Multiple sequence alignment - TraesCS3A01G404100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G404100 chr3A 100.000 3936 0 0 1 3936 649024757 649028692 0.000000e+00 7269.0
1 TraesCS3A01G404100 chr3A 95.588 136 6 0 223 358 469077563 469077428 6.620000e-53 219.0
2 TraesCS3A01G404100 chr3B 90.138 2981 177 53 681 3597 676615291 676618218 0.000000e+00 3768.0
3 TraesCS3A01G404100 chr3B 87.755 343 25 8 352 690 676614941 676615270 6.170000e-103 385.0
4 TraesCS3A01G404100 chr3B 93.506 231 12 3 1 228 676614712 676614942 1.350000e-89 340.0
5 TraesCS3A01G404100 chr3B 88.679 53 0 5 555 607 828525849 828525895 4.250000e-05 60.2
6 TraesCS3A01G404100 chr3D 85.761 1524 95 44 357 1820 514267276 514268737 0.000000e+00 1500.0
7 TraesCS3A01G404100 chr3D 91.332 946 54 11 2776 3693 514269675 514270620 0.000000e+00 1267.0
8 TraesCS3A01G404100 chr3D 92.571 848 52 8 1914 2760 514268757 514269594 0.000000e+00 1206.0
9 TraesCS3A01G404100 chr3D 98.049 205 4 0 1 205 514267049 514267253 1.340000e-94 357.0
10 TraesCS3A01G404100 chr3D 94.891 137 6 1 224 359 67064781 67064917 3.080000e-51 213.0
11 TraesCS3A01G404100 chr3D 85.507 69 7 3 3690 3757 19738380 19738314 7.060000e-08 69.4
12 TraesCS3A01G404100 chr3D 85.000 60 3 4 556 615 181108081 181108028 5.490000e-04 56.5
13 TraesCS3A01G404100 chr1B 97.761 134 3 0 225 358 518809546 518809679 8.510000e-57 231.0
14 TraesCS3A01G404100 chr1B 97.674 129 3 0 225 353 625574599 625574727 5.120000e-54 222.0
15 TraesCS3A01G404100 chr1B 96.947 131 4 0 226 356 577672058 577672188 1.840000e-53 220.0
16 TraesCS3A01G404100 chr1B 89.189 111 10 2 3701 3810 305435848 305435957 1.910000e-28 137.0
17 TraesCS3A01G404100 chr6A 99.213 127 1 0 227 353 99061399 99061525 3.060000e-56 230.0
18 TraesCS3A01G404100 chr6A 92.929 99 7 0 3700 3798 474450391 474450489 1.140000e-30 145.0
19 TraesCS3A01G404100 chr6A 81.034 116 8 11 3687 3800 104518786 104518683 3.260000e-11 80.5
20 TraesCS3A01G404100 chr7B 96.269 134 4 1 220 353 635493274 635493406 6.620000e-53 219.0
21 TraesCS3A01G404100 chr7B 94.891 137 6 1 224 359 678552459 678552323 3.080000e-51 213.0
22 TraesCS3A01G404100 chr5B 93.617 141 7 2 223 363 354738151 354738013 3.990000e-50 209.0
23 TraesCS3A01G404100 chr5B 93.000 100 7 0 3699 3798 674510090 674509991 3.170000e-31 147.0
24 TraesCS3A01G404100 chr5B 88.350 103 11 1 3799 3900 551407093 551407195 5.340000e-24 122.0
25 TraesCS3A01G404100 chr5B 88.462 52 0 5 556 607 461133879 461133834 1.530000e-04 58.4
26 TraesCS3A01G404100 chr5D 94.118 102 6 0 3700 3801 443776620 443776519 5.270000e-34 156.0
27 TraesCS3A01G404100 chr5D 88.793 116 13 0 3692 3807 442958207 442958322 4.100000e-30 143.0
28 TraesCS3A01G404100 chr2B 93.939 99 6 0 3699 3797 715928017 715928115 2.450000e-32 150.0
29 TraesCS3A01G404100 chr2A 93.878 98 6 0 3700 3797 676184646 676184549 8.810000e-32 148.0
30 TraesCS3A01G404100 chr2A 87.850 107 10 3 3794 3898 302053391 302053496 5.340000e-24 122.0
31 TraesCS3A01G404100 chr2A 88.000 100 11 1 3802 3900 391841474 391841375 2.480000e-22 117.0
32 TraesCS3A01G404100 chr2A 88.679 53 0 5 555 607 425828796 425828750 4.250000e-05 60.2
33 TraesCS3A01G404100 chr4A 91.429 105 9 0 3700 3804 278342013 278342117 1.140000e-30 145.0
34 TraesCS3A01G404100 chr6D 92.857 98 7 0 3700 3797 16198117 16198214 4.100000e-30 143.0
35 TraesCS3A01G404100 chr6D 91.176 102 6 3 3800 3898 10116560 10116661 6.860000e-28 135.0
36 TraesCS3A01G404100 chr6D 88.462 52 0 5 556 607 1548803 1548758 1.530000e-04 58.4
37 TraesCS3A01G404100 chr6D 88.462 52 0 4 556 607 84938506 84938461 1.530000e-04 58.4
38 TraesCS3A01G404100 chr1D 88.679 106 10 2 3800 3903 106959854 106959959 1.150000e-25 128.0
39 TraesCS3A01G404100 chr7A 88.776 98 10 1 3803 3899 611555763 611555860 6.910000e-23 119.0
40 TraesCS3A01G404100 chr7A 87.879 99 11 1 3803 3900 679380000 679379902 8.940000e-22 115.0
41 TraesCS3A01G404100 chr7A 88.679 53 0 5 555 607 594577341 594577295 4.250000e-05 60.2
42 TraesCS3A01G404100 chr7D 88.660 97 10 1 3803 3898 51550734 51550638 2.480000e-22 117.0
43 TraesCS3A01G404100 chr2D 84.746 118 16 2 3701 3817 542330600 542330484 2.480000e-22 117.0
44 TraesCS3A01G404100 chr2D 97.436 39 1 0 551 589 565157010 565157048 2.540000e-07 67.6
45 TraesCS3A01G404100 chr6B 87.255 102 10 3 3799 3898 114261359 114261259 3.210000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G404100 chr3A 649024757 649028692 3935 False 7269.000000 7269 100.000000 1 3936 1 chr3A.!!$F1 3935
1 TraesCS3A01G404100 chr3B 676614712 676618218 3506 False 1497.666667 3768 90.466333 1 3597 3 chr3B.!!$F2 3596
2 TraesCS3A01G404100 chr3D 514267049 514270620 3571 False 1082.500000 1500 91.928250 1 3693 4 chr3D.!!$F2 3692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 768 0.035881 TCTCAGCTGGGCAGTTTCTG 59.964 55.0 15.13 0.0 34.12 3.02 F
1256 1322 0.042188 CGTTTGGATATTCAGCGCCG 60.042 55.0 2.29 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2681 2798 0.039618 GCCCCCTCTGTGGATGAAAA 59.960 55.0 0.00 0.0 38.35 2.29 R
3012 3215 0.716108 GATGGAACGTCAGACAAGCG 59.284 55.0 0.41 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 199 7.144000 ACATGTTTCTCATTCTTTCTTTCTGC 58.856 34.615 0.00 0.00 34.09 4.26
205 207 1.589716 CTTTCTTTCTGCTGCCCCCG 61.590 60.000 0.00 0.00 0.00 5.73
206 208 3.567579 TTCTTTCTGCTGCCCCCGG 62.568 63.158 0.00 0.00 0.00 5.73
207 209 4.351054 CTTTCTGCTGCCCCCGGT 62.351 66.667 0.00 0.00 0.00 5.28
208 210 3.868200 CTTTCTGCTGCCCCCGGTT 62.868 63.158 0.00 0.00 0.00 4.44
228 232 3.938109 GGGGGCAGCTAGCTTATAC 57.062 57.895 16.46 6.10 44.79 1.47
229 233 1.353091 GGGGGCAGCTAGCTTATACT 58.647 55.000 16.46 0.00 44.79 2.12
230 234 1.276705 GGGGGCAGCTAGCTTATACTC 59.723 57.143 16.46 4.77 44.79 2.59
231 235 1.276705 GGGGCAGCTAGCTTATACTCC 59.723 57.143 16.46 10.69 44.79 3.85
232 236 1.276705 GGGCAGCTAGCTTATACTCCC 59.723 57.143 16.46 14.21 44.79 4.30
233 237 2.252714 GGCAGCTAGCTTATACTCCCT 58.747 52.381 16.46 0.00 44.79 4.20
234 238 2.232696 GGCAGCTAGCTTATACTCCCTC 59.767 54.545 16.46 0.00 44.79 4.30
235 239 2.232696 GCAGCTAGCTTATACTCCCTCC 59.767 54.545 16.46 0.00 41.15 4.30
236 240 2.490115 CAGCTAGCTTATACTCCCTCCG 59.510 54.545 16.46 0.00 0.00 4.63
237 241 2.108601 AGCTAGCTTATACTCCCTCCGT 59.891 50.000 12.68 0.00 0.00 4.69
238 242 2.488937 GCTAGCTTATACTCCCTCCGTC 59.511 54.545 7.70 0.00 0.00 4.79
239 243 3.811454 GCTAGCTTATACTCCCTCCGTCT 60.811 52.174 7.70 0.00 0.00 4.18
240 244 2.588620 AGCTTATACTCCCTCCGTCTG 58.411 52.381 0.00 0.00 0.00 3.51
241 245 2.175069 AGCTTATACTCCCTCCGTCTGA 59.825 50.000 0.00 0.00 0.00 3.27
242 246 2.957006 GCTTATACTCCCTCCGTCTGAA 59.043 50.000 0.00 0.00 0.00 3.02
243 247 3.383825 GCTTATACTCCCTCCGTCTGAAA 59.616 47.826 0.00 0.00 0.00 2.69
244 248 4.142004 GCTTATACTCCCTCCGTCTGAAAA 60.142 45.833 0.00 0.00 0.00 2.29
245 249 5.453480 GCTTATACTCCCTCCGTCTGAAAAT 60.453 44.000 0.00 0.00 0.00 1.82
246 250 6.239232 GCTTATACTCCCTCCGTCTGAAAATA 60.239 42.308 0.00 0.00 0.00 1.40
247 251 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
248 252 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
249 253 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
250 254 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
251 255 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
252 256 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
253 257 4.562757 CCCTCCGTCTGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
254 258 5.178797 CCTCCGTCTGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
255 259 5.292101 CCTCCGTCTGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
256 260 5.789521 TCCGTCTGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
257 261 6.227522 TCCGTCTGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
258 262 6.708502 TCCGTCTGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
259 263 7.227711 TCCGTCTGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
260 264 8.023128 CCGTCTGAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
261 265 8.843733 CGTCTGAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
262 266 9.897744 GTCTGAAAATACTTGTCATCAAAATGA 57.102 29.630 0.00 0.00 39.63 2.57
272 276 9.492973 ACTTGTCATCAAAATGAATAAAAAGGG 57.507 29.630 0.00 0.00 43.42 3.95
273 277 9.709495 CTTGTCATCAAAATGAATAAAAAGGGA 57.291 29.630 0.00 0.00 43.42 4.20
275 279 9.656040 TGTCATCAAAATGAATAAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
276 280 9.657419 GTCATCAAAATGAATAAAAAGGGATGT 57.343 29.630 0.00 0.00 43.42 3.06
335 339 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
336 340 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
337 341 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
338 342 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
339 343 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
340 344 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
341 345 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
342 346 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
343 347 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
344 348 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
345 349 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
346 350 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
347 351 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
348 352 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
349 353 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
350 354 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
369 373 3.372060 GAGTAGTTGTTGTTGGCAAAGC 58.628 45.455 0.00 0.00 36.22 3.51
390 394 2.736721 CTGTACACACCAATCAACCTCG 59.263 50.000 0.00 0.00 0.00 4.63
456 460 4.045636 ACAGGTTTCAACTTTCATGCAC 57.954 40.909 0.00 0.00 0.00 4.57
474 480 3.568007 TGCACTGTCTGTAAAAACATCCC 59.432 43.478 0.00 0.00 0.00 3.85
477 483 4.062991 ACTGTCTGTAAAAACATCCCGAC 58.937 43.478 0.00 0.00 0.00 4.79
495 501 2.000447 GACGTTTGTCCTGCAGTATCC 59.000 52.381 13.81 0.00 39.30 2.59
516 522 0.445436 CATCTGTTCAAGCCTGTCGC 59.555 55.000 0.00 0.00 37.98 5.19
517 523 1.016130 ATCTGTTCAAGCCTGTCGCG 61.016 55.000 0.00 0.00 44.76 5.87
518 524 1.956170 CTGTTCAAGCCTGTCGCGT 60.956 57.895 5.77 0.00 44.76 6.01
520 526 1.204312 GTTCAAGCCTGTCGCGTTC 59.796 57.895 5.77 1.06 44.76 3.95
521 527 1.069090 TTCAAGCCTGTCGCGTTCT 59.931 52.632 5.77 0.00 44.76 3.01
525 531 3.112709 GCCTGTCGCGTTCTGGAC 61.113 66.667 24.05 9.61 0.00 4.02
550 557 3.254166 TGTGATTTCTTCAGGAAAGCTGC 59.746 43.478 0.00 0.00 46.71 5.25
552 559 4.082354 GTGATTTCTTCAGGAAAGCTGCAT 60.082 41.667 1.02 0.00 46.71 3.96
607 614 8.665906 AGAATTATAATTATGGAACGGAGGGAA 58.334 33.333 10.68 0.00 0.00 3.97
615 622 1.607148 GGAACGGAGGGAACACTTTTG 59.393 52.381 0.00 0.00 0.00 2.44
629 636 7.414540 GGGAACACTTTTGATGATCACTATCAC 60.415 40.741 0.00 0.00 44.79 3.06
635 642 9.404848 ACTTTTGATGATCACTATCACATGAAT 57.595 29.630 0.00 0.00 44.79 2.57
672 679 2.479566 TCTTCAGGTCAATGGTGCTC 57.520 50.000 0.00 0.00 0.00 4.26
675 711 2.189594 TCAGGTCAATGGTGCTCAAG 57.810 50.000 0.00 0.00 0.00 3.02
677 713 2.106338 TCAGGTCAATGGTGCTCAAGAA 59.894 45.455 0.00 0.00 0.00 2.52
679 715 2.887152 AGGTCAATGGTGCTCAAGAAAC 59.113 45.455 0.00 0.00 0.00 2.78
714 752 3.366052 AGAGGGTCTGAAGTCTCTCTC 57.634 52.381 1.63 0.00 31.67 3.20
729 767 0.324285 CTCTCAGCTGGGCAGTTTCT 59.676 55.000 15.13 0.00 0.00 2.52
730 768 0.035881 TCTCAGCTGGGCAGTTTCTG 59.964 55.000 15.13 0.00 34.12 3.02
754 792 1.128692 GAAAGAAAGGTGGATGTCGCG 59.871 52.381 0.00 0.00 0.00 5.87
899 937 4.289101 TCTCGTCACCGTCCCCCA 62.289 66.667 0.00 0.00 35.01 4.96
904 942 4.242586 TCACCGTCCCCCACTCCA 62.243 66.667 0.00 0.00 0.00 3.86
909 947 2.531942 GTCCCCCACTCCACCCTT 60.532 66.667 0.00 0.00 0.00 3.95
911 949 2.204151 CCCCCACTCCACCCTTCT 60.204 66.667 0.00 0.00 0.00 2.85
914 952 2.301738 CCCACTCCACCCTTCTCCC 61.302 68.421 0.00 0.00 0.00 4.30
915 953 2.301738 CCACTCCACCCTTCTCCCC 61.302 68.421 0.00 0.00 0.00 4.81
916 954 1.538876 CACTCCACCCTTCTCCCCA 60.539 63.158 0.00 0.00 0.00 4.96
938 977 1.016627 CCAGTCGCTGAGAGAGAGAG 58.983 60.000 8.20 0.00 32.44 3.20
943 982 1.138859 TCGCTGAGAGAGAGAGGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
1159 1198 1.002315 GTACGTGCCTCCCCACTTTTA 59.998 52.381 0.00 0.00 33.60 1.52
1160 1199 0.250597 ACGTGCCTCCCCACTTTTAC 60.251 55.000 0.00 0.00 33.60 2.01
1177 1240 2.547640 TACCTCTCCGTCGACCTGGG 62.548 65.000 10.58 5.76 0.00 4.45
1220 1284 3.650298 ATGCTTGCCTGCCACCGAT 62.650 57.895 0.00 0.00 0.00 4.18
1231 1295 3.861797 CACCGATTAGGCCGCCCT 61.862 66.667 5.55 0.00 46.52 5.19
1237 1301 0.738975 GATTAGGCCGCCCTTGTTTC 59.261 55.000 5.55 0.00 42.87 2.78
1252 1318 5.095490 CCTTGTTTCGTTTGGATATTCAGC 58.905 41.667 0.00 0.00 0.00 4.26
1256 1322 0.042188 CGTTTGGATATTCAGCGCCG 60.042 55.000 2.29 0.00 0.00 6.46
1259 1325 0.464036 TTGGATATTCAGCGCCGTCT 59.536 50.000 2.29 0.00 0.00 4.18
1264 1330 0.457853 TATTCAGCGCCGTCTGTCAC 60.458 55.000 2.29 0.00 35.63 3.67
1284 1350 2.895372 GCGAATAGTGTGCGGGGG 60.895 66.667 0.00 0.00 0.00 5.40
1370 1436 4.758165 ACCATTACTTGTTTGAACCCTACG 59.242 41.667 0.00 0.00 0.00 3.51
1391 1457 3.546670 CGAACGTATCCTGCACTTCTAAC 59.453 47.826 0.00 0.00 0.00 2.34
1476 1542 7.115947 GGTGCGATAATTTAGGTCTGTATGTAC 59.884 40.741 0.00 0.00 0.00 2.90
1507 1585 3.202151 GGGTTCTGGATGTGGAATTCCTA 59.798 47.826 24.73 14.33 36.82 2.94
1524 1602 8.689972 GGAATTCCTATCAAAATCTGTGTTCAT 58.310 33.333 17.73 0.00 0.00 2.57
1538 1616 4.452825 TGTGTTCATCCCACTTCGTAAAA 58.547 39.130 0.00 0.00 33.92 1.52
1595 1681 4.445019 GCTTACTAGCAATCTAGCCCCTTT 60.445 45.833 0.00 0.00 46.95 3.11
1598 1684 0.181350 AGCAATCTAGCCCCTTTCCG 59.819 55.000 0.00 0.00 34.23 4.30
1670 1780 3.337398 TTTTTGGACAAGCACGCAC 57.663 47.368 0.00 0.00 0.00 5.34
1682 1793 1.014352 GCACGCACTACCTTTATGGG 58.986 55.000 0.00 0.00 41.11 4.00
1731 1846 4.900635 ATTCTAAATGTTAGGCTTGCGG 57.099 40.909 0.00 0.00 0.00 5.69
1751 1866 0.954452 ACGAAAAGGCTTCCTGCAAG 59.046 50.000 0.00 0.00 45.15 4.01
1757 1872 5.106317 CGAAAAGGCTTCCTGCAAGTATTTA 60.106 40.000 0.00 0.00 45.15 1.40
1813 1928 6.435277 TGAAGAGGAAATTGCAGCTAAGATTT 59.565 34.615 0.00 0.00 0.00 2.17
1845 1960 7.685849 ATGTAGTTGGTATAATGTACCTGGT 57.314 36.000 4.05 4.05 38.39 4.00
1846 1961 6.880484 TGTAGTTGGTATAATGTACCTGGTG 58.120 40.000 10.23 0.00 38.39 4.17
1847 1962 6.668718 TGTAGTTGGTATAATGTACCTGGTGA 59.331 38.462 10.23 0.00 38.39 4.02
1848 1963 5.985911 AGTTGGTATAATGTACCTGGTGAC 58.014 41.667 10.23 4.66 38.39 3.67
1849 1964 5.486063 AGTTGGTATAATGTACCTGGTGACA 59.514 40.000 10.23 10.23 38.39 3.58
1877 1992 4.757149 GCCTATAGGTAGCAAATCAACCAG 59.243 45.833 20.10 0.00 35.64 4.00
1938 2053 2.229302 AGCTCAGTAGACCACTCGAAAC 59.771 50.000 0.00 0.00 34.26 2.78
1941 2056 0.886563 AGTAGACCACTCGAAACGGG 59.113 55.000 0.00 0.00 28.33 5.28
1942 2057 0.600057 GTAGACCACTCGAAACGGGT 59.400 55.000 0.00 0.00 43.31 5.28
1943 2058 1.000171 GTAGACCACTCGAAACGGGTT 60.000 52.381 0.00 0.00 37.20 4.11
1944 2059 0.466963 AGACCACTCGAAACGGGTTT 59.533 50.000 0.00 0.00 37.20 3.27
1945 2060 0.863799 GACCACTCGAAACGGGTTTC 59.136 55.000 13.02 13.02 37.20 2.78
1946 2061 0.533531 ACCACTCGAAACGGGTTTCC 60.534 55.000 16.29 2.35 37.20 3.13
2071 2188 7.303182 AGTAAGGCTGTTAGATATGCACATA 57.697 36.000 0.00 0.00 0.00 2.29
2081 2198 7.601508 TGTTAGATATGCACATAGATGCTTGAG 59.398 37.037 0.00 0.00 46.28 3.02
2138 2255 6.252967 TGCATCGATCAAAGTACATTTTGT 57.747 33.333 0.00 0.00 38.77 2.83
2315 2432 8.411991 ACCTTTGGGAAGAACGAATTATTTAA 57.588 30.769 0.00 0.00 34.71 1.52
2397 2514 9.638239 TTGTTTAACATCAAATTATCTTGCCTC 57.362 29.630 0.00 0.00 0.00 4.70
2457 2574 1.574526 TTGGAGCTGGATTCCCTGGG 61.575 60.000 6.33 6.33 33.62 4.45
2478 2595 0.687757 TACAGCTGGGATTCGGAGCT 60.688 55.000 19.93 0.00 43.99 4.09
2517 2634 2.152016 GGAATAGGTTTCGGCTATGGC 58.848 52.381 0.00 0.00 37.82 4.40
2547 2664 4.978099 AGGGAATTGCATATGACGAGAAT 58.022 39.130 6.97 0.00 0.00 2.40
2595 2712 0.687354 TTCAGAACACCAGGAGCCTC 59.313 55.000 0.00 0.00 0.00 4.70
2616 2733 5.453480 CCTCCCTTATGAGTAAGCAGTAACC 60.453 48.000 0.00 0.00 36.74 2.85
2637 2754 6.429521 ACCCACTCTAAGCTTTTGTACTAA 57.570 37.500 3.20 0.00 0.00 2.24
2681 2798 1.217511 CTCCTGCTGCTCGACATGT 59.782 57.895 0.00 0.00 0.00 3.21
2684 2801 0.877071 CCTGCTGCTCGACATGTTTT 59.123 50.000 0.00 0.00 0.00 2.43
2727 2844 6.484643 TGCTTGACCTTGAATCTGCTTATATC 59.515 38.462 0.00 0.00 0.00 1.63
2851 3043 0.250467 TCTGCAGCCAGGAGTTTGAC 60.250 55.000 9.47 0.00 39.61 3.18
2886 3078 0.177604 GTGATGGAGAGCACCAGGAG 59.822 60.000 0.00 0.00 43.49 3.69
2938 3130 0.684479 AGTGGAGGCGCATGTAGAGA 60.684 55.000 10.83 0.00 0.00 3.10
3012 3215 1.079057 GAGCCTGAAACGACCTCCC 60.079 63.158 0.00 0.00 0.00 4.30
3041 3244 6.535150 TGTCTGACGTTCCATCTGAATAATTC 59.465 38.462 2.98 0.00 34.90 2.17
3276 3487 5.479306 TCGAATCAAATCTTTCTCCGTCTT 58.521 37.500 0.00 0.00 0.00 3.01
3312 3523 9.444600 GGTGTCTGTATTTAAGTTCCTGATTAA 57.555 33.333 0.00 0.00 0.00 1.40
3338 3549 2.179517 GTCACCTCGCTGGAGTCG 59.820 66.667 1.32 0.00 38.70 4.18
3356 3567 2.346847 GTCGCTGCTGTTCATACTTCTG 59.653 50.000 0.00 0.00 0.00 3.02
3397 3608 1.021390 AAGATTTGCGCTCCTCCACG 61.021 55.000 9.73 0.00 0.00 4.94
3410 3621 1.202417 CCTCCACGGCAGTAGTACATG 60.202 57.143 2.52 0.00 0.00 3.21
3466 3686 5.908240 ACGCGATTAATGATTTCGTTTTG 57.092 34.783 15.93 0.00 35.40 2.44
3479 3699 0.165944 CGTTTTGATCGGTGTCAGCC 59.834 55.000 0.00 0.00 0.00 4.85
3488 3708 2.048127 GTGTCAGCCGTCTCCCAC 60.048 66.667 0.00 0.00 0.00 4.61
3506 3726 0.482446 ACACCATTGGAGGGCAAGAA 59.518 50.000 10.37 0.00 0.00 2.52
3523 3743 1.074566 AGAAAGGGAAGTCTTGCAGGG 59.925 52.381 6.42 0.00 0.00 4.45
3531 3751 1.270907 AGTCTTGCAGGGGAGTGTAG 58.729 55.000 0.00 0.00 0.00 2.74
3599 3819 1.145377 AACGGTCAGCGTTTCCAGT 59.855 52.632 9.27 0.00 0.00 4.00
3603 3823 1.166531 GGTCAGCGTTTCCAGTTGCT 61.167 55.000 0.00 0.00 38.43 3.91
3623 3843 3.457625 CTCCAGCCGCATCTCCAGG 62.458 68.421 0.00 0.00 0.00 4.45
3656 3876 1.679305 GTCTCCAGGACCAGAGCGA 60.679 63.158 6.67 0.00 38.93 4.93
3673 3893 3.779759 AGCGAACAAGATCATCAGAGAC 58.220 45.455 0.00 0.00 0.00 3.36
3675 3895 3.796178 GCGAACAAGATCATCAGAGACTC 59.204 47.826 0.00 0.00 0.00 3.36
3687 3907 6.634805 TCATCAGAGACTCTATCACCAAAAC 58.365 40.000 4.22 0.00 0.00 2.43
3688 3908 6.211384 TCATCAGAGACTCTATCACCAAAACA 59.789 38.462 4.22 0.00 0.00 2.83
3689 3909 5.784177 TCAGAGACTCTATCACCAAAACAC 58.216 41.667 4.22 0.00 0.00 3.32
3690 3910 4.623167 CAGAGACTCTATCACCAAAACACG 59.377 45.833 4.22 0.00 0.00 4.49
3691 3911 3.326747 AGACTCTATCACCAAAACACGC 58.673 45.455 0.00 0.00 0.00 5.34
3692 3912 3.006967 AGACTCTATCACCAAAACACGCT 59.993 43.478 0.00 0.00 0.00 5.07
3693 3913 3.740115 ACTCTATCACCAAAACACGCTT 58.260 40.909 0.00 0.00 0.00 4.68
3694 3914 3.746492 ACTCTATCACCAAAACACGCTTC 59.254 43.478 0.00 0.00 0.00 3.86
3695 3915 2.734606 TCTATCACCAAAACACGCTTCG 59.265 45.455 0.00 0.00 0.00 3.79
3696 3916 0.040425 ATCACCAAAACACGCTTCGC 60.040 50.000 0.00 0.00 0.00 4.70
3697 3917 1.092921 TCACCAAAACACGCTTCGCT 61.093 50.000 0.00 0.00 0.00 4.93
3698 3918 0.657368 CACCAAAACACGCTTCGCTC 60.657 55.000 0.00 0.00 0.00 5.03
3699 3919 1.092921 ACCAAAACACGCTTCGCTCA 61.093 50.000 0.00 0.00 0.00 4.26
3700 3920 0.238289 CCAAAACACGCTTCGCTCAT 59.762 50.000 0.00 0.00 0.00 2.90
3701 3921 1.463056 CCAAAACACGCTTCGCTCATA 59.537 47.619 0.00 0.00 0.00 2.15
3702 3922 2.495939 CAAAACACGCTTCGCTCATAC 58.504 47.619 0.00 0.00 0.00 2.39
3703 3923 2.080286 AAACACGCTTCGCTCATACT 57.920 45.000 0.00 0.00 0.00 2.12
3704 3924 1.630148 AACACGCTTCGCTCATACTC 58.370 50.000 0.00 0.00 0.00 2.59
3705 3925 0.179134 ACACGCTTCGCTCATACTCC 60.179 55.000 0.00 0.00 0.00 3.85
3706 3926 0.872021 CACGCTTCGCTCATACTCCC 60.872 60.000 0.00 0.00 0.00 4.30
3707 3927 1.038130 ACGCTTCGCTCATACTCCCT 61.038 55.000 0.00 0.00 0.00 4.20
3708 3928 0.318275 CGCTTCGCTCATACTCCCTC 60.318 60.000 0.00 0.00 0.00 4.30
3709 3929 1.036707 GCTTCGCTCATACTCCCTCT 58.963 55.000 0.00 0.00 0.00 3.69
3710 3930 2.231529 GCTTCGCTCATACTCCCTCTA 58.768 52.381 0.00 0.00 0.00 2.43
3711 3931 2.823154 GCTTCGCTCATACTCCCTCTAT 59.177 50.000 0.00 0.00 0.00 1.98
3712 3932 3.257127 GCTTCGCTCATACTCCCTCTATT 59.743 47.826 0.00 0.00 0.00 1.73
3713 3933 4.262249 GCTTCGCTCATACTCCCTCTATTT 60.262 45.833 0.00 0.00 0.00 1.40
3714 3934 5.455056 TTCGCTCATACTCCCTCTATTTC 57.545 43.478 0.00 0.00 0.00 2.17
3715 3935 4.470602 TCGCTCATACTCCCTCTATTTCA 58.529 43.478 0.00 0.00 0.00 2.69
3716 3936 4.893524 TCGCTCATACTCCCTCTATTTCAA 59.106 41.667 0.00 0.00 0.00 2.69
3717 3937 5.362717 TCGCTCATACTCCCTCTATTTCAAA 59.637 40.000 0.00 0.00 0.00 2.69
3718 3938 6.049149 CGCTCATACTCCCTCTATTTCAAAA 58.951 40.000 0.00 0.00 0.00 2.44
3719 3939 6.708054 CGCTCATACTCCCTCTATTTCAAAAT 59.292 38.462 0.00 0.00 0.00 1.82
3720 3940 7.872993 CGCTCATACTCCCTCTATTTCAAAATA 59.127 37.037 0.00 0.00 0.00 1.40
3721 3941 9.213799 GCTCATACTCCCTCTATTTCAAAATAG 57.786 37.037 13.87 13.87 45.83 1.73
3787 4007 9.329913 CAAAGTTGAGTTATCTATTTTGGAACG 57.670 33.333 0.00 0.00 35.65 3.95
3788 4008 7.611213 AGTTGAGTTATCTATTTTGGAACGG 57.389 36.000 0.00 0.00 0.00 4.44
3789 4009 7.391620 AGTTGAGTTATCTATTTTGGAACGGA 58.608 34.615 0.00 0.00 0.00 4.69
3790 4010 7.549488 AGTTGAGTTATCTATTTTGGAACGGAG 59.451 37.037 0.00 0.00 0.00 4.63
3791 4011 6.346096 TGAGTTATCTATTTTGGAACGGAGG 58.654 40.000 0.00 0.00 0.00 4.30
3792 4012 5.681639 AGTTATCTATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3793 4013 5.427481 AGTTATCTATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3794 4014 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3795 4015 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3796 4016 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3797 4017 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3798 4018 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
3799 4019 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
3800 4020 2.905415 TGGAACGGAGGGAGTACTTA 57.095 50.000 0.00 0.00 0.00 2.24
3801 4021 2.450476 TGGAACGGAGGGAGTACTTAC 58.550 52.381 0.00 0.00 0.00 2.34
3802 4022 2.042162 TGGAACGGAGGGAGTACTTACT 59.958 50.000 0.00 0.00 39.71 2.24
3803 4023 3.266772 TGGAACGGAGGGAGTACTTACTA 59.733 47.826 0.00 0.00 36.50 1.82
3804 4024 3.629855 GGAACGGAGGGAGTACTTACTAC 59.370 52.174 0.00 0.00 36.50 2.73
3805 4025 4.522114 GAACGGAGGGAGTACTTACTACT 58.478 47.826 0.00 0.00 37.32 2.57
3815 4035 6.682423 GAGTACTTACTACTCCCTCTGTTC 57.318 45.833 0.00 0.00 44.14 3.18
3816 4036 6.391479 AGTACTTACTACTCCCTCTGTTCT 57.609 41.667 0.00 0.00 34.13 3.01
3817 4037 7.507797 AGTACTTACTACTCCCTCTGTTCTA 57.492 40.000 0.00 0.00 34.13 2.10
3818 4038 7.926705 AGTACTTACTACTCCCTCTGTTCTAA 58.073 38.462 0.00 0.00 34.13 2.10
3819 4039 8.389366 AGTACTTACTACTCCCTCTGTTCTAAA 58.611 37.037 0.00 0.00 34.13 1.85
3820 4040 9.018582 GTACTTACTACTCCCTCTGTTCTAAAA 57.981 37.037 0.00 0.00 0.00 1.52
3821 4041 8.667592 ACTTACTACTCCCTCTGTTCTAAAAT 57.332 34.615 0.00 0.00 0.00 1.82
3822 4042 9.765295 ACTTACTACTCCCTCTGTTCTAAAATA 57.235 33.333 0.00 0.00 0.00 1.40
3826 4046 9.892130 ACTACTCCCTCTGTTCTAAAATAAATG 57.108 33.333 0.00 0.00 0.00 2.32
3827 4047 9.892130 CTACTCCCTCTGTTCTAAAATAAATGT 57.108 33.333 0.00 0.00 0.00 2.71
3828 4048 8.794335 ACTCCCTCTGTTCTAAAATAAATGTC 57.206 34.615 0.00 0.00 0.00 3.06
3829 4049 8.606830 ACTCCCTCTGTTCTAAAATAAATGTCT 58.393 33.333 0.00 0.00 0.00 3.41
3830 4050 9.103861 CTCCCTCTGTTCTAAAATAAATGTCTC 57.896 37.037 0.00 0.00 0.00 3.36
3831 4051 8.602424 TCCCTCTGTTCTAAAATAAATGTCTCA 58.398 33.333 0.00 0.00 0.00 3.27
3832 4052 9.231297 CCCTCTGTTCTAAAATAAATGTCTCAA 57.769 33.333 0.00 0.00 0.00 3.02
3889 4109 7.736447 AACTTGAGACACTTATTTTGAGAGG 57.264 36.000 0.00 0.00 0.00 3.69
3890 4110 7.067496 ACTTGAGACACTTATTTTGAGAGGA 57.933 36.000 0.00 0.00 0.00 3.71
3891 4111 7.158021 ACTTGAGACACTTATTTTGAGAGGAG 58.842 38.462 0.00 0.00 0.00 3.69
3892 4112 6.042638 TGAGACACTTATTTTGAGAGGAGG 57.957 41.667 0.00 0.00 0.00 4.30
3893 4113 5.046304 TGAGACACTTATTTTGAGAGGAGGG 60.046 44.000 0.00 0.00 0.00 4.30
3894 4114 5.094387 AGACACTTATTTTGAGAGGAGGGA 58.906 41.667 0.00 0.00 0.00 4.20
3895 4115 5.188751 AGACACTTATTTTGAGAGGAGGGAG 59.811 44.000 0.00 0.00 0.00 4.30
3896 4116 4.846940 ACACTTATTTTGAGAGGAGGGAGT 59.153 41.667 0.00 0.00 0.00 3.85
3897 4117 6.023603 ACACTTATTTTGAGAGGAGGGAGTA 58.976 40.000 0.00 0.00 0.00 2.59
3898 4118 6.070710 ACACTTATTTTGAGAGGAGGGAGTAC 60.071 42.308 0.00 0.00 0.00 2.73
3899 4119 6.023603 ACTTATTTTGAGAGGAGGGAGTACA 58.976 40.000 0.00 0.00 0.00 2.90
3900 4120 6.500751 ACTTATTTTGAGAGGAGGGAGTACAA 59.499 38.462 0.00 0.00 0.00 2.41
3901 4121 4.618920 TTTTGAGAGGAGGGAGTACAAC 57.381 45.455 0.00 0.00 0.00 3.32
3902 4122 3.544698 TTGAGAGGAGGGAGTACAACT 57.455 47.619 0.00 0.00 0.00 3.16
3903 4123 3.544698 TGAGAGGAGGGAGTACAACTT 57.455 47.619 0.00 0.00 0.00 2.66
3904 4124 3.432378 TGAGAGGAGGGAGTACAACTTC 58.568 50.000 0.00 0.00 0.00 3.01
3905 4125 2.424246 GAGAGGAGGGAGTACAACTTCG 59.576 54.545 0.00 0.00 0.00 3.79
3906 4126 2.169330 GAGGAGGGAGTACAACTTCGT 58.831 52.381 0.00 0.00 0.00 3.85
3907 4127 3.009916 AGAGGAGGGAGTACAACTTCGTA 59.990 47.826 0.00 0.00 0.00 3.43
3908 4128 3.087781 AGGAGGGAGTACAACTTCGTAC 58.912 50.000 0.00 0.00 41.75 3.67
3922 4142 8.876275 ACAACTTCGTACTAAAATAAGTGACA 57.124 30.769 0.00 0.00 31.09 3.58
3923 4143 8.758715 ACAACTTCGTACTAAAATAAGTGACAC 58.241 33.333 0.00 0.00 31.09 3.67
3924 4144 8.975439 CAACTTCGTACTAAAATAAGTGACACT 58.025 33.333 1.07 1.07 31.09 3.55
3925 4145 9.538508 AACTTCGTACTAAAATAAGTGACACTT 57.461 29.630 23.61 23.61 41.97 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.401738 ATTGACTGGGTGTGAGTGGG 59.598 55.000 0.00 0.00 0.00 4.61
211 215 1.276705 GGAGTATAAGCTAGCTGCCCC 59.723 57.143 20.16 10.20 44.23 5.80
226 230 4.607239 AGTATTTTCAGACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
227 231 3.442076 AGTATTTTCAGACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
228 232 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
229 233 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
230 234 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
231 235 4.566004 TGACAAGTATTTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
232 236 5.869344 TGATGACAAGTATTTTCAGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
233 237 5.789521 TGATGACAAGTATTTTCAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
234 238 6.480524 TTGATGACAAGTATTTTCAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
235 239 8.843733 CATTTTGATGACAAGTATTTTCAGACG 58.156 33.333 0.00 0.00 37.32 4.18
236 240 9.897744 TCATTTTGATGACAAGTATTTTCAGAC 57.102 29.630 0.00 0.00 37.32 3.51
246 250 9.492973 CCCTTTTTATTCATTTTGATGACAAGT 57.507 29.630 0.00 0.00 37.32 3.16
247 251 9.709495 TCCCTTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
249 253 9.656040 CATCCCTTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
250 254 9.657419 ACATCCCTTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 32.39 3.06
309 313 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
310 314 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
311 315 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
312 316 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
313 317 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
314 318 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
315 319 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
316 320 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
317 321 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
318 322 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
319 323 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
320 324 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
321 325 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
322 326 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
323 327 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
324 328 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
325 329 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
326 330 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
327 331 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
328 332 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
329 333 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
330 334 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
331 335 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
332 336 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
333 337 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
334 338 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
335 339 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
336 340 0.038744 AACTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
337 341 0.679002 CAACTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
338 342 0.964358 ACAACTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
339 343 1.067071 CAACAACTACTCCCTCCGTCC 60.067 57.143 0.00 0.00 0.00 4.79
340 344 1.617357 ACAACAACTACTCCCTCCGTC 59.383 52.381 0.00 0.00 0.00 4.79
341 345 1.713297 ACAACAACTACTCCCTCCGT 58.287 50.000 0.00 0.00 0.00 4.69
342 346 2.413837 CAACAACAACTACTCCCTCCG 58.586 52.381 0.00 0.00 0.00 4.63
343 347 2.779506 CCAACAACAACTACTCCCTCC 58.220 52.381 0.00 0.00 0.00 4.30
344 348 2.152016 GCCAACAACAACTACTCCCTC 58.848 52.381 0.00 0.00 0.00 4.30
345 349 1.493022 TGCCAACAACAACTACTCCCT 59.507 47.619 0.00 0.00 0.00 4.20
346 350 1.975660 TGCCAACAACAACTACTCCC 58.024 50.000 0.00 0.00 0.00 4.30
347 351 3.795488 GCTTTGCCAACAACAACTACTCC 60.795 47.826 0.00 0.00 34.87 3.85
348 352 3.066760 AGCTTTGCCAACAACAACTACTC 59.933 43.478 0.00 0.00 34.87 2.59
349 353 3.023832 AGCTTTGCCAACAACAACTACT 58.976 40.909 0.00 0.00 34.87 2.57
350 354 3.115554 CAGCTTTGCCAACAACAACTAC 58.884 45.455 0.00 0.00 34.87 2.73
369 373 2.736721 CGAGGTTGATTGGTGTGTACAG 59.263 50.000 0.00 0.00 0.00 2.74
390 394 4.318831 GCGCCTGCTTATTATAACTGTGAC 60.319 45.833 0.00 0.00 38.39 3.67
452 456 3.568007 GGGATGTTTTTACAGACAGTGCA 59.432 43.478 0.00 0.00 0.00 4.57
456 460 3.122948 CGTCGGGATGTTTTTACAGACAG 59.877 47.826 0.00 0.00 0.00 3.51
474 480 1.654105 GATACTGCAGGACAAACGTCG 59.346 52.381 19.93 0.00 33.96 5.12
477 483 1.732259 GTGGATACTGCAGGACAAACG 59.268 52.381 19.93 0.00 37.61 3.60
495 501 1.462283 CGACAGGCTTGAACAGATGTG 59.538 52.381 1.40 0.00 0.00 3.21
517 523 2.417719 AGAAATCACAGCGTCCAGAAC 58.582 47.619 0.00 0.00 0.00 3.01
518 524 2.839486 AGAAATCACAGCGTCCAGAA 57.161 45.000 0.00 0.00 0.00 3.02
520 526 2.414481 CTGAAGAAATCACAGCGTCCAG 59.586 50.000 0.00 0.00 33.47 3.86
521 527 2.416747 CTGAAGAAATCACAGCGTCCA 58.583 47.619 0.00 0.00 33.47 4.02
525 531 3.669023 GCTTTCCTGAAGAAATCACAGCG 60.669 47.826 0.00 0.00 43.50 5.18
576 583 8.984764 TCCGTTCCATAATTATAATTCTTGTCG 58.015 33.333 13.95 14.36 0.00 4.35
607 614 7.825761 TCATGTGATAGTGATCATCAAAAGTGT 59.174 33.333 0.00 0.00 43.95 3.55
635 642 7.835682 ACCTGAAGATTCATGATTCCATAAACA 59.164 33.333 12.82 5.42 36.46 2.83
672 679 1.740585 TGTGGTGTGAACCGTTTCTTG 59.259 47.619 0.00 0.00 32.36 3.02
675 711 1.063469 CTGTGTGGTGTGAACCGTTTC 59.937 52.381 0.00 0.00 0.00 2.78
677 713 0.250793 TCTGTGTGGTGTGAACCGTT 59.749 50.000 0.00 0.00 0.00 4.44
679 715 0.880278 CCTCTGTGTGGTGTGAACCG 60.880 60.000 0.00 0.00 0.00 4.44
711 749 0.035881 CAGAAACTGCCCAGCTGAGA 59.964 55.000 17.39 0.00 0.00 3.27
712 750 0.035881 TCAGAAACTGCCCAGCTGAG 59.964 55.000 17.39 1.83 32.36 3.35
713 751 0.035881 CTCAGAAACTGCCCAGCTGA 59.964 55.000 17.39 0.00 34.71 4.26
714 752 0.035881 TCTCAGAAACTGCCCAGCTG 59.964 55.000 6.78 6.78 0.00 4.24
729 767 4.561530 CGACATCCACCTTTCTTTCTCTCA 60.562 45.833 0.00 0.00 0.00 3.27
730 768 3.929610 CGACATCCACCTTTCTTTCTCTC 59.070 47.826 0.00 0.00 0.00 3.20
761 799 4.148825 CGTTAGGAGGCCGCTGCT 62.149 66.667 6.40 0.00 37.74 4.24
899 937 1.539124 GTGGGGAGAAGGGTGGAGT 60.539 63.158 0.00 0.00 0.00 3.85
904 942 3.882670 TGGGGTGGGGAGAAGGGT 61.883 66.667 0.00 0.00 0.00 4.34
908 946 2.606519 CGACTGGGGTGGGGAGAA 60.607 66.667 0.00 0.00 0.00 2.87
914 952 2.997315 TCTCAGCGACTGGGGTGG 60.997 66.667 6.85 0.00 36.14 4.61
915 953 1.943116 CTCTCTCAGCGACTGGGGTG 61.943 65.000 6.85 2.03 31.91 4.61
916 954 1.680651 CTCTCTCAGCGACTGGGGT 60.681 63.158 6.85 0.00 31.91 4.95
938 977 1.457009 CGGGAGGGTTCGATCTCTCC 61.457 65.000 27.79 27.79 43.65 3.71
943 982 1.143401 GGTTCGGGAGGGTTCGATC 59.857 63.158 0.00 0.00 35.25 3.69
1154 1193 1.817447 AGGTCGACGGAGAGGTAAAAG 59.183 52.381 9.92 0.00 0.00 2.27
1159 1198 2.361357 CCAGGTCGACGGAGAGGT 60.361 66.667 9.92 0.00 0.00 3.85
1160 1199 3.141488 CCCAGGTCGACGGAGAGG 61.141 72.222 9.92 6.45 0.00 3.69
1177 1240 1.003545 CATGTCCATCGCCGATTCAAC 60.004 52.381 0.00 0.00 0.00 3.18
1220 1284 1.673009 CGAAACAAGGGCGGCCTAA 60.673 57.895 33.03 0.00 0.00 2.69
1226 1290 0.596082 ATCCAAACGAAACAAGGGCG 59.404 50.000 0.00 0.00 0.00 6.13
1231 1295 4.717991 CGCTGAATATCCAAACGAAACAA 58.282 39.130 0.00 0.00 0.00 2.83
1237 1301 0.042188 CGGCGCTGAATATCCAAACG 60.042 55.000 11.90 0.00 0.00 3.60
1256 1322 2.263077 CACTATTCGCCAGTGACAGAC 58.737 52.381 5.29 0.00 45.10 3.51
1259 1325 1.939381 GCACACTATTCGCCAGTGACA 60.939 52.381 15.04 0.00 45.10 3.58
1264 1330 2.173669 CCCGCACACTATTCGCCAG 61.174 63.158 0.00 0.00 0.00 4.85
1370 1436 3.864003 GGTTAGAAGTGCAGGATACGTTC 59.136 47.826 0.00 0.00 46.39 3.95
1391 1457 1.229975 TGCTGACAACATGCGACTGG 61.230 55.000 0.00 0.00 0.00 4.00
1476 1542 3.565482 CACATCCAGAACCCAATATTCCG 59.435 47.826 0.00 0.00 0.00 4.30
1507 1585 5.327732 AGTGGGATGAACACAGATTTTGAT 58.672 37.500 0.00 0.00 41.21 2.57
1538 1616 1.816224 ACGGTTGCACTTTCACTGTTT 59.184 42.857 0.00 0.00 0.00 2.83
1595 1681 3.291383 CCTTTTGTTGCGGCCGGA 61.291 61.111 29.38 24.35 0.00 5.14
1670 1780 8.164070 ACTATTTAGGCATTCCCATAAAGGTAG 58.836 37.037 0.00 0.00 35.39 3.18
1682 1793 5.940470 CCACTCCCATACTATTTAGGCATTC 59.060 44.000 0.00 0.00 0.00 2.67
1731 1846 0.951558 TTGCAGGAAGCCTTTTCGTC 59.048 50.000 0.00 0.00 44.83 4.20
1781 1896 5.356470 GCTGCAATTTCCTCTTCAGATAAGT 59.644 40.000 0.00 0.00 0.00 2.24
1836 1951 1.257743 GCTCTCTGTCACCAGGTACA 58.742 55.000 0.00 0.00 39.31 2.90
1837 1952 0.533032 GGCTCTCTGTCACCAGGTAC 59.467 60.000 0.00 0.00 39.31 3.34
1838 1953 0.409876 AGGCTCTCTGTCACCAGGTA 59.590 55.000 0.00 0.00 39.31 3.08
1839 1954 0.409876 TAGGCTCTCTGTCACCAGGT 59.590 55.000 0.00 0.00 39.31 4.00
1840 1955 1.786937 ATAGGCTCTCTGTCACCAGG 58.213 55.000 0.00 0.00 39.31 4.45
1841 1956 2.890311 CCTATAGGCTCTCTGTCACCAG 59.110 54.545 5.67 0.00 40.25 4.00
1842 1957 2.245028 ACCTATAGGCTCTCTGTCACCA 59.755 50.000 19.25 0.00 39.32 4.17
1843 1958 2.952116 ACCTATAGGCTCTCTGTCACC 58.048 52.381 19.25 0.00 39.32 4.02
1844 1959 3.504520 GCTACCTATAGGCTCTCTGTCAC 59.495 52.174 19.25 0.00 39.32 3.67
1845 1960 3.138468 TGCTACCTATAGGCTCTCTGTCA 59.862 47.826 19.25 3.27 39.32 3.58
1846 1961 3.757270 TGCTACCTATAGGCTCTCTGTC 58.243 50.000 19.25 0.76 39.32 3.51
1847 1962 3.885976 TGCTACCTATAGGCTCTCTGT 57.114 47.619 19.25 0.00 39.32 3.41
1848 1963 5.244851 TGATTTGCTACCTATAGGCTCTCTG 59.755 44.000 19.25 4.12 39.32 3.35
1849 1964 5.398236 TGATTTGCTACCTATAGGCTCTCT 58.602 41.667 19.25 1.15 39.32 3.10
1850 1965 5.730296 TGATTTGCTACCTATAGGCTCTC 57.270 43.478 19.25 6.36 39.32 3.20
1851 1966 5.221742 GGTTGATTTGCTACCTATAGGCTCT 60.222 44.000 19.25 1.94 39.04 4.09
1852 1967 4.998033 GGTTGATTTGCTACCTATAGGCTC 59.002 45.833 19.25 8.46 39.04 4.70
1853 1968 4.412199 TGGTTGATTTGCTACCTATAGGCT 59.588 41.667 19.25 8.71 42.10 4.58
1854 1969 4.714632 TGGTTGATTTGCTACCTATAGGC 58.285 43.478 19.25 5.61 42.10 3.93
1855 1970 6.174720 TCTGGTTGATTTGCTACCTATAGG 57.825 41.667 17.73 17.73 42.10 2.57
1856 1971 9.429359 CTTATCTGGTTGATTTGCTACCTATAG 57.571 37.037 0.00 0.00 42.10 1.31
1857 1972 8.375506 CCTTATCTGGTTGATTTGCTACCTATA 58.624 37.037 0.00 0.00 42.10 1.31
1858 1973 7.227156 CCTTATCTGGTTGATTTGCTACCTAT 58.773 38.462 0.00 0.00 42.10 2.57
1859 1974 6.409234 CCCTTATCTGGTTGATTTGCTACCTA 60.409 42.308 0.00 0.00 42.10 3.08
1860 1975 5.440610 CCTTATCTGGTTGATTTGCTACCT 58.559 41.667 0.00 0.00 42.10 3.08
1861 1976 4.580580 CCCTTATCTGGTTGATTTGCTACC 59.419 45.833 0.00 0.00 41.97 3.18
1877 1992 6.758806 TTTACCTTCCTGTATCCCCTTATC 57.241 41.667 0.00 0.00 0.00 1.75
1941 2056 6.759827 TGGAAAGTTATATGAGTAGCGGAAAC 59.240 38.462 0.00 0.00 0.00 2.78
1942 2057 6.880484 TGGAAAGTTATATGAGTAGCGGAAA 58.120 36.000 0.00 0.00 0.00 3.13
1943 2058 6.474140 TGGAAAGTTATATGAGTAGCGGAA 57.526 37.500 0.00 0.00 0.00 4.30
1944 2059 6.474140 TTGGAAAGTTATATGAGTAGCGGA 57.526 37.500 0.00 0.00 0.00 5.54
1945 2060 6.761714 ACTTTGGAAAGTTATATGAGTAGCGG 59.238 38.462 0.00 0.00 46.52 5.52
1946 2061 7.772332 ACTTTGGAAAGTTATATGAGTAGCG 57.228 36.000 0.00 0.00 46.52 4.26
2081 2198 5.006165 GCAATCTAATATAGCGCAGATGACC 59.994 44.000 11.47 0.00 0.00 4.02
2121 2238 5.720202 GGGGGAACAAAATGTACTTTGATC 58.280 41.667 12.96 10.57 38.35 2.92
2122 2239 5.738619 GGGGGAACAAAATGTACTTTGAT 57.261 39.130 12.96 2.98 38.35 2.57
2194 2311 3.306472 TTAAAGTGGGAGGCACAACTT 57.694 42.857 0.00 0.00 0.00 2.66
2254 2371 9.520515 ACATGAACCTTGATGTATTTAGAAAGT 57.479 29.630 0.00 0.00 33.22 2.66
2315 2432 1.991121 TGGTGTTCAGAGTCGTAGGT 58.009 50.000 0.00 0.00 0.00 3.08
2397 2514 7.758528 CAGCCAAATAAGAAATGAGAAAGGAAG 59.241 37.037 0.00 0.00 0.00 3.46
2457 2574 1.941325 CTCCGAATCCCAGCTGTAAC 58.059 55.000 13.81 0.00 0.00 2.50
2478 2595 1.212688 CCTATTCCACATCCAGCACCA 59.787 52.381 0.00 0.00 0.00 4.17
2517 2634 6.044682 GTCATATGCAATTCCCTTTCCAAAG 58.955 40.000 0.00 0.00 35.79 2.77
2547 2664 6.730447 TCTCCTGATGTTTGAATATTTCCCA 58.270 36.000 0.00 0.00 0.00 4.37
2595 2712 4.163458 TGGGTTACTGCTTACTCATAAGGG 59.837 45.833 0.00 0.00 38.64 3.95
2616 2733 6.704493 TGTGTTAGTACAAAAGCTTAGAGTGG 59.296 38.462 0.00 0.00 35.69 4.00
2681 2798 0.039618 GCCCCCTCTGTGGATGAAAA 59.960 55.000 0.00 0.00 38.35 2.29
2684 2801 1.229951 AAGCCCCCTCTGTGGATGA 60.230 57.895 0.00 0.00 38.35 2.92
2727 2844 7.594758 CCGGCCAATTGACATTTATAATAACAG 59.405 37.037 7.12 0.00 0.00 3.16
2851 3043 2.455674 TCACCTCGTCAAACAGGATG 57.544 50.000 0.00 0.00 46.00 3.51
2886 3078 1.014044 TGTCGTCGCTTTGATCAGCC 61.014 55.000 0.00 0.00 36.31 4.85
2938 3130 4.889409 ACCTGTTTGTTCATGTGATGTTCT 59.111 37.500 0.00 0.00 0.00 3.01
3012 3215 0.716108 GATGGAACGTCAGACAAGCG 59.284 55.000 0.41 0.00 0.00 4.68
3041 3244 1.336332 CGTATCTCGCTGAATCCCTGG 60.336 57.143 0.00 0.00 0.00 4.45
3276 3487 9.344772 ACTTAAATACAGACACCATGTTTAACA 57.655 29.630 0.00 0.00 32.02 2.41
3312 3523 1.374252 GCGAGGTGACGTTGACCAT 60.374 57.895 17.33 5.31 35.76 3.55
3314 3525 2.022129 CAGCGAGGTGACGTTGACC 61.022 63.158 9.20 9.20 44.63 4.02
3338 3549 3.370366 CAGACAGAAGTATGAACAGCAGC 59.630 47.826 0.00 0.00 39.28 5.25
3356 3567 2.099756 GCTTAACAATGATGCCCCAGAC 59.900 50.000 0.00 0.00 0.00 3.51
3388 3599 0.739561 GTACTACTGCCGTGGAGGAG 59.260 60.000 0.00 3.62 45.00 3.69
3397 3608 2.107950 TTGGTGCATGTACTACTGCC 57.892 50.000 13.86 0.00 37.59 4.85
3410 3621 1.226030 ACGTAGGAAGCGTTTGGTGC 61.226 55.000 0.00 0.00 39.79 5.01
3479 3699 1.676968 TCCAATGGTGTGGGAGACG 59.323 57.895 0.00 0.00 39.34 4.18
3488 3708 1.547372 CTTTCTTGCCCTCCAATGGTG 59.453 52.381 0.00 0.00 31.91 4.17
3506 3726 0.772124 TCCCCTGCAAGACTTCCCTT 60.772 55.000 0.00 0.00 34.07 3.95
3523 3743 6.486993 ACTTGGAACTTTGAATTCTACACTCC 59.513 38.462 7.05 8.01 0.00 3.85
3531 3751 5.398416 GCGTGTTACTTGGAACTTTGAATTC 59.602 40.000 0.00 0.00 0.00 2.17
3623 3843 4.563786 CCTGGAGACCTGGACTAAGAAAAC 60.564 50.000 0.00 0.00 44.09 2.43
3656 3876 7.201902 GGTGATAGAGTCTCTGATGATCTTGTT 60.202 40.741 12.92 0.00 0.00 2.83
3673 3893 3.181530 CGAAGCGTGTTTTGGTGATAGAG 60.182 47.826 0.00 0.00 0.00 2.43
3675 3895 3.103793 CGAAGCGTGTTTTGGTGATAG 57.896 47.619 0.00 0.00 0.00 2.08
3691 3911 5.010112 TGAAATAGAGGGAGTATGAGCGAAG 59.990 44.000 0.00 0.00 0.00 3.79
3692 3912 4.893524 TGAAATAGAGGGAGTATGAGCGAA 59.106 41.667 0.00 0.00 0.00 4.70
3693 3913 4.470602 TGAAATAGAGGGAGTATGAGCGA 58.529 43.478 0.00 0.00 0.00 4.93
3694 3914 4.855715 TGAAATAGAGGGAGTATGAGCG 57.144 45.455 0.00 0.00 0.00 5.03
3695 3915 9.213799 CTATTTTGAAATAGAGGGAGTATGAGC 57.786 37.037 15.22 0.00 46.87 4.26
3761 3981 9.329913 CGTTCCAAAATAGATAACTCAACTTTG 57.670 33.333 0.00 0.00 0.00 2.77
3762 3982 8.512138 CCGTTCCAAAATAGATAACTCAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
3763 3983 7.881232 TCCGTTCCAAAATAGATAACTCAACTT 59.119 33.333 0.00 0.00 0.00 2.66
3764 3984 7.391620 TCCGTTCCAAAATAGATAACTCAACT 58.608 34.615 0.00 0.00 0.00 3.16
3765 3985 7.201617 CCTCCGTTCCAAAATAGATAACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
3766 3986 6.821665 CCTCCGTTCCAAAATAGATAACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
3767 3987 6.346096 CCTCCGTTCCAAAATAGATAACTCA 58.654 40.000 0.00 0.00 0.00 3.41
3768 3988 5.758784 CCCTCCGTTCCAAAATAGATAACTC 59.241 44.000 0.00 0.00 0.00 3.01
3769 3989 5.427481 TCCCTCCGTTCCAAAATAGATAACT 59.573 40.000 0.00 0.00 0.00 2.24
3770 3990 5.677567 TCCCTCCGTTCCAAAATAGATAAC 58.322 41.667 0.00 0.00 0.00 1.89
3771 3991 5.427481 ACTCCCTCCGTTCCAAAATAGATAA 59.573 40.000 0.00 0.00 0.00 1.75
3772 3992 4.966805 ACTCCCTCCGTTCCAAAATAGATA 59.033 41.667 0.00 0.00 0.00 1.98
3773 3993 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3774 3994 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3775 3995 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3776 3996 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3777 3997 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3778 3998 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
3779 3999 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3780 4000 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
3781 4001 2.042162 AGTAAGTACTCCCTCCGTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
3782 4002 2.732763 AGTAAGTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
3783 4003 4.522114 AGTAGTAAGTACTCCCTCCGTTC 58.478 47.826 0.00 0.00 37.41 3.95
3784 4004 4.582973 AGTAGTAAGTACTCCCTCCGTT 57.417 45.455 0.00 0.00 37.41 4.44
3793 4013 6.391479 AGAACAGAGGGAGTAGTAAGTACT 57.609 41.667 0.00 0.00 45.34 2.73
3794 4014 8.572855 TTTAGAACAGAGGGAGTAGTAAGTAC 57.427 38.462 0.00 0.00 0.00 2.73
3795 4015 9.765295 ATTTTAGAACAGAGGGAGTAGTAAGTA 57.235 33.333 0.00 0.00 0.00 2.24
3796 4016 8.667592 ATTTTAGAACAGAGGGAGTAGTAAGT 57.332 34.615 0.00 0.00 0.00 2.24
3800 4020 9.892130 CATTTATTTTAGAACAGAGGGAGTAGT 57.108 33.333 0.00 0.00 0.00 2.73
3801 4021 9.892130 ACATTTATTTTAGAACAGAGGGAGTAG 57.108 33.333 0.00 0.00 0.00 2.57
3802 4022 9.886132 GACATTTATTTTAGAACAGAGGGAGTA 57.114 33.333 0.00 0.00 0.00 2.59
3803 4023 8.606830 AGACATTTATTTTAGAACAGAGGGAGT 58.393 33.333 0.00 0.00 0.00 3.85
3804 4024 9.103861 GAGACATTTATTTTAGAACAGAGGGAG 57.896 37.037 0.00 0.00 0.00 4.30
3805 4025 8.602424 TGAGACATTTATTTTAGAACAGAGGGA 58.398 33.333 0.00 0.00 0.00 4.20
3806 4026 8.792830 TGAGACATTTATTTTAGAACAGAGGG 57.207 34.615 0.00 0.00 0.00 4.30
3863 4083 9.273016 CCTCTCAAAATAAGTGTCTCAAGTTTA 57.727 33.333 0.00 0.00 0.00 2.01
3864 4084 7.993183 TCCTCTCAAAATAAGTGTCTCAAGTTT 59.007 33.333 0.00 0.00 0.00 2.66
3865 4085 7.509546 TCCTCTCAAAATAAGTGTCTCAAGTT 58.490 34.615 0.00 0.00 0.00 2.66
3866 4086 7.067496 TCCTCTCAAAATAAGTGTCTCAAGT 57.933 36.000 0.00 0.00 0.00 3.16
3867 4087 6.593382 CCTCCTCTCAAAATAAGTGTCTCAAG 59.407 42.308 0.00 0.00 0.00 3.02
3868 4088 6.467677 CCTCCTCTCAAAATAAGTGTCTCAA 58.532 40.000 0.00 0.00 0.00 3.02
3869 4089 5.046304 CCCTCCTCTCAAAATAAGTGTCTCA 60.046 44.000 0.00 0.00 0.00 3.27
3870 4090 5.187967 TCCCTCCTCTCAAAATAAGTGTCTC 59.812 44.000 0.00 0.00 0.00 3.36
3871 4091 5.094387 TCCCTCCTCTCAAAATAAGTGTCT 58.906 41.667 0.00 0.00 0.00 3.41
3872 4092 5.046231 ACTCCCTCCTCTCAAAATAAGTGTC 60.046 44.000 0.00 0.00 0.00 3.67
3873 4093 4.846940 ACTCCCTCCTCTCAAAATAAGTGT 59.153 41.667 0.00 0.00 0.00 3.55
3874 4094 5.428184 ACTCCCTCCTCTCAAAATAAGTG 57.572 43.478 0.00 0.00 0.00 3.16
3875 4095 6.023603 TGTACTCCCTCCTCTCAAAATAAGT 58.976 40.000 0.00 0.00 0.00 2.24
3876 4096 6.546428 TGTACTCCCTCCTCTCAAAATAAG 57.454 41.667 0.00 0.00 0.00 1.73
3877 4097 6.500751 AGTTGTACTCCCTCCTCTCAAAATAA 59.499 38.462 0.00 0.00 0.00 1.40
3878 4098 6.023603 AGTTGTACTCCCTCCTCTCAAAATA 58.976 40.000 0.00 0.00 0.00 1.40
3879 4099 4.846940 AGTTGTACTCCCTCCTCTCAAAAT 59.153 41.667 0.00 0.00 0.00 1.82
3880 4100 4.232091 AGTTGTACTCCCTCCTCTCAAAA 58.768 43.478 0.00 0.00 0.00 2.44
3881 4101 3.858135 AGTTGTACTCCCTCCTCTCAAA 58.142 45.455 0.00 0.00 0.00 2.69
3882 4102 3.544698 AGTTGTACTCCCTCCTCTCAA 57.455 47.619 0.00 0.00 0.00 3.02
3883 4103 3.432378 GAAGTTGTACTCCCTCCTCTCA 58.568 50.000 0.00 0.00 0.00 3.27
3884 4104 2.424246 CGAAGTTGTACTCCCTCCTCTC 59.576 54.545 0.00 0.00 0.00 3.20
3885 4105 2.225066 ACGAAGTTGTACTCCCTCCTCT 60.225 50.000 0.00 0.00 37.78 3.69
3886 4106 2.169330 ACGAAGTTGTACTCCCTCCTC 58.831 52.381 0.00 0.00 37.78 3.71
3887 4107 2.305858 ACGAAGTTGTACTCCCTCCT 57.694 50.000 0.00 0.00 37.78 3.69
3888 4108 3.500558 GTACGAAGTTGTACTCCCTCC 57.499 52.381 0.00 0.00 37.78 4.30
3896 4116 9.964303 TGTCACTTATTTTAGTACGAAGTTGTA 57.036 29.630 0.00 0.00 37.78 2.41
3897 4117 8.758715 GTGTCACTTATTTTAGTACGAAGTTGT 58.241 33.333 0.00 0.00 37.78 3.32
3898 4118 8.975439 AGTGTCACTTATTTTAGTACGAAGTTG 58.025 33.333 0.00 0.00 37.78 3.16
3899 4119 9.538508 AAGTGTCACTTATTTTAGTACGAAGTT 57.461 29.630 16.74 0.00 38.29 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.