 3.84
2059 2110 7.665559 ACTGTGCATTAAAAAGAGAGTATCCAA 59.334 33.333 0.00 0.00 33.66 3.53
2172 2223 6.215845 GTTCAGGCAAAATGTGTTATGACTT 58.784 36.000 0.00 0.00 0.00 3.01
2174 2225 4.923281 GGTTCAGGCAAAATGTGTTATGAC 59.077 41.667 0.00 0.00 0.00 3.06
2175 2226 4.586421 TGGTTCAGGCAAAATGTGTTATGA 59.414 37.500 0.00 0.00 0.00 2.15
2176 2227 4.880759 TGGTTCAGGCAAAATGTGTTATG 58.119 39.130 0.00 0.00 0.00 1.90
2196 2248 0.804989 GAACCAGGCGTCTGAAATGG 59.195 55.000 20.91 4.31 43.49 3.16
2249 2301 3.990469 AGCTACAGACATTGTTCGTCTTG 59.010 43.478 0.00 0.00 41.80 3.02
2265 2317 1.347378 TGATGCCACACTTGAGCTACA 59.653 47.619 0.00 0.00 0.00 2.74
2304 2356 3.420214 TAATCCCGCGAGTCCGTGC 62.420 63.158 8.23 0.00 44.27 5.34
2316 2368 5.064071 CGAGAGCTTCTTTTTCTGTAATCCC 59.936 44.000 0.00 0.00 0.00 3.85
2382 2434 3.823873 GGATGCTTCTCTCCGATAGAAGA 59.176 47.826 21.76 10.90 40.01 2.87
2411 2466 1.339342 GGCTTCTTAACGGTTGCCCTA 60.339 52.381 3.07 0.00 34.81 3.53
2439 2494 3.775654 GCGTCCTGGGGTGGAGAG 61.776 72.222 0.00 0.00 36.69 3.20
2491 2546 2.253452 CTTGCTTCTGTGCACGCC 59.747 61.111 13.13 0.00 43.20 5.68
2534 2589 2.098443 GGAGCGTCTTTCAGAGGTAGAG 59.902 54.545 0.00 0.00 33.01 2.43
2537 2592 0.809385 CGGAGCGTCTTTCAGAGGTA 59.191 55.000 0.00 0.00 33.01 3.08
2553 2608 1.863662 GCACTTCCTCTGTCGACGGA 61.864 60.000 25.02 25.02 0.00 4.69
2558 2613 0.601046 TTGCTGCACTTCCTCTGTCG 60.601 55.000 0.00 0.00 0.00 4.35
2597 2652 2.181021 GTAGAGGGCCGACGTGTG 59.819 66.667 0.00 0.00 0.00 3.82
2631 2686 5.281314 AGTTCTCACACTATCCCTGGTAAT 58.719 41.667 0.00 0.00 0.00 1.89
2733 2788 6.861065 ATGTTAGTTCTGTTAACACTGGTG 57.139 37.500 3.59 0.00 42.06 4.17
2738 2793 8.988934 TCAGATGAATGTTAGTTCTGTTAACAC 58.011 33.333 3.59 0.00 42.06 3.32
2810 2874 1.533731 CACCATTACGCTTCCAACGTT 59.466 47.619 0.00 0.00 41.93 3.99
2849 2913 2.767394 AGAGTGCTCTGCATGAAGAGAT 59.233 45.455 31.67 17.32 45.59 2.75
2938 3002 2.941064 AGAGAATGCGTCAACATGATGG 59.059 45.455 0.00 0.00 34.08 3.51
3022 3086 5.132897 AGCATCTTTCGATCCTCTGATAC 57.867 43.478 0.00 0.00 0.00 2.24
3051 3115 3.600388 GCCTAGTTAAGTGACTGTGCAT 58.400 45.455 0.00 0.00 31.67 3.96
3077 3141 1.200948 GCCACTTGCAAGTCCATTCTC 59.799 52.381 28.97 9.30 40.77 2.87
3127 3191 6.982141 TCATAATACATTCCAGTAACACCGTC 59.018 38.462 0.00 0.00 0.00 4.79
3129 3193 7.042051 CCTTCATAATACATTCCAGTAACACCG 60.042 40.741 0.00 0.00 0.00 4.94
3130 3194 7.255139 GCCTTCATAATACATTCCAGTAACACC 60.255 40.741 0.00 0.00 0.00 4.16
3274 3343 5.694910 CGTTCTTTTGTGAAGCTTACCTCTA 59.305 40.000 0.00 0.00 0.00 2.43
3315 3386 4.675190 ATCGCAATATGCACAATCTAGC 57.325 40.909 2.99 0.00 45.36 3.42
3338 3409 4.022849 ACAAGTTTTGAGCAAGGCTATGTC 60.023 41.667 0.00 0.00 39.88 3.06
3348 3419 5.771153 TGATCATGAACAAGTTTTGAGCA 57.229 34.783 2.74 11.28 32.76 4.26
3384 3455 4.953940 AAAACATTAAGCTTTGAGGGCA 57.046 36.364 3.20 0.00 0.00 5.36
3404 3475 4.290711 TCACAGCTCTCAATCATGGAAA 57.709 40.909 0.00 0.00 0.00 3.13
3435 3506 8.164733 TGTTGAACCTACCATCCTTGTTATTTA 58.835 33.333 0.00 0.00 0.00 1.40
3473 3544 8.556213 TCAGTTGTTACCCACATAATTACTTC 57.444 34.615 0.00 0.00 34.43 3.01
3487 3558 4.251268 GACCCACTGTATCAGTTGTTACC 58.749 47.826 0.00 0.00 42.59 2.85
3504 3646 4.508405 CCCTCTAAATTCAAACAGGACCCA 60.508 45.833 0.00 0.00 0.00 4.51
3529 3671 2.827800 TGAGCAGGAGACAGAAACTG 57.172 50.000 0.00 0.00 37.52 3.16
3563 3705 3.307379 GAAGCAAGTTCCAGACCGT 57.693 52.632 0.00 0.00 0.00 4.83
3606 3748 4.181578 GCGCATTCATCGGTATTACCTAT 58.818 43.478 0.30 2.78 35.66 2.57
3627 3770 4.448060 GTGTGAGTACTACAAAGAACTGGC 59.552 45.833 0.00 0.00 0.00 4.85
3684 3827 6.176975 TGAATCATAACGTTTAGTTGCCTG 57.823 37.500 5.91 0.00 44.01 4.85
3715 3860 3.188254 TGCCAGTCAACAACACGATAATG 59.812 43.478 0.00 0.00 0.00 1.90
3725 3870 0.254462 TGGTGAGTGCCAGTCAACAA 59.746 50.000 17.71 1.97 41.89 2.83
3740 3885 5.359009 AGGAATAATTGCAGAGATTGTGGTG 59.641 40.000 0.00 0.00 0.00 4.17
3875 4020 0.249955 TGTGGATGCTCGAGATTGCA 59.750 50.000 18.75 10.88 43.67 4.08
3919 4064 0.954452 CTGGACTTGGTGTTTCCTGC 59.046 55.000 0.00 0.00 37.07 4.85
3979 4124 4.862371 GGGGGAAGTGTCAATATGGTTAA 58.138 43.478 0.00 0.00 0.00 2.01
4054 4199 4.983671 ATGTCAGCGTGTATTCTACAGA 57.016 40.909 0.00 0.00 39.77 3.41
4059 4204 6.037172 GTGGATAAAATGTCAGCGTGTATTCT 59.963 38.462 0.00 0.00 0.00 2.40
4064 4209 3.674997 AGTGGATAAAATGTCAGCGTGT 58.325 40.909 0.00 0.00 0.00 4.49
4067 4212 3.186909 TCGAGTGGATAAAATGTCAGCG 58.813 45.455 0.00 0.00 0.00 5.18
4123 4268 2.078914 CGTTGTTCTCGACGGACGG 61.079 63.158 0.00 0.00 44.81 4.79
4156 4301 1.078848 ACCAACTGATGAGCCGCTC 60.079 57.895 13.81 13.81 0.00 5.03
4217 4362 9.599322 GATGCGATATAAACACCAAGATAAAAG 57.401 33.333 0.00 0.00 0.00 2.27
4237 4382 4.786507 CTTTTTCAGTGTTCATGATGCGA 58.213 39.130 0.00 0.00 0.00 5.10
4238 4383 3.362831 GCTTTTTCAGTGTTCATGATGCG 59.637 43.478 0.00 0.00 0.00 4.73
4239 4384 3.676646 GGCTTTTTCAGTGTTCATGATGC 59.323 43.478 0.00 0.00 0.00 3.91
4261 4406 2.907910 GCTTGTGCTGACATAAGGTG 57.092 50.000 4.98 0.00 43.23 4.00
4273 4418 1.946768 TGGTGTTTGAGTAGCTTGTGC 59.053 47.619 0.00 0.00 40.05 4.57
4327 4472 1.275856 CATTGGACATTTGGGTGGTGG 59.724 52.381 0.00 0.00 0.00 4.61
4328 4473 1.338011 GCATTGGACATTTGGGTGGTG 60.338 52.381 0.00 0.00 0.00 4.17
4329 4474 0.975887 GCATTGGACATTTGGGTGGT 59.024 50.000 0.00 0.00 0.00 4.16
4405 4555 1.713830 GCAGATCCACCGTTTACGC 59.286 57.895 0.00 0.00 38.18 4.42
4407 4557 1.087771 CCCGCAGATCCACCGTTTAC 61.088 60.000 0.00 0.00 0.00 2.01
4433 4583 3.613737 GCTTTTAGATGCGTGTAACCGTA 59.386 43.478 0.00 0.00 0.00 4.02
4436 4586 3.435671 AGTGCTTTTAGATGCGTGTAACC 59.564 43.478 0.00 0.00 0.00 2.85
4439 4589 2.415168 GCAGTGCTTTTAGATGCGTGTA 59.585 45.455 8.18 0.00 0.00 2.90
4442 4594 1.197721 GTGCAGTGCTTTTAGATGCGT 59.802 47.619 17.60 0.00 39.74 5.24
4470 4622 1.598676 CGATGAAATTGGATGGCGCAG 60.599 52.381 10.83 0.00 0.00 5.18
4471 4623 0.381445 CGATGAAATTGGATGGCGCA 59.619 50.000 10.83 0.00 0.00 6.09
4487 4639 5.293569 TCGATACGCATAGACATCATACGAT 59.706 40.000 0.00 0.00 0.00 3.73
4493 4645 2.882137 TGGTCGATACGCATAGACATCA 59.118 45.455 10.52 0.00 38.23 3.07
4499 4651 2.034179 TGGAAGTGGTCGATACGCATAG 59.966 50.000 6.44 0.00 0.00 2.23
4501 4653 0.821517 TGGAAGTGGTCGATACGCAT 59.178 50.000 6.44 0.00 0.00 4.73
4512 4664 0.038744 AGGGTGCTTGATGGAAGTGG 59.961 55.000 0.00 0.00 33.73 4.00
4515 4667 2.295885 GATGAGGGTGCTTGATGGAAG 58.704 52.381 0.00 0.00 34.41 3.46
4538 4690 6.090898 ACGATATTCTTGAAACTGAACGAAGG 59.909 38.462 0.00 0.00 0.00 3.46
4551 4703 5.133941 AGGAGCTACAGACGATATTCTTGA 58.866 41.667 0.00 0.00 0.00 3.02
4597 4749 4.098044 CGTATTCACTAGTGGTCAGTGGAT 59.902 45.833 22.48 0.60 43.31 3.41
4598 4750 3.442625 CGTATTCACTAGTGGTCAGTGGA 59.557 47.826 22.48 0.00 42.98 4.02
4599 4751 3.192844 ACGTATTCACTAGTGGTCAGTGG 59.807 47.826 22.48 8.91 42.98 4.00
4600 4752 4.436242 ACGTATTCACTAGTGGTCAGTG 57.564 45.455 22.48 10.88 43.92 3.66
4601 4753 4.093998 CGTACGTATTCACTAGTGGTCAGT 59.906 45.833 22.48 16.97 0.00 3.41
4602 4754 4.093998 ACGTACGTATTCACTAGTGGTCAG 59.906 45.833 21.41 12.57 0.00 3.51
4603 4755 4.002982 ACGTACGTATTCACTAGTGGTCA 58.997 43.478 21.41 7.82 0.00 4.02
4604 4756 4.606457 ACGTACGTATTCACTAGTGGTC 57.394 45.455 21.41 9.59 0.00 4.02
4609 4761 7.171447 AGCTAAGTACGTACGTATTCACTAG 57.829 40.000 29.05 22.04 32.82 2.57
4655 4807 0.461961 CGACCCCCTGCAAACAAAAA 59.538 50.000 0.00 0.00 0.00 1.94
4656 4808 0.684805 ACGACCCCCTGCAAACAAAA 60.685 50.000 0.00 0.00 0.00 2.44
4657 4809 1.076632 ACGACCCCCTGCAAACAAA 60.077 52.632 0.00 0.00 0.00 2.83
4658 4810 1.527380 GACGACCCCCTGCAAACAA 60.527 57.895 0.00 0.00 0.00 2.83
4659 4811 2.112297 GACGACCCCCTGCAAACA 59.888 61.111 0.00 0.00 0.00 2.83
4660 4812 2.671963 GGACGACCCCCTGCAAAC 60.672 66.667 0.00 0.00 0.00 2.93
4661 4813 2.690653 CTTGGACGACCCCCTGCAAA 62.691 60.000 0.34 0.00 34.81 3.68
4662 4814 3.172106 TTGGACGACCCCCTGCAA 61.172 61.111 0.34 0.00 34.81 4.08
4663 4815 3.636231 CTTGGACGACCCCCTGCA 61.636 66.667 0.34 0.00 34.81 4.41
4664 4816 4.410400 CCTTGGACGACCCCCTGC 62.410 72.222 0.34 0.00 34.81 4.85
4665 4817 3.717294 CCCTTGGACGACCCCCTG 61.717 72.222 0.34 0.00 34.81 4.45
4666 4818 3.936566 TCCCTTGGACGACCCCCT 61.937 66.667 0.34 0.00 34.81 4.79
4667 4819 3.714001 GTCCCTTGGACGACCCCC 61.714 72.222 0.34 0.00 43.14 5.40
4675 4827 3.314693 ACACTGTTCTAAGTCCCTTGGA 58.685 45.455 0.00 0.00 0.00 3.53
4676 4828 3.771577 ACACTGTTCTAAGTCCCTTGG 57.228 47.619 0.00 0.00 0.00 3.61
4677 4829 7.036220 CAGTATACACTGTTCTAAGTCCCTTG 58.964 42.308 5.50 0.00 46.03 3.61
4678 4830 7.171630 CAGTATACACTGTTCTAAGTCCCTT 57.828 40.000 5.50 0.00 46.03 3.95
4679 4831 6.777213 CAGTATACACTGTTCTAAGTCCCT 57.223 41.667 5.50 0.00 46.03 4.20
4718 4872 1.346722 TCTTCCTGTCCCGAGGTTTTC 59.653 52.381 0.00 0.00 34.36 2.29
4719 4873 1.430992 TCTTCCTGTCCCGAGGTTTT 58.569 50.000 0.00 0.00 34.36 2.43
4723 4915 1.279271 ACATTTCTTCCTGTCCCGAGG 59.721 52.381 0.00 0.00 0.00 4.63
4724 4916 2.350522 CACATTTCTTCCTGTCCCGAG 58.649 52.381 0.00 0.00 0.00 4.63
4728 4920 1.909700 TGCCACATTTCTTCCTGTCC 58.090 50.000 0.00 0.00 0.00 4.02
4729 4921 2.821969 ACATGCCACATTTCTTCCTGTC 59.178 45.455 0.00 0.00 0.00 3.51
4731 4923 2.165030 GGACATGCCACATTTCTTCCTG 59.835 50.000 0.00 0.00 36.34 3.86
4761 4954 8.913487 ATGGTGATATATATATGCCACACATG 57.087 34.615 19.82 0.00 40.06 3.21
4803 4996 3.717899 CATGGCATGGACGTACGG 58.282 61.111 21.06 1.82 0.00 4.02
4809 5002 6.738650 AAATGCAATTCCCATGGCATGGAC 62.739 45.833 41.10 24.01 45.14 4.02
4810 5003 4.713990 AAATGCAATTCCCATGGCATGGA 61.714 43.478 41.10 26.29 45.14 3.41
4811 5004 1.142060 AATGCAATTCCCATGGCATGG 59.858 47.619 34.76 34.76 45.52 3.66
4812 5005 2.616376 CAAATGCAATTCCCATGGCATG 59.384 45.455 20.56 20.56 45.52 4.06
4814 5007 1.679336 GCAAATGCAATTCCCATGGCA 60.679 47.619 6.09 0.00 41.59 4.92
4815 5008 1.018910 GCAAATGCAATTCCCATGGC 58.981 50.000 6.09 0.00 41.59 4.40
4828 5021 4.413969 TCATGAACTAACGCATGCAAATG 58.586 39.130 19.57 7.33 41.18 2.32
4830 5023 3.750652 TCTCATGAACTAACGCATGCAAA 59.249 39.130 19.57 0.59 41.18 3.68
4839 5032 7.760340 ACCGTCTCTATTTTCTCATGAACTAAC 59.240 37.037 0.00 0.00 31.02 2.34
4853 5046 1.676014 GCTGTGGCACCGTCTCTATTT 60.676 52.381 16.26 0.00 38.54 1.40
4855 5048 1.257750 TGCTGTGGCACCGTCTCTAT 61.258 55.000 16.26 0.00 44.28 1.98
4857 5050 3.231889 CTGCTGTGGCACCGTCTCT 62.232 63.158 16.26 0.00 44.28 3.10
4858 5051 2.740055 CTGCTGTGGCACCGTCTC 60.740 66.667 16.26 0.12 44.28 3.36
4860 5053 4.626081 ACCTGCTGTGGCACCGTC 62.626 66.667 16.26 5.90 44.28 4.79
4864 5057 1.376037 GTAGGACCTGCTGTGGCAC 60.376 63.158 11.55 11.55 44.28 5.01
4867 5060 2.283529 ACGGTAGGACCTGCTGTGG 61.284 63.158 21.95 6.18 34.57 4.17
4871 5064 2.341101 CGTCACGGTAGGACCTGCT 61.341 63.158 9.65 0.00 35.66 4.24
4872 5065 2.181021 CGTCACGGTAGGACCTGC 59.819 66.667 3.53 1.66 35.66 4.85
4873 5066 2.882876 CCGTCACGGTAGGACCTG 59.117 66.667 8.54 0.00 42.73 4.00
4885 5078 0.824109 CTAAGATCCACTGGCCGTCA 59.176 55.000 0.00 0.00 0.00 4.35
4894 5087 0.595310 GAGCGCGTCCTAAGATCCAC 60.595 60.000 8.43 0.00 0.00 4.02
4901 5094 0.606604 AGGAAAAGAGCGCGTCCTAA 59.393 50.000 11.60 0.00 38.76 2.69
4909 5102 2.047274 TGGGCGAGGAAAAGAGCG 60.047 61.111 0.00 0.00 0.00 5.03
4954 5154 3.849951 ACCATCGCCTACTGCCGG 61.850 66.667 0.00 0.00 36.24 6.13
4955 5155 2.586079 CACCATCGCCTACTGCCG 60.586 66.667 0.00 0.00 36.24 5.69
4964 5164 3.221389 ATGGCATGGCACCATCGC 61.221 61.111 25.84 7.29 44.85 4.58
4965 5165 2.725641 CATGGCATGGCACCATCG 59.274 61.111 25.84 7.07 44.85 3.84
4966 5166 3.134879 CCATGGCATGGCACCATC 58.865 61.111 31.96 0.00 44.85 3.51
4974 5174 1.140312 AGGGGTACTACCATGGCATG 58.860 55.000 20.56 20.56 41.02 4.06
4975 5175 1.140312 CAGGGGTACTACCATGGCAT 58.860 55.000 13.04 0.00 41.02 4.40
4979 5179 0.179084 CGTGCAGGGGTACTACCATG 60.179 60.000 7.57 6.47 44.74 3.66
5008 5215 2.636412 GCTTTCCCTTCGCAACCCC 61.636 63.158 0.00 0.00 0.00 4.95
5010 5217 2.962569 GGCTTTCCCTTCGCAACC 59.037 61.111 0.00 0.00 0.00 3.77
5058 5266 2.193536 GGCGTTCCACAGGCTTGTT 61.194 57.895 0.00 0.00 34.62 2.83
5068 5276 0.389817 CAACGAGATGAGGCGTTCCA 60.390 55.000 0.00 0.00 46.51 3.53
5070 5278 0.716108 CACAACGAGATGAGGCGTTC 59.284 55.000 0.00 0.00 46.51 3.95
5075 5283 3.919216 AGAGAAACACAACGAGATGAGG 58.081 45.455 0.00 0.00 0.00 3.86
5076 5284 3.605916 CGAGAGAAACACAACGAGATGAG 59.394 47.826 0.00 0.00 0.00 2.90
5077 5285 3.565516 CGAGAGAAACACAACGAGATGA 58.434 45.455 0.00 0.00 0.00 2.92
5078 5286 2.663602 CCGAGAGAAACACAACGAGATG 59.336 50.000 0.00 0.00 0.00 2.90
5079 5287 2.557056 TCCGAGAGAAACACAACGAGAT 59.443 45.455 0.00 0.00 0.00 2.75
5080 5288 1.951602 TCCGAGAGAAACACAACGAGA 59.048 47.619 0.00 0.00 0.00 4.04
5081 5289 2.417339 TCCGAGAGAAACACAACGAG 57.583 50.000 0.00 0.00 0.00 4.18
5082 5290 2.875087 TTCCGAGAGAAACACAACGA 57.125 45.000 0.00 0.00 0.00 3.85
5083 5291 3.936902 TTTTCCGAGAGAAACACAACG 57.063 42.857 0.00 0.00 44.20 4.10
5084 5292 4.334481 TCCTTTTTCCGAGAGAAACACAAC 59.666 41.667 0.00 0.00 44.20 3.32
5085 5293 4.519213 TCCTTTTTCCGAGAGAAACACAA 58.481 39.130 0.00 0.00 44.20 3.33
5086 5294 4.145365 TCCTTTTTCCGAGAGAAACACA 57.855 40.909 0.00 0.00 44.20 3.72
5087 5295 4.755123 TCATCCTTTTTCCGAGAGAAACAC 59.245 41.667 0.00 0.00 44.20 3.32
5088 5296 4.968259 TCATCCTTTTTCCGAGAGAAACA 58.032 39.130 0.00 0.00 44.20 2.83
5089 5297 6.149474 TCAATCATCCTTTTTCCGAGAGAAAC 59.851 38.462 0.00 0.00 44.20 2.78
5090 5298 6.237901 TCAATCATCCTTTTTCCGAGAGAAA 58.762 36.000 0.00 0.00 42.82 2.52
5091 5299 5.804639 TCAATCATCCTTTTTCCGAGAGAA 58.195 37.500 0.00 0.00 0.00 2.87
5092 5300 5.420725 TCAATCATCCTTTTTCCGAGAGA 57.579 39.130 0.00 0.00 0.00 3.10
5093 5301 5.819379 TGATCAATCATCCTTTTTCCGAGAG 59.181 40.000 0.00 0.00 0.00 3.20
5094 5302 5.744171 TGATCAATCATCCTTTTTCCGAGA 58.256 37.500 0.00 0.00 0.00 4.04
5095 5303 6.630444 ATGATCAATCATCCTTTTTCCGAG 57.370 37.500 0.00 0.00 43.72 4.63
5108 5316 6.311200 CACAGTTCTACAACGATGATCAATCA 59.689 38.462 0.00 0.00 38.19 2.57
5109 5317 6.531594 TCACAGTTCTACAACGATGATCAATC 59.468 38.462 0.00 0.00 37.61 2.67
5110 5318 6.398095 TCACAGTTCTACAACGATGATCAAT 58.602 36.000 0.00 0.00 37.61 2.57
5111 5319 5.778862 TCACAGTTCTACAACGATGATCAA 58.221 37.500 0.00 0.00 37.61 2.57
5112 5320 5.385509 TCACAGTTCTACAACGATGATCA 57.614 39.130 0.00 0.00 37.61 2.92
5113 5321 5.062308 GGTTCACAGTTCTACAACGATGATC 59.938 44.000 0.00 0.00 37.61 2.92
5114 5322 4.929808 GGTTCACAGTTCTACAACGATGAT 59.070 41.667 0.00 0.00 37.61 2.45
5115 5323 4.202172 TGGTTCACAGTTCTACAACGATGA 60.202 41.667 0.00 0.00 37.61 2.92
5116 5324 4.055360 TGGTTCACAGTTCTACAACGATG 58.945 43.478 0.00 0.00 37.61 3.84
5117 5325 4.307432 CTGGTTCACAGTTCTACAACGAT 58.693 43.478 0.00 0.00 42.42 3.73
5118 5326 3.713288 CTGGTTCACAGTTCTACAACGA 58.287 45.455 0.00 0.00 42.42 3.85
5130 5338 0.545309 CCCCTCTCCTCTGGTTCACA 60.545 60.000 0.00 0.00 0.00 3.58
5131 5339 1.904990 GCCCCTCTCCTCTGGTTCAC 61.905 65.000 0.00 0.00 0.00 3.18
5132 5340 1.613630 GCCCCTCTCCTCTGGTTCA 60.614 63.158 0.00 0.00 0.00 3.18
5133 5341 2.726351 CGCCCCTCTCCTCTGGTTC 61.726 68.421 0.00 0.00 0.00 3.62
5134 5342 2.685380 CGCCCCTCTCCTCTGGTT 60.685 66.667 0.00 0.00 0.00 3.67
5135 5343 3.999285 ACGCCCCTCTCCTCTGGT 61.999 66.667 0.00 0.00 0.00 4.00
5136 5344 3.465403 CACGCCCCTCTCCTCTGG 61.465 72.222 0.00 0.00 0.00 3.86
5137 5345 4.154347 GCACGCCCCTCTCCTCTG 62.154 72.222 0.00 0.00 0.00 3.35
5138 5346 4.704103 TGCACGCCCCTCTCCTCT 62.704 66.667 0.00 0.00 0.00 3.69
5139 5347 4.459089 GTGCACGCCCCTCTCCTC 62.459 72.222 0.00 0.00 0.00 3.71
5142 5350 3.755628 TACGTGCACGCCCCTCTC 61.756 66.667 37.35 0.00 44.43 3.20
5143 5351 4.065281 GTACGTGCACGCCCCTCT 62.065 66.667 37.35 20.23 44.43 3.69
5144 5352 4.367023 TGTACGTGCACGCCCCTC 62.367 66.667 37.35 22.19 44.43 4.30
5145 5353 4.373116 CTGTACGTGCACGCCCCT 62.373 66.667 37.35 21.37 44.43 4.79
5156 5364 1.138047 GGTCGATCCAACGCTGTACG 61.138 60.000 0.00 0.00 41.41 3.67
5157 5365 0.172803 AGGTCGATCCAACGCTGTAC 59.827 55.000 0.00 0.00 39.02 2.90
5158 5366 1.402968 GTAGGTCGATCCAACGCTGTA 59.597 52.381 0.00 0.00 39.02 2.74
5159 5367 0.172803 GTAGGTCGATCCAACGCTGT 59.827 55.000 0.00 0.00 39.02 4.40
5160 5368 0.527817 GGTAGGTCGATCCAACGCTG 60.528 60.000 0.00 0.00 39.02 5.18
5161 5369 1.673808 GGGTAGGTCGATCCAACGCT 61.674 60.000 8.16 0.00 39.02 5.07
5162 5370 1.227176 GGGTAGGTCGATCCAACGC 60.227 63.158 0.00 0.00 39.02 4.84
5163 5371 0.822164 AAGGGTAGGTCGATCCAACG 59.178 55.000 0.00 0.00 39.02 4.10
5164 5372 3.345508 AAAAGGGTAGGTCGATCCAAC 57.654 47.619 0.00 0.00 39.02 3.77
5191 5399 0.606673 GGCAACAGAGGGTCAGTTCC 60.607 60.000 0.00 0.00 0.00 3.62
5192 5400 0.108585 TGGCAACAGAGGGTCAGTTC 59.891 55.000 0.00 0.00 46.17 3.01
5193 5401 2.230664 TGGCAACAGAGGGTCAGTT 58.769 52.632 0.00 0.00 46.17 3.16
5194 5402 3.986054 TGGCAACAGAGGGTCAGT 58.014 55.556 0.00 0.00 46.17 3.41
5205 5413 1.134521 TCGGATGGAGTACATGGCAAC 60.135 52.381 0.00 0.00 40.72 4.17
5206 5414 1.199615 TCGGATGGAGTACATGGCAA 58.800 50.000 0.00 0.00 40.72 4.52
5207 5415 1.344438 GATCGGATGGAGTACATGGCA 59.656 52.381 0.00 0.00 40.72 4.92
5208 5416 1.338200 GGATCGGATGGAGTACATGGC 60.338 57.143 0.00 0.00 40.72 4.40
5209 5417 2.251818 AGGATCGGATGGAGTACATGG 58.748 52.381 0.00 0.00 40.72 3.66
5210 5418 4.342862 AAAGGATCGGATGGAGTACATG 57.657 45.455 0.00 0.00 40.72 3.21
5211 5419 5.373812 AAAAAGGATCGGATGGAGTACAT 57.626 39.130 0.00 0.00 44.18 2.29
5212 5420 4.837093 AAAAAGGATCGGATGGAGTACA 57.163 40.909 0.00 0.00 0.00 2.90
5213 5421 5.915175 AGTAAAAAGGATCGGATGGAGTAC 58.085 41.667 0.00 0.00 0.00 2.73
5214 5422 5.070047 GGAGTAAAAAGGATCGGATGGAGTA 59.930 44.000 0.00 0.00 0.00 2.59
5215 5423 4.141688 GGAGTAAAAAGGATCGGATGGAGT 60.142 45.833 0.00 0.00 0.00 3.85
5216 5424 4.141711 TGGAGTAAAAAGGATCGGATGGAG 60.142 45.833 0.00 0.00 0.00 3.86
5217 5425 3.778075 TGGAGTAAAAAGGATCGGATGGA 59.222 43.478 0.00 0.00 0.00 3.41
5218 5426 3.877508 GTGGAGTAAAAAGGATCGGATGG 59.122 47.826 0.00 0.00 0.00 3.51
5219 5427 4.332819 GTGTGGAGTAAAAAGGATCGGATG 59.667 45.833 0.00 0.00 0.00 3.51
5220 5428 4.019681 TGTGTGGAGTAAAAAGGATCGGAT 60.020 41.667 0.00 0.00 0.00 4.18
5221 5429 3.325425 TGTGTGGAGTAAAAAGGATCGGA 59.675 43.478 0.00 0.00 0.00 4.55
5222 5430 3.670625 TGTGTGGAGTAAAAAGGATCGG 58.329 45.455 0.00 0.00 0.00 4.18
5223 5431 5.880054 AATGTGTGGAGTAAAAAGGATCG 57.120 39.130 0.00 0.00 0.00 3.69
5224 5432 8.336801 AGTTAATGTGTGGAGTAAAAAGGATC 57.663 34.615 0.00 0.00 0.00 3.36
5225 5433 8.706322 AAGTTAATGTGTGGAGTAAAAAGGAT 57.294 30.769 0.00 0.00 0.00 3.24
5226 5434 8.410141 CAAAGTTAATGTGTGGAGTAAAAAGGA 58.590 33.333 0.00 0.00 0.00 3.36
5227 5435 8.194769 ACAAAGTTAATGTGTGGAGTAAAAAGG 58.805 33.333 0.00 0.00 0.00 3.11
5228 5436 9.233232 GACAAAGTTAATGTGTGGAGTAAAAAG 57.767 33.333 0.00 0.00 0.00 2.27
5229 5437 8.962679 AGACAAAGTTAATGTGTGGAGTAAAAA 58.037 29.630 0.00 0.00 0.00 1.94
5230 5438 8.402472 CAGACAAAGTTAATGTGTGGAGTAAAA 58.598 33.333 0.00 0.00 38.14 1.52
5231 5439 7.771361 TCAGACAAAGTTAATGTGTGGAGTAAA 59.229 33.333 5.32 0.00 41.10 2.01
5232 5440 7.276658 TCAGACAAAGTTAATGTGTGGAGTAA 58.723 34.615 5.32 0.00 41.10 2.24
5233 5441 6.822442 TCAGACAAAGTTAATGTGTGGAGTA 58.178 36.000 5.32 0.00 41.10 2.59
5234 5442 5.680619 TCAGACAAAGTTAATGTGTGGAGT 58.319 37.500 5.32 0.00 41.10 3.85
5235 5443 6.618287 TTCAGACAAAGTTAATGTGTGGAG 57.382 37.500 5.32 0.00 41.10 3.86
5236 5444 7.581213 ATTTCAGACAAAGTTAATGTGTGGA 57.419 32.000 5.32 0.00 41.10 4.02
5263 5471 9.768215 ATCCATTTCGGGGTATATTTTCATATT 57.232 29.630 0.00 0.00 34.36 1.28
5264 5472 9.408648 GATCCATTTCGGGGTATATTTTCATAT 57.591 33.333 0.00 0.00 34.36 1.78
5265 5473 8.611257 AGATCCATTTCGGGGTATATTTTCATA 58.389 33.333 0.00 0.00 34.36 2.15
5266 5474 7.470192 AGATCCATTTCGGGGTATATTTTCAT 58.530 34.615 0.00 0.00 34.36 2.57
5267 5475 6.848069 AGATCCATTTCGGGGTATATTTTCA 58.152 36.000 0.00 0.00 34.36 2.69
5268 5476 8.857694 TTAGATCCATTTCGGGGTATATTTTC 57.142 34.615 0.00 0.00 34.36 2.29
5276 5484 9.243105 CATTTATTATTAGATCCATTTCGGGGT 57.757 33.333 0.00 0.00 34.36 4.95
5277 5485 9.243105 ACATTTATTATTAGATCCATTTCGGGG 57.757 33.333 0.00 0.00 34.36 5.73
5342 5550 9.559732 TCTGAAGTCAATCTCATTCAACTTTAA 57.440 29.630 0.00 0.00 31.70 1.52
5343 5551 8.993121 GTCTGAAGTCAATCTCATTCAACTTTA 58.007 33.333 0.00 0.00 31.70 1.85
5344 5552 7.500227 TGTCTGAAGTCAATCTCATTCAACTTT 59.500 33.333 0.00 0.00 31.70 2.66
5345 5553 6.994496 TGTCTGAAGTCAATCTCATTCAACTT 59.006 34.615 0.00 0.00 31.70 2.66
5346 5554 6.528321 TGTCTGAAGTCAATCTCATTCAACT 58.472 36.000 0.00 0.00 31.70 3.16
5347 5555 6.791887 TGTCTGAAGTCAATCTCATTCAAC 57.208 37.500 0.00 0.00 31.70 3.18
5348 5556 7.255242 GGTTTGTCTGAAGTCAATCTCATTCAA 60.255 37.037 0.00 0.00 31.70 2.69
5349 5557 6.205464 GGTTTGTCTGAAGTCAATCTCATTCA 59.795 38.462 0.00 0.00 0.00 2.57
5350 5558 6.429385 AGGTTTGTCTGAAGTCAATCTCATTC 59.571 38.462 0.00 0.00 0.00 2.67
5351 5559 6.302269 AGGTTTGTCTGAAGTCAATCTCATT 58.698 36.000 0.00 0.00 0.00 2.57
5352 5560 5.874093 AGGTTTGTCTGAAGTCAATCTCAT 58.126 37.500 0.00 0.00 0.00 2.90
5353 5561 5.296151 AGGTTTGTCTGAAGTCAATCTCA 57.704 39.130 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.