Multiple sequence alignment - TraesCS3A01G404000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G404000 chr3A 100.000 6112 0 0 957 7068 649019622 649025733 0.000000e+00 11287.0
1 TraesCS3A01G404000 chr3A 100.000 619 0 0 1 619 649018666 649019284 0.000000e+00 1144.0
2 TraesCS3A01G404000 chr3A 95.588 136 6 0 6314 6449 469077563 469077428 1.190000e-52 219.0
3 TraesCS3A01G404000 chr3D 97.185 3020 65 6 957 3966 514262090 514265099 0.000000e+00 5088.0
4 TraesCS3A01G404000 chr3D 96.296 2187 44 12 4122 6296 514265092 514267253 0.000000e+00 3555.0
5 TraesCS3A01G404000 chr3D 92.283 635 27 6 1 619 514261453 514262081 0.000000e+00 881.0
6 TraesCS3A01G404000 chr3D 87.200 625 33 20 6448 7066 514267276 514267859 0.000000e+00 667.0
7 TraesCS3A01G404000 chr3D 95.930 172 5 2 3956 4126 250054190 250054020 1.940000e-70 278.0
8 TraesCS3A01G404000 chr3D 94.891 137 6 1 6315 6450 67064781 67064917 5.550000e-51 213.0
9 TraesCS3A01G404000 chr3D 85.714 63 4 5 2201 2261 524301216 524301275 2.130000e-05 62.1
10 TraesCS3A01G404000 chr3D 85.000 60 3 4 6647 6706 181108081 181108028 1.000000e-03 56.5
11 TraesCS3A01G404000 chr3B 96.034 2219 56 18 4122 6319 676612735 676614942 0.000000e+00 3581.0
12 TraesCS3A01G404000 chr3B 95.191 1705 58 8 2281 3966 676611043 676612742 0.000000e+00 2673.0
13 TraesCS3A01G404000 chr3B 96.452 930 27 1 990 1919 676609769 676610692 0.000000e+00 1530.0
14 TraesCS3A01G404000 chr3B 95.423 284 12 1 1921 2203 676610761 676611044 1.080000e-122 451.0
15 TraesCS3A01G404000 chr3B 85.360 444 18 18 198 619 676609034 676609452 3.940000e-112 416.0
16 TraesCS3A01G404000 chr3B 87.755 343 25 8 6443 6781 676614941 676615270 1.110000e-102 385.0
17 TraesCS3A01G404000 chr3B 90.000 300 14 10 6772 7066 676615291 676615579 2.410000e-99 374.0
18 TraesCS3A01G404000 chr3B 88.679 53 0 5 6646 6698 828525849 828525895 7.660000e-05 60.2
19 TraesCS3A01G404000 chr2D 97.576 165 3 1 3963 4126 142056949 142056785 1.500000e-71 281.0
20 TraesCS3A01G404000 chr2D 89.655 58 5 1 2202 2259 86080913 86080969 9.830000e-09 73.1
21 TraesCS3A01G404000 chr2D 97.436 39 1 0 6642 6680 565157010 565157048 4.580000e-07 67.6
22 TraesCS3A01G404000 chr5B 96.988 166 4 1 3963 4127 38605929 38605764 1.940000e-70 278.0
23 TraesCS3A01G404000 chr5B 93.617 141 7 2 6314 6454 354738151 354738013 7.180000e-50 209.0
24 TraesCS3A01G404000 chr5B 88.462 52 0 5 6647 6698 461133879 461133834 2.750000e-04 58.4
25 TraesCS3A01G404000 chr6A 95.906 171 5 2 3963 4132 115317249 115317418 6.980000e-70 276.0
26 TraesCS3A01G404000 chr6A 95.882 170 6 1 3963 4131 435778371 435778202 2.510000e-69 274.0
27 TraesCS3A01G404000 chr6A 99.213 127 1 0 6318 6444 99061399 99061525 5.510000e-56 230.0
28 TraesCS3A01G404000 chr5A 96.970 165 4 1 3963 4126 436260734 436260570 6.980000e-70 276.0
29 TraesCS3A01G404000 chr4B 96.970 165 4 1 3963 4126 54367162 54366998 6.980000e-70 276.0
30 TraesCS3A01G404000 chr4B 94.886 176 5 3 3954 4126 97895057 97894883 9.030000e-69 272.0
31 TraesCS3A01G404000 chr4B 90.625 64 5 1 2202 2265 41531501 41531439 4.540000e-12 84.2
32 TraesCS3A01G404000 chr4D 95.858 169 6 1 3962 4129 483683515 483683347 9.030000e-69 272.0
33 TraesCS3A01G404000 chr4D 92.500 40 2 1 2202 2241 82830155 82830117 1.000000e-03 56.5
34 TraesCS3A01G404000 chr1B 97.761 134 3 0 6316 6449 518809546 518809679 1.530000e-56 231.0
35 TraesCS3A01G404000 chr1B 97.674 129 3 0 6316 6444 625574599 625574727 9.230000e-54 222.0
36 TraesCS3A01G404000 chr1B 96.947 131 4 0 6317 6447 577672058 577672188 3.320000e-53 220.0
37 TraesCS3A01G404000 chr1B 90.541 74 6 1 2192 2265 156850349 156850421 5.840000e-16 97.1
38 TraesCS3A01G404000 chr7B 96.269 134 4 1 6311 6444 635493274 635493406 1.190000e-52 219.0
39 TraesCS3A01G404000 chr7B 94.891 137 6 1 6315 6450 678552459 678552323 5.550000e-51 213.0
40 TraesCS3A01G404000 chr7B 88.235 68 6 2 2198 2265 445020846 445020781 5.880000e-11 80.5
41 TraesCS3A01G404000 chr4A 95.082 61 2 1 2202 2262 467263324 467263383 2.100000e-15 95.3
42 TraesCS3A01G404000 chr4A 89.231 65 6 1 2201 2265 27643611 27643548 5.880000e-11 80.5
43 TraesCS3A01G404000 chr5D 90.278 72 4 3 2195 2265 281024881 281024812 2.720000e-14 91.6
44 TraesCS3A01G404000 chr5D 86.585 82 10 1 2202 2283 133437775 133437855 9.770000e-14 89.8
45 TraesCS3A01G404000 chr5D 83.529 85 9 2 2202 2282 80294389 80294306 2.730000e-09 75.0
46 TraesCS3A01G404000 chr5D 88.889 63 3 4 2200 2259 469505760 469505699 2.730000e-09 75.0
47 TraesCS3A01G404000 chr5D 93.617 47 2 1 2198 2243 282357449 282357403 1.270000e-07 69.4
48 TraesCS3A01G404000 chr1D 92.308 65 3 2 2199 2262 277362518 277362581 2.720000e-14 91.6
49 TraesCS3A01G404000 chr1A 92.308 65 3 2 2199 2262 350017094 350017157 2.720000e-14 91.6
50 TraesCS3A01G404000 chr7D 88.889 63 5 2 2198 2259 59711289 59711350 7.600000e-10 76.8
51 TraesCS3A01G404000 chr7D 87.097 62 6 2 2198 2259 66954724 66954783 1.270000e-07 69.4
52 TraesCS3A01G404000 chr7D 82.022 89 8 6 2202 2282 93505387 93505475 1.270000e-07 69.4
53 TraesCS3A01G404000 chr6D 86.885 61 6 2 2202 2262 330111495 330111437 4.580000e-07 67.6
54 TraesCS3A01G404000 chr6D 88.462 52 0 5 6647 6698 1548803 1548758 2.750000e-04 58.4
55 TraesCS3A01G404000 chr6D 88.462 52 0 4 6647 6698 84938506 84938461 2.750000e-04 58.4
56 TraesCS3A01G404000 chr6D 92.500 40 3 0 2202 2241 457730219 457730258 2.750000e-04 58.4
57 TraesCS3A01G404000 chr7A 88.679 53 0 5 6646 6698 594577341 594577295 7.660000e-05 60.2
58 TraesCS3A01G404000 chr2A 88.679 53 0 5 6646 6698 425828796 425828750 7.660000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G404000 chr3A 649018666 649025733 7067 False 6215.500000 11287 100.000000 1 7068 2 chr3A.!!$F1 7067
1 TraesCS3A01G404000 chr3D 514261453 514267859 6406 False 2547.750000 5088 93.241000 1 7066 4 chr3D.!!$F3 7065
2 TraesCS3A01G404000 chr3B 676609034 676615579 6545 False 1344.285714 3581 92.316429 198 7066 7 chr3B.!!$F2 6868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 289 0.039798 TCTTTTCGTCACGTCTCCCG 60.040 55.000 0.0 0.0 44.03 5.14 F
308 314 0.251165 GATCCCGAGAGAGAGAGGGG 60.251 65.000 0.0 0.0 43.92 4.79 F
1909 2210 0.958091 TCCGAAATGCACCTGGTTTG 59.042 50.000 0.0 0.0 0.00 2.93 F
3553 3944 1.807142 TGTGCTCACGTTGTTGTTCAA 59.193 42.857 0.0 0.0 0.00 2.69 F
3977 4368 0.396001 GAGCTACTCCCTCCGTTCCT 60.396 60.000 0.0 0.0 0.00 3.36 F
3978 4369 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.0 0.0 0.00 2.94 F
5712 6112 0.827368 AGATCCCTGACGAGAAAGCC 59.173 55.000 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2333 0.314935 ACCATTGAGCAAAGCAACCG 59.685 50.000 0.00 0.0 0.00 4.44 R
2115 2485 3.181483 CCATTTACTCAGCCCTGATTTGC 60.181 47.826 0.00 0.0 39.13 3.68 R
3747 4138 1.168407 TTGCACTCTCTGCCTGCAAC 61.168 55.000 0.24 0.0 46.51 4.17 R
5486 5885 1.475213 GCTTAACCTGAGGAATCGGGG 60.475 57.143 4.99 0.0 40.42 5.73 R
5712 6112 1.789464 GCATCTACTCGCTCATTTCCG 59.211 52.381 0.00 0.0 0.00 4.30 R
5977 6388 1.068264 TGTGTGAGTTAGAGCAGAGCG 60.068 52.381 0.00 0.0 0.00 5.03 R
6802 7252 0.035881 CAGAAACTGCCCAGCTGAGA 59.964 55.000 17.39 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.134694 GATTTGGCGCCAGTCGAAC 59.865 57.895 30.75 14.80 41.67 3.95
120 121 2.434359 GGAGGCGACCGAACCAAG 60.434 66.667 0.00 0.00 0.00 3.61
262 268 0.431233 CTCTGCAGTTCGTTCGTTCG 59.569 55.000 14.67 0.00 0.00 3.95
269 275 3.783223 GCAGTTCGTTCGTTCGTTCTTTT 60.783 43.478 2.67 0.00 0.00 2.27
283 289 0.039798 TCTTTTCGTCACGTCTCCCG 60.040 55.000 0.00 0.00 44.03 5.14
306 312 2.040278 AGATGATCCCGAGAGAGAGAGG 59.960 54.545 0.00 0.00 0.00 3.69
308 314 0.251165 GATCCCGAGAGAGAGAGGGG 60.251 65.000 0.00 0.00 43.92 4.79
577 603 2.621407 GCCCAATCAAATCTCAGTCCCA 60.621 50.000 0.00 0.00 0.00 4.37
1488 1789 1.074850 GAGAGGGAGGGAGGAAGGG 60.075 68.421 0.00 0.00 0.00 3.95
1489 1790 2.040359 GAGGGAGGGAGGAAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
1490 1791 3.711782 AGGGAGGGAGGAAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
1656 1957 3.181495 GGAGACTCGATGAGTTCGTCATT 60.181 47.826 0.38 0.00 46.64 2.57
1817 2118 3.770388 TGGTATCGGTAGGTGAATTGTGA 59.230 43.478 0.00 0.00 0.00 3.58
1841 2142 5.245526 AGTTTTAGTGTGAATCGTCCTAGGT 59.754 40.000 9.08 0.00 0.00 3.08
1909 2210 0.958091 TCCGAAATGCACCTGGTTTG 59.042 50.000 0.00 0.00 0.00 2.93
1919 2220 3.389983 TGCACCTGGTTTGAAGTACTACT 59.610 43.478 0.00 0.00 0.00 2.57
1952 2321 7.870445 TGACTGTGCCTTAAATTAAAATTCACC 59.130 33.333 0.00 0.00 0.00 4.02
1964 2333 4.834357 AAAATTCACCCTGCATTTTTGC 57.166 36.364 0.00 0.00 31.05 3.68
2064 2434 5.970317 TGTTTGATGGACGACTAAGACTA 57.030 39.130 0.00 0.00 0.00 2.59
2115 2485 3.445096 GGGTTCTGGTGATTCAAGATTGG 59.555 47.826 0.00 0.00 0.00 3.16
2273 2643 6.034150 GCCTACAAAAATGTATTTTGGTACGC 59.966 38.462 15.95 15.95 40.98 4.42
2479 2852 8.353423 AGGAGTAAAATGCAACAAATATGACT 57.647 30.769 0.00 0.00 0.00 3.41
2575 2965 7.264373 ACTTTTGTTTCAGGTTCTATCAGTG 57.736 36.000 0.00 0.00 0.00 3.66
2636 3026 6.550163 ACTGTACAGAAAGGGTTAGTCTCTA 58.450 40.000 29.30 0.00 0.00 2.43
2654 3044 3.220110 TCTATCCTGTAACTACCTGCCG 58.780 50.000 0.00 0.00 0.00 5.69
2811 3201 4.567971 TGTTCTGGCTTTTAAATGGCATG 58.432 39.130 24.46 18.97 37.84 4.06
2813 3203 4.454728 TCTGGCTTTTAAATGGCATGTC 57.545 40.909 24.46 0.00 37.84 3.06
3249 3640 9.955208 TTCATGAATGCTCAATGATTAACATAC 57.045 29.630 3.38 0.00 38.38 2.39
3275 3666 4.744631 GCTCTGCTCTTAGACTCTAATTGC 59.255 45.833 12.61 12.61 0.00 3.56
3376 3767 7.103641 TCTCCGCTAAGTATTTTTGTCAAGAT 58.896 34.615 0.00 0.00 0.00 2.40
3553 3944 1.807142 TGTGCTCACGTTGTTGTTCAA 59.193 42.857 0.00 0.00 0.00 2.69
3688 4079 9.159364 GATAAAATAACAAAGAAGGTACCGACT 57.841 33.333 6.18 7.16 0.00 4.18
3747 4138 7.011189 CGGGAAGTTTGTAAACAATAACTACG 58.989 38.462 9.85 2.02 41.30 3.51
3902 4293 5.880332 GCTGGAGTAATCAAACCATTAGTGA 59.120 40.000 0.00 0.00 0.00 3.41
3963 4354 5.950758 TTTTTCGGTTTTGCTATGAGCTA 57.049 34.783 0.00 0.00 42.97 3.32
3964 4355 4.939509 TTTCGGTTTTGCTATGAGCTAC 57.060 40.909 0.00 0.00 42.97 3.58
3965 4356 3.887621 TCGGTTTTGCTATGAGCTACT 57.112 42.857 0.00 0.00 42.97 2.57
3966 4357 3.782046 TCGGTTTTGCTATGAGCTACTC 58.218 45.455 0.00 0.00 42.97 2.59
3967 4358 2.866762 CGGTTTTGCTATGAGCTACTCC 59.133 50.000 0.00 0.00 42.97 3.85
3968 4359 3.206964 GGTTTTGCTATGAGCTACTCCC 58.793 50.000 0.00 0.00 42.97 4.30
3969 4360 3.118223 GGTTTTGCTATGAGCTACTCCCT 60.118 47.826 0.00 0.00 42.97 4.20
3970 4361 4.123506 GTTTTGCTATGAGCTACTCCCTC 58.876 47.826 0.00 0.00 42.97 4.30
3971 4362 2.002505 TGCTATGAGCTACTCCCTCC 57.997 55.000 0.00 0.00 42.97 4.30
3972 4363 0.885196 GCTATGAGCTACTCCCTCCG 59.115 60.000 0.00 0.00 38.45 4.63
3973 4364 1.820090 GCTATGAGCTACTCCCTCCGT 60.820 57.143 0.00 0.00 38.45 4.69
3974 4365 2.588620 CTATGAGCTACTCCCTCCGTT 58.411 52.381 0.00 0.00 0.00 4.44
3975 4366 1.404843 ATGAGCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
3976 4367 0.683504 TGAGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
3977 4368 0.396001 GAGCTACTCCCTCCGTTCCT 60.396 60.000 0.00 0.00 0.00 3.36
3978 4369 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
3979 4370 1.287146 AGCTACTCCCTCCGTTCCTAA 59.713 52.381 0.00 0.00 0.00 2.69
3980 4371 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
3981 4372 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
3982 4373 3.492829 GCTACTCCCTCCGTTCCTAAATG 60.493 52.174 0.00 0.00 0.00 2.32
3983 4374 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3984 4375 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3985 4376 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3986 4377 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3987 4378 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3988 4379 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3989 4380 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3990 4381 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3991 4382 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3992 4383 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3993 4384 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3994 4385 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3995 4386 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
3996 4387 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
4021 4412 8.909708 ACATTTCAAATGGAATACAACATACG 57.090 30.769 14.70 0.00 34.91 3.06
4022 4413 7.973388 ACATTTCAAATGGAATACAACATACGG 59.027 33.333 14.70 0.00 34.91 4.02
4023 4414 7.689446 TTTCAAATGGAATACAACATACGGA 57.311 32.000 0.00 0.00 34.91 4.69
4024 4415 7.873719 TTCAAATGGAATACAACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
4025 4416 7.258022 TCAAATGGAATACAACATACGGATG 57.742 36.000 5.94 5.94 39.16 3.51
4027 4418 7.988028 TCAAATGGAATACAACATACGGATGTA 59.012 33.333 15.10 0.00 45.93 2.29
4028 4419 8.783093 CAAATGGAATACAACATACGGATGTAT 58.217 33.333 15.10 8.21 45.93 2.29
4029 4420 8.918202 AATGGAATACAACATACGGATGTATT 57.082 30.769 15.10 10.37 45.93 1.89
4031 4422 9.653287 ATGGAATACAACATACGGATGTATTAG 57.347 33.333 15.10 7.26 45.93 1.73
4032 4423 8.862085 TGGAATACAACATACGGATGTATTAGA 58.138 33.333 15.10 0.00 45.93 2.10
4033 4424 9.136952 GGAATACAACATACGGATGTATTAGAC 57.863 37.037 15.10 5.13 45.93 2.59
4034 4425 9.687210 GAATACAACATACGGATGTATTAGACA 57.313 33.333 15.10 0.00 45.93 3.41
4066 4457 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4067 4458 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4068 4459 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4069 4460 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4070 4461 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4071 4462 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4072 4463 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4073 4464 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4074 4465 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4075 4466 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4076 4467 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4077 4468 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4078 4469 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4079 4470 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
4080 4471 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
4081 4472 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
4082 4473 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
4083 4474 3.792401 TGCTCCGTATGTAGTCATTTGG 58.208 45.455 0.00 0.00 35.70 3.28
4084 4475 3.196901 TGCTCCGTATGTAGTCATTTGGT 59.803 43.478 0.00 0.00 35.70 3.67
4085 4476 3.555956 GCTCCGTATGTAGTCATTTGGTG 59.444 47.826 0.00 0.00 35.70 4.17
4086 4477 4.119862 CTCCGTATGTAGTCATTTGGTGG 58.880 47.826 0.00 0.00 35.70 4.61
4087 4478 3.770388 TCCGTATGTAGTCATTTGGTGGA 59.230 43.478 0.00 0.00 35.70 4.02
4088 4479 4.223255 TCCGTATGTAGTCATTTGGTGGAA 59.777 41.667 0.00 0.00 35.70 3.53
4089 4480 5.104693 TCCGTATGTAGTCATTTGGTGGAAT 60.105 40.000 0.00 0.00 35.70 3.01
4090 4481 5.236478 CCGTATGTAGTCATTTGGTGGAATC 59.764 44.000 0.00 0.00 35.70 2.52
4091 4482 6.049149 CGTATGTAGTCATTTGGTGGAATCT 58.951 40.000 0.00 0.00 35.70 2.40
4092 4483 6.201044 CGTATGTAGTCATTTGGTGGAATCTC 59.799 42.308 0.00 0.00 35.70 2.75
4093 4484 5.762179 TGTAGTCATTTGGTGGAATCTCT 57.238 39.130 0.00 0.00 0.00 3.10
4094 4485 6.867519 TGTAGTCATTTGGTGGAATCTCTA 57.132 37.500 0.00 0.00 0.00 2.43
4095 4486 6.878317 TGTAGTCATTTGGTGGAATCTCTAG 58.122 40.000 0.00 0.00 0.00 2.43
4096 4487 6.667848 TGTAGTCATTTGGTGGAATCTCTAGA 59.332 38.462 0.00 0.00 0.00 2.43
4097 4488 6.627087 AGTCATTTGGTGGAATCTCTAGAA 57.373 37.500 0.00 0.00 0.00 2.10
4098 4489 7.020827 AGTCATTTGGTGGAATCTCTAGAAA 57.979 36.000 0.00 0.00 0.00 2.52
4099 4490 7.108847 AGTCATTTGGTGGAATCTCTAGAAAG 58.891 38.462 0.00 0.00 0.00 2.62
4100 4491 7.038017 AGTCATTTGGTGGAATCTCTAGAAAGA 60.038 37.037 0.00 0.00 0.00 2.52
4101 4492 7.065204 GTCATTTGGTGGAATCTCTAGAAAGAC 59.935 40.741 0.00 0.00 0.00 3.01
4102 4493 6.688073 TTTGGTGGAATCTCTAGAAAGACT 57.312 37.500 0.00 0.00 0.00 3.24
4103 4494 6.688073 TTGGTGGAATCTCTAGAAAGACTT 57.312 37.500 0.00 0.00 0.00 3.01
4104 4495 7.792364 TTGGTGGAATCTCTAGAAAGACTTA 57.208 36.000 0.00 0.00 0.00 2.24
4105 4496 7.979786 TGGTGGAATCTCTAGAAAGACTTAT 57.020 36.000 0.00 0.00 0.00 1.73
4106 4497 9.488762 TTGGTGGAATCTCTAGAAAGACTTATA 57.511 33.333 0.00 0.00 0.00 0.98
4107 4498 9.661954 TGGTGGAATCTCTAGAAAGACTTATAT 57.338 33.333 0.00 0.00 0.00 0.86
4121 4512 9.508642 GAAAGACTTATATTTAGGAATGGAGGG 57.491 37.037 0.00 0.00 0.00 4.30
4122 4513 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
4123 4514 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
4124 4515 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
4128 4519 9.684702 TTATATTTAGGAATGGAGGGAGTACTT 57.315 33.333 0.00 0.00 0.00 2.24
4135 4526 5.367060 GGAATGGAGGGAGTACTTCAGTATT 59.633 44.000 2.92 0.00 32.54 1.89
4371 4763 0.947244 GTGTGCAAAGGACACTCCAG 59.053 55.000 13.47 0.00 39.61 3.86
4438 4830 1.538687 AAAGGCCACCATGCTCTTGC 61.539 55.000 5.01 0.00 40.20 4.01
4526 4918 4.033776 CACGGGGCTGTGGTGGAT 62.034 66.667 3.02 0.00 36.20 3.41
4743 5142 9.357652 CAAACATTTTAAGTTCATATCTGGTGG 57.642 33.333 0.00 0.00 0.00 4.61
4766 5165 6.000219 GGCATTACATACTTGTGATCTCCAT 59.000 40.000 0.00 0.00 36.53 3.41
4772 5171 5.605908 ACATACTTGTGATCTCCATGAGGAT 59.394 40.000 0.00 0.00 37.80 3.24
5079 5478 2.892852 TGGAGATCTTGCAAAGTTTGGG 59.107 45.455 17.11 0.00 46.34 4.12
5151 5550 4.039151 TCTCGATGAAGATCAGCTTGTC 57.961 45.455 0.00 0.00 36.83 3.18
5486 5885 6.472486 GCGCTAATTTCTAACATTCCCTTTTC 59.528 38.462 0.00 0.00 0.00 2.29
5495 5895 2.031870 CATTCCCTTTTCCCCGATTCC 58.968 52.381 0.00 0.00 0.00 3.01
5590 5990 0.971447 ACGTGGTCTAAGAGCCCTCC 60.971 60.000 0.00 0.00 0.00 4.30
5658 6058 3.811722 TTTCTGTAATGAACGCTGCAG 57.188 42.857 10.11 10.11 0.00 4.41
5712 6112 0.827368 AGATCCCTGACGAGAAAGCC 59.173 55.000 0.00 0.00 0.00 4.35
5880 6280 4.202172 TGGTACTCGATCTGTGAAACACAA 60.202 41.667 6.08 0.00 45.67 3.33
5977 6388 1.002544 ACTTGCACTGCCTCCTCTAAC 59.997 52.381 0.00 0.00 0.00 2.34
5980 6391 1.893786 CACTGCCTCCTCTAACGCT 59.106 57.895 0.00 0.00 0.00 5.07
5992 6404 3.242936 CCTCTAACGCTCTGCTCTAACTC 60.243 52.174 0.00 0.00 0.00 3.01
5993 6405 3.344515 TCTAACGCTCTGCTCTAACTCA 58.655 45.455 0.00 0.00 0.00 3.41
5994 6406 2.355717 AACGCTCTGCTCTAACTCAC 57.644 50.000 0.00 0.00 0.00 3.51
5995 6407 1.248486 ACGCTCTGCTCTAACTCACA 58.752 50.000 0.00 0.00 0.00 3.58
6055 6467 2.285256 CGCGTACATGCTGTCAAGAATC 60.285 50.000 0.00 0.00 0.00 2.52
6105 6517 8.611654 ACACCGTATATTATGTAAAATGTCCC 57.388 34.615 0.00 0.00 0.00 4.46
6288 6701 7.144000 ACATGTTTCTCATTCTTTCTTTCTGC 58.856 34.615 0.00 0.00 34.09 4.26
6296 6709 1.589716 CTTTCTTTCTGCTGCCCCCG 61.590 60.000 0.00 0.00 0.00 5.73
6297 6710 3.567579 TTCTTTCTGCTGCCCCCGG 62.568 63.158 0.00 0.00 0.00 5.73
6298 6711 4.351054 CTTTCTGCTGCCCCCGGT 62.351 66.667 0.00 0.00 0.00 5.28
6299 6712 3.868200 CTTTCTGCTGCCCCCGGTT 62.868 63.158 0.00 0.00 0.00 4.44
6319 6734 3.938109 GGGGGCAGCTAGCTTATAC 57.062 57.895 16.46 6.10 44.79 1.47
6320 6735 1.353091 GGGGGCAGCTAGCTTATACT 58.647 55.000 16.46 0.00 44.79 2.12
6321 6736 1.276705 GGGGGCAGCTAGCTTATACTC 59.723 57.143 16.46 4.77 44.79 2.59
6322 6737 1.276705 GGGGCAGCTAGCTTATACTCC 59.723 57.143 16.46 10.69 44.79 3.85
6323 6738 1.276705 GGGCAGCTAGCTTATACTCCC 59.723 57.143 16.46 14.21 44.79 4.30
6324 6739 2.252714 GGCAGCTAGCTTATACTCCCT 58.747 52.381 16.46 0.00 44.79 4.20
6325 6740 2.232696 GGCAGCTAGCTTATACTCCCTC 59.767 54.545 16.46 0.00 44.79 4.30
6326 6741 2.232696 GCAGCTAGCTTATACTCCCTCC 59.767 54.545 16.46 0.00 41.15 4.30
6327 6742 2.490115 CAGCTAGCTTATACTCCCTCCG 59.510 54.545 16.46 0.00 0.00 4.63
6328 6743 2.108601 AGCTAGCTTATACTCCCTCCGT 59.891 50.000 12.68 0.00 0.00 4.69
6329 6744 2.488937 GCTAGCTTATACTCCCTCCGTC 59.511 54.545 7.70 0.00 0.00 4.79
6330 6745 3.811454 GCTAGCTTATACTCCCTCCGTCT 60.811 52.174 7.70 0.00 0.00 4.18
6331 6746 2.588620 AGCTTATACTCCCTCCGTCTG 58.411 52.381 0.00 0.00 0.00 3.51
6332 6747 2.175069 AGCTTATACTCCCTCCGTCTGA 59.825 50.000 0.00 0.00 0.00 3.27
6333 6748 2.957006 GCTTATACTCCCTCCGTCTGAA 59.043 50.000 0.00 0.00 0.00 3.02
6334 6749 3.383825 GCTTATACTCCCTCCGTCTGAAA 59.616 47.826 0.00 0.00 0.00 2.69
6335 6750 4.142004 GCTTATACTCCCTCCGTCTGAAAA 60.142 45.833 0.00 0.00 0.00 2.29
6336 6751 5.453480 GCTTATACTCCCTCCGTCTGAAAAT 60.453 44.000 0.00 0.00 0.00 1.82
6337 6752 6.239232 GCTTATACTCCCTCCGTCTGAAAATA 60.239 42.308 0.00 0.00 0.00 1.40
6338 6753 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
6339 6754 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
6340 6755 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
6341 6756 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
6342 6757 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
6343 6758 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
6344 6759 4.562757 CCCTCCGTCTGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
6345 6760 5.178797 CCTCCGTCTGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
6346 6761 5.292101 CCTCCGTCTGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
6347 6762 5.789521 TCCGTCTGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
6348 6763 6.227522 TCCGTCTGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
6349 6764 6.708502 TCCGTCTGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
6350 6765 7.227711 TCCGTCTGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
6351 6766 8.023128 CCGTCTGAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
6352 6767 8.843733 CGTCTGAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
6353 6768 9.897744 GTCTGAAAATACTTGTCATCAAAATGA 57.102 29.630 0.00 0.00 39.63 2.57
6363 6778 9.492973 ACTTGTCATCAAAATGAATAAAAAGGG 57.507 29.630 0.00 0.00 43.42 3.95
6364 6779 9.709495 CTTGTCATCAAAATGAATAAAAAGGGA 57.291 29.630 0.00 0.00 43.42 4.20
6366 6781 9.656040 TGTCATCAAAATGAATAAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
6367 6782 9.657419 GTCATCAAAATGAATAAAAAGGGATGT 57.343 29.630 0.00 0.00 43.42 3.06
6426 6841 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
6427 6842 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
6428 6843 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
6429 6844 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
6430 6845 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
6431 6846 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
6432 6847 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
6433 6848 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
6434 6849 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
6435 6850 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
6436 6851 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
6437 6852 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
6438 6853 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
6439 6854 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
6440 6855 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
6441 6856 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
6460 6875 3.372060 GAGTAGTTGTTGTTGGCAAAGC 58.628 45.455 0.00 0.00 36.22 3.51
6481 6896 2.736721 CTGTACACACCAATCAACCTCG 59.263 50.000 0.00 0.00 0.00 4.63
6547 6962 4.045636 ACAGGTTTCAACTTTCATGCAC 57.954 40.909 0.00 0.00 0.00 4.57
6558 6976 6.094742 TCAACTTTCATGCACTGTCTGTAAAA 59.905 34.615 0.00 0.00 0.00 1.52
6565 6983 3.568007 TGCACTGTCTGTAAAAACATCCC 59.432 43.478 0.00 0.00 0.00 3.85
6568 6986 4.062991 ACTGTCTGTAAAAACATCCCGAC 58.937 43.478 0.00 0.00 0.00 4.79
6586 7004 2.000447 GACGTTTGTCCTGCAGTATCC 59.000 52.381 13.81 0.00 39.30 2.59
6607 7025 0.445436 CATCTGTTCAAGCCTGTCGC 59.555 55.000 0.00 0.00 37.98 5.19
6608 7026 1.016130 ATCTGTTCAAGCCTGTCGCG 61.016 55.000 0.00 0.00 44.76 5.87
6609 7027 1.956170 CTGTTCAAGCCTGTCGCGT 60.956 57.895 5.77 0.00 44.76 6.01
6611 7029 1.204312 GTTCAAGCCTGTCGCGTTC 59.796 57.895 5.77 1.06 44.76 3.95
6612 7030 1.069090 TTCAAGCCTGTCGCGTTCT 59.931 52.632 5.77 0.00 44.76 3.01
6616 7034 3.112709 GCCTGTCGCGTTCTGGAC 61.113 66.667 24.05 9.61 0.00 4.02
6641 7060 3.254166 TGTGATTTCTTCAGGAAAGCTGC 59.746 43.478 0.00 0.00 46.71 5.25
6643 7062 4.082354 GTGATTTCTTCAGGAAAGCTGCAT 60.082 41.667 1.02 0.00 46.71 3.96
6698 7117 8.665906 AGAATTATAATTATGGAACGGAGGGAA 58.334 33.333 10.68 0.00 0.00 3.97
6706 7125 1.607148 GGAACGGAGGGAACACTTTTG 59.393 52.381 0.00 0.00 0.00 2.44
6720 7139 7.414540 GGGAACACTTTTGATGATCACTATCAC 60.415 40.741 0.00 0.00 44.79 3.06
6726 7145 9.404848 ACTTTTGATGATCACTATCACATGAAT 57.595 29.630 0.00 0.00 44.79 2.57
6763 7182 2.479566 TCTTCAGGTCAATGGTGCTC 57.520 50.000 0.00 0.00 0.00 4.26
6766 7185 2.189594 TCAGGTCAATGGTGCTCAAG 57.810 50.000 0.00 0.00 0.00 3.02
6769 7188 2.886523 CAGGTCAATGGTGCTCAAGAAA 59.113 45.455 0.00 0.00 0.00 2.52
6770 7189 2.887152 AGGTCAATGGTGCTCAAGAAAC 59.113 45.455 0.00 0.00 0.00 2.78
6772 7191 1.879380 TCAATGGTGCTCAAGAAACGG 59.121 47.619 0.00 0.00 0.00 4.44
6774 7193 1.981256 ATGGTGCTCAAGAAACGGTT 58.019 45.000 0.00 0.00 0.00 4.44
6775 7194 1.305201 TGGTGCTCAAGAAACGGTTC 58.695 50.000 4.63 4.63 0.00 3.62
6776 7195 1.305201 GGTGCTCAAGAAACGGTTCA 58.695 50.000 16.95 0.00 36.09 3.18
6777 7196 1.002792 GGTGCTCAAGAAACGGTTCAC 60.003 52.381 16.95 3.83 36.09 3.18
6778 7197 1.668751 GTGCTCAAGAAACGGTTCACA 59.331 47.619 16.95 2.45 36.09 3.58
6805 7255 3.366052 AGAGGGTCTGAAGTCTCTCTC 57.634 52.381 1.63 0.00 31.67 3.20
6820 7270 0.324285 CTCTCAGCTGGGCAGTTTCT 59.676 55.000 15.13 0.00 0.00 2.52
6821 7271 0.035881 TCTCAGCTGGGCAGTTTCTG 59.964 55.000 15.13 0.00 34.12 3.02
6845 7295 1.128692 GAAAGAAAGGTGGATGTCGCG 59.871 52.381 0.00 0.00 0.00 5.87
6990 7440 4.289101 TCTCGTCACCGTCCCCCA 62.289 66.667 0.00 0.00 35.01 4.96
6995 7445 4.242586 TCACCGTCCCCCACTCCA 62.243 66.667 0.00 0.00 0.00 3.86
7000 7450 2.531942 GTCCCCCACTCCACCCTT 60.532 66.667 0.00 0.00 0.00 3.95
7002 7452 2.204151 CCCCCACTCCACCCTTCT 60.204 66.667 0.00 0.00 0.00 2.85
7005 7455 2.301738 CCCACTCCACCCTTCTCCC 61.302 68.421 0.00 0.00 0.00 4.30
7006 7456 2.301738 CCACTCCACCCTTCTCCCC 61.302 68.421 0.00 0.00 0.00 4.81
7007 7457 1.538876 CACTCCACCCTTCTCCCCA 60.539 63.158 0.00 0.00 0.00 4.96
7029 7480 1.016627 CCAGTCGCTGAGAGAGAGAG 58.983 60.000 8.20 0.00 32.44 3.20
7034 7485 1.138859 TCGCTGAGAGAGAGAGGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.107410 TGGCGCCAAATCGGAGTTAT 60.107 50.000 30.74 0.00 36.82 1.89
17 18 3.864686 CGACTGGCGCCAAATCGG 61.865 66.667 37.30 26.62 33.59 4.18
18 19 2.387445 TTCGACTGGCGCCAAATCG 61.387 57.895 38.35 38.35 40.61 3.34
111 112 3.659092 TGCGCTTGCTTGGTTCGG 61.659 61.111 9.73 0.00 40.12 4.30
262 268 1.791204 GGGAGACGTGACGAAAAGAAC 59.209 52.381 13.70 0.00 0.00 3.01
269 275 0.675837 ATCTTCGGGAGACGTGACGA 60.676 55.000 13.70 0.00 44.69 4.20
283 289 3.750371 TCTCTCTCTCGGGATCATCTTC 58.250 50.000 0.00 0.00 0.00 2.87
344 350 1.754380 TTATCTGTGGGCCCGATCCG 61.754 60.000 19.37 6.90 0.00 4.18
464 478 1.380280 TGGATAGGGAGGGAGGGAGG 61.380 65.000 0.00 0.00 0.00 4.30
465 479 0.178918 GTGGATAGGGAGGGAGGGAG 60.179 65.000 0.00 0.00 0.00 4.30
466 480 1.675936 GGTGGATAGGGAGGGAGGGA 61.676 65.000 0.00 0.00 0.00 4.20
467 481 1.152008 GGTGGATAGGGAGGGAGGG 60.152 68.421 0.00 0.00 0.00 4.30
595 621 3.052869 AGGGAAGTGGGTGAAGAAGTTTT 60.053 43.478 0.00 0.00 0.00 2.43
1449 1750 2.202756 CTCCCCTGCTTACGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
1656 1957 2.379120 TTTTAGCCTTGCCCTGCCCA 62.379 55.000 0.00 0.00 0.00 5.36
1817 2118 5.245526 ACCTAGGACGATTCACACTAAAACT 59.754 40.000 17.98 0.00 0.00 2.66
1890 2191 0.958091 CAAACCAGGTGCATTTCGGA 59.042 50.000 0.00 0.00 0.00 4.55
1892 2193 2.034558 ACTTCAAACCAGGTGCATTTCG 59.965 45.455 0.00 0.00 0.00 3.46
1909 2210 6.457257 GCACAGTCAGCTACTAGTAGTACTTC 60.457 46.154 26.76 12.70 35.76 3.01
1919 2220 5.677319 ATTTAAGGCACAGTCAGCTACTA 57.323 39.130 0.00 0.00 35.76 1.82
1952 2321 0.600782 AGCAACCGCAAAAATGCAGG 60.601 50.000 0.00 5.99 41.18 4.85
1963 2332 1.010419 CCATTGAGCAAAGCAACCGC 61.010 55.000 0.00 0.00 38.99 5.68
1964 2333 0.314935 ACCATTGAGCAAAGCAACCG 59.685 50.000 0.00 0.00 0.00 4.44
2115 2485 3.181483 CCATTTACTCAGCCCTGATTTGC 60.181 47.826 0.00 0.00 39.13 3.68
2439 2812 9.918630 CATTTTACTCCTTCAATGAGTGAAAAT 57.081 29.630 14.08 12.97 45.46 1.82
2443 2816 6.003326 TGCATTTTACTCCTTCAATGAGTGA 58.997 36.000 5.64 0.00 42.80 3.41
2444 2817 6.258230 TGCATTTTACTCCTTCAATGAGTG 57.742 37.500 5.64 0.00 42.80 3.51
2445 2818 6.265196 TGTTGCATTTTACTCCTTCAATGAGT 59.735 34.615 0.66 0.66 44.85 3.41
2446 2819 6.680810 TGTTGCATTTTACTCCTTCAATGAG 58.319 36.000 0.00 0.00 35.92 2.90
2448 2821 7.712264 TTTGTTGCATTTTACTCCTTCAATG 57.288 32.000 0.00 0.00 0.00 2.82
2450 2823 9.421806 CATATTTGTTGCATTTTACTCCTTCAA 57.578 29.630 0.00 0.00 0.00 2.69
2451 2824 8.801299 TCATATTTGTTGCATTTTACTCCTTCA 58.199 29.630 0.00 0.00 0.00 3.02
2575 2965 2.965572 TGTAGTGGTTGTATACGGCC 57.034 50.000 0.00 0.00 0.00 6.13
2636 3026 0.464452 GCGGCAGGTAGTTACAGGAT 59.536 55.000 0.00 0.00 0.00 3.24
2654 3044 7.333174 GGAGATATGATAAAAAGGCTAGACTGC 59.667 40.741 0.00 0.00 0.00 4.40
2811 3201 8.629158 AGATCTAGATAGAACAACATCACAGAC 58.371 37.037 4.89 0.00 35.69 3.51
2813 3203 7.381948 GCAGATCTAGATAGAACAACATCACAG 59.618 40.741 4.89 0.00 35.69 3.66
3004 3395 9.424319 TCAGATCCAACTTATAATAAATCTCGC 57.576 33.333 0.00 0.00 0.00 5.03
3026 3417 6.325596 CACGAAGAAAGATATCAGTGTCAGA 58.674 40.000 5.32 0.00 0.00 3.27
3249 3640 5.574891 TTAGAGTCTAAGAGCAGAGCAAG 57.425 43.478 8.59 0.00 0.00 4.01
3426 3817 2.158928 AGCCTGCAAAATGCTGTCAAAA 60.159 40.909 3.78 0.00 45.31 2.44
3553 3944 7.998383 AGGGCCAACAAATCTTAAATTTCTTTT 59.002 29.630 6.18 0.00 0.00 2.27
3747 4138 1.168407 TTGCACTCTCTGCCTGCAAC 61.168 55.000 0.24 0.00 46.51 4.17
3902 4293 4.995124 ACGCAGTATCACGAGATTTTAGT 58.005 39.130 0.00 0.00 41.94 2.24
3912 4303 5.450376 AATCAAAGTAACGCAGTATCACG 57.550 39.130 0.00 0.00 45.00 4.35
3963 4354 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
3964 4355 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3965 4356 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3966 4357 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3967 4358 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3968 4359 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
3969 4360 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
3970 4361 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
3995 4386 9.009327 CGTATGTTGTATTCCATTTGAAATGTC 57.991 33.333 15.93 3.21 36.33 3.06
3996 4387 7.973388 CCGTATGTTGTATTCCATTTGAAATGT 59.027 33.333 15.93 1.43 36.33 2.71
3997 4388 8.187480 TCCGTATGTTGTATTCCATTTGAAATG 58.813 33.333 10.84 10.84 36.33 2.32
3998 4389 8.287439 TCCGTATGTTGTATTCCATTTGAAAT 57.713 30.769 0.00 0.00 36.33 2.17
3999 4390 7.689446 TCCGTATGTTGTATTCCATTTGAAA 57.311 32.000 0.00 0.00 36.33 2.69
4000 4391 7.338196 ACATCCGTATGTTGTATTCCATTTGAA 59.662 33.333 0.00 0.00 44.07 2.69
4001 4392 6.826231 ACATCCGTATGTTGTATTCCATTTGA 59.174 34.615 0.00 0.00 44.07 2.69
4002 4393 7.026631 ACATCCGTATGTTGTATTCCATTTG 57.973 36.000 0.00 0.00 44.07 2.32
4003 4394 8.918202 ATACATCCGTATGTTGTATTCCATTT 57.082 30.769 0.00 0.00 44.07 2.32
4004 4395 8.918202 AATACATCCGTATGTTGTATTCCATT 57.082 30.769 0.00 0.00 44.07 3.16
4005 4396 9.653287 CTAATACATCCGTATGTTGTATTCCAT 57.347 33.333 17.32 4.36 44.07 3.41
4006 4397 8.862085 TCTAATACATCCGTATGTTGTATTCCA 58.138 33.333 17.32 8.19 44.07 3.53
4007 4398 9.136952 GTCTAATACATCCGTATGTTGTATTCC 57.863 37.037 17.32 8.65 44.07 3.01
4008 4399 9.687210 TGTCTAATACATCCGTATGTTGTATTC 57.313 33.333 17.32 9.22 44.07 1.75
4044 4435 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4045 4436 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4046 4437 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4047 4438 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4048 4439 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4049 4440 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4050 4441 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4051 4442 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4052 4443 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4053 4444 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4054 4445 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4055 4446 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
4056 4447 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
4057 4448 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
4058 4449 6.183360 CCAAATGACTACATACGGAGCAAAAT 60.183 38.462 0.00 0.00 35.50 1.82
4059 4450 5.123186 CCAAATGACTACATACGGAGCAAAA 59.877 40.000 0.00 0.00 35.50 2.44
4060 4451 4.634004 CCAAATGACTACATACGGAGCAAA 59.366 41.667 0.00 0.00 35.50 3.68
4061 4452 4.188462 CCAAATGACTACATACGGAGCAA 58.812 43.478 0.00 0.00 35.50 3.91
4062 4453 3.196901 ACCAAATGACTACATACGGAGCA 59.803 43.478 0.00 0.00 35.50 4.26
4063 4454 3.555956 CACCAAATGACTACATACGGAGC 59.444 47.826 0.00 0.00 35.50 4.70
4064 4455 4.119862 CCACCAAATGACTACATACGGAG 58.880 47.826 0.00 0.00 35.50 4.63
4065 4456 3.770388 TCCACCAAATGACTACATACGGA 59.230 43.478 0.00 0.00 35.50 4.69
4066 4457 4.131649 TCCACCAAATGACTACATACGG 57.868 45.455 0.00 0.00 35.50 4.02
4067 4458 6.049149 AGATTCCACCAAATGACTACATACG 58.951 40.000 0.00 0.00 35.50 3.06
4068 4459 7.275920 AGAGATTCCACCAAATGACTACATAC 58.724 38.462 0.00 0.00 35.50 2.39
4069 4460 7.437713 AGAGATTCCACCAAATGACTACATA 57.562 36.000 0.00 0.00 35.50 2.29
4070 4461 6.319048 AGAGATTCCACCAAATGACTACAT 57.681 37.500 0.00 0.00 38.50 2.29
4071 4462 5.762179 AGAGATTCCACCAAATGACTACA 57.238 39.130 0.00 0.00 0.00 2.74
4072 4463 7.113658 TCTAGAGATTCCACCAAATGACTAC 57.886 40.000 0.00 0.00 0.00 2.73
4073 4464 7.733773 TTCTAGAGATTCCACCAAATGACTA 57.266 36.000 0.00 0.00 0.00 2.59
4074 4465 6.627087 TTCTAGAGATTCCACCAAATGACT 57.373 37.500 0.00 0.00 0.00 3.41
4075 4466 7.065204 GTCTTTCTAGAGATTCCACCAAATGAC 59.935 40.741 0.00 0.00 0.00 3.06
4076 4467 7.038017 AGTCTTTCTAGAGATTCCACCAAATGA 60.038 37.037 0.00 0.00 0.00 2.57
4077 4468 7.108847 AGTCTTTCTAGAGATTCCACCAAATG 58.891 38.462 0.00 0.00 0.00 2.32
4078 4469 7.264294 AGTCTTTCTAGAGATTCCACCAAAT 57.736 36.000 0.00 0.00 0.00 2.32
4079 4470 6.688073 AGTCTTTCTAGAGATTCCACCAAA 57.312 37.500 0.00 0.00 0.00 3.28
4080 4471 6.688073 AAGTCTTTCTAGAGATTCCACCAA 57.312 37.500 0.00 0.00 0.00 3.67
4081 4472 7.979786 ATAAGTCTTTCTAGAGATTCCACCA 57.020 36.000 0.00 0.00 0.00 4.17
4095 4486 9.508642 CCCTCCATTCCTAAATATAAGTCTTTC 57.491 37.037 0.00 0.00 0.00 2.62
4096 4487 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
4097 4488 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
4098 4489 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
4099 4490 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
4100 4491 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
4101 4492 9.327731 AGTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
4102 4493 9.684702 AAGTACTCCCTCCATTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
4103 4494 9.322769 GAAGTACTCCCTCCATTCCTAAATATA 57.677 37.037 0.00 0.00 0.00 0.86
4104 4495 7.794683 TGAAGTACTCCCTCCATTCCTAAATAT 59.205 37.037 0.00 0.00 0.00 1.28
4105 4496 7.136885 TGAAGTACTCCCTCCATTCCTAAATA 58.863 38.462 0.00 0.00 0.00 1.40
4106 4497 5.970640 TGAAGTACTCCCTCCATTCCTAAAT 59.029 40.000 0.00 0.00 0.00 1.40
4107 4498 5.347124 TGAAGTACTCCCTCCATTCCTAAA 58.653 41.667 0.00 0.00 0.00 1.85
4108 4499 4.955335 TGAAGTACTCCCTCCATTCCTAA 58.045 43.478 0.00 0.00 0.00 2.69
4109 4500 4.016479 ACTGAAGTACTCCCTCCATTCCTA 60.016 45.833 0.00 0.00 0.00 2.94
4110 4501 3.246167 ACTGAAGTACTCCCTCCATTCCT 60.246 47.826 0.00 0.00 0.00 3.36
4111 4502 3.108376 ACTGAAGTACTCCCTCCATTCC 58.892 50.000 0.00 0.00 0.00 3.01
4112 4503 6.487299 AATACTGAAGTACTCCCTCCATTC 57.513 41.667 0.00 0.00 32.72 2.67
4113 4504 6.893020 AAATACTGAAGTACTCCCTCCATT 57.107 37.500 0.00 0.00 32.72 3.16
4114 4505 6.215636 ACAAAATACTGAAGTACTCCCTCCAT 59.784 38.462 0.00 0.00 32.72 3.41
4115 4506 5.546499 ACAAAATACTGAAGTACTCCCTCCA 59.454 40.000 0.00 0.00 32.72 3.86
4116 4507 6.051179 ACAAAATACTGAAGTACTCCCTCC 57.949 41.667 0.00 0.00 32.72 4.30
4117 4508 8.258708 ACATACAAAATACTGAAGTACTCCCTC 58.741 37.037 0.00 0.00 32.72 4.30
4118 4509 8.147244 ACATACAAAATACTGAAGTACTCCCT 57.853 34.615 0.00 0.00 32.72 4.20
4119 4510 8.665685 CAACATACAAAATACTGAAGTACTCCC 58.334 37.037 0.00 0.00 32.72 4.30
4120 4511 8.665685 CCAACATACAAAATACTGAAGTACTCC 58.334 37.037 0.00 0.00 32.72 3.85
4121 4512 8.665685 CCCAACATACAAAATACTGAAGTACTC 58.334 37.037 0.00 0.00 32.72 2.59
4122 4513 8.161425 ACCCAACATACAAAATACTGAAGTACT 58.839 33.333 0.00 0.00 32.72 2.73
4123 4514 8.331730 ACCCAACATACAAAATACTGAAGTAC 57.668 34.615 0.00 0.00 32.72 2.73
4526 4918 8.400947 GCTGAGAAACAAAAATATCATGCTCTA 58.599 33.333 0.00 0.00 0.00 2.43
4737 5136 4.260985 TCACAAGTATGTAATGCCACCAG 58.739 43.478 0.00 0.00 37.82 4.00
4743 5142 6.707608 TCATGGAGATCACAAGTATGTAATGC 59.292 38.462 0.00 0.00 37.82 3.56
4766 5165 5.646360 GTCGGAGTTAAATTCCAAATCCTCA 59.354 40.000 13.96 2.54 37.87 3.86
4772 5171 7.716123 TGTAAGAAGTCGGAGTTAAATTCCAAA 59.284 33.333 0.00 0.00 34.24 3.28
5079 5478 4.508124 CGTCCAATGAACTCTGGTATTAGC 59.492 45.833 0.00 0.00 34.11 3.09
5486 5885 1.475213 GCTTAACCTGAGGAATCGGGG 60.475 57.143 4.99 0.00 40.42 5.73
5495 5895 4.153117 CAGTAAAGTGCAGCTTAACCTGAG 59.847 45.833 1.80 0.00 36.17 3.35
5590 5990 3.572255 GCCTCCAGTAGAATGGTCTCTAG 59.428 52.174 0.00 0.00 41.43 2.43
5658 6058 2.789893 GTCAGAACGTATGCCTCGATTC 59.210 50.000 0.00 0.00 0.00 2.52
5712 6112 1.789464 GCATCTACTCGCTCATTTCCG 59.211 52.381 0.00 0.00 0.00 4.30
5880 6280 6.493458 AGCATGTGACAATAGGGTAACTTTTT 59.507 34.615 0.00 0.00 0.00 1.94
5977 6388 1.068264 TGTGTGAGTTAGAGCAGAGCG 60.068 52.381 0.00 0.00 0.00 5.03
5980 6391 2.876581 TCCTGTGTGAGTTAGAGCAGA 58.123 47.619 0.00 0.00 0.00 4.26
5992 6404 1.798813 GCCTCGTTAGTTTCCTGTGTG 59.201 52.381 0.00 0.00 0.00 3.82
5993 6405 1.692519 AGCCTCGTTAGTTTCCTGTGT 59.307 47.619 0.00 0.00 0.00 3.72
5994 6406 2.457366 AGCCTCGTTAGTTTCCTGTG 57.543 50.000 0.00 0.00 0.00 3.66
5995 6407 3.139077 CAAAGCCTCGTTAGTTTCCTGT 58.861 45.455 0.00 0.00 0.00 4.00
6055 6467 6.588756 TCTGTAAGGTTAATCACAAGCTAACG 59.411 38.462 0.00 0.00 35.26 3.18
6105 6517 0.401738 ATTGACTGGGTGTGAGTGGG 59.598 55.000 0.00 0.00 0.00 4.61
6302 6717 1.276705 GGAGTATAAGCTAGCTGCCCC 59.723 57.143 20.16 10.20 44.23 5.80
6317 6732 4.607239 AGTATTTTCAGACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
6318 6733 3.442076 AGTATTTTCAGACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
6319 6734 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
6320 6735 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6321 6736 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6322 6737 4.566004 TGACAAGTATTTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
6323 6738 5.869344 TGATGACAAGTATTTTCAGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
6324 6739 5.789521 TGATGACAAGTATTTTCAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
6325 6740 6.480524 TTGATGACAAGTATTTTCAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
6326 6741 8.843733 CATTTTGATGACAAGTATTTTCAGACG 58.156 33.333 0.00 0.00 37.32 4.18
6327 6742 9.897744 TCATTTTGATGACAAGTATTTTCAGAC 57.102 29.630 0.00 0.00 37.32 3.51
6337 6752 9.492973 CCCTTTTTATTCATTTTGATGACAAGT 57.507 29.630 0.00 0.00 37.32 3.16
6338 6753 9.709495 TCCCTTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
6340 6755 9.656040 CATCCCTTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
6341 6756 9.657419 ACATCCCTTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 32.39 3.06
6400 6815 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
6401 6816 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
6402 6817 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
6403 6818 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
6404 6819 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
6405 6820 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
6406 6821 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
6407 6822 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
6408 6823 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
6409 6824 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
6410 6825 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
6411 6826 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
6412 6827 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
6413 6828 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
6414 6829 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
6415 6830 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
6416 6831 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
6417 6832 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6418 6833 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6419 6834 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6420 6835 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
6421 6836 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
6422 6837 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
6423 6838 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
6424 6839 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
6425 6840 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
6426 6841 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
6427 6842 0.038744 AACTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
6428 6843 0.679002 CAACTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
6429 6844 0.964358 ACAACTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
6430 6845 1.067071 CAACAACTACTCCCTCCGTCC 60.067 57.143 0.00 0.00 0.00 4.79
6431 6846 1.617357 ACAACAACTACTCCCTCCGTC 59.383 52.381 0.00 0.00 0.00 4.79
6432 6847 1.713297 ACAACAACTACTCCCTCCGT 58.287 50.000 0.00 0.00 0.00 4.69
6433 6848 2.413837 CAACAACAACTACTCCCTCCG 58.586 52.381 0.00 0.00 0.00 4.63
6434 6849 2.779506 CCAACAACAACTACTCCCTCC 58.220 52.381 0.00 0.00 0.00 4.30
6435 6850 2.152016 GCCAACAACAACTACTCCCTC 58.848 52.381 0.00 0.00 0.00 4.30
6436 6851 1.493022 TGCCAACAACAACTACTCCCT 59.507 47.619 0.00 0.00 0.00 4.20
6437 6852 1.975660 TGCCAACAACAACTACTCCC 58.024 50.000 0.00 0.00 0.00 4.30
6438 6853 3.795488 GCTTTGCCAACAACAACTACTCC 60.795 47.826 0.00 0.00 34.87 3.85
6439 6854 3.066760 AGCTTTGCCAACAACAACTACTC 59.933 43.478 0.00 0.00 34.87 2.59
6440 6855 3.023832 AGCTTTGCCAACAACAACTACT 58.976 40.909 0.00 0.00 34.87 2.57
6441 6856 3.115554 CAGCTTTGCCAACAACAACTAC 58.884 45.455 0.00 0.00 34.87 2.73
6460 6875 2.736721 CGAGGTTGATTGGTGTGTACAG 59.263 50.000 0.00 0.00 0.00 2.74
6481 6896 4.318831 GCGCCTGCTTATTATAACTGTGAC 60.319 45.833 0.00 0.00 38.39 3.67
6543 6958 3.568007 GGGATGTTTTTACAGACAGTGCA 59.432 43.478 0.00 0.00 0.00 4.57
6547 6962 3.122948 CGTCGGGATGTTTTTACAGACAG 59.877 47.826 0.00 0.00 0.00 3.51
6558 6976 0.395312 AGGACAAACGTCGGGATGTT 59.605 50.000 0.00 0.51 41.91 2.71
6565 6983 1.654105 GATACTGCAGGACAAACGTCG 59.346 52.381 19.93 0.00 33.96 5.12
6568 6986 1.732259 GTGGATACTGCAGGACAAACG 59.268 52.381 19.93 0.00 37.61 3.60
6586 7004 1.462283 CGACAGGCTTGAACAGATGTG 59.538 52.381 1.40 0.00 0.00 3.21
6608 7026 2.417719 AGAAATCACAGCGTCCAGAAC 58.582 47.619 0.00 0.00 0.00 3.01
6609 7027 2.839486 AGAAATCACAGCGTCCAGAA 57.161 45.000 0.00 0.00 0.00 3.02
6611 7029 2.414481 CTGAAGAAATCACAGCGTCCAG 59.586 50.000 0.00 0.00 33.47 3.86
6612 7030 2.416747 CTGAAGAAATCACAGCGTCCA 58.583 47.619 0.00 0.00 33.47 4.02
6616 7034 3.669023 GCTTTCCTGAAGAAATCACAGCG 60.669 47.826 0.00 0.00 43.50 5.18
6667 7086 8.984764 TCCGTTCCATAATTATAATTCTTGTCG 58.015 33.333 13.95 14.36 0.00 4.35
6698 7117 7.825761 TCATGTGATAGTGATCATCAAAAGTGT 59.174 33.333 0.00 0.00 43.95 3.55
6726 7145 7.835682 ACCTGAAGATTCATGATTCCATAAACA 59.164 33.333 12.82 5.42 36.46 2.83
6763 7182 1.740585 TGTGGTGTGAACCGTTTCTTG 59.259 47.619 0.00 0.00 32.36 3.02
6766 7185 1.063469 CTGTGTGGTGTGAACCGTTTC 59.937 52.381 0.00 0.00 0.00 2.78
6769 7188 0.179084 CTCTGTGTGGTGTGAACCGT 60.179 55.000 0.00 0.00 0.00 4.83
6770 7189 0.880278 CCTCTGTGTGGTGTGAACCG 60.880 60.000 0.00 0.00 0.00 4.44
6772 7191 0.180406 ACCCTCTGTGTGGTGTGAAC 59.820 55.000 0.00 0.00 32.36 3.18
6774 7193 0.398522 AGACCCTCTGTGTGGTGTGA 60.399 55.000 0.00 0.00 34.20 3.58
6775 7194 0.250038 CAGACCCTCTGTGTGGTGTG 60.250 60.000 0.00 0.00 39.58 3.82
6776 7195 0.398522 TCAGACCCTCTGTGTGGTGT 60.399 55.000 0.00 0.00 44.58 4.16
6777 7196 0.758734 TTCAGACCCTCTGTGTGGTG 59.241 55.000 0.00 0.00 44.58 4.17
6778 7197 1.051812 CTTCAGACCCTCTGTGTGGT 58.948 55.000 0.00 0.00 44.58 4.16
6802 7252 0.035881 CAGAAACTGCCCAGCTGAGA 59.964 55.000 17.39 0.00 0.00 3.27
6803 7253 0.035881 TCAGAAACTGCCCAGCTGAG 59.964 55.000 17.39 1.83 32.36 3.35
6804 7254 0.035881 CTCAGAAACTGCCCAGCTGA 59.964 55.000 17.39 0.00 34.71 4.26
6805 7255 0.035881 TCTCAGAAACTGCCCAGCTG 59.964 55.000 6.78 6.78 0.00 4.24
6820 7270 4.561530 CGACATCCACCTTTCTTTCTCTCA 60.562 45.833 0.00 0.00 0.00 3.27
6821 7271 3.929610 CGACATCCACCTTTCTTTCTCTC 59.070 47.826 0.00 0.00 0.00 3.20
6852 7302 4.148825 CGTTAGGAGGCCGCTGCT 62.149 66.667 6.40 0.00 37.74 4.24
6990 7440 1.539124 GTGGGGAGAAGGGTGGAGT 60.539 63.158 0.00 0.00 0.00 3.85
6995 7445 3.882670 TGGGGTGGGGAGAAGGGT 61.883 66.667 0.00 0.00 0.00 4.34
6999 7449 2.606519 CGACTGGGGTGGGGAGAA 60.607 66.667 0.00 0.00 0.00 2.87
7005 7455 2.997315 TCTCAGCGACTGGGGTGG 60.997 66.667 6.85 0.00 36.14 4.61
7006 7456 1.943116 CTCTCTCAGCGACTGGGGTG 61.943 65.000 6.85 2.03 31.91 4.61
7007 7457 1.680651 CTCTCTCAGCGACTGGGGT 60.681 63.158 6.85 0.00 31.91 4.95
7029 7480 1.457009 CGGGAGGGTTCGATCTCTCC 61.457 65.000 27.79 27.79 43.65 3.71
7034 7485 1.143401 GGTTCGGGAGGGTTCGATC 59.857 63.158 0.00 0.00 35.25 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.