Multiple sequence alignment - TraesCS3A01G404600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G404600 chr3A 100.000 5017 0 0 1 5017 649604494 649609510 0.000000e+00 9265.0
1 TraesCS3A01G404600 chr3B 95.427 3193 132 6 991 4183 677313191 677316369 0.000000e+00 5075.0
2 TraesCS3A01G404600 chr3B 89.467 807 32 15 4187 4971 600902492 600901717 0.000000e+00 970.0
3 TraesCS3A01G404600 chr3B 83.372 854 63 28 4187 4971 701280748 701279905 0.000000e+00 717.0
4 TraesCS3A01G404600 chr3B 91.765 170 11 3 822 991 677312018 677312184 3.020000e-57 233.0
5 TraesCS3A01G404600 chr3D 94.730 3207 145 10 991 4187 514919638 514922830 0.000000e+00 4964.0
6 TraesCS3A01G404600 chr3D 95.082 244 12 0 748 991 514918887 514919130 7.880000e-103 385.0
7 TraesCS3A01G404600 chr3D 90.323 93 6 1 288 380 514918659 514918748 8.820000e-23 119.0
8 TraesCS3A01G404600 chr3D 92.157 51 3 1 650 700 514918818 514918867 2.510000e-08 71.3
9 TraesCS3A01G404600 chr7A 96.568 845 15 3 4187 5017 690059880 690060724 0.000000e+00 1387.0
10 TraesCS3A01G404600 chr1A 95.858 845 21 2 4187 5017 84062049 84061205 0.000000e+00 1354.0
11 TraesCS3A01G404600 chr1A 95.740 845 22 3 4187 5017 63560011 63559167 0.000000e+00 1349.0
12 TraesCS3A01G404600 chr7D 94.591 795 29 4 4187 4971 531754516 531753726 0.000000e+00 1218.0
13 TraesCS3A01G404600 chr4A 85.781 851 48 26 4187 4968 742646800 742647646 0.000000e+00 833.0
14 TraesCS3A01G404600 chr4A 85.595 840 49 26 4191 4968 652864372 652865201 0.000000e+00 815.0
15 TraesCS3A01G404600 chr4A 97.936 436 9 0 4582 5017 572941706 572942141 0.000000e+00 756.0
16 TraesCS3A01G404600 chr4A 85.088 114 16 1 536 648 469239495 469239382 1.140000e-21 115.0
17 TraesCS3A01G404600 chr4B 85.315 858 44 23 4187 4968 624023743 624024594 0.000000e+00 811.0
18 TraesCS3A01G404600 chr4B 94.000 200 5 2 435 633 658213581 658213774 3.800000e-76 296.0
19 TraesCS3A01G404600 chr6D 90.750 573 21 6 4187 4739 61756954 61757514 0.000000e+00 736.0
20 TraesCS3A01G404600 chr6D 89.954 219 11 2 4764 4971 61757718 61757936 6.400000e-69 272.0
21 TraesCS3A01G404600 chr5D 81.379 145 22 4 506 649 70394798 70394938 4.110000e-21 113.0
22 TraesCS3A01G404600 chr5D 86.517 89 11 1 561 649 70394407 70394320 4.130000e-16 97.1
23 TraesCS3A01G404600 chr5D 91.071 56 5 0 179 234 408345886 408345831 5.390000e-10 76.8
24 TraesCS3A01G404600 chr2D 87.629 97 12 0 553 649 9382503 9382599 4.110000e-21 113.0
25 TraesCS3A01G404600 chr2B 86.957 92 10 2 561 651 250533853 250533763 8.890000e-18 102.0
26 TraesCS3A01G404600 chr6A 90.698 43 4 0 177 219 573145688 573145646 1.950000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G404600 chr3A 649604494 649609510 5016 False 9265.000 9265 100.000 1 5017 1 chr3A.!!$F1 5016
1 TraesCS3A01G404600 chr3B 677312018 677316369 4351 False 2654.000 5075 93.596 822 4183 2 chr3B.!!$F1 3361
2 TraesCS3A01G404600 chr3B 600901717 600902492 775 True 970.000 970 89.467 4187 4971 1 chr3B.!!$R1 784
3 TraesCS3A01G404600 chr3B 701279905 701280748 843 True 717.000 717 83.372 4187 4971 1 chr3B.!!$R2 784
4 TraesCS3A01G404600 chr3D 514918659 514922830 4171 False 1384.825 4964 93.073 288 4187 4 chr3D.!!$F1 3899
5 TraesCS3A01G404600 chr7A 690059880 690060724 844 False 1387.000 1387 96.568 4187 5017 1 chr7A.!!$F1 830
6 TraesCS3A01G404600 chr1A 84061205 84062049 844 True 1354.000 1354 95.858 4187 5017 1 chr1A.!!$R2 830
7 TraesCS3A01G404600 chr1A 63559167 63560011 844 True 1349.000 1349 95.740 4187 5017 1 chr1A.!!$R1 830
8 TraesCS3A01G404600 chr7D 531753726 531754516 790 True 1218.000 1218 94.591 4187 4971 1 chr7D.!!$R1 784
9 TraesCS3A01G404600 chr4A 742646800 742647646 846 False 833.000 833 85.781 4187 4968 1 chr4A.!!$F3 781
10 TraesCS3A01G404600 chr4A 652864372 652865201 829 False 815.000 815 85.595 4191 4968 1 chr4A.!!$F2 777
11 TraesCS3A01G404600 chr4B 624023743 624024594 851 False 811.000 811 85.315 4187 4968 1 chr4B.!!$F1 781
12 TraesCS3A01G404600 chr6D 61756954 61757936 982 False 504.000 736 90.352 4187 4971 2 chr6D.!!$F1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 633 0.105593 CTGGTCGATGGGGTCTCATG 59.894 60.000 0.0 0.0 0.0 3.07 F
908 932 0.110644 GTGCTTCAGTTTTCCTCGCG 60.111 55.000 0.0 0.0 0.0 5.87 F
1392 2438 0.389948 GCTACCGAGTCCCTGTGTTG 60.390 60.000 0.0 0.0 0.0 3.33 F
2813 3859 0.333993 AGGTTGGCATCATTGGAGCT 59.666 50.000 0.0 0.0 0.0 4.09 F
3783 4829 1.269988 CGGTCATGGGAGATGTAGCAG 60.270 57.143 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2589 3635 0.103390 TCGAGTTTGGCAGACGACAA 59.897 50.0 2.18 0.0 38.83 3.18 R
2813 3859 0.559205 TTATAGGAGGCAGACCCCGA 59.441 55.0 0.00 0.0 36.11 5.14 R
2999 4045 0.038744 ACTCTTCCACCTGGGCATTG 59.961 55.0 0.00 0.0 36.21 2.82 R
3904 4950 0.527817 GTAGAGTCCAACCATCGCGG 60.528 60.0 6.13 0.0 42.50 6.46 R
4809 6091 3.128349 CCTACCCGGTGATAATTGTTCG 58.872 50.0 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.543590 GAGGTCACTTTCAAGAGGATGA 57.456 45.455 0.00 0.00 0.00 2.92
22 23 4.899502 GAGGTCACTTTCAAGAGGATGAA 58.100 43.478 0.00 0.00 37.53 2.57
23 24 5.308825 GAGGTCACTTTCAAGAGGATGAAA 58.691 41.667 2.85 2.85 44.68 2.69
24 25 5.694995 AGGTCACTTTCAAGAGGATGAAAA 58.305 37.500 4.29 0.00 45.75 2.29
25 26 6.129179 AGGTCACTTTCAAGAGGATGAAAAA 58.871 36.000 4.29 0.00 45.75 1.94
26 27 6.039829 AGGTCACTTTCAAGAGGATGAAAAAC 59.960 38.462 4.29 3.62 45.75 2.43
27 28 6.039829 GGTCACTTTCAAGAGGATGAAAAACT 59.960 38.462 4.29 0.00 45.75 2.66
28 29 7.135467 GTCACTTTCAAGAGGATGAAAAACTC 58.865 38.462 4.29 0.00 45.75 3.01
29 30 6.017934 TCACTTTCAAGAGGATGAAAAACTCG 60.018 38.462 4.29 0.00 45.75 4.18
30 31 5.823045 ACTTTCAAGAGGATGAAAAACTCGT 59.177 36.000 4.29 0.00 45.75 4.18
31 32 6.990349 ACTTTCAAGAGGATGAAAAACTCGTA 59.010 34.615 4.29 0.00 45.75 3.43
32 33 7.171678 ACTTTCAAGAGGATGAAAAACTCGTAG 59.828 37.037 4.29 0.00 45.75 3.51
33 34 6.097915 TCAAGAGGATGAAAAACTCGTAGT 57.902 37.500 0.00 0.00 36.40 2.73
34 35 6.522054 TCAAGAGGATGAAAAACTCGTAGTT 58.478 36.000 0.00 0.00 40.80 2.24
35 36 6.645415 TCAAGAGGATGAAAAACTCGTAGTTC 59.355 38.462 1.58 0.00 37.47 3.01
36 37 6.097915 AGAGGATGAAAAACTCGTAGTTCA 57.902 37.500 1.58 0.00 37.47 3.18
37 38 6.522054 AGAGGATGAAAAACTCGTAGTTCAA 58.478 36.000 1.58 0.00 37.47 2.69
38 39 6.424207 AGAGGATGAAAAACTCGTAGTTCAAC 59.576 38.462 1.58 0.00 37.47 3.18
39 40 6.289064 AGGATGAAAAACTCGTAGTTCAACT 58.711 36.000 0.00 0.00 37.47 3.16
40 41 7.439381 AGGATGAAAAACTCGTAGTTCAACTA 58.561 34.615 0.00 0.00 37.47 2.24
41 42 7.599245 AGGATGAAAAACTCGTAGTTCAACTAG 59.401 37.037 0.00 0.00 37.47 2.57
42 43 7.384387 GGATGAAAAACTCGTAGTTCAACTAGT 59.616 37.037 0.00 0.00 37.47 2.57
43 44 9.403110 GATGAAAAACTCGTAGTTCAACTAGTA 57.597 33.333 0.00 0.00 37.47 1.82
44 45 9.754382 ATGAAAAACTCGTAGTTCAACTAGTAA 57.246 29.630 0.00 0.00 37.47 2.24
45 46 9.585099 TGAAAAACTCGTAGTTCAACTAGTAAA 57.415 29.630 0.00 0.00 37.47 2.01
108 109 9.695526 TTGAAATTCATGTTGAAATCCAGTAAG 57.304 29.630 0.00 0.00 40.12 2.34
109 110 8.306038 TGAAATTCATGTTGAAATCCAGTAAGG 58.694 33.333 0.00 0.00 40.12 2.69
110 111 8.421249 AAATTCATGTTGAAATCCAGTAAGGA 57.579 30.769 0.00 0.00 44.08 3.36
111 112 8.421249 AATTCATGTTGAAATCCAGTAAGGAA 57.579 30.769 0.00 0.00 43.54 3.36
112 113 7.831691 TTCATGTTGAAATCCAGTAAGGAAA 57.168 32.000 0.00 0.00 39.83 3.13
113 114 8.243961 TTCATGTTGAAATCCAGTAAGGAAAA 57.756 30.769 0.00 0.00 39.83 2.29
114 115 8.700051 TTCATGTTGAAATCCAGTAAGGAAAAA 58.300 29.630 0.00 0.00 39.83 1.94
122 123 5.845391 TCCAGTAAGGAAAAACTTTGGTG 57.155 39.130 0.00 0.00 45.65 4.17
123 124 4.647399 TCCAGTAAGGAAAAACTTTGGTGG 59.353 41.667 0.00 0.00 45.65 4.61
124 125 4.202212 CCAGTAAGGAAAAACTTTGGTGGG 60.202 45.833 0.00 0.00 41.22 4.61
125 126 3.964688 AGTAAGGAAAAACTTTGGTGGGG 59.035 43.478 0.00 0.00 32.02 4.96
126 127 2.858787 AGGAAAAACTTTGGTGGGGA 57.141 45.000 0.00 0.00 0.00 4.81
127 128 3.123392 AGGAAAAACTTTGGTGGGGAA 57.877 42.857 0.00 0.00 0.00 3.97
128 129 3.038280 AGGAAAAACTTTGGTGGGGAAG 58.962 45.455 0.00 0.00 0.00 3.46
129 130 3.035363 GGAAAAACTTTGGTGGGGAAGA 58.965 45.455 0.00 0.00 0.00 2.87
130 131 3.452990 GGAAAAACTTTGGTGGGGAAGAA 59.547 43.478 0.00 0.00 0.00 2.52
131 132 4.080807 GGAAAAACTTTGGTGGGGAAGAAA 60.081 41.667 0.00 0.00 0.00 2.52
132 133 4.753516 AAAACTTTGGTGGGGAAGAAAG 57.246 40.909 0.00 0.00 0.00 2.62
133 134 2.381752 ACTTTGGTGGGGAAGAAAGG 57.618 50.000 0.00 0.00 31.02 3.11
134 135 1.856920 ACTTTGGTGGGGAAGAAAGGA 59.143 47.619 0.00 0.00 31.02 3.36
135 136 2.158460 ACTTTGGTGGGGAAGAAAGGAG 60.158 50.000 0.00 0.00 31.02 3.69
136 137 1.529744 TTGGTGGGGAAGAAAGGAGT 58.470 50.000 0.00 0.00 0.00 3.85
137 138 2.426431 TGGTGGGGAAGAAAGGAGTA 57.574 50.000 0.00 0.00 0.00 2.59
138 139 2.708759 TGGTGGGGAAGAAAGGAGTAA 58.291 47.619 0.00 0.00 0.00 2.24
139 140 3.265489 TGGTGGGGAAGAAAGGAGTAAT 58.735 45.455 0.00 0.00 0.00 1.89
140 141 3.010138 TGGTGGGGAAGAAAGGAGTAATG 59.990 47.826 0.00 0.00 0.00 1.90
141 142 3.017442 GTGGGGAAGAAAGGAGTAATGC 58.983 50.000 0.00 0.00 0.00 3.56
142 143 2.919602 TGGGGAAGAAAGGAGTAATGCT 59.080 45.455 0.00 0.00 0.00 3.79
143 144 4.080526 GTGGGGAAGAAAGGAGTAATGCTA 60.081 45.833 0.00 0.00 0.00 3.49
144 145 4.080526 TGGGGAAGAAAGGAGTAATGCTAC 60.081 45.833 0.00 0.00 0.00 3.58
145 146 4.080526 GGGGAAGAAAGGAGTAATGCTACA 60.081 45.833 0.00 0.00 0.00 2.74
146 147 5.398012 GGGGAAGAAAGGAGTAATGCTACAT 60.398 44.000 0.00 0.00 0.00 2.29
147 148 5.760743 GGGAAGAAAGGAGTAATGCTACATC 59.239 44.000 0.00 0.00 0.00 3.06
148 149 6.408662 GGGAAGAAAGGAGTAATGCTACATCT 60.409 42.308 0.00 0.00 30.62 2.90
149 150 7.202011 GGGAAGAAAGGAGTAATGCTACATCTA 60.202 40.741 0.00 0.00 29.66 1.98
150 151 7.654116 GGAAGAAAGGAGTAATGCTACATCTAC 59.346 40.741 0.00 0.00 29.66 2.59
151 152 6.740110 AGAAAGGAGTAATGCTACATCTACG 58.260 40.000 0.00 0.00 28.48 3.51
152 153 6.321690 AGAAAGGAGTAATGCTACATCTACGT 59.678 38.462 0.00 0.00 28.48 3.57
153 154 7.501559 AGAAAGGAGTAATGCTACATCTACGTA 59.498 37.037 0.00 0.00 28.48 3.57
154 155 7.578310 AAGGAGTAATGCTACATCTACGTAA 57.422 36.000 0.00 0.00 0.00 3.18
155 156 7.762588 AGGAGTAATGCTACATCTACGTAAT 57.237 36.000 0.00 0.00 0.00 1.89
156 157 8.179509 AGGAGTAATGCTACATCTACGTAATT 57.820 34.615 0.00 0.00 0.00 1.40
157 158 8.082852 AGGAGTAATGCTACATCTACGTAATTG 58.917 37.037 0.00 0.00 0.00 2.32
158 159 7.866393 GGAGTAATGCTACATCTACGTAATTGT 59.134 37.037 12.93 12.93 0.00 2.71
159 160 9.245962 GAGTAATGCTACATCTACGTAATTGTT 57.754 33.333 13.43 1.34 0.00 2.83
160 161 9.595823 AGTAATGCTACATCTACGTAATTGTTT 57.404 29.630 13.43 6.47 0.00 2.83
188 189 8.807667 ACGTATTTTATGTAATACTCCCTTCG 57.192 34.615 0.00 0.00 38.34 3.79
189 190 8.416329 ACGTATTTTATGTAATACTCCCTTCGT 58.584 33.333 0.00 0.00 38.34 3.85
190 191 9.252962 CGTATTTTATGTAATACTCCCTTCGTT 57.747 33.333 0.00 0.00 38.34 3.85
255 256 9.946165 AAAAACGTTCTACAGAAATTTCTAAGG 57.054 29.630 20.07 16.96 35.34 2.69
256 257 7.668525 AACGTTCTACAGAAATTTCTAAGGG 57.331 36.000 20.07 10.58 35.34 3.95
257 258 5.642491 ACGTTCTACAGAAATTTCTAAGGGC 59.358 40.000 20.07 13.99 35.34 5.19
258 259 5.642063 CGTTCTACAGAAATTTCTAAGGGCA 59.358 40.000 20.07 6.71 35.34 5.36
259 260 6.148811 CGTTCTACAGAAATTTCTAAGGGCAA 59.851 38.462 20.07 8.68 35.34 4.52
260 261 7.308348 CGTTCTACAGAAATTTCTAAGGGCAAA 60.308 37.037 20.07 8.39 35.34 3.68
261 262 8.523658 GTTCTACAGAAATTTCTAAGGGCAAAT 58.476 33.333 20.07 1.51 35.34 2.32
262 263 8.281212 TCTACAGAAATTTCTAAGGGCAAATC 57.719 34.615 20.07 0.00 35.34 2.17
263 264 6.916360 ACAGAAATTTCTAAGGGCAAATCA 57.084 33.333 20.07 0.00 35.34 2.57
264 265 7.486407 ACAGAAATTTCTAAGGGCAAATCAT 57.514 32.000 20.07 0.00 35.34 2.45
265 266 7.550712 ACAGAAATTTCTAAGGGCAAATCATC 58.449 34.615 20.07 0.00 35.34 2.92
266 267 7.178983 ACAGAAATTTCTAAGGGCAAATCATCA 59.821 33.333 20.07 0.00 35.34 3.07
267 268 8.036575 CAGAAATTTCTAAGGGCAAATCATCAA 58.963 33.333 20.07 0.00 35.34 2.57
268 269 8.596293 AGAAATTTCTAAGGGCAAATCATCAAA 58.404 29.630 19.17 0.00 35.34 2.69
269 270 9.218440 GAAATTTCTAAGGGCAAATCATCAAAA 57.782 29.630 11.05 0.00 0.00 2.44
270 271 8.552083 AATTTCTAAGGGCAAATCATCAAAAC 57.448 30.769 0.00 0.00 0.00 2.43
271 272 5.659440 TCTAAGGGCAAATCATCAAAACC 57.341 39.130 0.00 0.00 0.00 3.27
272 273 5.332743 TCTAAGGGCAAATCATCAAAACCT 58.667 37.500 0.00 0.00 0.00 3.50
273 274 6.489603 TCTAAGGGCAAATCATCAAAACCTA 58.510 36.000 0.00 0.00 0.00 3.08
274 275 6.951198 TCTAAGGGCAAATCATCAAAACCTAA 59.049 34.615 0.00 0.00 0.00 2.69
275 276 6.432403 AAGGGCAAATCATCAAAACCTAAA 57.568 33.333 0.00 0.00 0.00 1.85
276 277 6.432403 AGGGCAAATCATCAAAACCTAAAA 57.568 33.333 0.00 0.00 0.00 1.52
277 278 6.836242 AGGGCAAATCATCAAAACCTAAAAA 58.164 32.000 0.00 0.00 0.00 1.94
278 279 7.460910 AGGGCAAATCATCAAAACCTAAAAAT 58.539 30.769 0.00 0.00 0.00 1.82
279 280 7.607607 AGGGCAAATCATCAAAACCTAAAAATC 59.392 33.333 0.00 0.00 0.00 2.17
280 281 7.148255 GGGCAAATCATCAAAACCTAAAAATCC 60.148 37.037 0.00 0.00 0.00 3.01
281 282 7.148255 GGCAAATCATCAAAACCTAAAAATCCC 60.148 37.037 0.00 0.00 0.00 3.85
282 283 7.148255 GCAAATCATCAAAACCTAAAAATCCCC 60.148 37.037 0.00 0.00 0.00 4.81
283 284 5.652994 TCATCAAAACCTAAAAATCCCCG 57.347 39.130 0.00 0.00 0.00 5.73
284 285 5.081032 TCATCAAAACCTAAAAATCCCCGT 58.919 37.500 0.00 0.00 0.00 5.28
285 286 4.857509 TCAAAACCTAAAAATCCCCGTG 57.142 40.909 0.00 0.00 0.00 4.94
286 287 4.216708 TCAAAACCTAAAAATCCCCGTGT 58.783 39.130 0.00 0.00 0.00 4.49
287 288 5.383476 TCAAAACCTAAAAATCCCCGTGTA 58.617 37.500 0.00 0.00 0.00 2.90
288 289 5.241285 TCAAAACCTAAAAATCCCCGTGTAC 59.759 40.000 0.00 0.00 0.00 2.90
289 290 2.976589 ACCTAAAAATCCCCGTGTACG 58.023 47.619 0.00 0.00 39.44 3.67
306 307 3.263170 TGTACGGTGTACCTACTCTACCA 59.737 47.826 4.78 0.00 0.00 3.25
362 363 2.354729 CCCCAATTCCGAGTGGCA 59.645 61.111 0.00 0.00 39.67 4.92
442 466 4.468689 GCCGCTGACCCCACCTAC 62.469 72.222 0.00 0.00 0.00 3.18
443 467 4.143333 CCGCTGACCCCACCTACG 62.143 72.222 0.00 0.00 0.00 3.51
444 468 3.379445 CGCTGACCCCACCTACGT 61.379 66.667 0.00 0.00 0.00 3.57
445 469 2.577593 GCTGACCCCACCTACGTC 59.422 66.667 0.00 0.00 0.00 4.34
446 470 2.882876 CTGACCCCACCTACGTCG 59.117 66.667 0.00 0.00 0.00 5.12
447 471 2.677524 TGACCCCACCTACGTCGG 60.678 66.667 4.24 4.24 0.00 4.79
448 472 2.677875 GACCCCACCTACGTCGGT 60.678 66.667 5.82 5.82 37.93 4.69
449 473 1.378514 GACCCCACCTACGTCGGTA 60.379 63.158 11.96 0.00 34.94 4.02
450 474 0.753111 GACCCCACCTACGTCGGTAT 60.753 60.000 11.96 0.00 34.94 2.73
451 475 0.550914 ACCCCACCTACGTCGGTATA 59.449 55.000 11.96 0.00 34.94 1.47
452 476 1.242076 CCCCACCTACGTCGGTATAG 58.758 60.000 11.96 3.98 34.94 1.31
453 477 1.202806 CCCCACCTACGTCGGTATAGA 60.203 57.143 11.96 0.00 34.94 1.98
454 478 2.149578 CCCACCTACGTCGGTATAGAG 58.850 57.143 11.96 0.00 34.94 2.43
455 479 2.224378 CCCACCTACGTCGGTATAGAGA 60.224 54.545 11.96 0.00 34.94 3.10
456 480 3.470709 CCACCTACGTCGGTATAGAGAA 58.529 50.000 11.96 0.00 34.94 2.87
457 481 3.879295 CCACCTACGTCGGTATAGAGAAA 59.121 47.826 11.96 0.00 34.94 2.52
458 482 4.336433 CCACCTACGTCGGTATAGAGAAAA 59.664 45.833 11.96 0.00 34.94 2.29
459 483 5.505324 CCACCTACGTCGGTATAGAGAAAAG 60.505 48.000 11.96 0.00 34.94 2.27
460 484 5.295292 CACCTACGTCGGTATAGAGAAAAGA 59.705 44.000 11.96 0.00 34.94 2.52
461 485 5.882557 ACCTACGTCGGTATAGAGAAAAGAA 59.117 40.000 10.52 0.00 34.94 2.52
462 486 6.545298 ACCTACGTCGGTATAGAGAAAAGAAT 59.455 38.462 10.52 0.00 34.94 2.40
463 487 7.076983 CCTACGTCGGTATAGAGAAAAGAATC 58.923 42.308 0.00 0.00 0.00 2.52
464 488 5.829829 ACGTCGGTATAGAGAAAAGAATCC 58.170 41.667 0.00 0.00 0.00 3.01
465 489 5.593502 ACGTCGGTATAGAGAAAAGAATCCT 59.406 40.000 0.00 0.00 0.00 3.24
466 490 5.915758 CGTCGGTATAGAGAAAAGAATCCTG 59.084 44.000 0.00 0.00 0.00 3.86
467 491 5.692654 GTCGGTATAGAGAAAAGAATCCTGC 59.307 44.000 0.00 0.00 0.00 4.85
468 492 4.991687 CGGTATAGAGAAAAGAATCCTGCC 59.008 45.833 0.00 0.00 0.00 4.85
469 493 4.991687 GGTATAGAGAAAAGAATCCTGCCG 59.008 45.833 0.00 0.00 0.00 5.69
470 494 1.743996 AGAGAAAAGAATCCTGCCGC 58.256 50.000 0.00 0.00 0.00 6.53
471 495 0.375106 GAGAAAAGAATCCTGCCGCG 59.625 55.000 0.00 0.00 0.00 6.46
472 496 1.226407 GAAAAGAATCCTGCCGCGC 60.226 57.895 0.00 0.00 0.00 6.86
473 497 2.598619 GAAAAGAATCCTGCCGCGCC 62.599 60.000 0.00 0.00 0.00 6.53
490 514 4.856607 CGGAGGAAGCTCGCCGTC 62.857 72.222 9.08 2.90 38.99 4.79
491 515 4.856607 GGAGGAAGCTCGCCGTCG 62.857 72.222 0.00 0.00 0.00 5.12
492 516 4.117661 GAGGAAGCTCGCCGTCGT 62.118 66.667 0.00 0.00 36.96 4.34
493 517 4.117661 AGGAAGCTCGCCGTCGTC 62.118 66.667 0.00 0.00 36.96 4.20
506 530 4.728102 TCGTCGCCGTGCCGAATT 62.728 61.111 0.00 0.00 39.17 2.17
507 531 4.204891 CGTCGCCGTGCCGAATTC 62.205 66.667 0.00 0.00 39.17 2.17
508 532 2.813908 GTCGCCGTGCCGAATTCT 60.814 61.111 3.52 0.00 39.17 2.40
509 533 1.517694 GTCGCCGTGCCGAATTCTA 60.518 57.895 3.52 0.00 39.17 2.10
510 534 1.079875 GTCGCCGTGCCGAATTCTAA 61.080 55.000 3.52 0.00 39.17 2.10
511 535 0.179094 TCGCCGTGCCGAATTCTAAT 60.179 50.000 3.52 0.00 33.77 1.73
512 536 0.232303 CGCCGTGCCGAATTCTAATC 59.768 55.000 3.52 0.00 0.00 1.75
513 537 0.232303 GCCGTGCCGAATTCTAATCG 59.768 55.000 3.52 3.83 39.92 3.34
514 538 1.847818 CCGTGCCGAATTCTAATCGA 58.152 50.000 3.52 0.00 42.76 3.59
515 539 1.521423 CCGTGCCGAATTCTAATCGAC 59.479 52.381 3.52 0.00 42.76 4.20
516 540 2.190161 CGTGCCGAATTCTAATCGACA 58.810 47.619 3.52 0.00 42.76 4.35
517 541 2.794910 CGTGCCGAATTCTAATCGACAT 59.205 45.455 3.52 0.00 42.76 3.06
518 542 3.362014 CGTGCCGAATTCTAATCGACATG 60.362 47.826 3.52 0.00 42.76 3.21
519 543 3.059597 GTGCCGAATTCTAATCGACATGG 60.060 47.826 3.52 0.00 42.76 3.66
520 544 2.480419 GCCGAATTCTAATCGACATGGG 59.520 50.000 3.52 0.00 42.76 4.00
521 545 3.067106 CCGAATTCTAATCGACATGGGG 58.933 50.000 3.52 0.00 42.76 4.96
522 546 3.244078 CCGAATTCTAATCGACATGGGGA 60.244 47.826 3.52 0.00 42.76 4.81
523 547 4.563580 CCGAATTCTAATCGACATGGGGAT 60.564 45.833 3.52 0.00 42.76 3.85
524 548 4.997395 CGAATTCTAATCGACATGGGGATT 59.003 41.667 15.13 15.13 42.76 3.01
525 549 5.470098 CGAATTCTAATCGACATGGGGATTT 59.530 40.000 15.75 1.74 42.76 2.17
526 550 6.347725 CGAATTCTAATCGACATGGGGATTTC 60.348 42.308 15.75 8.37 42.76 2.17
527 551 3.990092 TCTAATCGACATGGGGATTTCG 58.010 45.455 15.75 6.78 34.82 3.46
528 552 1.308998 AATCGACATGGGGATTTCGC 58.691 50.000 7.46 0.00 28.81 4.70
529 553 0.180171 ATCGACATGGGGATTTCGCA 59.820 50.000 0.00 0.00 42.62 5.10
530 554 0.461870 TCGACATGGGGATTTCGCAG 60.462 55.000 0.00 0.00 41.71 5.18
531 555 0.461870 CGACATGGGGATTTCGCAGA 60.462 55.000 0.00 0.00 41.71 4.26
532 556 1.303309 GACATGGGGATTTCGCAGAG 58.697 55.000 0.00 0.00 41.71 3.35
533 557 0.107017 ACATGGGGATTTCGCAGAGG 60.107 55.000 0.00 0.00 41.71 3.69
534 558 0.181114 CATGGGGATTTCGCAGAGGA 59.819 55.000 0.00 0.00 41.71 3.71
535 559 0.471617 ATGGGGATTTCGCAGAGGAG 59.528 55.000 0.00 0.00 41.71 3.69
536 560 0.617535 TGGGGATTTCGCAGAGGAGA 60.618 55.000 0.00 0.00 38.43 3.71
537 561 0.541863 GGGGATTTCGCAGAGGAGAA 59.458 55.000 0.00 0.00 38.43 2.87
538 562 1.474143 GGGGATTTCGCAGAGGAGAAG 60.474 57.143 0.00 0.00 38.43 2.85
539 563 1.482593 GGGATTTCGCAGAGGAGAAGA 59.517 52.381 0.00 0.00 38.43 2.87
540 564 2.093447 GGGATTTCGCAGAGGAGAAGAA 60.093 50.000 0.00 0.00 38.43 2.52
541 565 3.194062 GGATTTCGCAGAGGAGAAGAAG 58.806 50.000 0.00 0.00 38.43 2.85
542 566 3.118956 GGATTTCGCAGAGGAGAAGAAGA 60.119 47.826 0.00 0.00 38.43 2.87
543 567 3.305398 TTTCGCAGAGGAGAAGAAGAC 57.695 47.619 0.00 0.00 38.43 3.01
544 568 0.805614 TCGCAGAGGAGAAGAAGACG 59.194 55.000 0.00 0.00 0.00 4.18
545 569 0.523966 CGCAGAGGAGAAGAAGACGT 59.476 55.000 0.00 0.00 0.00 4.34
546 570 1.068194 CGCAGAGGAGAAGAAGACGTT 60.068 52.381 0.00 0.00 0.00 3.99
547 571 2.333014 GCAGAGGAGAAGAAGACGTTG 58.667 52.381 0.00 0.00 0.00 4.10
548 572 2.288518 GCAGAGGAGAAGAAGACGTTGT 60.289 50.000 0.00 0.00 0.00 3.32
549 573 3.800604 GCAGAGGAGAAGAAGACGTTGTT 60.801 47.826 0.00 0.00 0.00 2.83
550 574 4.372656 CAGAGGAGAAGAAGACGTTGTTT 58.627 43.478 0.00 0.00 0.00 2.83
551 575 4.811557 CAGAGGAGAAGAAGACGTTGTTTT 59.188 41.667 0.00 0.00 0.00 2.43
552 576 5.294552 CAGAGGAGAAGAAGACGTTGTTTTT 59.705 40.000 0.00 0.00 0.00 1.94
573 597 6.810888 TTTTCTTTGTTGCTTTGAGATTCG 57.189 33.333 0.00 0.00 0.00 3.34
574 598 5.499139 TTCTTTGTTGCTTTGAGATTCGT 57.501 34.783 0.00 0.00 0.00 3.85
575 599 6.612247 TTCTTTGTTGCTTTGAGATTCGTA 57.388 33.333 0.00 0.00 0.00 3.43
576 600 6.612247 TCTTTGTTGCTTTGAGATTCGTAA 57.388 33.333 0.00 0.00 0.00 3.18
577 601 7.022055 TCTTTGTTGCTTTGAGATTCGTAAA 57.978 32.000 0.00 0.00 0.00 2.01
578 602 7.648142 TCTTTGTTGCTTTGAGATTCGTAAAT 58.352 30.769 0.00 0.00 0.00 1.40
579 603 7.803189 TCTTTGTTGCTTTGAGATTCGTAAATC 59.197 33.333 0.00 0.00 41.43 2.17
580 604 5.938322 TGTTGCTTTGAGATTCGTAAATCC 58.062 37.500 0.00 0.00 41.97 3.01
581 605 5.471797 TGTTGCTTTGAGATTCGTAAATCCA 59.528 36.000 0.00 0.00 41.97 3.41
582 606 5.545658 TGCTTTGAGATTCGTAAATCCAC 57.454 39.130 0.00 0.00 41.97 4.02
583 607 4.092821 TGCTTTGAGATTCGTAAATCCACG 59.907 41.667 0.00 0.00 41.97 4.94
584 608 4.092968 GCTTTGAGATTCGTAAATCCACGT 59.907 41.667 0.00 0.00 41.97 4.49
585 609 5.524511 TTTGAGATTCGTAAATCCACGTG 57.475 39.130 9.08 9.08 41.97 4.49
586 610 4.182693 TGAGATTCGTAAATCCACGTGT 57.817 40.909 15.65 0.00 41.97 4.49
587 611 4.171005 TGAGATTCGTAAATCCACGTGTC 58.829 43.478 15.65 0.91 41.97 3.67
588 612 4.171005 GAGATTCGTAAATCCACGTGTCA 58.829 43.478 15.65 0.14 41.97 3.58
589 613 4.174009 AGATTCGTAAATCCACGTGTCAG 58.826 43.478 15.65 0.00 41.97 3.51
590 614 1.705256 TCGTAAATCCACGTGTCAGC 58.295 50.000 15.65 0.00 42.51 4.26
591 615 1.271379 TCGTAAATCCACGTGTCAGCT 59.729 47.619 15.65 0.00 42.51 4.24
592 616 1.390123 CGTAAATCCACGTGTCAGCTG 59.610 52.381 15.65 7.63 37.16 4.24
593 617 1.732259 GTAAATCCACGTGTCAGCTGG 59.268 52.381 15.13 0.00 0.00 4.85
594 618 0.108585 AAATCCACGTGTCAGCTGGT 59.891 50.000 15.13 0.00 0.00 4.00
595 619 0.320771 AATCCACGTGTCAGCTGGTC 60.321 55.000 15.13 8.33 0.00 4.02
596 620 2.492449 ATCCACGTGTCAGCTGGTCG 62.492 60.000 15.13 17.41 0.00 4.79
597 621 2.335011 CACGTGTCAGCTGGTCGA 59.665 61.111 24.08 1.34 0.00 4.20
598 622 1.080501 CACGTGTCAGCTGGTCGAT 60.081 57.895 24.08 11.53 0.00 3.59
599 623 1.080501 ACGTGTCAGCTGGTCGATG 60.081 57.895 24.08 11.16 0.00 3.84
600 624 1.807165 CGTGTCAGCTGGTCGATGG 60.807 63.158 15.13 0.00 0.00 3.51
601 625 1.448540 GTGTCAGCTGGTCGATGGG 60.449 63.158 15.13 0.00 0.00 4.00
602 626 2.187946 GTCAGCTGGTCGATGGGG 59.812 66.667 15.13 0.00 0.00 4.96
603 627 2.284625 TCAGCTGGTCGATGGGGT 60.285 61.111 15.13 0.00 0.00 4.95
604 628 2.187946 CAGCTGGTCGATGGGGTC 59.812 66.667 5.57 0.00 0.00 4.46
605 629 2.039624 AGCTGGTCGATGGGGTCT 59.960 61.111 0.00 0.00 0.00 3.85
606 630 2.060980 AGCTGGTCGATGGGGTCTC 61.061 63.158 0.00 0.00 0.00 3.36
607 631 2.359169 GCTGGTCGATGGGGTCTCA 61.359 63.158 0.00 0.00 0.00 3.27
608 632 1.690219 GCTGGTCGATGGGGTCTCAT 61.690 60.000 0.00 0.00 0.00 2.90
609 633 0.105593 CTGGTCGATGGGGTCTCATG 59.894 60.000 0.00 0.00 0.00 3.07
610 634 0.325203 TGGTCGATGGGGTCTCATGA 60.325 55.000 0.00 0.00 0.00 3.07
611 635 0.390860 GGTCGATGGGGTCTCATGAG 59.609 60.000 17.07 17.07 0.00 2.90
612 636 1.403814 GTCGATGGGGTCTCATGAGA 58.596 55.000 21.67 21.67 34.56 3.27
613 637 1.967066 GTCGATGGGGTCTCATGAGAT 59.033 52.381 27.51 12.02 39.97 2.75
614 638 1.966354 TCGATGGGGTCTCATGAGATG 59.034 52.381 27.51 11.90 39.97 2.90
615 639 1.966354 CGATGGGGTCTCATGAGATGA 59.034 52.381 27.51 12.53 39.97 2.92
616 640 2.366590 CGATGGGGTCTCATGAGATGAA 59.633 50.000 27.51 14.34 39.97 2.57
617 641 3.737850 GATGGGGTCTCATGAGATGAAC 58.262 50.000 27.51 15.26 39.97 3.18
618 642 1.839994 TGGGGTCTCATGAGATGAACC 59.160 52.381 27.51 22.58 39.97 3.62
619 643 1.202580 GGGGTCTCATGAGATGAACCG 60.203 57.143 27.51 0.00 39.35 4.44
620 644 1.482593 GGGTCTCATGAGATGAACCGT 59.517 52.381 27.51 0.00 39.35 4.83
621 645 2.693591 GGGTCTCATGAGATGAACCGTA 59.306 50.000 27.51 0.00 39.35 4.02
622 646 3.491104 GGGTCTCATGAGATGAACCGTAC 60.491 52.174 27.51 12.10 39.35 3.67
623 647 3.364062 GTCTCATGAGATGAACCGTACG 58.636 50.000 27.51 8.69 39.97 3.67
624 648 3.064958 GTCTCATGAGATGAACCGTACGA 59.935 47.826 27.51 0.00 39.97 3.43
625 649 3.064958 TCTCATGAGATGAACCGTACGAC 59.935 47.826 21.67 8.40 39.11 4.34
626 650 2.098607 TCATGAGATGAACCGTACGACC 59.901 50.000 18.76 5.71 36.11 4.79
627 651 1.536940 TGAGATGAACCGTACGACCA 58.463 50.000 18.76 11.50 0.00 4.02
628 652 1.471287 TGAGATGAACCGTACGACCAG 59.529 52.381 18.76 1.74 0.00 4.00
629 653 0.815734 AGATGAACCGTACGACCAGG 59.184 55.000 18.76 1.31 0.00 4.45
630 654 0.529378 GATGAACCGTACGACCAGGT 59.471 55.000 18.76 2.06 40.50 4.00
631 655 0.529378 ATGAACCGTACGACCAGGTC 59.471 55.000 18.76 9.92 37.26 3.85
647 671 7.466193 GACCAGGTCGTATAAGATTTTCTTC 57.534 40.000 3.05 0.00 37.89 2.87
648 672 6.346896 ACCAGGTCGTATAAGATTTTCTTCC 58.653 40.000 0.00 0.00 37.89 3.46
653 677 6.980397 GGTCGTATAAGATTTTCTTCCCGTAA 59.020 38.462 0.00 0.00 37.89 3.18
691 715 1.617322 CGTAGGTAGCCATGCCTCTA 58.383 55.000 0.00 0.00 41.23 2.43
692 716 1.961394 CGTAGGTAGCCATGCCTCTAA 59.039 52.381 0.00 0.00 41.23 2.10
695 719 4.503296 CGTAGGTAGCCATGCCTCTAATTT 60.503 45.833 0.00 0.00 41.23 1.82
697 721 3.149981 GGTAGCCATGCCTCTAATTTCC 58.850 50.000 0.00 0.00 0.00 3.13
698 722 1.972872 AGCCATGCCTCTAATTTCCG 58.027 50.000 0.00 0.00 0.00 4.30
702 726 2.291741 CCATGCCTCTAATTTCCGCTTC 59.708 50.000 0.00 0.00 0.00 3.86
703 727 1.651987 TGCCTCTAATTTCCGCTTCG 58.348 50.000 0.00 0.00 0.00 3.79
736 760 3.267860 CATCGGCTCCGCAGCTTC 61.268 66.667 0.00 0.00 46.03 3.86
737 761 4.537433 ATCGGCTCCGCAGCTTCC 62.537 66.667 0.00 0.00 46.03 3.46
739 763 4.845580 CGGCTCCGCAGCTTCCAT 62.846 66.667 0.00 0.00 46.03 3.41
740 764 2.439156 GGCTCCGCAGCTTCCATT 60.439 61.111 0.00 0.00 46.03 3.16
741 765 2.768492 GGCTCCGCAGCTTCCATTG 61.768 63.158 0.00 0.00 46.03 2.82
742 766 2.796651 CTCCGCAGCTTCCATTGC 59.203 61.111 0.00 0.00 36.97 3.56
746 770 2.486966 GCAGCTTCCATTGCGACC 59.513 61.111 0.00 0.00 35.28 4.79
747 771 2.787249 CAGCTTCCATTGCGACCG 59.213 61.111 0.00 0.00 35.28 4.79
748 772 3.127533 AGCTTCCATTGCGACCGC 61.128 61.111 7.53 7.53 42.35 5.68
908 932 0.110644 GTGCTTCAGTTTTCCTCGCG 60.111 55.000 0.00 0.00 0.00 5.87
937 961 5.484290 TCCTTTCCCTGAGACTTTTACTAGG 59.516 44.000 0.00 0.00 0.00 3.02
998 2040 5.316488 GTGGAATCAATTAGACACGATCG 57.684 43.478 14.88 14.88 0.00 3.69
1001 2043 5.221441 TGGAATCAATTAGACACGATCGGAT 60.221 40.000 20.98 6.57 0.00 4.18
1019 2061 5.359756 TCGGATGATTGGTGAGATTACTTG 58.640 41.667 0.00 0.00 0.00 3.16
1069 2111 8.663167 TGGATCCAGATATACATTTGTCAGAAT 58.337 33.333 11.44 0.00 0.00 2.40
1083 2125 8.800972 CATTTGTCAGAATTTATTCGAACATGG 58.199 33.333 0.00 0.00 41.56 3.66
1096 2138 6.908870 TTCGAACATGGTTCAGAAGATATG 57.091 37.500 9.50 0.00 0.00 1.78
1099 2141 5.277202 CGAACATGGTTCAGAAGATATGCTG 60.277 44.000 9.50 0.00 0.00 4.41
1206 2251 5.537188 ACTGTTTGCTGTGTCTTTTTGAAA 58.463 33.333 0.00 0.00 0.00 2.69
1210 2255 6.531240 TGTTTGCTGTGTCTTTTTGAAAGATC 59.469 34.615 6.42 4.67 0.00 2.75
1238 2284 2.021262 TCTCCTAGGCCATCATCCAG 57.979 55.000 5.01 0.00 0.00 3.86
1239 2285 1.505098 TCTCCTAGGCCATCATCCAGA 59.495 52.381 5.01 0.00 0.00 3.86
1240 2286 2.113233 TCTCCTAGGCCATCATCCAGAT 59.887 50.000 5.01 0.00 37.48 2.90
1241 2287 2.500910 CTCCTAGGCCATCATCCAGATC 59.499 54.545 5.01 0.00 33.72 2.75
1242 2288 1.558756 CCTAGGCCATCATCCAGATCC 59.441 57.143 5.01 0.00 33.72 3.36
1243 2289 2.263545 CTAGGCCATCATCCAGATCCA 58.736 52.381 5.01 0.00 33.72 3.41
1244 2290 1.065647 AGGCCATCATCCAGATCCAG 58.934 55.000 5.01 0.00 33.72 3.86
1247 2293 2.502295 GCCATCATCCAGATCCAGTTC 58.498 52.381 0.00 0.00 33.72 3.01
1263 2309 9.401058 AGATCCAGTTCGAAGAAATTATGAAAT 57.599 29.630 0.00 0.00 45.90 2.17
1266 2312 9.231297 TCCAGTTCGAAGAAATTATGAAATTCT 57.769 29.630 0.00 0.00 45.90 2.40
1330 2376 9.213799 AGAAATAATGTTGAGACAGAAACTCTC 57.786 33.333 0.00 0.00 39.58 3.20
1378 2424 1.174783 TCGGACAGTCTTGAGCTACC 58.825 55.000 0.00 0.00 0.00 3.18
1392 2438 0.389948 GCTACCGAGTCCCTGTGTTG 60.390 60.000 0.00 0.00 0.00 3.33
1793 2839 4.935352 TCAACCAAACTTTGAAGATGGG 57.065 40.909 17.86 8.44 39.31 4.00
1794 2840 3.640967 TCAACCAAACTTTGAAGATGGGG 59.359 43.478 17.86 12.40 39.31 4.96
1810 2856 0.609681 GGGGTGATTGTTGGGCGTAA 60.610 55.000 0.00 0.00 0.00 3.18
1932 2978 6.312426 CCTTAGAAGCATCACAAACTCTGTAG 59.688 42.308 0.00 0.00 36.10 2.74
1934 2980 2.704572 AGCATCACAAACTCTGTAGCC 58.295 47.619 0.00 0.00 36.10 3.93
2015 3061 8.879342 ACAATGCACAGATAACTAGAATCTAC 57.121 34.615 10.64 6.14 32.40 2.59
2114 3160 3.188460 CCCGAAATGACAAACCAGTAGTG 59.812 47.826 0.00 0.00 0.00 2.74
2190 3236 1.579429 CTTTCGGTTTGGAAGGGCG 59.421 57.895 0.00 0.00 0.00 6.13
2228 3274 4.495349 GCATTCTGTGATTCATGGAAGTCG 60.495 45.833 0.00 0.00 0.00 4.18
2248 3294 1.935327 GACTGGTTAGAGGCGAGCGT 61.935 60.000 0.00 0.00 0.00 5.07
2251 3297 2.886124 GTTAGAGGCGAGCGTGGC 60.886 66.667 0.00 0.00 0.00 5.01
2282 3328 3.940209 CACATTGTGCCCAAAGTGTAT 57.060 42.857 8.82 0.00 42.45 2.29
2284 3330 4.985413 CACATTGTGCCCAAAGTGTATAG 58.015 43.478 8.82 0.00 42.45 1.31
2463 3509 4.286808 TCTGGGATGAAGAACTGACATTCA 59.713 41.667 0.00 0.00 37.36 2.57
2589 3635 1.006102 CAGCGTCGAGTTGGAGGTT 60.006 57.895 0.00 0.00 0.00 3.50
2601 3647 1.070786 GGAGGTTTGTCGTCTGCCA 59.929 57.895 0.00 0.00 0.00 4.92
2678 3724 0.678048 GTGCTGGGGATGAGTTGACC 60.678 60.000 0.00 0.00 0.00 4.02
2682 3728 1.745489 GGGGATGAGTTGACCGTGC 60.745 63.158 0.00 0.00 0.00 5.34
2813 3859 0.333993 AGGTTGGCATCATTGGAGCT 59.666 50.000 0.00 0.00 0.00 4.09
2819 3865 1.528824 CATCATTGGAGCTCGGGGT 59.471 57.895 7.83 0.00 0.00 4.95
2841 3887 5.590663 GGTCTGCCTCCTATAAAAAGGAAAG 59.409 44.000 0.00 0.00 45.08 2.62
2843 3889 6.316640 GTCTGCCTCCTATAAAAAGGAAAGAC 59.683 42.308 11.32 11.32 45.08 3.01
2852 3898 7.556635 CCTATAAAAAGGAAAGACGGGAGATTT 59.443 37.037 0.00 0.00 39.15 2.17
2875 3921 2.288666 GTCGCATCCATATTGTGTGGT 58.711 47.619 0.00 0.00 37.96 4.16
2882 3928 5.180117 GCATCCATATTGTGTGGTGAGATAC 59.820 44.000 0.00 0.00 37.96 2.24
2924 3970 2.028839 TCGTACCATCATCAACAACCGT 60.029 45.455 0.00 0.00 0.00 4.83
2927 3973 2.151202 ACCATCATCAACAACCGTGAC 58.849 47.619 0.00 0.00 0.00 3.67
2977 4023 5.506317 GGGATGTTTATGATACAGCAACAGC 60.506 44.000 0.00 0.00 33.75 4.40
2999 4045 2.480419 CCTGATCGTTGGAGTGTTTGAC 59.520 50.000 0.00 0.00 0.00 3.18
3031 4077 2.037772 TGGAAGAGTCAAGTTCAGGAGC 59.962 50.000 0.00 0.00 0.00 4.70
3125 4171 3.942829 TGCATACCCTCTTCTTGTTCTG 58.057 45.455 0.00 0.00 0.00 3.02
3179 4225 1.278238 GCCTGTCGGTGAGATTTACG 58.722 55.000 0.00 0.00 0.00 3.18
3194 4240 8.985694 GTGAGATTTACGTCAAAATCATTAACG 58.014 33.333 20.44 0.00 44.70 3.18
3245 4291 2.499693 TCTACCAAAGATGCACCATCGA 59.500 45.455 0.00 0.00 44.67 3.59
3281 4327 7.383029 CAGATTCTGATAGAAGATCTGCAGTTC 59.617 40.741 14.67 15.23 37.69 3.01
3333 4379 2.050754 CCAGATGGATCCACCCCTAT 57.949 55.000 18.99 0.00 37.39 2.57
3422 4468 5.105146 GGTCAACTTCTACAGGATCATGTCT 60.105 44.000 17.56 0.00 34.56 3.41
3434 4480 3.434739 GGATCATGTCTGCCCTCTCAATT 60.435 47.826 0.00 0.00 0.00 2.32
3435 4481 3.726557 TCATGTCTGCCCTCTCAATTT 57.273 42.857 0.00 0.00 0.00 1.82
3437 4483 4.410099 TCATGTCTGCCCTCTCAATTTTT 58.590 39.130 0.00 0.00 0.00 1.94
3451 4497 7.201461 CCTCTCAATTTTTATCACATTTTGGCG 60.201 37.037 0.00 0.00 0.00 5.69
3508 4554 1.747355 GATCACTTTGCTGGTCCATGG 59.253 52.381 4.97 4.97 0.00 3.66
3668 4714 1.827969 ACTGTACACCCAGATGAGCTC 59.172 52.381 6.82 6.82 36.30 4.09
3669 4715 1.827344 CTGTACACCCAGATGAGCTCA 59.173 52.381 20.79 20.79 34.23 4.26
3692 4738 3.521937 ACGAGGAATTTGATACCTTCCCA 59.478 43.478 0.00 0.00 39.43 4.37
3744 4790 1.337260 GGTATGATAGGCTGAGGTGCG 60.337 57.143 0.00 0.00 0.00 5.34
3783 4829 1.269988 CGGTCATGGGAGATGTAGCAG 60.270 57.143 0.00 0.00 0.00 4.24
3874 4920 1.439679 ACTTTAGCAGCAGCCGTTAC 58.560 50.000 0.00 0.00 43.56 2.50
3876 4922 1.632046 TTTAGCAGCAGCCGTTACGC 61.632 55.000 0.00 0.00 43.56 4.42
3900 4946 4.099824 GTGTTTTACACCGTGGAAAGTTG 58.900 43.478 8.90 0.00 43.05 3.16
3904 4950 1.278637 CACCGTGGAAAGTTGTCGC 59.721 57.895 0.00 0.00 0.00 5.19
3925 4971 1.641577 GCGATGGTTGGACTCTACAC 58.358 55.000 0.00 0.00 0.00 2.90
3979 5025 2.159787 CGTCATTCGCTTGGAACTTCTG 60.160 50.000 0.00 0.00 37.50 3.02
4008 5054 1.525995 CCACACAAGGGCGACAGTT 60.526 57.895 0.00 0.00 0.00 3.16
4023 5069 4.026145 GCGACAGTTTGCTCTGAATATCTC 60.026 45.833 10.13 0.00 38.63 2.75
4024 5070 5.105063 CGACAGTTTGCTCTGAATATCTCA 58.895 41.667 10.13 0.00 38.63 3.27
4039 5085 9.583765 CTGAATATCTCATGTACTATGTGATGG 57.416 37.037 20.75 10.25 35.00 3.51
4079 5125 1.798813 CTGCTCTCGTTTGTGGTAACC 59.201 52.381 0.00 0.00 0.00 2.85
4091 5137 4.584638 TGTGGTAACCATCCTTTGCTAT 57.415 40.909 0.00 0.00 35.28 2.97
4138 5184 3.686726 GGTTGCAACTCTCTCCTGTTATG 59.313 47.826 27.64 0.00 0.00 1.90
4164 5219 0.459489 TTGTGGTTGCAAGACTTGGC 59.541 50.000 16.80 9.52 0.00 4.52
4403 5460 4.257731 TGGCAGTATTTACGAGAAATGCA 58.742 39.130 14.26 0.00 0.00 3.96
4510 5574 1.903877 GCCTCTTGTCCAGCTAGCCA 61.904 60.000 12.13 0.00 0.00 4.75
4557 5639 1.145571 TGCAGGGAGGTTAACCAACT 58.854 50.000 26.26 16.97 38.89 3.16
4809 6091 4.878439 TGTGTATGTGTCTGTGTAGGTTC 58.122 43.478 0.00 0.00 0.00 3.62
4883 6170 1.607628 GGCCGAGTGATCTACGTGTAT 59.392 52.381 0.00 0.00 0.00 2.29
4963 6271 8.902540 ATTATCTTGGTGTTGCTAATCGATTA 57.097 30.769 16.69 16.69 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.982241 TTCATCCTCTTGAAAGTGACCT 57.018 40.909 0.00 0.00 32.82 3.85
2 3 6.039829 AGTTTTTCATCCTCTTGAAAGTGACC 59.960 38.462 0.58 0.00 44.12 4.02
5 6 6.138761 CGAGTTTTTCATCCTCTTGAAAGTG 58.861 40.000 0.58 0.00 44.12 3.16
6 7 5.823045 ACGAGTTTTTCATCCTCTTGAAAGT 59.177 36.000 0.00 0.00 44.12 2.66
8 9 6.990349 ACTACGAGTTTTTCATCCTCTTGAAA 59.010 34.615 0.00 0.00 42.33 2.69
9 10 6.522054 ACTACGAGTTTTTCATCCTCTTGAA 58.478 36.000 0.00 0.00 33.89 2.69
10 11 6.097915 ACTACGAGTTTTTCATCCTCTTGA 57.902 37.500 0.00 0.00 0.00 3.02
11 12 6.423905 TGAACTACGAGTTTTTCATCCTCTTG 59.576 38.462 0.00 0.00 38.80 3.02
12 13 6.522054 TGAACTACGAGTTTTTCATCCTCTT 58.478 36.000 0.00 0.00 38.80 2.85
13 14 6.097915 TGAACTACGAGTTTTTCATCCTCT 57.902 37.500 0.00 0.00 38.80 3.69
14 15 6.424207 AGTTGAACTACGAGTTTTTCATCCTC 59.576 38.462 0.00 0.00 38.80 3.71
15 16 6.289064 AGTTGAACTACGAGTTTTTCATCCT 58.711 36.000 0.00 0.00 38.80 3.24
16 17 6.541111 AGTTGAACTACGAGTTTTTCATCC 57.459 37.500 0.00 0.00 38.80 3.51
17 18 8.295569 ACTAGTTGAACTACGAGTTTTTCATC 57.704 34.615 0.00 0.00 38.80 2.92
18 19 9.754382 TTACTAGTTGAACTACGAGTTTTTCAT 57.246 29.630 0.00 0.00 38.80 2.57
19 20 9.585099 TTTACTAGTTGAACTACGAGTTTTTCA 57.415 29.630 0.00 0.00 38.80 2.69
82 83 9.695526 CTTACTGGATTTCAACATGAATTTCAA 57.304 29.630 0.00 0.00 36.11 2.69
83 84 8.306038 CCTTACTGGATTTCAACATGAATTTCA 58.694 33.333 0.00 0.75 35.40 2.69
84 85 8.522830 TCCTTACTGGATTTCAACATGAATTTC 58.477 33.333 0.00 0.00 40.56 2.17
85 86 8.421249 TCCTTACTGGATTTCAACATGAATTT 57.579 30.769 0.00 0.00 40.56 1.82
86 87 8.421249 TTCCTTACTGGATTTCAACATGAATT 57.579 30.769 0.00 0.00 45.68 2.17
87 88 8.421249 TTTCCTTACTGGATTTCAACATGAAT 57.579 30.769 0.00 0.00 45.68 2.57
88 89 7.831691 TTTCCTTACTGGATTTCAACATGAA 57.168 32.000 0.00 0.00 45.68 2.57
89 90 7.831691 TTTTCCTTACTGGATTTCAACATGA 57.168 32.000 0.00 0.00 45.68 3.07
90 91 8.143835 AGTTTTTCCTTACTGGATTTCAACATG 58.856 33.333 0.00 0.00 45.68 3.21
91 92 8.250143 AGTTTTTCCTTACTGGATTTCAACAT 57.750 30.769 0.00 0.00 45.68 2.71
92 93 7.654022 AGTTTTTCCTTACTGGATTTCAACA 57.346 32.000 0.00 0.00 45.68 3.33
93 94 8.817100 CAAAGTTTTTCCTTACTGGATTTCAAC 58.183 33.333 0.00 0.00 45.68 3.18
94 95 7.984617 CCAAAGTTTTTCCTTACTGGATTTCAA 59.015 33.333 0.00 0.00 45.68 2.69
95 96 7.125053 ACCAAAGTTTTTCCTTACTGGATTTCA 59.875 33.333 0.00 0.00 45.68 2.69
96 97 7.438160 CACCAAAGTTTTTCCTTACTGGATTTC 59.562 37.037 0.00 0.00 45.68 2.17
97 98 7.272244 CACCAAAGTTTTTCCTTACTGGATTT 58.728 34.615 0.00 0.00 45.68 2.17
98 99 6.183360 CCACCAAAGTTTTTCCTTACTGGATT 60.183 38.462 0.00 0.00 45.68 3.01
99 100 5.304357 CCACCAAAGTTTTTCCTTACTGGAT 59.696 40.000 0.00 0.00 45.68 3.41
100 101 4.647399 CCACCAAAGTTTTTCCTTACTGGA 59.353 41.667 0.00 0.00 44.51 3.86
101 102 4.202212 CCCACCAAAGTTTTTCCTTACTGG 60.202 45.833 0.00 0.00 31.44 4.00
102 103 4.202212 CCCCACCAAAGTTTTTCCTTACTG 60.202 45.833 0.00 0.00 0.00 2.74
103 104 3.964688 CCCCACCAAAGTTTTTCCTTACT 59.035 43.478 0.00 0.00 0.00 2.24
104 105 3.962063 TCCCCACCAAAGTTTTTCCTTAC 59.038 43.478 0.00 0.00 0.00 2.34
105 106 4.267341 TCCCCACCAAAGTTTTTCCTTA 57.733 40.909 0.00 0.00 0.00 2.69
106 107 3.123392 TCCCCACCAAAGTTTTTCCTT 57.877 42.857 0.00 0.00 0.00 3.36
107 108 2.858787 TCCCCACCAAAGTTTTTCCT 57.141 45.000 0.00 0.00 0.00 3.36
108 109 3.035363 TCTTCCCCACCAAAGTTTTTCC 58.965 45.455 0.00 0.00 0.00 3.13
109 110 4.746535 TTCTTCCCCACCAAAGTTTTTC 57.253 40.909 0.00 0.00 0.00 2.29
110 111 4.080582 CCTTTCTTCCCCACCAAAGTTTTT 60.081 41.667 0.00 0.00 0.00 1.94
111 112 3.454447 CCTTTCTTCCCCACCAAAGTTTT 59.546 43.478 0.00 0.00 0.00 2.43
112 113 3.038280 CCTTTCTTCCCCACCAAAGTTT 58.962 45.455 0.00 0.00 0.00 2.66
113 114 2.246327 TCCTTTCTTCCCCACCAAAGTT 59.754 45.455 0.00 0.00 0.00 2.66
114 115 1.856920 TCCTTTCTTCCCCACCAAAGT 59.143 47.619 0.00 0.00 0.00 2.66
115 116 2.158460 ACTCCTTTCTTCCCCACCAAAG 60.158 50.000 0.00 0.00 0.00 2.77
116 117 1.856920 ACTCCTTTCTTCCCCACCAAA 59.143 47.619 0.00 0.00 0.00 3.28
117 118 1.529744 ACTCCTTTCTTCCCCACCAA 58.470 50.000 0.00 0.00 0.00 3.67
118 119 2.426431 TACTCCTTTCTTCCCCACCA 57.574 50.000 0.00 0.00 0.00 4.17
119 120 3.621558 CATTACTCCTTTCTTCCCCACC 58.378 50.000 0.00 0.00 0.00 4.61
120 121 3.017442 GCATTACTCCTTTCTTCCCCAC 58.983 50.000 0.00 0.00 0.00 4.61
121 122 2.919602 AGCATTACTCCTTTCTTCCCCA 59.080 45.455 0.00 0.00 0.00 4.96
122 123 3.653835 AGCATTACTCCTTTCTTCCCC 57.346 47.619 0.00 0.00 0.00 4.81
123 124 5.099042 TGTAGCATTACTCCTTTCTTCCC 57.901 43.478 0.00 0.00 0.00 3.97
124 125 6.587273 AGATGTAGCATTACTCCTTTCTTCC 58.413 40.000 0.00 0.00 0.00 3.46
125 126 7.380065 CGTAGATGTAGCATTACTCCTTTCTTC 59.620 40.741 0.00 0.00 0.00 2.87
126 127 7.147880 ACGTAGATGTAGCATTACTCCTTTCTT 60.148 37.037 0.00 0.00 0.00 2.52
127 128 6.321690 ACGTAGATGTAGCATTACTCCTTTCT 59.678 38.462 0.00 0.00 0.00 2.52
128 129 6.505272 ACGTAGATGTAGCATTACTCCTTTC 58.495 40.000 0.00 0.00 0.00 2.62
129 130 6.466885 ACGTAGATGTAGCATTACTCCTTT 57.533 37.500 0.00 0.00 0.00 3.11
130 131 7.578310 TTACGTAGATGTAGCATTACTCCTT 57.422 36.000 0.00 0.00 0.00 3.36
131 132 7.762588 ATTACGTAGATGTAGCATTACTCCT 57.237 36.000 0.00 0.00 0.00 3.69
132 133 7.866393 ACAATTACGTAGATGTAGCATTACTCC 59.134 37.037 12.10 0.00 0.00 3.85
133 134 8.798748 ACAATTACGTAGATGTAGCATTACTC 57.201 34.615 12.10 0.00 0.00 2.59
134 135 9.595823 AAACAATTACGTAGATGTAGCATTACT 57.404 29.630 13.60 0.00 0.00 2.24
162 163 9.897744 CGAAGGGAGTATTACATAAAATACGTA 57.102 33.333 0.00 0.00 43.87 3.57
163 164 8.416329 ACGAAGGGAGTATTACATAAAATACGT 58.584 33.333 0.00 0.00 43.87 3.57
164 165 8.807667 ACGAAGGGAGTATTACATAAAATACG 57.192 34.615 0.00 0.00 43.87 3.06
229 230 9.946165 CCTTAGAAATTTCTGTAGAACGTTTTT 57.054 29.630 27.37 0.00 38.19 1.94
230 231 8.565416 CCCTTAGAAATTTCTGTAGAACGTTTT 58.435 33.333 27.37 0.00 38.19 2.43
231 232 7.308408 GCCCTTAGAAATTTCTGTAGAACGTTT 60.308 37.037 27.37 2.58 38.19 3.60
232 233 6.148976 GCCCTTAGAAATTTCTGTAGAACGTT 59.851 38.462 27.37 0.00 38.19 3.99
233 234 5.642491 GCCCTTAGAAATTTCTGTAGAACGT 59.358 40.000 27.37 3.77 38.19 3.99
234 235 5.642063 TGCCCTTAGAAATTTCTGTAGAACG 59.358 40.000 27.37 15.53 38.19 3.95
235 236 7.448748 TTGCCCTTAGAAATTTCTGTAGAAC 57.551 36.000 27.37 18.14 38.19 3.01
236 237 8.650143 ATTTGCCCTTAGAAATTTCTGTAGAA 57.350 30.769 27.37 14.32 38.19 2.10
237 238 7.888021 TGATTTGCCCTTAGAAATTTCTGTAGA 59.112 33.333 27.37 7.57 38.19 2.59
238 239 8.055279 TGATTTGCCCTTAGAAATTTCTGTAG 57.945 34.615 27.37 22.16 38.19 2.74
239 240 8.593945 ATGATTTGCCCTTAGAAATTTCTGTA 57.406 30.769 27.37 15.50 38.19 2.74
240 241 6.916360 TGATTTGCCCTTAGAAATTTCTGT 57.084 33.333 27.37 7.96 38.19 3.41
241 242 7.549839 TGATGATTTGCCCTTAGAAATTTCTG 58.450 34.615 27.37 13.58 38.19 3.02
242 243 7.722949 TGATGATTTGCCCTTAGAAATTTCT 57.277 32.000 23.53 23.53 41.24 2.52
243 244 8.776376 TTTGATGATTTGCCCTTAGAAATTTC 57.224 30.769 10.33 10.33 0.00 2.17
244 245 9.002600 GTTTTGATGATTTGCCCTTAGAAATTT 57.997 29.630 0.00 0.00 0.00 1.82
245 246 7.607607 GGTTTTGATGATTTGCCCTTAGAAATT 59.392 33.333 0.00 0.00 0.00 1.82
246 247 7.038088 AGGTTTTGATGATTTGCCCTTAGAAAT 60.038 33.333 0.00 0.00 0.00 2.17
247 248 6.269769 AGGTTTTGATGATTTGCCCTTAGAAA 59.730 34.615 0.00 0.00 0.00 2.52
248 249 5.779771 AGGTTTTGATGATTTGCCCTTAGAA 59.220 36.000 0.00 0.00 0.00 2.10
249 250 5.332743 AGGTTTTGATGATTTGCCCTTAGA 58.667 37.500 0.00 0.00 0.00 2.10
250 251 5.665916 AGGTTTTGATGATTTGCCCTTAG 57.334 39.130 0.00 0.00 0.00 2.18
251 252 7.546250 TTTAGGTTTTGATGATTTGCCCTTA 57.454 32.000 0.00 0.00 0.00 2.69
252 253 6.432403 TTTAGGTTTTGATGATTTGCCCTT 57.568 33.333 0.00 0.00 0.00 3.95
253 254 6.432403 TTTTAGGTTTTGATGATTTGCCCT 57.568 33.333 0.00 0.00 0.00 5.19
254 255 7.148255 GGATTTTTAGGTTTTGATGATTTGCCC 60.148 37.037 0.00 0.00 0.00 5.36
255 256 7.148255 GGGATTTTTAGGTTTTGATGATTTGCC 60.148 37.037 0.00 0.00 0.00 4.52
256 257 7.148255 GGGGATTTTTAGGTTTTGATGATTTGC 60.148 37.037 0.00 0.00 0.00 3.68
257 258 7.064490 CGGGGATTTTTAGGTTTTGATGATTTG 59.936 37.037 0.00 0.00 0.00 2.32
258 259 7.102993 CGGGGATTTTTAGGTTTTGATGATTT 58.897 34.615 0.00 0.00 0.00 2.17
259 260 6.212589 ACGGGGATTTTTAGGTTTTGATGATT 59.787 34.615 0.00 0.00 0.00 2.57
260 261 5.719563 ACGGGGATTTTTAGGTTTTGATGAT 59.280 36.000 0.00 0.00 0.00 2.45
261 262 5.047660 CACGGGGATTTTTAGGTTTTGATGA 60.048 40.000 0.00 0.00 0.00 2.92
262 263 5.167845 CACGGGGATTTTTAGGTTTTGATG 58.832 41.667 0.00 0.00 0.00 3.07
263 264 4.836175 ACACGGGGATTTTTAGGTTTTGAT 59.164 37.500 0.00 0.00 0.00 2.57
264 265 4.216708 ACACGGGGATTTTTAGGTTTTGA 58.783 39.130 0.00 0.00 0.00 2.69
265 266 4.594123 ACACGGGGATTTTTAGGTTTTG 57.406 40.909 0.00 0.00 0.00 2.44
266 267 4.216042 CGTACACGGGGATTTTTAGGTTTT 59.784 41.667 0.00 0.00 35.37 2.43
267 268 3.752747 CGTACACGGGGATTTTTAGGTTT 59.247 43.478 0.00 0.00 35.37 3.27
268 269 3.337358 CGTACACGGGGATTTTTAGGTT 58.663 45.455 0.00 0.00 35.37 3.50
269 270 2.976589 CGTACACGGGGATTTTTAGGT 58.023 47.619 0.00 0.00 35.37 3.08
282 283 2.350522 AGAGTAGGTACACCGTACACG 58.649 52.381 6.62 0.00 42.08 4.49
283 284 3.623510 GGTAGAGTAGGTACACCGTACAC 59.376 52.174 6.62 0.00 42.08 2.90
284 285 3.263170 TGGTAGAGTAGGTACACCGTACA 59.737 47.826 6.62 0.00 42.08 2.90
285 286 3.623510 GTGGTAGAGTAGGTACACCGTAC 59.376 52.174 0.00 0.00 42.08 3.67
286 287 3.370527 GGTGGTAGAGTAGGTACACCGTA 60.371 52.174 0.00 0.00 42.08 4.02
287 288 2.619074 GGTGGTAGAGTAGGTACACCGT 60.619 54.545 0.00 0.00 42.08 4.83
288 289 2.019984 GGTGGTAGAGTAGGTACACCG 58.980 57.143 0.00 0.00 42.08 4.94
289 290 2.019984 CGGTGGTAGAGTAGGTACACC 58.980 57.143 0.00 0.00 0.00 4.16
290 291 2.421424 CACGGTGGTAGAGTAGGTACAC 59.579 54.545 0.00 0.00 0.00 2.90
291 292 2.618816 CCACGGTGGTAGAGTAGGTACA 60.619 54.545 19.15 0.00 31.35 2.90
292 293 2.019984 CCACGGTGGTAGAGTAGGTAC 58.980 57.143 19.15 0.00 31.35 3.34
293 294 2.425143 CCACGGTGGTAGAGTAGGTA 57.575 55.000 19.15 0.00 31.35 3.08
294 295 3.277962 CCACGGTGGTAGAGTAGGT 57.722 57.895 19.15 0.00 31.35 3.08
306 307 2.341176 GGTCGCAGTTACCACGGT 59.659 61.111 0.00 0.00 36.96 4.83
339 340 1.815421 CTCGGAATTGGGGTCAGCG 60.815 63.158 0.00 0.00 0.00 5.18
340 341 1.026718 CACTCGGAATTGGGGTCAGC 61.027 60.000 0.00 0.00 0.00 4.26
341 342 0.392998 CCACTCGGAATTGGGGTCAG 60.393 60.000 0.00 0.00 0.00 3.51
426 450 4.143333 CGTAGGTGGGGTCAGCGG 62.143 72.222 0.00 0.00 45.29 5.52
427 451 3.352338 GACGTAGGTGGGGTCAGCG 62.352 68.421 0.00 0.00 45.29 5.18
428 452 2.577593 GACGTAGGTGGGGTCAGC 59.422 66.667 0.00 0.00 41.37 4.26
429 453 2.707849 CCGACGTAGGTGGGGTCAG 61.708 68.421 6.53 0.00 38.30 3.51
430 454 2.135903 TACCGACGTAGGTGGGGTCA 62.136 60.000 28.16 6.13 45.53 4.02
431 455 0.753111 ATACCGACGTAGGTGGGGTC 60.753 60.000 28.16 0.00 45.53 4.46
432 456 0.550914 TATACCGACGTAGGTGGGGT 59.449 55.000 28.16 14.97 45.53 4.95
433 457 1.202806 TCTATACCGACGTAGGTGGGG 60.203 57.143 28.16 17.12 45.53 4.96
434 458 2.149578 CTCTATACCGACGTAGGTGGG 58.850 57.143 28.16 17.43 45.54 4.61
435 459 3.117491 TCTCTATACCGACGTAGGTGG 57.883 52.381 28.16 17.74 45.54 4.61
436 460 5.295292 TCTTTTCTCTATACCGACGTAGGTG 59.705 44.000 28.16 13.27 45.54 4.00
438 462 5.998454 TCTTTTCTCTATACCGACGTAGG 57.002 43.478 13.72 13.72 37.30 3.18
439 463 7.041235 AGGATTCTTTTCTCTATACCGACGTAG 60.041 40.741 0.00 0.00 0.00 3.51
440 464 6.769822 AGGATTCTTTTCTCTATACCGACGTA 59.230 38.462 0.00 0.00 0.00 3.57
441 465 5.593502 AGGATTCTTTTCTCTATACCGACGT 59.406 40.000 0.00 0.00 0.00 4.34
442 466 5.915758 CAGGATTCTTTTCTCTATACCGACG 59.084 44.000 0.00 0.00 0.00 5.12
443 467 5.692654 GCAGGATTCTTTTCTCTATACCGAC 59.307 44.000 0.00 0.00 0.00 4.79
444 468 5.221461 GGCAGGATTCTTTTCTCTATACCGA 60.221 44.000 0.00 0.00 0.00 4.69
445 469 4.991687 GGCAGGATTCTTTTCTCTATACCG 59.008 45.833 0.00 0.00 0.00 4.02
446 470 4.991687 CGGCAGGATTCTTTTCTCTATACC 59.008 45.833 0.00 0.00 0.00 2.73
447 471 4.449405 GCGGCAGGATTCTTTTCTCTATAC 59.551 45.833 0.00 0.00 0.00 1.47
448 472 4.632153 GCGGCAGGATTCTTTTCTCTATA 58.368 43.478 0.00 0.00 0.00 1.31
449 473 3.471680 GCGGCAGGATTCTTTTCTCTAT 58.528 45.455 0.00 0.00 0.00 1.98
450 474 2.738643 CGCGGCAGGATTCTTTTCTCTA 60.739 50.000 0.00 0.00 0.00 2.43
451 475 1.743996 GCGGCAGGATTCTTTTCTCT 58.256 50.000 0.00 0.00 0.00 3.10
452 476 0.375106 CGCGGCAGGATTCTTTTCTC 59.625 55.000 0.00 0.00 0.00 2.87
453 477 1.648467 GCGCGGCAGGATTCTTTTCT 61.648 55.000 8.83 0.00 0.00 2.52
454 478 1.226407 GCGCGGCAGGATTCTTTTC 60.226 57.895 8.83 0.00 0.00 2.29
455 479 2.700773 GGCGCGGCAGGATTCTTTT 61.701 57.895 29.32 0.00 0.00 2.27
456 480 3.134127 GGCGCGGCAGGATTCTTT 61.134 61.111 29.32 0.00 0.00 2.52
473 497 4.856607 GACGGCGAGCTTCCTCCG 62.857 72.222 16.62 13.02 46.61 4.63
474 498 4.856607 CGACGGCGAGCTTCCTCC 62.857 72.222 16.62 0.00 40.82 4.30
475 499 4.117661 ACGACGGCGAGCTTCCTC 62.118 66.667 22.49 0.00 41.64 3.71
476 500 4.117661 GACGACGGCGAGCTTCCT 62.118 66.667 22.49 0.00 41.64 3.36
497 521 3.059597 CCATGTCGATTAGAATTCGGCAC 60.060 47.826 2.23 0.00 44.20 5.01
498 522 3.130633 CCATGTCGATTAGAATTCGGCA 58.869 45.455 2.70 2.70 45.45 5.69
499 523 2.480419 CCCATGTCGATTAGAATTCGGC 59.520 50.000 0.00 0.00 0.00 5.54
500 524 3.067106 CCCCATGTCGATTAGAATTCGG 58.933 50.000 0.00 0.00 0.00 4.30
501 525 3.990092 TCCCCATGTCGATTAGAATTCG 58.010 45.455 0.00 0.00 0.00 3.34
502 526 6.347725 CGAAATCCCCATGTCGATTAGAATTC 60.348 42.308 0.00 0.00 41.73 2.17
503 527 5.470098 CGAAATCCCCATGTCGATTAGAATT 59.530 40.000 5.25 0.00 41.73 2.17
504 528 4.997395 CGAAATCCCCATGTCGATTAGAAT 59.003 41.667 5.25 0.00 41.73 2.40
505 529 4.377021 CGAAATCCCCATGTCGATTAGAA 58.623 43.478 5.25 0.00 41.73 2.10
506 530 3.802329 GCGAAATCCCCATGTCGATTAGA 60.802 47.826 5.44 0.00 41.73 2.10
507 531 2.480419 GCGAAATCCCCATGTCGATTAG 59.520 50.000 5.44 4.83 41.73 1.73
508 532 2.158885 TGCGAAATCCCCATGTCGATTA 60.159 45.455 5.44 0.00 41.73 1.75
509 533 1.308998 GCGAAATCCCCATGTCGATT 58.691 50.000 5.44 2.56 41.73 3.34
510 534 0.180171 TGCGAAATCCCCATGTCGAT 59.820 50.000 5.44 0.00 41.73 3.59
511 535 0.461870 CTGCGAAATCCCCATGTCGA 60.462 55.000 5.44 0.00 41.73 4.20
512 536 0.461870 TCTGCGAAATCCCCATGTCG 60.462 55.000 0.00 0.00 42.04 4.35
513 537 1.303309 CTCTGCGAAATCCCCATGTC 58.697 55.000 0.00 0.00 0.00 3.06
514 538 0.107017 CCTCTGCGAAATCCCCATGT 60.107 55.000 0.00 0.00 0.00 3.21
515 539 0.181114 TCCTCTGCGAAATCCCCATG 59.819 55.000 0.00 0.00 0.00 3.66
516 540 0.471617 CTCCTCTGCGAAATCCCCAT 59.528 55.000 0.00 0.00 0.00 4.00
517 541 0.617535 TCTCCTCTGCGAAATCCCCA 60.618 55.000 0.00 0.00 0.00 4.96
518 542 0.541863 TTCTCCTCTGCGAAATCCCC 59.458 55.000 0.00 0.00 0.00 4.81
519 543 1.482593 TCTTCTCCTCTGCGAAATCCC 59.517 52.381 0.00 0.00 0.00 3.85
520 544 2.969628 TCTTCTCCTCTGCGAAATCC 57.030 50.000 0.00 0.00 0.00 3.01
521 545 3.862845 GTCTTCTTCTCCTCTGCGAAATC 59.137 47.826 0.00 0.00 0.00 2.17
522 546 3.674682 CGTCTTCTTCTCCTCTGCGAAAT 60.675 47.826 0.00 0.00 0.00 2.17
523 547 2.351835 CGTCTTCTTCTCCTCTGCGAAA 60.352 50.000 0.00 0.00 0.00 3.46
524 548 1.200252 CGTCTTCTTCTCCTCTGCGAA 59.800 52.381 0.00 0.00 0.00 4.70
525 549 0.805614 CGTCTTCTTCTCCTCTGCGA 59.194 55.000 0.00 0.00 0.00 5.10
526 550 0.523966 ACGTCTTCTTCTCCTCTGCG 59.476 55.000 0.00 0.00 0.00 5.18
527 551 2.288518 ACAACGTCTTCTTCTCCTCTGC 60.289 50.000 0.00 0.00 0.00 4.26
528 552 3.651803 ACAACGTCTTCTTCTCCTCTG 57.348 47.619 0.00 0.00 0.00 3.35
529 553 4.674281 AAACAACGTCTTCTTCTCCTCT 57.326 40.909 0.00 0.00 0.00 3.69
530 554 5.736486 AAAAACAACGTCTTCTTCTCCTC 57.264 39.130 0.00 0.00 0.00 3.71
549 573 6.811170 ACGAATCTCAAAGCAACAAAGAAAAA 59.189 30.769 0.00 0.00 0.00 1.94
550 574 6.329496 ACGAATCTCAAAGCAACAAAGAAAA 58.671 32.000 0.00 0.00 0.00 2.29
551 575 5.890334 ACGAATCTCAAAGCAACAAAGAAA 58.110 33.333 0.00 0.00 0.00 2.52
552 576 5.499139 ACGAATCTCAAAGCAACAAAGAA 57.501 34.783 0.00 0.00 0.00 2.52
553 577 6.612247 TTACGAATCTCAAAGCAACAAAGA 57.388 33.333 0.00 0.00 0.00 2.52
554 578 7.061094 GGATTTACGAATCTCAAAGCAACAAAG 59.939 37.037 0.00 0.00 41.18 2.77
555 579 6.861055 GGATTTACGAATCTCAAAGCAACAAA 59.139 34.615 0.00 0.00 41.18 2.83
556 580 6.016693 TGGATTTACGAATCTCAAAGCAACAA 60.017 34.615 0.00 0.00 41.18 2.83
557 581 5.471797 TGGATTTACGAATCTCAAAGCAACA 59.528 36.000 0.00 0.00 41.18 3.33
558 582 5.795441 GTGGATTTACGAATCTCAAAGCAAC 59.205 40.000 0.00 0.00 41.18 4.17
559 583 5.390461 CGTGGATTTACGAATCTCAAAGCAA 60.390 40.000 0.00 0.00 46.46 3.91
560 584 4.092821 CGTGGATTTACGAATCTCAAAGCA 59.907 41.667 0.00 0.00 46.46 3.91
561 585 4.092968 ACGTGGATTTACGAATCTCAAAGC 59.907 41.667 5.23 0.00 46.46 3.51
562 586 5.120208 ACACGTGGATTTACGAATCTCAAAG 59.880 40.000 21.57 0.00 46.46 2.77
563 587 4.992319 ACACGTGGATTTACGAATCTCAAA 59.008 37.500 21.57 0.00 46.46 2.69
564 588 4.562082 ACACGTGGATTTACGAATCTCAA 58.438 39.130 21.57 0.00 46.46 3.02
565 589 4.171005 GACACGTGGATTTACGAATCTCA 58.829 43.478 21.57 0.00 46.46 3.27
566 590 4.171005 TGACACGTGGATTTACGAATCTC 58.829 43.478 21.57 3.75 46.46 2.75
567 591 4.174009 CTGACACGTGGATTTACGAATCT 58.826 43.478 21.57 0.00 46.46 2.40
568 592 3.241995 GCTGACACGTGGATTTACGAATC 60.242 47.826 21.57 4.51 46.46 2.52
569 593 2.671396 GCTGACACGTGGATTTACGAAT 59.329 45.455 21.57 0.00 46.46 3.34
570 594 2.063266 GCTGACACGTGGATTTACGAA 58.937 47.619 21.57 0.00 46.46 3.85
571 595 1.271379 AGCTGACACGTGGATTTACGA 59.729 47.619 21.57 0.00 46.46 3.43
573 597 1.732259 CCAGCTGACACGTGGATTTAC 59.268 52.381 21.57 4.00 32.60 2.01
574 598 1.346395 ACCAGCTGACACGTGGATTTA 59.654 47.619 21.57 0.00 35.17 1.40
575 599 0.108585 ACCAGCTGACACGTGGATTT 59.891 50.000 21.57 0.00 35.17 2.17
576 600 0.320771 GACCAGCTGACACGTGGATT 60.321 55.000 21.57 0.00 35.17 3.01
577 601 1.293498 GACCAGCTGACACGTGGAT 59.707 57.895 21.57 0.00 35.17 3.41
578 602 2.734591 GACCAGCTGACACGTGGA 59.265 61.111 21.57 4.84 35.17 4.02
579 603 2.492449 ATCGACCAGCTGACACGTGG 62.492 60.000 21.57 5.88 37.38 4.94
580 604 1.080501 ATCGACCAGCTGACACGTG 60.081 57.895 17.39 15.48 0.00 4.49
581 605 1.080501 CATCGACCAGCTGACACGT 60.081 57.895 17.39 3.76 0.00 4.49
582 606 1.807165 CCATCGACCAGCTGACACG 60.807 63.158 17.39 16.88 0.00 4.49
583 607 1.448540 CCCATCGACCAGCTGACAC 60.449 63.158 17.39 4.99 0.00 3.67
584 608 2.659063 CCCCATCGACCAGCTGACA 61.659 63.158 17.39 0.00 0.00 3.58
585 609 2.187946 CCCCATCGACCAGCTGAC 59.812 66.667 17.39 8.06 0.00 3.51
586 610 2.284625 ACCCCATCGACCAGCTGA 60.285 61.111 17.39 0.00 0.00 4.26
587 611 2.187946 GACCCCATCGACCAGCTG 59.812 66.667 6.78 6.78 0.00 4.24
588 612 2.039624 AGACCCCATCGACCAGCT 59.960 61.111 0.00 0.00 0.00 4.24
589 613 1.690219 ATGAGACCCCATCGACCAGC 61.690 60.000 0.00 0.00 0.00 4.85
590 614 0.105593 CATGAGACCCCATCGACCAG 59.894 60.000 0.00 0.00 0.00 4.00
591 615 0.325203 TCATGAGACCCCATCGACCA 60.325 55.000 0.00 0.00 0.00 4.02
592 616 0.390860 CTCATGAGACCCCATCGACC 59.609 60.000 18.34 0.00 0.00 4.79
593 617 1.403814 TCTCATGAGACCCCATCGAC 58.596 55.000 21.67 0.00 31.41 4.20
594 618 1.966354 CATCTCATGAGACCCCATCGA 59.034 52.381 27.37 2.62 40.75 3.59
595 619 1.966354 TCATCTCATGAGACCCCATCG 59.034 52.381 27.37 10.06 40.75 3.84
596 620 3.495806 GGTTCATCTCATGAGACCCCATC 60.496 52.174 27.37 14.70 40.75 3.51
597 621 2.441001 GGTTCATCTCATGAGACCCCAT 59.559 50.000 27.37 8.80 40.75 4.00
598 622 1.839994 GGTTCATCTCATGAGACCCCA 59.160 52.381 27.37 9.36 40.75 4.96
599 623 1.202580 CGGTTCATCTCATGAGACCCC 60.203 57.143 27.37 20.70 40.75 4.95
600 624 1.482593 ACGGTTCATCTCATGAGACCC 59.517 52.381 27.37 21.01 40.75 4.46
601 625 2.969628 ACGGTTCATCTCATGAGACC 57.030 50.000 27.37 21.71 40.75 3.85
602 626 3.064958 TCGTACGGTTCATCTCATGAGAC 59.935 47.826 27.37 14.93 40.75 3.36
603 627 3.064958 GTCGTACGGTTCATCTCATGAGA 59.935 47.826 27.03 27.03 40.94 3.27
604 628 3.364062 GTCGTACGGTTCATCTCATGAG 58.636 50.000 17.07 17.07 40.94 2.90
605 629 2.098607 GGTCGTACGGTTCATCTCATGA 59.901 50.000 16.52 0.00 37.55 3.07
606 630 2.159296 TGGTCGTACGGTTCATCTCATG 60.159 50.000 16.52 0.00 0.00 3.07
607 631 2.097036 TGGTCGTACGGTTCATCTCAT 58.903 47.619 16.52 0.00 0.00 2.90
608 632 1.471287 CTGGTCGTACGGTTCATCTCA 59.529 52.381 16.52 2.18 0.00 3.27
609 633 1.202268 CCTGGTCGTACGGTTCATCTC 60.202 57.143 16.52 0.00 0.00 2.75
610 634 0.815734 CCTGGTCGTACGGTTCATCT 59.184 55.000 16.52 0.00 0.00 2.90
611 635 0.529378 ACCTGGTCGTACGGTTCATC 59.471 55.000 16.52 0.00 0.00 2.92
612 636 0.529378 GACCTGGTCGTACGGTTCAT 59.471 55.000 16.52 0.00 0.00 2.57
613 637 1.959085 GACCTGGTCGTACGGTTCA 59.041 57.895 16.52 10.26 0.00 3.18
614 638 4.876652 GACCTGGTCGTACGGTTC 57.123 61.111 16.52 6.46 0.00 3.62
622 646 6.040878 AAGAAAATCTTATACGACCTGGTCG 58.959 40.000 39.25 39.25 46.77 4.79
623 647 6.479331 GGAAGAAAATCTTATACGACCTGGTC 59.521 42.308 16.99 16.99 36.73 4.02
624 648 6.346896 GGAAGAAAATCTTATACGACCTGGT 58.653 40.000 0.00 0.00 36.73 4.00
625 649 5.758784 GGGAAGAAAATCTTATACGACCTGG 59.241 44.000 0.00 0.00 36.73 4.45
626 650 5.462398 CGGGAAGAAAATCTTATACGACCTG 59.538 44.000 0.00 0.00 36.73 4.00
627 651 5.128335 ACGGGAAGAAAATCTTATACGACCT 59.872 40.000 13.67 0.00 36.73 3.85
628 652 5.354767 ACGGGAAGAAAATCTTATACGACC 58.645 41.667 13.67 2.61 36.73 4.79
629 653 7.043125 GGTTACGGGAAGAAAATCTTATACGAC 60.043 40.741 13.67 6.05 36.73 4.34
630 654 6.980397 GGTTACGGGAAGAAAATCTTATACGA 59.020 38.462 13.67 0.00 36.73 3.43
631 655 6.982724 AGGTTACGGGAAGAAAATCTTATACG 59.017 38.462 0.00 1.73 36.73 3.06
632 656 7.983484 TGAGGTTACGGGAAGAAAATCTTATAC 59.017 37.037 0.00 0.00 36.73 1.47
633 657 8.081517 TGAGGTTACGGGAAGAAAATCTTATA 57.918 34.615 0.00 0.00 36.73 0.98
634 658 6.954232 TGAGGTTACGGGAAGAAAATCTTAT 58.046 36.000 0.00 0.00 36.73 1.73
635 659 6.363167 TGAGGTTACGGGAAGAAAATCTTA 57.637 37.500 0.00 0.00 36.73 2.10
636 660 5.237236 TGAGGTTACGGGAAGAAAATCTT 57.763 39.130 0.00 0.00 39.87 2.40
637 661 4.903045 TGAGGTTACGGGAAGAAAATCT 57.097 40.909 0.00 0.00 0.00 2.40
638 662 5.472478 AGTTTGAGGTTACGGGAAGAAAATC 59.528 40.000 0.00 0.00 0.00 2.17
639 663 5.382616 AGTTTGAGGTTACGGGAAGAAAAT 58.617 37.500 0.00 0.00 0.00 1.82
640 664 4.784177 AGTTTGAGGTTACGGGAAGAAAA 58.216 39.130 0.00 0.00 0.00 2.29
641 665 4.426736 AGTTTGAGGTTACGGGAAGAAA 57.573 40.909 0.00 0.00 0.00 2.52
642 666 4.834496 TCTAGTTTGAGGTTACGGGAAGAA 59.166 41.667 0.00 0.00 0.00 2.52
643 667 4.219288 GTCTAGTTTGAGGTTACGGGAAGA 59.781 45.833 0.00 0.00 0.00 2.87
644 668 4.492611 GTCTAGTTTGAGGTTACGGGAAG 58.507 47.826 0.00 0.00 0.00 3.46
645 669 3.057315 CGTCTAGTTTGAGGTTACGGGAA 60.057 47.826 0.00 0.00 0.00 3.97
646 670 2.489329 CGTCTAGTTTGAGGTTACGGGA 59.511 50.000 0.00 0.00 0.00 5.14
647 671 2.872370 CGTCTAGTTTGAGGTTACGGG 58.128 52.381 0.00 0.00 0.00 5.28
648 672 2.094854 AGCGTCTAGTTTGAGGTTACGG 60.095 50.000 0.00 0.00 0.00 4.02
653 677 0.037232 GGCAGCGTCTAGTTTGAGGT 60.037 55.000 0.00 0.00 0.00 3.85
731 755 3.127533 GCGGTCGCAATGGAAGCT 61.128 61.111 10.67 0.00 41.49 3.74
748 772 4.812476 TTGCTCGGACGGCGGATG 62.812 66.667 13.24 0.00 0.00 3.51
749 773 4.514577 CTTGCTCGGACGGCGGAT 62.515 66.667 13.24 0.00 0.00 4.18
846 870 2.125512 ATCGGTGGCAGAACTCGC 60.126 61.111 0.00 0.00 0.00 5.03
885 909 1.268079 GAGGAAAACTGAAGCACCTGC 59.732 52.381 0.00 0.00 42.49 4.85
937 961 1.418373 GCCTGCGTTTTGGATTGAAC 58.582 50.000 0.00 0.00 0.00 3.18
998 2040 6.038714 GGAACAAGTAATCTCACCAATCATCC 59.961 42.308 0.00 0.00 0.00 3.51
1001 2043 4.935205 CGGAACAAGTAATCTCACCAATCA 59.065 41.667 0.00 0.00 0.00 2.57
1019 2061 4.916870 ACAAAAGCTAACTGAAACGGAAC 58.083 39.130 0.00 0.00 0.00 3.62
1061 2103 7.174080 TGAACCATGTTCGAATAAATTCTGACA 59.826 33.333 0.00 9.14 35.38 3.58
1069 2111 7.921786 ATCTTCTGAACCATGTTCGAATAAA 57.078 32.000 0.00 0.00 0.00 1.40
1076 2118 5.819379 TCAGCATATCTTCTGAACCATGTTC 59.181 40.000 0.07 0.07 36.50 3.18
1166 2211 7.614583 AGCAAACAGTAGAATACCACTACTAGA 59.385 37.037 0.00 0.00 45.58 2.43
1174 2219 4.968259 ACACAGCAAACAGTAGAATACCA 58.032 39.130 0.00 0.00 44.47 3.25
1206 2251 8.692682 ATGGCCTAGGAGAATAAATTAGATCT 57.307 34.615 14.75 0.00 0.00 2.75
1210 2255 7.772757 GGATGATGGCCTAGGAGAATAAATTAG 59.227 40.741 14.75 0.00 0.00 1.73
1223 2269 2.236644 CTGGATCTGGATGATGGCCTAG 59.763 54.545 3.32 0.00 35.14 3.02
1240 2286 9.231297 AGAATTTCATAATTTCTTCGAACTGGA 57.769 29.630 0.00 0.00 34.16 3.86
1241 2287 9.846248 AAGAATTTCATAATTTCTTCGAACTGG 57.154 29.630 0.00 0.00 34.16 4.00
1263 2309 6.603940 ATGGCCTGCAAAAGTTAATAAGAA 57.396 33.333 3.32 0.00 0.00 2.52
1266 2312 8.072321 TGATTATGGCCTGCAAAAGTTAATAA 57.928 30.769 3.32 0.00 0.00 1.40
1272 2318 2.762327 CCTGATTATGGCCTGCAAAAGT 59.238 45.455 3.32 0.00 0.00 2.66
1330 2376 0.517316 GGCGCTTACAACTTCCACAG 59.483 55.000 7.64 0.00 0.00 3.66
1378 2424 0.034059 AAGCTCAACACAGGGACTCG 59.966 55.000 0.00 0.00 34.60 4.18
1392 2438 1.081175 GGCCAGCAAAACGAAGCTC 60.081 57.895 0.00 0.00 39.50 4.09
1793 2839 2.874849 CATTTACGCCCAACAATCACC 58.125 47.619 0.00 0.00 0.00 4.02
1794 2840 2.094752 AGCATTTACGCCCAACAATCAC 60.095 45.455 0.00 0.00 0.00 3.06
1810 2856 4.024387 CCACACGTACAAACAAGTAGCATT 60.024 41.667 0.00 0.00 0.00 3.56
1932 2978 3.672295 CTGGGTTCTGCTCCTCGGC 62.672 68.421 0.00 0.00 0.00 5.54
1934 2980 1.254284 ACTCTGGGTTCTGCTCCTCG 61.254 60.000 0.00 0.00 0.00 4.63
2015 3061 2.074547 ACCCGTCATAGACAACAACG 57.925 50.000 0.00 0.00 32.09 4.10
2190 3236 1.669779 GAATGCCTCATCAGACTGCAC 59.330 52.381 0.00 0.00 34.33 4.57
2228 3274 1.142097 GCTCGCCTCTAACCAGTCC 59.858 63.158 0.00 0.00 0.00 3.85
2282 3328 0.546747 ACCACAGCCTGGGTAAGCTA 60.547 55.000 0.00 0.00 45.78 3.32
2284 3330 1.675641 CACCACAGCCTGGGTAAGC 60.676 63.158 0.00 0.00 45.78 3.09
2339 3385 4.523943 ACAATTTTGCTTCCACATGCTAGA 59.476 37.500 0.00 0.00 0.00 2.43
2589 3635 0.103390 TCGAGTTTGGCAGACGACAA 59.897 50.000 2.18 0.00 38.83 3.18
2601 3647 1.825090 TGCCATTGATGCTCGAGTTT 58.175 45.000 15.13 1.15 0.00 2.66
2682 3728 1.600957 GAGATGAATGTGGCACGATGG 59.399 52.381 13.77 0.00 0.00 3.51
2692 3738 3.110705 AGGCAGGTAGTGAGATGAATGT 58.889 45.455 0.00 0.00 0.00 2.71
2813 3859 0.559205 TTATAGGAGGCAGACCCCGA 59.441 55.000 0.00 0.00 36.11 5.14
2819 3865 6.415573 GTCTTTCCTTTTTATAGGAGGCAGA 58.584 40.000 0.00 0.00 44.82 4.26
2841 3887 0.734942 TGCGACGAAAATCTCCCGTC 60.735 55.000 0.00 0.00 46.27 4.79
2843 3889 0.577269 GATGCGACGAAAATCTCCCG 59.423 55.000 0.00 0.00 0.00 5.14
2852 3898 2.607180 CACACAATATGGATGCGACGAA 59.393 45.455 0.00 0.00 0.00 3.85
2875 3921 1.672854 CCACTTCCGGCCGTATCTCA 61.673 60.000 26.12 0.00 0.00 3.27
2882 3928 4.807039 CGTACCCACTTCCGGCCG 62.807 72.222 21.04 21.04 0.00 6.13
2924 3970 3.330701 ACTGCTCTTGGAATAAAGGGTCA 59.669 43.478 0.00 0.00 29.74 4.02
2927 3973 5.104259 AGTACTGCTCTTGGAATAAAGGG 57.896 43.478 0.00 0.00 0.00 3.95
2977 4023 1.806542 CAAACACTCCAACGATCAGGG 59.193 52.381 0.00 0.00 0.00 4.45
2999 4045 0.038744 ACTCTTCCACCTGGGCATTG 59.961 55.000 0.00 0.00 36.21 2.82
3031 4077 3.259064 CCTATGTTGACACCCTTGTACG 58.741 50.000 0.00 0.00 35.47 3.67
3137 4183 3.315191 ACAGTTCACCCATTTTCTTCACG 59.685 43.478 0.00 0.00 0.00 4.35
3179 4225 6.183359 GCACCATGTTCGTTAATGATTTTGAC 60.183 38.462 0.00 0.00 0.00 3.18
3194 4240 2.032030 GCCATACATACGCACCATGTTC 60.032 50.000 0.73 0.00 37.74 3.18
3245 4291 1.649321 TCAGAATCTGCAGTGGGTCT 58.351 50.000 14.67 9.22 0.00 3.85
3281 4327 1.100510 CCACAATCTGGACAGCATGG 58.899 55.000 0.00 0.00 43.95 3.66
3333 4379 2.224744 TGTATTCCACTGCTTCCTTGCA 60.225 45.455 0.00 0.00 41.05 4.08
3422 4468 6.855763 AATGTGATAAAAATTGAGAGGGCA 57.144 33.333 0.00 0.00 0.00 5.36
3434 4480 2.600731 CGCCGCCAAAATGTGATAAAA 58.399 42.857 0.00 0.00 0.00 1.52
3435 4481 1.135257 CCGCCGCCAAAATGTGATAAA 60.135 47.619 0.00 0.00 0.00 1.40
3437 4483 0.678366 ACCGCCGCCAAAATGTGATA 60.678 50.000 0.00 0.00 0.00 2.15
3451 4497 3.500680 TGAACAAACATAGAGAAACCGCC 59.499 43.478 0.00 0.00 0.00 6.13
3508 4554 7.148390 GGAACATAAGAGCTAAGAGGAAAACAC 60.148 40.741 0.00 0.00 0.00 3.32
3668 4714 4.335594 GGGAAGGTATCAAATTCCTCGTTG 59.664 45.833 3.44 0.00 41.85 4.10
3669 4715 4.018779 TGGGAAGGTATCAAATTCCTCGTT 60.019 41.667 3.44 0.00 41.85 3.85
3692 4738 5.243283 TGTTAAACTAGAGCTCCGAGAAGTT 59.757 40.000 17.84 13.10 0.00 2.66
3744 4790 1.373570 GTCTGTATCCTGCTGGCAAC 58.626 55.000 4.42 6.04 0.00 4.17
3783 4829 1.144716 TGATCCTCTCGCCACATGC 59.855 57.895 0.00 0.00 0.00 4.06
3851 4897 1.804748 ACGGCTGCTGCTAAAGTAAAC 59.195 47.619 15.64 0.00 39.59 2.01
3897 4943 3.419759 AACCATCGCGGCGACAAC 61.420 61.111 28.88 0.00 39.18 3.32
3904 4950 0.527817 GTAGAGTCCAACCATCGCGG 60.528 60.000 6.13 0.00 42.50 6.46
3925 4971 2.757099 GCTTGGGGTGCCTCATGG 60.757 66.667 6.19 0.00 0.00 3.66
4008 5054 8.864087 ACATAGTACATGAGATATTCAGAGCAA 58.136 33.333 0.00 0.00 39.68 3.91
4023 5069 5.065235 TCAATGGCCATCACATAGTACATG 58.935 41.667 21.08 9.03 0.00 3.21
4024 5070 5.163163 ACTCAATGGCCATCACATAGTACAT 60.163 40.000 21.08 0.00 0.00 2.29
4039 5085 1.654954 CCAGCAGCAGACTCAATGGC 61.655 60.000 0.00 0.00 0.00 4.40
4079 5125 8.299570 AGAAACAGTACAAAATAGCAAAGGATG 58.700 33.333 0.00 0.00 0.00 3.51
4091 5137 7.973388 CCAACAGATTCAAGAAACAGTACAAAA 59.027 33.333 0.00 0.00 0.00 2.44
4138 5184 3.254166 AGTCTTGCAACCACAATGATGAC 59.746 43.478 0.00 0.00 0.00 3.06
4164 5219 4.501559 CCATGATTACGCTTTGCATGAAAG 59.498 41.667 0.00 5.14 43.63 2.62
4178 5233 6.404074 CCAGAAAAGAACTGAGCCATGATTAC 60.404 42.308 0.00 0.00 37.54 1.89
4403 5460 3.133362 TGGAGTTATATCTTTCGCGGGTT 59.867 43.478 6.13 0.00 0.00 4.11
4809 6091 3.128349 CCTACCCGGTGATAATTGTTCG 58.872 50.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.