Multiple sequence alignment - TraesCS3A01G403100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G403100 chr3A 100.000 5764 0 0 1 5764 648257606 648263369 0.000000e+00 10645.0
1 TraesCS3A01G403100 chr3D 90.922 5651 301 97 1 5573 512670239 512675755 0.000000e+00 7398.0
2 TraesCS3A01G403100 chr3B 94.017 3443 136 35 2164 5573 675044370 675040965 0.000000e+00 5153.0
3 TraesCS3A01G403100 chr3B 90.093 1615 94 40 542 2128 675045949 675044373 0.000000e+00 2036.0
4 TraesCS3A01G403100 chr3B 74.621 528 62 41 1 495 675046591 675046103 3.570000e-37 167.0
5 TraesCS3A01G403100 chr6D 88.000 50 6 0 5329 5378 127138102 127138151 6.240000e-05 60.2
6 TraesCS3A01G403100 chr6B 88.000 50 6 0 5329 5378 226187665 226187714 6.240000e-05 60.2
7 TraesCS3A01G403100 chr6A 94.737 38 2 0 5341 5378 151491463 151491426 6.240000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G403100 chr3A 648257606 648263369 5763 False 10645 10645 100.000000 1 5764 1 chr3A.!!$F1 5763
1 TraesCS3A01G403100 chr3D 512670239 512675755 5516 False 7398 7398 90.922000 1 5573 1 chr3D.!!$F1 5572
2 TraesCS3A01G403100 chr3B 675040965 675046591 5626 True 2452 5153 86.243667 1 5573 3 chr3B.!!$R1 5572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 1106 0.248949 CGCCGTTCTTAGCTACCTCC 60.249 60.000 0.0 0.0 0.00 4.30 F
1163 1380 0.385390 CCCTGACGCTTTGTGCTTTT 59.615 50.000 0.0 0.0 40.11 2.27 F
1164 1381 1.480205 CCTGACGCTTTGTGCTTTTG 58.520 50.000 0.0 0.0 40.11 2.44 F
2459 2680 1.480954 CGGAGGAGCTTTAACTGGCTA 59.519 52.381 0.0 0.0 39.05 3.93 F
3904 4129 0.108520 TACGGGGATCTTGCGACAAC 60.109 55.000 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2320 1.115930 AAGGACAGGCAGTGACTCGT 61.116 55.000 0.00 0.0 0.00 4.18 R
2459 2680 1.269621 GCCGCAAGTCGTGATAGGTAT 60.270 52.381 0.00 0.0 36.19 2.73 R
2655 2877 1.401552 CCCGGCACAAGTGACATAATG 59.598 52.381 6.88 0.0 38.95 1.90 R
4023 4255 1.070758 GAGAAGGTCAGCACTCACCAA 59.929 52.381 0.00 0.0 34.80 3.67 R
5697 5964 0.032615 TTTTGGGTGAACTGGCTGGT 60.033 50.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.866682 TTTCGTTTCAACAATTTTGGCC 57.133 36.364 0.00 0.00 0.00 5.36
64 65 7.610580 TCCTTTTCTGGTTTTCATGGTTTAT 57.389 32.000 0.00 0.00 0.00 1.40
72 87 9.270640 TCTGGTTTTCATGGTTTATTTCATTTG 57.729 29.630 0.00 0.00 0.00 2.32
73 88 8.970859 TGGTTTTCATGGTTTATTTCATTTGT 57.029 26.923 0.00 0.00 0.00 2.83
74 89 9.401058 TGGTTTTCATGGTTTATTTCATTTGTT 57.599 25.926 0.00 0.00 0.00 2.83
75 90 9.877137 GGTTTTCATGGTTTATTTCATTTGTTC 57.123 29.630 0.00 0.00 0.00 3.18
80 95 9.912634 TCATGGTTTATTTCATTTGTTCTCTTC 57.087 29.630 0.00 0.00 0.00 2.87
81 96 9.695526 CATGGTTTATTTCATTTGTTCTCTTCA 57.304 29.630 0.00 0.00 0.00 3.02
443 514 3.896122 ACATGGCAACGTATTTGAACAC 58.104 40.909 0.00 0.00 37.39 3.32
487 559 9.545105 TGCAGTGAATATTTTTCAAAAATCACT 57.455 25.926 18.54 18.54 43.35 3.41
576 756 6.462073 TTCTCAGTTTTTAGAAATCCGTCG 57.538 37.500 0.00 0.00 0.00 5.12
578 758 5.632347 TCTCAGTTTTTAGAAATCCGTCGAC 59.368 40.000 5.18 5.18 0.00 4.20
580 760 5.929992 TCAGTTTTTAGAAATCCGTCGACAT 59.070 36.000 17.16 0.00 0.00 3.06
581 761 6.425721 TCAGTTTTTAGAAATCCGTCGACATT 59.574 34.615 17.16 5.81 0.00 2.71
708 888 4.632538 AAAACAGACAGGAAAACCGAAG 57.367 40.909 0.00 0.00 0.00 3.79
717 897 4.337274 ACAGGAAAACCGAAGAACGAAAAT 59.663 37.500 0.00 0.00 45.77 1.82
720 900 4.318974 GGAAAACCGAAGAACGAAAATCGA 60.319 41.667 6.78 0.00 43.74 3.59
748 951 4.849329 CGGCCCACTACGCTCGTC 62.849 72.222 0.00 0.00 0.00 4.20
760 963 2.202362 CTCGTCGTGTCTCGCCTG 60.202 66.667 0.00 0.00 39.67 4.85
762 965 2.502080 CGTCGTGTCTCGCCTGAC 60.502 66.667 0.00 0.00 39.67 3.51
763 966 2.643272 GTCGTGTCTCGCCTGACA 59.357 61.111 2.74 2.74 43.72 3.58
784 995 2.836187 AACCAACCCTAGCCGCCAA 61.836 57.895 0.00 0.00 0.00 4.52
870 1085 3.775654 CGCTTTCGCCCTCCTCCT 61.776 66.667 0.00 0.00 0.00 3.69
871 1086 2.423898 CGCTTTCGCCCTCCTCCTA 61.424 63.158 0.00 0.00 0.00 2.94
880 1095 1.753463 CCTCCTCCTACGCCGTTCT 60.753 63.158 0.00 0.00 0.00 3.01
881 1096 1.321074 CCTCCTCCTACGCCGTTCTT 61.321 60.000 0.00 0.00 0.00 2.52
885 1100 0.739561 CTCCTACGCCGTTCTTAGCT 59.260 55.000 0.00 0.00 0.00 3.32
886 1101 1.945394 CTCCTACGCCGTTCTTAGCTA 59.055 52.381 0.00 0.00 0.00 3.32
889 1104 1.674962 CTACGCCGTTCTTAGCTACCT 59.325 52.381 0.00 0.00 0.00 3.08
890 1105 0.455005 ACGCCGTTCTTAGCTACCTC 59.545 55.000 0.00 0.00 0.00 3.85
891 1106 0.248949 CGCCGTTCTTAGCTACCTCC 60.249 60.000 0.00 0.00 0.00 4.30
892 1107 1.112950 GCCGTTCTTAGCTACCTCCT 58.887 55.000 0.00 0.00 0.00 3.69
893 1108 1.067364 GCCGTTCTTAGCTACCTCCTC 59.933 57.143 0.00 0.00 0.00 3.71
894 1109 1.682323 CCGTTCTTAGCTACCTCCTCC 59.318 57.143 0.00 0.00 0.00 4.30
895 1110 2.657143 CGTTCTTAGCTACCTCCTCCT 58.343 52.381 0.00 0.00 0.00 3.69
926 1141 1.208844 TCGACCACCTCCTCCTCTCT 61.209 60.000 0.00 0.00 0.00 3.10
935 1150 2.919602 CCTCCTCCTCTCTATCTAGCCT 59.080 54.545 0.00 0.00 0.00 4.58
939 1154 5.416858 TCCTCCTCTCTATCTAGCCTTAGA 58.583 45.833 0.00 0.00 40.10 2.10
1108 1323 1.406477 GGCCTTAAACCCTACACCTCG 60.406 57.143 0.00 0.00 0.00 4.63
1118 1334 2.859273 CTACACCTCGGCCAGCCTTG 62.859 65.000 2.24 1.39 0.00 3.61
1155 1372 1.961277 CTGTTCGCCCTGACGCTTT 60.961 57.895 0.00 0.00 0.00 3.51
1157 1374 2.110213 TTCGCCCTGACGCTTTGT 59.890 55.556 0.00 0.00 0.00 2.83
1158 1375 2.250939 TTCGCCCTGACGCTTTGTG 61.251 57.895 0.00 0.00 0.00 3.33
1159 1376 4.389576 CGCCCTGACGCTTTGTGC 62.390 66.667 0.00 0.00 38.57 4.57
1162 1379 2.032981 CCCTGACGCTTTGTGCTTT 58.967 52.632 0.00 0.00 40.11 3.51
1163 1380 0.385390 CCCTGACGCTTTGTGCTTTT 59.615 50.000 0.00 0.00 40.11 2.27
1164 1381 1.480205 CCTGACGCTTTGTGCTTTTG 58.520 50.000 0.00 0.00 40.11 2.44
1165 1382 1.480205 CTGACGCTTTGTGCTTTTGG 58.520 50.000 0.00 0.00 40.11 3.28
1168 1385 2.267426 GACGCTTTGTGCTTTTGGTTT 58.733 42.857 0.00 0.00 40.11 3.27
1169 1386 2.670905 GACGCTTTGTGCTTTTGGTTTT 59.329 40.909 0.00 0.00 40.11 2.43
1170 1387 2.414825 ACGCTTTGTGCTTTTGGTTTTG 59.585 40.909 0.00 0.00 40.11 2.44
1171 1388 2.670414 CGCTTTGTGCTTTTGGTTTTGA 59.330 40.909 0.00 0.00 40.11 2.69
1172 1389 3.124297 CGCTTTGTGCTTTTGGTTTTGAA 59.876 39.130 0.00 0.00 40.11 2.69
1286 1503 5.365021 TTGTGTGGTTTGGGAAATTGATT 57.635 34.783 0.00 0.00 0.00 2.57
1347 1564 2.028112 TGATTAGCGTTCTCAGGCAGTT 60.028 45.455 0.00 0.00 36.16 3.16
1414 1631 2.741878 CGTTGGGTCTGAACTTCACACT 60.742 50.000 0.00 0.00 0.00 3.55
1517 1735 6.039270 ACGAAATTGGAATTCACTGTCAGAAA 59.961 34.615 6.91 0.85 0.00 2.52
1523 1741 7.111247 TGGAATTCACTGTCAGAAATTTTGT 57.889 32.000 6.91 0.00 0.00 2.83
1534 1752 7.362662 TGTCAGAAATTTTGTCTGCAGTAATC 58.637 34.615 14.67 5.37 41.94 1.75
1673 1891 6.834168 TTGTTTGGTTTAATGGATCTCTCC 57.166 37.500 0.00 0.00 42.45 3.71
1829 2047 7.709947 TCTTGCTTCATTTTATGCTTAGATGG 58.290 34.615 0.00 0.00 0.00 3.51
1861 2080 8.408601 TGGATTATCATAGCTGCTTTTCTTTTC 58.591 33.333 7.79 0.00 0.00 2.29
2015 2234 6.840527 TGGATTATTGATGTCCTGCTCATTA 58.159 36.000 0.00 0.00 33.15 1.90
2057 2276 6.909550 TTATGGTTGTTATCCTGTGCTTTT 57.090 33.333 0.00 0.00 0.00 2.27
2058 2277 8.301002 GTTTATGGTTGTTATCCTGTGCTTTTA 58.699 33.333 0.00 0.00 0.00 1.52
2088 2309 3.782889 AAAGTTGCACAGGAAAGACAC 57.217 42.857 0.00 0.00 0.00 3.67
2130 2351 1.538512 CCTGTCCTTGCATGTTCTGTG 59.461 52.381 0.00 0.00 0.00 3.66
2160 2381 8.883954 ACTATCTGTGATGACATATCAGTTTG 57.116 34.615 14.77 11.47 38.57 2.93
2246 2467 7.173907 CAGCCCAACCAAACTAGATTATCATAG 59.826 40.741 0.00 0.00 0.00 2.23
2459 2680 1.480954 CGGAGGAGCTTTAACTGGCTA 59.519 52.381 0.00 0.00 39.05 3.93
2514 2735 5.982465 TGCTTTTATGAAGGTTTTTGCAC 57.018 34.783 0.00 0.00 0.00 4.57
2515 2736 5.423015 TGCTTTTATGAAGGTTTTTGCACA 58.577 33.333 0.00 0.00 0.00 4.57
2526 2747 6.013842 AGGTTTTTGCACAGCTATACTTTC 57.986 37.500 0.00 0.00 0.00 2.62
2591 2813 9.092876 CTCTTATACTGTTTTCTCATTCCACTC 57.907 37.037 0.00 0.00 0.00 3.51
2744 2966 9.581289 TTATTCATGAGTCTTTTTCCCTTTACA 57.419 29.630 0.00 0.00 0.00 2.41
3019 3242 7.785033 TGAGATTCTGTAGTTTCTGCATCATA 58.215 34.615 0.00 0.00 0.00 2.15
3074 3297 5.942236 TGCTTCTTTGAAGTATGCTCTGATT 59.058 36.000 8.78 0.00 0.00 2.57
3172 3395 4.441792 ACAAAAGAAAACACATGCCTTCC 58.558 39.130 0.00 0.00 0.00 3.46
3191 3414 1.608590 CCAACTGCCATTTCGAGTTGT 59.391 47.619 0.00 0.00 43.33 3.32
3192 3415 2.034558 CCAACTGCCATTTCGAGTTGTT 59.965 45.455 0.00 0.00 43.33 2.83
3421 3644 8.596380 GCATATTCTAATAGCTAAAGCCTAACG 58.404 37.037 0.00 0.00 43.38 3.18
3533 3756 3.160777 GGTATCACCTTACCGAGTGTG 57.839 52.381 0.00 0.00 34.73 3.82
3534 3757 2.494870 GGTATCACCTTACCGAGTGTGT 59.505 50.000 0.00 0.00 34.73 3.72
3540 3763 6.140303 TCACCTTACCGAGTGTGTAATATC 57.860 41.667 0.00 0.00 35.45 1.63
3667 3891 2.502538 TGATGATGATGACAGTGGCAGA 59.497 45.455 4.25 0.00 0.00 4.26
3679 3903 0.606604 GTGGCAGACCGTCCTTTCTA 59.393 55.000 0.00 0.00 39.70 2.10
3863 4088 8.052748 AGGCAGAAGTATGTCATTTGGTTAATA 58.947 33.333 0.00 0.00 0.00 0.98
3881 4106 6.150474 GGTTAATATTGATAATGGGGACGTGG 59.850 42.308 0.00 0.00 0.00 4.94
3898 4123 1.600916 GGCCATACGGGGATCTTGC 60.601 63.158 0.00 0.00 37.04 4.01
3904 4129 0.108520 TACGGGGATCTTGCGACAAC 60.109 55.000 0.00 0.00 0.00 3.32
3997 4228 7.234187 TCTCATGTGCAGTCGTATTAATTTC 57.766 36.000 0.00 0.00 0.00 2.17
4142 4374 5.071788 ACATCAGAACAGGAAAGTGAAGGTA 59.928 40.000 0.00 0.00 0.00 3.08
4252 4484 3.297620 AAGCTTTGCCCACTGCCG 61.298 61.111 0.00 0.00 40.16 5.69
4261 4493 1.227380 CCCACTGCCGAGCTATCAC 60.227 63.158 0.00 0.00 0.00 3.06
4277 4509 2.479566 TCACCCAGCAGATTCAGTTC 57.520 50.000 0.00 0.00 0.00 3.01
4443 4675 8.722480 TGACTAGACAAACTTATCAATGGATG 57.278 34.615 0.00 0.00 34.89 3.51
4547 4779 0.759346 ATGGCATCGAGGACCCTAAC 59.241 55.000 0.00 0.00 0.00 2.34
4700 4935 4.170723 CTCAACTCGAGGAACGCC 57.829 61.111 18.41 0.00 42.26 5.68
4715 4950 1.875488 ACGCCTACAAGGATAAGGGT 58.125 50.000 0.00 0.00 37.67 4.34
4766 5001 2.101783 CAAGCCTGCCAATGGTGAATA 58.898 47.619 0.00 0.00 0.00 1.75
4778 5013 4.657814 ATGGTGAATAGTTGGTTGGTCT 57.342 40.909 0.00 0.00 0.00 3.85
4779 5014 3.750371 TGGTGAATAGTTGGTTGGTCTG 58.250 45.455 0.00 0.00 0.00 3.51
4780 5015 2.488153 GGTGAATAGTTGGTTGGTCTGC 59.512 50.000 0.00 0.00 0.00 4.26
4781 5016 3.412386 GTGAATAGTTGGTTGGTCTGCT 58.588 45.455 0.00 0.00 0.00 4.24
4999 5236 8.123639 AGTACTATACACTTCTTGCTCTTTGA 57.876 34.615 0.00 0.00 0.00 2.69
5032 5269 6.603940 AAAGCAAAACCAAGCCTATATCAA 57.396 33.333 0.00 0.00 0.00 2.57
5035 5272 5.302823 AGCAAAACCAAGCCTATATCAATCC 59.697 40.000 0.00 0.00 0.00 3.01
5036 5273 5.302823 GCAAAACCAAGCCTATATCAATCCT 59.697 40.000 0.00 0.00 0.00 3.24
5062 5301 3.070590 AGGTGTAACTAGTTGCCGTTCTT 59.929 43.478 18.56 2.03 36.74 2.52
5078 5317 3.301906 CGTTCTTGCTAGATCGTGTCTTG 59.698 47.826 17.04 0.00 38.30 3.02
5079 5318 3.510388 TCTTGCTAGATCGTGTCTTGG 57.490 47.619 0.00 0.00 38.42 3.61
5083 5322 2.164422 TGCTAGATCGTGTCTTGGTGAG 59.836 50.000 0.00 0.00 38.42 3.51
5097 5336 4.040829 TCTTGGTGAGACATGACACTTCAT 59.959 41.667 0.00 0.00 43.80 2.57
5098 5337 3.930336 TGGTGAGACATGACACTTCATC 58.070 45.455 0.00 0.00 40.79 2.92
5099 5338 3.580022 TGGTGAGACATGACACTTCATCT 59.420 43.478 0.00 0.00 40.79 2.90
5101 5340 4.391216 GGTGAGACATGACACTTCATCTTG 59.609 45.833 0.00 0.00 40.79 3.02
5102 5341 4.391216 GTGAGACATGACACTTCATCTTGG 59.609 45.833 0.00 0.00 40.79 3.61
5103 5342 4.040829 TGAGACATGACACTTCATCTTGGT 59.959 41.667 0.00 0.00 40.79 3.67
5104 5343 4.978099 AGACATGACACTTCATCTTGGTT 58.022 39.130 0.00 0.00 40.79 3.67
5105 5344 4.999950 AGACATGACACTTCATCTTGGTTC 59.000 41.667 0.00 0.00 40.79 3.62
5107 5346 5.380043 ACATGACACTTCATCTTGGTTCTT 58.620 37.500 0.00 0.00 40.79 2.52
5110 5349 6.135290 TGACACTTCATCTTGGTTCTTTTG 57.865 37.500 0.00 0.00 0.00 2.44
5235 5485 1.734137 GCAGCAGCATCCTTGGATG 59.266 57.895 21.72 21.72 41.58 3.51
5242 5492 1.134159 AGCATCCTTGGATGACTCTGC 60.134 52.381 28.07 15.92 34.66 4.26
5330 5580 2.044793 TGAAGAAGGTCCCCATCTGT 57.955 50.000 0.00 0.00 0.00 3.41
5384 5634 2.404995 GCACAGCAGCTGGATGACC 61.405 63.158 26.38 4.17 36.11 4.02
5399 5649 0.685785 TGACCACCCTGCAAGCAAAA 60.686 50.000 0.00 0.00 0.00 2.44
5401 5651 1.301165 CCACCCTGCAAGCAAAAGC 60.301 57.895 0.00 0.00 0.00 3.51
5404 5657 0.540923 ACCCTGCAAGCAAAAGCAAA 59.459 45.000 0.00 0.00 40.73 3.68
5407 5660 1.595794 CCTGCAAGCAAAAGCAAACAG 59.404 47.619 0.00 0.00 40.73 3.16
5427 5680 1.440708 CAGCAGTCTTTGAGCCTGAG 58.559 55.000 0.00 0.00 0.00 3.35
5450 5713 3.760684 CCTTAGAAGAAAACATGGCTGCT 59.239 43.478 0.00 0.00 0.00 4.24
5465 5728 1.335689 GCTGCTTGCTTCTTCTTGGTG 60.336 52.381 0.00 0.00 38.95 4.17
5468 5731 2.555325 TGCTTGCTTCTTCTTGGTGATG 59.445 45.455 0.00 0.00 0.00 3.07
5469 5732 2.816087 GCTTGCTTCTTCTTGGTGATGA 59.184 45.455 0.00 0.00 0.00 2.92
5557 5824 2.076100 TCCATGATGCACGAGTTGAAC 58.924 47.619 0.00 0.00 0.00 3.18
5577 5844 3.642901 CGTAGGTGGTCTTGGATCG 57.357 57.895 0.00 0.00 0.00 3.69
5578 5845 1.100510 CGTAGGTGGTCTTGGATCGA 58.899 55.000 0.00 0.00 0.00 3.59
5579 5846 1.681793 CGTAGGTGGTCTTGGATCGAT 59.318 52.381 0.00 0.00 0.00 3.59
5580 5847 2.287668 CGTAGGTGGTCTTGGATCGATC 60.288 54.545 17.36 17.36 0.00 3.69
5591 5858 1.017387 GGATCGATCCAGTTGCAACC 58.983 55.000 34.65 9.22 46.38 3.77
5592 5859 1.017387 GATCGATCCAGTTGCAACCC 58.983 55.000 25.62 9.29 0.00 4.11
5593 5860 0.327924 ATCGATCCAGTTGCAACCCA 59.672 50.000 25.62 10.42 0.00 4.51
5594 5861 0.109532 TCGATCCAGTTGCAACCCAA 59.890 50.000 25.62 11.58 0.00 4.12
5602 5869 3.892633 TTGCAACCCAACAGAGACA 57.107 47.368 0.00 0.00 0.00 3.41
5603 5870 2.363306 TTGCAACCCAACAGAGACAT 57.637 45.000 0.00 0.00 0.00 3.06
5604 5871 1.896220 TGCAACCCAACAGAGACATC 58.104 50.000 0.00 0.00 0.00 3.06
5605 5872 1.421268 TGCAACCCAACAGAGACATCT 59.579 47.619 0.00 0.00 35.63 2.90
5606 5873 2.079925 GCAACCCAACAGAGACATCTC 58.920 52.381 0.26 0.26 43.17 2.75
5607 5874 2.550855 GCAACCCAACAGAGACATCTCA 60.551 50.000 11.39 0.00 45.21 3.27
5608 5875 3.332919 CAACCCAACAGAGACATCTCAG 58.667 50.000 11.39 5.76 45.21 3.35
5609 5876 2.614259 ACCCAACAGAGACATCTCAGT 58.386 47.619 11.39 6.40 45.21 3.41
5611 5878 4.160329 ACCCAACAGAGACATCTCAGTTA 58.840 43.478 16.49 0.00 46.45 2.24
5612 5879 4.221703 ACCCAACAGAGACATCTCAGTTAG 59.778 45.833 16.49 13.75 46.45 2.34
5613 5880 4.221703 CCCAACAGAGACATCTCAGTTAGT 59.778 45.833 16.49 3.25 46.45 2.24
5614 5881 5.406649 CCAACAGAGACATCTCAGTTAGTC 58.593 45.833 16.49 0.00 46.45 2.59
5615 5882 5.047731 CCAACAGAGACATCTCAGTTAGTCA 60.048 44.000 16.49 0.00 46.45 3.41
5616 5883 6.350864 CCAACAGAGACATCTCAGTTAGTCAT 60.351 42.308 16.49 0.00 46.45 3.06
5617 5884 6.849085 ACAGAGACATCTCAGTTAGTCATT 57.151 37.500 11.39 0.00 45.21 2.57
5618 5885 7.946381 ACAGAGACATCTCAGTTAGTCATTA 57.054 36.000 11.39 0.00 45.21 1.90
5619 5886 7.995289 ACAGAGACATCTCAGTTAGTCATTAG 58.005 38.462 11.39 0.00 45.21 1.73
5620 5887 7.613801 ACAGAGACATCTCAGTTAGTCATTAGT 59.386 37.037 11.39 0.00 45.21 2.24
5621 5888 9.114952 CAGAGACATCTCAGTTAGTCATTAGTA 57.885 37.037 11.39 0.00 45.21 1.82
5622 5889 9.337396 AGAGACATCTCAGTTAGTCATTAGTAG 57.663 37.037 11.39 0.00 45.21 2.57
5623 5890 8.458573 AGACATCTCAGTTAGTCATTAGTAGG 57.541 38.462 0.00 0.00 33.56 3.18
5624 5891 8.275758 AGACATCTCAGTTAGTCATTAGTAGGA 58.724 37.037 0.00 0.00 33.56 2.94
5625 5892 8.458573 ACATCTCAGTTAGTCATTAGTAGGAG 57.541 38.462 0.00 0.00 0.00 3.69
5626 5893 6.945938 TCTCAGTTAGTCATTAGTAGGAGC 57.054 41.667 0.00 0.00 0.00 4.70
5627 5894 6.424032 TCTCAGTTAGTCATTAGTAGGAGCA 58.576 40.000 0.00 0.00 0.00 4.26
5628 5895 7.063593 TCTCAGTTAGTCATTAGTAGGAGCAT 58.936 38.462 0.00 0.00 0.00 3.79
5629 5896 7.229707 TCTCAGTTAGTCATTAGTAGGAGCATC 59.770 40.741 0.00 0.00 0.00 3.91
5630 5897 6.833933 TCAGTTAGTCATTAGTAGGAGCATCA 59.166 38.462 0.00 0.00 36.25 3.07
5631 5898 7.342026 TCAGTTAGTCATTAGTAGGAGCATCAA 59.658 37.037 0.00 0.00 36.25 2.57
5632 5899 7.981789 CAGTTAGTCATTAGTAGGAGCATCAAA 59.018 37.037 0.00 0.00 36.25 2.69
5633 5900 8.200792 AGTTAGTCATTAGTAGGAGCATCAAAG 58.799 37.037 0.00 0.00 36.25 2.77
5634 5901 6.798427 AGTCATTAGTAGGAGCATCAAAGA 57.202 37.500 0.00 0.00 36.25 2.52
5635 5902 7.187824 AGTCATTAGTAGGAGCATCAAAGAA 57.812 36.000 0.00 0.00 36.25 2.52
5636 5903 7.044798 AGTCATTAGTAGGAGCATCAAAGAAC 58.955 38.462 0.00 0.00 36.25 3.01
5637 5904 7.044798 GTCATTAGTAGGAGCATCAAAGAACT 58.955 38.462 0.00 0.00 36.25 3.01
5638 5905 7.010923 GTCATTAGTAGGAGCATCAAAGAACTG 59.989 40.741 0.00 0.00 36.25 3.16
5639 5906 4.899352 AGTAGGAGCATCAAAGAACTGT 57.101 40.909 0.00 0.00 36.25 3.55
5640 5907 4.826556 AGTAGGAGCATCAAAGAACTGTC 58.173 43.478 0.00 0.00 36.25 3.51
5641 5908 3.064900 AGGAGCATCAAAGAACTGTCC 57.935 47.619 0.00 0.00 36.25 4.02
5642 5909 2.373169 AGGAGCATCAAAGAACTGTCCA 59.627 45.455 0.00 0.00 36.25 4.02
5643 5910 3.009916 AGGAGCATCAAAGAACTGTCCAT 59.990 43.478 0.00 0.00 36.25 3.41
5644 5911 3.128242 GGAGCATCAAAGAACTGTCCATG 59.872 47.826 0.00 0.00 36.25 3.66
5645 5912 2.490903 AGCATCAAAGAACTGTCCATGC 59.509 45.455 0.00 0.00 36.27 4.06
5646 5913 2.416431 GCATCAAAGAACTGTCCATGCC 60.416 50.000 0.00 0.00 30.98 4.40
5647 5914 1.909700 TCAAAGAACTGTCCATGCCC 58.090 50.000 0.00 0.00 0.00 5.36
5648 5915 1.425066 TCAAAGAACTGTCCATGCCCT 59.575 47.619 0.00 0.00 0.00 5.19
5649 5916 1.542915 CAAAGAACTGTCCATGCCCTG 59.457 52.381 0.00 0.00 0.00 4.45
5650 5917 1.067295 AAGAACTGTCCATGCCCTGA 58.933 50.000 0.00 0.00 0.00 3.86
5651 5918 1.293062 AGAACTGTCCATGCCCTGAT 58.707 50.000 0.00 0.00 0.00 2.90
5652 5919 1.064906 AGAACTGTCCATGCCCTGATG 60.065 52.381 0.00 0.00 0.00 3.07
5653 5920 0.682209 AACTGTCCATGCCCTGATGC 60.682 55.000 0.00 0.00 0.00 3.91
5654 5921 1.226542 CTGTCCATGCCCTGATGCT 59.773 57.895 0.00 0.00 0.00 3.79
5655 5922 0.818445 CTGTCCATGCCCTGATGCTC 60.818 60.000 0.00 0.00 0.00 4.26
5656 5923 1.276859 TGTCCATGCCCTGATGCTCT 61.277 55.000 0.00 0.00 0.00 4.09
5657 5924 0.106819 GTCCATGCCCTGATGCTCTT 60.107 55.000 0.00 0.00 0.00 2.85
5658 5925 0.182061 TCCATGCCCTGATGCTCTTC 59.818 55.000 0.00 0.00 0.00 2.87
5659 5926 0.183014 CCATGCCCTGATGCTCTTCT 59.817 55.000 0.00 0.00 0.00 2.85
5660 5927 1.419012 CCATGCCCTGATGCTCTTCTA 59.581 52.381 0.00 0.00 0.00 2.10
5661 5928 2.492012 CATGCCCTGATGCTCTTCTAC 58.508 52.381 0.00 0.00 0.00 2.59
5662 5929 1.871418 TGCCCTGATGCTCTTCTACT 58.129 50.000 0.00 0.00 0.00 2.57
5663 5930 1.483827 TGCCCTGATGCTCTTCTACTG 59.516 52.381 0.00 0.00 0.00 2.74
5664 5931 1.759445 GCCCTGATGCTCTTCTACTGA 59.241 52.381 0.00 0.00 0.00 3.41
5665 5932 2.368221 GCCCTGATGCTCTTCTACTGAT 59.632 50.000 0.00 0.00 0.00 2.90
5666 5933 3.576118 GCCCTGATGCTCTTCTACTGATA 59.424 47.826 0.00 0.00 0.00 2.15
5667 5934 4.560513 GCCCTGATGCTCTTCTACTGATAC 60.561 50.000 0.00 0.00 0.00 2.24
5668 5935 4.586421 CCCTGATGCTCTTCTACTGATACA 59.414 45.833 0.00 0.00 0.00 2.29
5669 5936 5.508825 CCCTGATGCTCTTCTACTGATACAC 60.509 48.000 0.00 0.00 0.00 2.90
5670 5937 5.301551 CCTGATGCTCTTCTACTGATACACT 59.698 44.000 0.00 0.00 0.00 3.55
5671 5938 6.183360 CCTGATGCTCTTCTACTGATACACTT 60.183 42.308 0.00 0.00 0.00 3.16
5672 5939 7.175347 TGATGCTCTTCTACTGATACACTTT 57.825 36.000 0.00 0.00 0.00 2.66
5673 5940 7.615403 TGATGCTCTTCTACTGATACACTTTT 58.385 34.615 0.00 0.00 0.00 2.27
5674 5941 7.547019 TGATGCTCTTCTACTGATACACTTTTG 59.453 37.037 0.00 0.00 0.00 2.44
5675 5942 5.639506 TGCTCTTCTACTGATACACTTTTGC 59.360 40.000 0.00 0.00 0.00 3.68
5676 5943 5.639506 GCTCTTCTACTGATACACTTTTGCA 59.360 40.000 0.00 0.00 0.00 4.08
5677 5944 6.183360 GCTCTTCTACTGATACACTTTTGCAG 60.183 42.308 0.00 0.00 0.00 4.41
5678 5945 6.993079 TCTTCTACTGATACACTTTTGCAGA 58.007 36.000 0.00 0.00 0.00 4.26
5679 5946 7.441836 TCTTCTACTGATACACTTTTGCAGAA 58.558 34.615 0.00 0.00 0.00 3.02
5680 5947 7.600375 TCTTCTACTGATACACTTTTGCAGAAG 59.400 37.037 15.05 15.05 37.62 2.85
5681 5948 6.993079 TCTACTGATACACTTTTGCAGAAGA 58.007 36.000 22.71 1.70 0.00 2.87
5682 5949 7.615403 TCTACTGATACACTTTTGCAGAAGAT 58.385 34.615 22.71 12.62 0.00 2.40
5683 5950 6.492007 ACTGATACACTTTTGCAGAAGATG 57.508 37.500 22.71 17.56 0.00 2.90
5684 5951 6.000219 ACTGATACACTTTTGCAGAAGATGT 59.000 36.000 22.71 21.38 0.00 3.06
5685 5952 7.161404 ACTGATACACTTTTGCAGAAGATGTA 58.839 34.615 22.71 22.51 32.78 2.29
5686 5953 7.332926 ACTGATACACTTTTGCAGAAGATGTAG 59.667 37.037 22.71 16.74 32.29 2.74
5687 5954 7.386059 TGATACACTTTTGCAGAAGATGTAGA 58.614 34.615 22.71 13.62 32.29 2.59
5688 5955 7.877612 TGATACACTTTTGCAGAAGATGTAGAA 59.122 33.333 22.71 14.52 32.29 2.10
5689 5956 8.798859 ATACACTTTTGCAGAAGATGTAGAAT 57.201 30.769 22.71 10.72 32.29 2.40
5690 5957 7.516198 ACACTTTTGCAGAAGATGTAGAATT 57.484 32.000 22.71 0.00 0.00 2.17
5691 5958 7.365741 ACACTTTTGCAGAAGATGTAGAATTG 58.634 34.615 22.71 9.83 29.25 2.32
5692 5959 6.307318 CACTTTTGCAGAAGATGTAGAATTGC 59.693 38.462 22.71 0.00 0.00 3.56
5693 5960 4.604843 TTGCAGAAGATGTAGAATTGCG 57.395 40.909 0.00 0.00 33.03 4.85
5694 5961 2.352651 TGCAGAAGATGTAGAATTGCGC 59.647 45.455 0.00 0.00 33.03 6.09
5695 5962 2.598439 GCAGAAGATGTAGAATTGCGCG 60.598 50.000 0.00 0.00 0.00 6.86
5696 5963 1.594862 AGAAGATGTAGAATTGCGCGC 59.405 47.619 27.26 27.26 0.00 6.86
5697 5964 1.327460 GAAGATGTAGAATTGCGCGCA 59.673 47.619 33.09 33.09 0.00 6.09
5698 5965 0.652592 AGATGTAGAATTGCGCGCAC 59.347 50.000 36.72 23.24 0.00 5.34
5699 5966 0.316196 GATGTAGAATTGCGCGCACC 60.316 55.000 36.72 24.86 0.00 5.01
5700 5967 1.024046 ATGTAGAATTGCGCGCACCA 61.024 50.000 36.72 22.25 0.00 4.17
5701 5968 1.060937 GTAGAATTGCGCGCACCAG 59.939 57.895 36.72 0.00 0.00 4.00
5702 5969 2.749865 TAGAATTGCGCGCACCAGC 61.750 57.895 36.72 22.61 37.42 4.85
5710 5977 4.030452 GCGCACCAGCCAGTTCAC 62.030 66.667 0.30 0.00 37.52 3.18
5711 5978 3.357079 CGCACCAGCCAGTTCACC 61.357 66.667 0.00 0.00 37.52 4.02
5712 5979 2.985847 GCACCAGCCAGTTCACCC 60.986 66.667 0.00 0.00 33.58 4.61
5713 5980 2.515398 CACCAGCCAGTTCACCCA 59.485 61.111 0.00 0.00 0.00 4.51
5714 5981 1.152777 CACCAGCCAGTTCACCCAA 60.153 57.895 0.00 0.00 0.00 4.12
5715 5982 0.754957 CACCAGCCAGTTCACCCAAA 60.755 55.000 0.00 0.00 0.00 3.28
5716 5983 0.032615 ACCAGCCAGTTCACCCAAAA 60.033 50.000 0.00 0.00 0.00 2.44
5717 5984 1.118838 CCAGCCAGTTCACCCAAAAA 58.881 50.000 0.00 0.00 0.00 1.94
5718 5985 1.069049 CCAGCCAGTTCACCCAAAAAG 59.931 52.381 0.00 0.00 0.00 2.27
5719 5986 0.752658 AGCCAGTTCACCCAAAAAGC 59.247 50.000 0.00 0.00 0.00 3.51
5720 5987 0.752658 GCCAGTTCACCCAAAAAGCT 59.247 50.000 0.00 0.00 0.00 3.74
5721 5988 1.269778 GCCAGTTCACCCAAAAAGCTC 60.270 52.381 0.00 0.00 0.00 4.09
5722 5989 2.031120 CCAGTTCACCCAAAAAGCTCA 58.969 47.619 0.00 0.00 0.00 4.26
5723 5990 2.430332 CCAGTTCACCCAAAAAGCTCAA 59.570 45.455 0.00 0.00 0.00 3.02
5724 5991 3.491447 CCAGTTCACCCAAAAAGCTCAAG 60.491 47.826 0.00 0.00 0.00 3.02
5725 5992 2.101415 AGTTCACCCAAAAAGCTCAAGC 59.899 45.455 0.00 0.00 42.49 4.01
5738 6005 3.227810 GCTCAAGCTGATGGGAAAAAG 57.772 47.619 0.00 0.00 38.21 2.27
5739 6006 2.821969 GCTCAAGCTGATGGGAAAAAGA 59.178 45.455 0.00 0.00 38.21 2.52
5740 6007 3.446516 GCTCAAGCTGATGGGAAAAAGAT 59.553 43.478 0.00 0.00 38.21 2.40
5741 6008 4.677250 GCTCAAGCTGATGGGAAAAAGATG 60.677 45.833 0.00 0.00 38.21 2.90
5742 6009 3.765511 TCAAGCTGATGGGAAAAAGATGG 59.234 43.478 0.00 0.00 0.00 3.51
5743 6010 2.743553 AGCTGATGGGAAAAAGATGGG 58.256 47.619 0.00 0.00 0.00 4.00
5744 6011 1.137675 GCTGATGGGAAAAAGATGGGC 59.862 52.381 0.00 0.00 0.00 5.36
5745 6012 2.743553 CTGATGGGAAAAAGATGGGCT 58.256 47.619 0.00 0.00 0.00 5.19
5746 6013 3.902218 CTGATGGGAAAAAGATGGGCTA 58.098 45.455 0.00 0.00 0.00 3.93
5747 6014 4.477249 CTGATGGGAAAAAGATGGGCTAT 58.523 43.478 0.00 0.00 0.00 2.97
5748 6015 4.217510 TGATGGGAAAAAGATGGGCTATG 58.782 43.478 0.00 0.00 0.00 2.23
5749 6016 2.387757 TGGGAAAAAGATGGGCTATGC 58.612 47.619 0.00 0.00 0.00 3.14
5750 6017 2.292126 TGGGAAAAAGATGGGCTATGCA 60.292 45.455 0.00 0.00 0.00 3.96
5751 6018 2.967887 GGGAAAAAGATGGGCTATGCAT 59.032 45.455 3.79 3.79 0.00 3.96
5752 6019 3.389002 GGGAAAAAGATGGGCTATGCATT 59.611 43.478 3.54 0.00 0.00 3.56
5753 6020 4.141642 GGGAAAAAGATGGGCTATGCATTT 60.142 41.667 3.54 0.00 0.00 2.32
5754 6021 5.070313 GGGAAAAAGATGGGCTATGCATTTA 59.930 40.000 3.54 0.00 0.00 1.40
5755 6022 6.239686 GGGAAAAAGATGGGCTATGCATTTAT 60.240 38.462 3.54 0.00 0.00 1.40
5756 6023 6.647895 GGAAAAAGATGGGCTATGCATTTATG 59.352 38.462 3.54 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.160576 TGAAAACCAGAAAAGGAAAGATGG 57.839 37.500 0.00 0.00 0.00 3.51
87 102 9.943163 CAACAAACCAAAGAAAAAGAAAAAGAA 57.057 25.926 0.00 0.00 0.00 2.52
88 103 8.563732 CCAACAAACCAAAGAAAAAGAAAAAGA 58.436 29.630 0.00 0.00 0.00 2.52
89 104 8.349245 ACCAACAAACCAAAGAAAAAGAAAAAG 58.651 29.630 0.00 0.00 0.00 2.27
90 105 8.226819 ACCAACAAACCAAAGAAAAAGAAAAA 57.773 26.923 0.00 0.00 0.00 1.94
91 106 7.809546 ACCAACAAACCAAAGAAAAAGAAAA 57.190 28.000 0.00 0.00 0.00 2.29
176 239 4.553323 CGAAAGGAGTCCGTAGAGAAAAA 58.447 43.478 2.76 0.00 0.00 1.94
178 241 3.844577 CGAAAGGAGTCCGTAGAGAAA 57.155 47.619 2.76 0.00 0.00 2.52
197 260 2.095919 CCAAAGTAACCGAGAAAAGCCG 60.096 50.000 0.00 0.00 0.00 5.52
362 429 9.875675 GTGTTATTGTAAAATGTTAACGGTGTA 57.124 29.630 0.26 0.00 0.00 2.90
414 485 8.420374 TCAAATACGTTGCCATGTTTTAAAAA 57.580 26.923 1.31 0.00 37.13 1.94
419 490 5.233263 GTGTTCAAATACGTTGCCATGTTTT 59.767 36.000 0.00 0.00 37.13 2.43
708 888 2.412089 CCCACTCTGTCGATTTTCGTTC 59.588 50.000 0.00 0.00 41.35 3.95
760 963 0.608308 GGCTAGGGTTGGTTGGTGTC 60.608 60.000 0.00 0.00 0.00 3.67
762 965 1.674322 CGGCTAGGGTTGGTTGGTG 60.674 63.158 0.00 0.00 0.00 4.17
763 966 2.754375 CGGCTAGGGTTGGTTGGT 59.246 61.111 0.00 0.00 0.00 3.67
764 967 2.750237 GCGGCTAGGGTTGGTTGG 60.750 66.667 0.00 0.00 0.00 3.77
765 968 2.750237 GGCGGCTAGGGTTGGTTG 60.750 66.667 0.00 0.00 0.00 3.77
829 1040 3.917760 GACGCCGAGGATGGGGAG 61.918 72.222 3.70 0.00 44.30 4.30
861 1076 2.758737 AACGGCGTAGGAGGAGGG 60.759 66.667 15.20 0.00 0.00 4.30
870 1085 1.672881 GAGGTAGCTAAGAACGGCGTA 59.327 52.381 15.20 0.00 0.00 4.42
871 1086 0.455005 GAGGTAGCTAAGAACGGCGT 59.545 55.000 6.77 6.77 0.00 5.68
880 1095 1.499870 GGAGGAGGAGGAGGTAGCTAA 59.500 57.143 0.00 0.00 0.00 3.09
881 1096 1.150872 GGAGGAGGAGGAGGTAGCTA 58.849 60.000 0.00 0.00 0.00 3.32
885 1100 0.048117 AGGAGGAGGAGGAGGAGGTA 59.952 60.000 0.00 0.00 0.00 3.08
886 1101 1.230819 AGGAGGAGGAGGAGGAGGT 60.231 63.158 0.00 0.00 0.00 3.85
889 1104 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
890 1105 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
891 1106 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
892 1107 1.307953 TCGAGGAGGAGGAGGAGGA 60.308 63.158 0.00 0.00 0.00 3.71
893 1108 1.152839 GTCGAGGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
894 1109 1.152839 GGTCGAGGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
895 1110 1.929088 TGGTCGAGGAGGAGGAGGA 60.929 63.158 0.00 0.00 0.00 3.71
926 1141 1.203013 TGGCGGCTCTAAGGCTAGATA 60.203 52.381 11.43 0.00 38.85 1.98
935 1150 4.473520 GCTGGCTGGCGGCTCTAA 62.474 66.667 25.86 0.86 41.46 2.10
1118 1334 2.509336 CTCACATGGCGTCGGGTC 60.509 66.667 0.00 0.00 0.00 4.46
1155 1372 4.201763 GCGAATTTCAAAACCAAAAGCACA 60.202 37.500 0.00 0.00 0.00 4.57
1157 1374 3.935203 TGCGAATTTCAAAACCAAAAGCA 59.065 34.783 0.00 0.00 0.00 3.91
1158 1375 4.517287 CTGCGAATTTCAAAACCAAAAGC 58.483 39.130 0.00 0.00 0.00 3.51
1159 1376 4.033817 TGCTGCGAATTTCAAAACCAAAAG 59.966 37.500 0.00 0.00 0.00 2.27
1162 1379 2.863137 GTGCTGCGAATTTCAAAACCAA 59.137 40.909 0.00 0.00 0.00 3.67
1163 1380 2.468831 GTGCTGCGAATTTCAAAACCA 58.531 42.857 0.00 0.00 0.00 3.67
1164 1381 1.451651 CGTGCTGCGAATTTCAAAACC 59.548 47.619 0.00 0.00 44.77 3.27
1165 1382 2.816974 CGTGCTGCGAATTTCAAAAC 57.183 45.000 0.00 0.00 44.77 2.43
1213 1430 0.738975 CTCACTTCAGTCCGGCGATA 59.261 55.000 9.30 0.00 0.00 2.92
1223 1440 3.309388 CACGTGGTAGAACTCACTTCAG 58.691 50.000 7.95 0.00 0.00 3.02
1347 1564 5.472478 ACGAACTATCATATCAACTCGCCTA 59.528 40.000 0.00 0.00 0.00 3.93
1414 1631 2.423892 TGCAAAGCTTAACCGAAACACA 59.576 40.909 0.00 0.00 0.00 3.72
1497 1715 8.206189 ACAAAATTTCTGACAGTGAATTCCAAT 58.794 29.630 15.12 3.33 0.00 3.16
1517 1735 7.611467 TGGACATTAGATTACTGCAGACAAAAT 59.389 33.333 23.35 13.62 0.00 1.82
1523 1741 5.664457 CAGTGGACATTAGATTACTGCAGA 58.336 41.667 23.35 0.00 30.59 4.26
1534 1752 5.375417 TTTCAACATGCAGTGGACATTAG 57.625 39.130 0.00 0.00 27.00 1.73
1548 1766 2.806244 CGGACCTCGACTTTTTCAACAT 59.194 45.455 0.00 0.00 42.43 2.71
1575 1793 5.370679 AGAACCTAAGTTGTTTTAAGCCGA 58.629 37.500 0.00 0.00 35.94 5.54
1664 1882 3.637229 TCACCAAGATAACGGAGAGATCC 59.363 47.826 0.00 0.00 0.00 3.36
1672 1890 9.706691 ATTATAATACACTCACCAAGATAACGG 57.293 33.333 0.00 0.00 0.00 4.44
1829 2047 8.961294 AAAGCAGCTATGATAATCCAGATATC 57.039 34.615 0.00 0.00 0.00 1.63
1861 2080 5.470098 CCGAAACCCATCATCTATAACCAAG 59.530 44.000 0.00 0.00 0.00 3.61
2079 2300 4.748102 TCGTATGTTTCACAGTGTCTTTCC 59.252 41.667 0.00 0.00 0.00 3.13
2088 2309 3.121944 GCAGTGACTCGTATGTTTCACAG 59.878 47.826 16.16 11.46 40.75 3.66
2099 2320 1.115930 AAGGACAGGCAGTGACTCGT 61.116 55.000 0.00 0.00 0.00 4.18
2160 2381 7.436376 AGCTGTTCTTTTTCTTAATCAAGTTGC 59.564 33.333 0.00 0.00 33.20 4.17
2459 2680 1.269621 GCCGCAAGTCGTGATAGGTAT 60.270 52.381 0.00 0.00 36.19 2.73
2526 2747 8.218338 AGCAGTTAGACAGATAAAATGAATGG 57.782 34.615 0.00 0.00 0.00 3.16
2591 2813 2.555199 CATGGTCTCCTAAAGCCTTCG 58.445 52.381 0.00 0.00 0.00 3.79
2655 2877 1.401552 CCCGGCACAAGTGACATAATG 59.598 52.381 6.88 0.00 38.95 1.90
2744 2966 3.306364 GCAACACCTATGTCAGTCTCTGT 60.306 47.826 0.00 0.00 38.45 3.41
2941 3163 3.126001 ACGAAGAATGGACAAGCTGAA 57.874 42.857 0.00 0.00 0.00 3.02
3074 3297 3.699038 CTGAAACCTCCAAAACCACTGAA 59.301 43.478 0.00 0.00 0.00 3.02
3126 3349 8.801299 TGTACAATTGGCAAATCTTGATAAAGA 58.199 29.630 16.57 0.00 0.00 2.52
3145 3368 6.581712 AGGCATGTGTTTTCTTTTGTACAAT 58.418 32.000 9.56 0.00 0.00 2.71
3146 3369 5.971763 AGGCATGTGTTTTCTTTTGTACAA 58.028 33.333 3.59 3.59 0.00 2.41
3421 3644 2.224402 ACTGAACAGAAAGCAGTCCTCC 60.224 50.000 8.87 0.00 38.41 4.30
3667 3891 4.837093 TTGAATGGATAGAAAGGACGGT 57.163 40.909 0.00 0.00 0.00 4.83
3679 3903 4.219288 GCACCAGAAGACTTTTGAATGGAT 59.781 41.667 7.29 0.00 0.00 3.41
3863 4088 1.478654 GGCCACGTCCCCATTATCAAT 60.479 52.381 0.00 0.00 0.00 2.57
3881 4106 1.961277 CGCAAGATCCCCGTATGGC 60.961 63.158 0.00 0.00 43.02 4.40
3898 4123 2.108700 CCTTCAAAAAGTGCGTTGTCG 58.891 47.619 0.00 0.00 40.37 4.35
3904 4129 4.047822 TGTTATTGCCTTCAAAAAGTGCG 58.952 39.130 0.00 0.00 35.56 5.34
3959 4190 3.688185 CACATGAGAAGGAACACTCCATG 59.312 47.826 0.00 0.00 45.24 3.66
4011 4243 7.170658 GTCAGCACTCACCAAGATCTAATTATC 59.829 40.741 0.00 0.00 0.00 1.75
4023 4255 1.070758 GAGAAGGTCAGCACTCACCAA 59.929 52.381 0.00 0.00 34.80 3.67
4142 4374 4.074526 AGCAGACACGGCATCGCT 62.075 61.111 0.00 0.00 40.63 4.93
4222 4454 1.788308 CAAAGCTTGGCGACACATTTG 59.212 47.619 0.00 0.00 42.67 2.32
4252 4484 2.103771 TGAATCTGCTGGGTGATAGCTC 59.896 50.000 0.00 0.00 41.66 4.09
4261 4493 2.235650 TGAGAGAACTGAATCTGCTGGG 59.764 50.000 0.00 0.00 0.00 4.45
4410 4642 5.854010 AAGTTTGTCTAGTCAGTCAGTCA 57.146 39.130 0.00 0.00 0.00 3.41
4411 4643 7.594714 TGATAAGTTTGTCTAGTCAGTCAGTC 58.405 38.462 0.00 0.00 0.00 3.51
4412 4644 7.526142 TGATAAGTTTGTCTAGTCAGTCAGT 57.474 36.000 0.00 0.00 0.00 3.41
4413 4645 8.867935 CATTGATAAGTTTGTCTAGTCAGTCAG 58.132 37.037 0.00 0.00 0.00 3.51
4443 4675 4.568760 GGTAGATCAGCAGAAGTAAGCAAC 59.431 45.833 0.00 0.00 0.00 4.17
4547 4779 2.419198 CCTCCTGATTCGGCTCCG 59.581 66.667 1.14 1.14 41.35 4.63
4604 4839 1.565156 TTGTCAGCAATGCGTCGTCC 61.565 55.000 0.00 0.00 0.00 4.79
4643 4878 1.607467 AGCTGCCATCGCCCTTTTT 60.607 52.632 0.00 0.00 0.00 1.94
4700 4935 3.714798 TGCCCTTACCCTTATCCTTGTAG 59.285 47.826 0.00 0.00 0.00 2.74
4715 4950 1.367346 TGGAGTTCATGGTGCCCTTA 58.633 50.000 0.00 0.00 0.00 2.69
4766 5001 2.143876 ACAAAGCAGACCAACCAACT 57.856 45.000 0.00 0.00 0.00 3.16
4778 5013 1.133823 TCTCCAGCCAGAAACAAAGCA 60.134 47.619 0.00 0.00 0.00 3.91
4779 5014 1.609208 TCTCCAGCCAGAAACAAAGC 58.391 50.000 0.00 0.00 0.00 3.51
4780 5015 3.683802 AGATCTCCAGCCAGAAACAAAG 58.316 45.455 0.00 0.00 0.00 2.77
4781 5016 3.072915 TGAGATCTCCAGCCAGAAACAAA 59.927 43.478 20.03 0.00 0.00 2.83
4999 5236 6.040247 GCTTGGTTTTGCTTTAGTAAACTGT 58.960 36.000 0.00 0.00 33.44 3.55
5032 5269 4.160626 GCAACTAGTTACACCTCAGAGGAT 59.839 45.833 24.45 12.89 37.67 3.24
5035 5272 3.673594 CGGCAACTAGTTACACCTCAGAG 60.674 52.174 8.04 0.00 0.00 3.35
5036 5273 2.230508 CGGCAACTAGTTACACCTCAGA 59.769 50.000 8.04 0.00 0.00 3.27
5062 5301 2.164422 CTCACCAAGACACGATCTAGCA 59.836 50.000 0.00 0.00 36.27 3.49
5078 5317 4.199432 AGATGAAGTGTCATGTCTCACC 57.801 45.455 12.14 3.09 44.83 4.02
5079 5318 4.391216 CCAAGATGAAGTGTCATGTCTCAC 59.609 45.833 9.23 9.23 44.83 3.51
5083 5322 4.999950 AGAACCAAGATGAAGTGTCATGTC 59.000 41.667 0.00 0.00 44.83 3.06
5097 5336 3.394606 AGGTAGCTCCAAAAGAACCAAGA 59.605 43.478 0.00 0.00 35.84 3.02
5098 5337 3.756117 AGGTAGCTCCAAAAGAACCAAG 58.244 45.455 0.00 0.00 35.84 3.61
5099 5338 3.876309 AGGTAGCTCCAAAAGAACCAA 57.124 42.857 0.00 0.00 35.84 3.67
5101 5340 2.820197 CCAAGGTAGCTCCAAAAGAACC 59.180 50.000 0.00 0.00 39.02 3.62
5102 5341 2.229062 GCCAAGGTAGCTCCAAAAGAAC 59.771 50.000 0.00 0.00 39.02 3.01
5103 5342 2.158534 TGCCAAGGTAGCTCCAAAAGAA 60.159 45.455 0.00 0.00 39.02 2.52
5104 5343 1.423541 TGCCAAGGTAGCTCCAAAAGA 59.576 47.619 0.00 0.00 39.02 2.52
5105 5344 1.815003 CTGCCAAGGTAGCTCCAAAAG 59.185 52.381 0.00 0.00 39.02 2.27
5107 5346 3.650647 CTGCCAAGGTAGCTCCAAA 57.349 52.632 0.00 0.00 39.02 3.28
5235 5485 1.828768 CCAGGATGAGGGCAGAGTC 59.171 63.158 0.00 0.00 39.69 3.36
5242 5492 1.530771 CAGAAGGCCAGGATGAGGG 59.469 63.158 5.01 0.00 39.69 4.30
5384 5634 4.348857 GCTTTTGCTTGCAGGGTG 57.651 55.556 0.00 0.00 43.35 4.61
5399 5649 1.066605 CAAAGACTGCTGCTGTTTGCT 59.933 47.619 13.49 3.82 43.37 3.91
5401 5651 2.857489 GCTCAAAGACTGCTGCTGTTTG 60.857 50.000 13.49 13.97 0.00 2.93
5404 5657 0.888285 GGCTCAAAGACTGCTGCTGT 60.888 55.000 12.15 12.15 0.00 4.40
5407 5660 1.874562 CAGGCTCAAAGACTGCTGC 59.125 57.895 0.00 0.00 45.62 5.25
5412 5665 1.063183 AAGGCTCAGGCTCAAAGACT 58.937 50.000 0.00 0.00 37.50 3.24
5427 5680 3.674410 GCAGCCATGTTTTCTTCTAAGGC 60.674 47.826 0.00 0.00 41.08 4.35
5450 5713 4.040829 TCTCTCATCACCAAGAAGAAGCAA 59.959 41.667 0.00 0.00 0.00 3.91
5465 5728 3.849145 CGTCGTTTCACTCTTCTCTCATC 59.151 47.826 0.00 0.00 0.00 2.92
5468 5731 2.225963 TCCGTCGTTTCACTCTTCTCTC 59.774 50.000 0.00 0.00 0.00 3.20
5469 5732 2.228059 TCCGTCGTTTCACTCTTCTCT 58.772 47.619 0.00 0.00 0.00 3.10
5557 5824 0.464452 GATCCAAGACCACCTACGGG 59.536 60.000 0.00 0.00 38.88 5.28
5573 5840 1.017387 GGGTTGCAACTGGATCGATC 58.983 55.000 27.64 17.36 0.00 3.69
5574 5841 0.327924 TGGGTTGCAACTGGATCGAT 59.672 50.000 27.64 0.00 0.00 3.59
5575 5842 0.109532 TTGGGTTGCAACTGGATCGA 59.890 50.000 27.64 6.47 0.00 3.59
5576 5843 0.240945 GTTGGGTTGCAACTGGATCG 59.759 55.000 27.64 0.00 0.00 3.69
5577 5844 1.270550 CTGTTGGGTTGCAACTGGATC 59.729 52.381 27.64 11.52 33.97 3.36
5578 5845 1.133513 TCTGTTGGGTTGCAACTGGAT 60.134 47.619 27.64 0.00 33.95 3.41
5579 5846 0.257328 TCTGTTGGGTTGCAACTGGA 59.743 50.000 27.64 11.69 33.95 3.86
5580 5847 0.670162 CTCTGTTGGGTTGCAACTGG 59.330 55.000 27.64 12.11 33.95 4.00
5581 5848 1.334869 GTCTCTGTTGGGTTGCAACTG 59.665 52.381 27.64 7.72 33.97 3.16
5582 5849 1.064758 TGTCTCTGTTGGGTTGCAACT 60.065 47.619 27.64 0.00 33.97 3.16
5583 5850 1.388547 TGTCTCTGTTGGGTTGCAAC 58.611 50.000 21.59 21.59 0.00 4.17
5584 5851 2.158623 AGATGTCTCTGTTGGGTTGCAA 60.159 45.455 0.00 0.00 0.00 4.08
5585 5852 1.421268 AGATGTCTCTGTTGGGTTGCA 59.579 47.619 0.00 0.00 0.00 4.08
5586 5853 2.079925 GAGATGTCTCTGTTGGGTTGC 58.920 52.381 2.80 0.00 39.81 4.17
5587 5854 3.332919 CTGAGATGTCTCTGTTGGGTTG 58.667 50.000 11.03 0.00 43.25 3.77
5588 5855 3.692257 CTGAGATGTCTCTGTTGGGTT 57.308 47.619 11.03 0.00 43.25 4.11
5595 5862 7.995289 ACTAATGACTAACTGAGATGTCTCTG 58.005 38.462 13.35 13.35 43.25 3.35
5596 5863 9.337396 CTACTAATGACTAACTGAGATGTCTCT 57.663 37.037 11.03 0.00 43.25 3.10
5597 5864 8.564574 CCTACTAATGACTAACTGAGATGTCTC 58.435 40.741 3.07 3.07 43.15 3.36
5598 5865 8.275758 TCCTACTAATGACTAACTGAGATGTCT 58.724 37.037 0.00 0.00 0.00 3.41
5599 5866 8.453238 TCCTACTAATGACTAACTGAGATGTC 57.547 38.462 0.00 0.00 0.00 3.06
5600 5867 7.013846 GCTCCTACTAATGACTAACTGAGATGT 59.986 40.741 0.00 0.00 0.00 3.06
5601 5868 7.013750 TGCTCCTACTAATGACTAACTGAGATG 59.986 40.741 0.00 0.00 0.00 2.90
5602 5869 7.063593 TGCTCCTACTAATGACTAACTGAGAT 58.936 38.462 0.00 0.00 0.00 2.75
5603 5870 6.424032 TGCTCCTACTAATGACTAACTGAGA 58.576 40.000 0.00 0.00 0.00 3.27
5604 5871 6.701145 TGCTCCTACTAATGACTAACTGAG 57.299 41.667 0.00 0.00 0.00 3.35
5605 5872 6.833933 TGATGCTCCTACTAATGACTAACTGA 59.166 38.462 0.00 0.00 0.00 3.41
5606 5873 7.043961 TGATGCTCCTACTAATGACTAACTG 57.956 40.000 0.00 0.00 0.00 3.16
5607 5874 7.661536 TTGATGCTCCTACTAATGACTAACT 57.338 36.000 0.00 0.00 0.00 2.24
5608 5875 8.198109 TCTTTGATGCTCCTACTAATGACTAAC 58.802 37.037 0.00 0.00 0.00 2.34
5609 5876 8.306313 TCTTTGATGCTCCTACTAATGACTAA 57.694 34.615 0.00 0.00 0.00 2.24
5610 5877 7.898014 TCTTTGATGCTCCTACTAATGACTA 57.102 36.000 0.00 0.00 0.00 2.59
5611 5878 6.798427 TCTTTGATGCTCCTACTAATGACT 57.202 37.500 0.00 0.00 0.00 3.41
5612 5879 7.010923 CAGTTCTTTGATGCTCCTACTAATGAC 59.989 40.741 0.00 0.00 0.00 3.06
5613 5880 7.044181 CAGTTCTTTGATGCTCCTACTAATGA 58.956 38.462 0.00 0.00 0.00 2.57
5614 5881 6.820656 ACAGTTCTTTGATGCTCCTACTAATG 59.179 38.462 0.00 0.00 0.00 1.90
5615 5882 6.951971 ACAGTTCTTTGATGCTCCTACTAAT 58.048 36.000 0.00 0.00 0.00 1.73
5616 5883 6.360370 ACAGTTCTTTGATGCTCCTACTAA 57.640 37.500 0.00 0.00 0.00 2.24
5617 5884 5.105310 GGACAGTTCTTTGATGCTCCTACTA 60.105 44.000 0.00 0.00 0.00 1.82
5618 5885 4.323104 GGACAGTTCTTTGATGCTCCTACT 60.323 45.833 0.00 0.00 0.00 2.57
5619 5886 3.935828 GGACAGTTCTTTGATGCTCCTAC 59.064 47.826 0.00 0.00 0.00 3.18
5620 5887 3.582647 TGGACAGTTCTTTGATGCTCCTA 59.417 43.478 0.00 0.00 0.00 2.94
5621 5888 2.373169 TGGACAGTTCTTTGATGCTCCT 59.627 45.455 0.00 0.00 0.00 3.69
5622 5889 2.783135 TGGACAGTTCTTTGATGCTCC 58.217 47.619 0.00 0.00 0.00 4.70
5623 5890 3.427233 GCATGGACAGTTCTTTGATGCTC 60.427 47.826 0.00 0.00 33.51 4.26
5624 5891 2.490903 GCATGGACAGTTCTTTGATGCT 59.509 45.455 0.00 0.00 33.51 3.79
5625 5892 2.416431 GGCATGGACAGTTCTTTGATGC 60.416 50.000 0.00 0.00 35.14 3.91
5626 5893 2.165030 GGGCATGGACAGTTCTTTGATG 59.835 50.000 0.00 0.00 0.00 3.07
5627 5894 2.042162 AGGGCATGGACAGTTCTTTGAT 59.958 45.455 0.00 0.00 0.00 2.57
5628 5895 1.425066 AGGGCATGGACAGTTCTTTGA 59.575 47.619 0.00 0.00 0.00 2.69
5629 5896 1.542915 CAGGGCATGGACAGTTCTTTG 59.457 52.381 0.00 0.00 0.00 2.77
5630 5897 1.425066 TCAGGGCATGGACAGTTCTTT 59.575 47.619 0.00 0.00 0.00 2.52
5631 5898 1.067295 TCAGGGCATGGACAGTTCTT 58.933 50.000 0.00 0.00 0.00 2.52
5632 5899 1.064906 CATCAGGGCATGGACAGTTCT 60.065 52.381 0.00 0.00 0.00 3.01
5633 5900 1.386533 CATCAGGGCATGGACAGTTC 58.613 55.000 0.00 0.00 0.00 3.01
5634 5901 0.682209 GCATCAGGGCATGGACAGTT 60.682 55.000 0.00 0.00 0.00 3.16
5635 5902 1.077212 GCATCAGGGCATGGACAGT 60.077 57.895 0.00 0.00 0.00 3.55
5636 5903 0.818445 GAGCATCAGGGCATGGACAG 60.818 60.000 0.00 0.00 35.83 3.51
5637 5904 1.225426 GAGCATCAGGGCATGGACA 59.775 57.895 0.00 0.00 35.83 4.02
5638 5905 0.106819 AAGAGCATCAGGGCATGGAC 60.107 55.000 0.00 0.00 37.82 4.02
5639 5906 0.182061 GAAGAGCATCAGGGCATGGA 59.818 55.000 0.00 0.00 37.82 3.41
5640 5907 0.183014 AGAAGAGCATCAGGGCATGG 59.817 55.000 0.00 0.00 37.82 3.66
5641 5908 2.104451 AGTAGAAGAGCATCAGGGCATG 59.896 50.000 0.00 0.00 37.82 4.06
5642 5909 2.104451 CAGTAGAAGAGCATCAGGGCAT 59.896 50.000 0.00 0.00 37.82 4.40
5643 5910 1.483827 CAGTAGAAGAGCATCAGGGCA 59.516 52.381 0.00 0.00 37.82 5.36
5644 5911 1.759445 TCAGTAGAAGAGCATCAGGGC 59.241 52.381 0.00 0.00 37.82 5.19
5645 5912 4.586421 TGTATCAGTAGAAGAGCATCAGGG 59.414 45.833 0.00 0.00 37.82 4.45
5646 5913 5.301551 AGTGTATCAGTAGAAGAGCATCAGG 59.698 44.000 0.00 0.00 37.82 3.86
5647 5914 6.389830 AGTGTATCAGTAGAAGAGCATCAG 57.610 41.667 0.00 0.00 37.82 2.90
5648 5915 6.782082 AAGTGTATCAGTAGAAGAGCATCA 57.218 37.500 0.00 0.00 37.82 3.07
5649 5916 7.465245 GCAAAAGTGTATCAGTAGAAGAGCATC 60.465 40.741 0.00 0.00 0.00 3.91
5650 5917 6.314896 GCAAAAGTGTATCAGTAGAAGAGCAT 59.685 38.462 0.00 0.00 0.00 3.79
5651 5918 5.639506 GCAAAAGTGTATCAGTAGAAGAGCA 59.360 40.000 0.00 0.00 0.00 4.26
5652 5919 5.639506 TGCAAAAGTGTATCAGTAGAAGAGC 59.360 40.000 0.00 0.00 0.00 4.09
5653 5920 7.093354 TCTGCAAAAGTGTATCAGTAGAAGAG 58.907 38.462 0.00 0.00 0.00 2.85
5654 5921 6.993079 TCTGCAAAAGTGTATCAGTAGAAGA 58.007 36.000 0.00 0.00 0.00 2.87
5655 5922 7.600375 TCTTCTGCAAAAGTGTATCAGTAGAAG 59.400 37.037 0.00 10.48 38.96 2.85
5656 5923 7.441836 TCTTCTGCAAAAGTGTATCAGTAGAA 58.558 34.615 0.00 0.00 31.44 2.10
5657 5924 6.993079 TCTTCTGCAAAAGTGTATCAGTAGA 58.007 36.000 0.00 0.00 31.75 2.59
5658 5925 7.332926 ACATCTTCTGCAAAAGTGTATCAGTAG 59.667 37.037 0.00 0.00 0.00 2.57
5659 5926 7.161404 ACATCTTCTGCAAAAGTGTATCAGTA 58.839 34.615 0.00 0.00 0.00 2.74
5660 5927 6.000219 ACATCTTCTGCAAAAGTGTATCAGT 59.000 36.000 0.00 0.00 0.00 3.41
5661 5928 6.492007 ACATCTTCTGCAAAAGTGTATCAG 57.508 37.500 0.00 0.00 0.00 2.90
5662 5929 7.386059 TCTACATCTTCTGCAAAAGTGTATCA 58.614 34.615 12.52 4.30 30.11 2.15
5663 5930 7.834068 TCTACATCTTCTGCAAAAGTGTATC 57.166 36.000 12.52 0.00 30.11 2.24
5664 5931 8.798859 ATTCTACATCTTCTGCAAAAGTGTAT 57.201 30.769 12.52 1.87 30.11 2.29
5665 5932 8.506437 CAATTCTACATCTTCTGCAAAAGTGTA 58.494 33.333 11.91 11.91 0.00 2.90
5666 5933 7.365741 CAATTCTACATCTTCTGCAAAAGTGT 58.634 34.615 11.14 11.14 0.00 3.55
5667 5934 6.307318 GCAATTCTACATCTTCTGCAAAAGTG 59.693 38.462 0.00 0.71 0.00 3.16
5668 5935 6.385033 GCAATTCTACATCTTCTGCAAAAGT 58.615 36.000 0.00 0.00 0.00 2.66
5669 5936 5.510674 CGCAATTCTACATCTTCTGCAAAAG 59.489 40.000 0.00 0.00 0.00 2.27
5670 5937 5.393124 CGCAATTCTACATCTTCTGCAAAA 58.607 37.500 0.00 0.00 0.00 2.44
5671 5938 4.672542 GCGCAATTCTACATCTTCTGCAAA 60.673 41.667 0.30 0.00 0.00 3.68
5672 5939 3.181507 GCGCAATTCTACATCTTCTGCAA 60.182 43.478 0.30 0.00 0.00 4.08
5673 5940 2.352651 GCGCAATTCTACATCTTCTGCA 59.647 45.455 0.30 0.00 0.00 4.41
5674 5941 2.598439 CGCGCAATTCTACATCTTCTGC 60.598 50.000 8.75 0.00 0.00 4.26
5675 5942 2.598439 GCGCGCAATTCTACATCTTCTG 60.598 50.000 29.10 0.00 0.00 3.02
5676 5943 1.594862 GCGCGCAATTCTACATCTTCT 59.405 47.619 29.10 0.00 0.00 2.85
5677 5944 1.327460 TGCGCGCAATTCTACATCTTC 59.673 47.619 34.66 0.00 0.00 2.87
5678 5945 1.062587 GTGCGCGCAATTCTACATCTT 59.937 47.619 38.24 0.00 0.00 2.40
5679 5946 0.652592 GTGCGCGCAATTCTACATCT 59.347 50.000 38.24 0.00 0.00 2.90
5680 5947 0.316196 GGTGCGCGCAATTCTACATC 60.316 55.000 38.24 19.74 0.00 3.06
5681 5948 1.024046 TGGTGCGCGCAATTCTACAT 61.024 50.000 38.24 0.00 0.00 2.29
5682 5949 1.634757 CTGGTGCGCGCAATTCTACA 61.635 55.000 38.24 24.07 0.00 2.74
5683 5950 1.060937 CTGGTGCGCGCAATTCTAC 59.939 57.895 38.24 22.17 0.00 2.59
5684 5951 2.749865 GCTGGTGCGCGCAATTCTA 61.750 57.895 38.24 20.64 0.00 2.10
5685 5952 4.107051 GCTGGTGCGCGCAATTCT 62.107 61.111 38.24 0.00 0.00 2.40
5693 5960 4.030452 GTGAACTGGCTGGTGCGC 62.030 66.667 0.00 0.00 40.82 6.09
5694 5961 3.357079 GGTGAACTGGCTGGTGCG 61.357 66.667 0.00 0.00 40.82 5.34
5695 5962 2.985847 GGGTGAACTGGCTGGTGC 60.986 66.667 0.00 0.00 38.76 5.01
5696 5963 0.754957 TTTGGGTGAACTGGCTGGTG 60.755 55.000 0.00 0.00 0.00 4.17
5697 5964 0.032615 TTTTGGGTGAACTGGCTGGT 60.033 50.000 0.00 0.00 0.00 4.00
5698 5965 1.069049 CTTTTTGGGTGAACTGGCTGG 59.931 52.381 0.00 0.00 0.00 4.85
5699 5966 1.538849 GCTTTTTGGGTGAACTGGCTG 60.539 52.381 0.00 0.00 0.00 4.85
5700 5967 0.752658 GCTTTTTGGGTGAACTGGCT 59.247 50.000 0.00 0.00 0.00 4.75
5701 5968 0.752658 AGCTTTTTGGGTGAACTGGC 59.247 50.000 0.00 0.00 0.00 4.85
5702 5969 2.031120 TGAGCTTTTTGGGTGAACTGG 58.969 47.619 0.00 0.00 0.00 4.00
5703 5970 3.709987 CTTGAGCTTTTTGGGTGAACTG 58.290 45.455 0.00 0.00 0.00 3.16
5704 5971 2.101415 GCTTGAGCTTTTTGGGTGAACT 59.899 45.455 0.00 0.00 38.21 3.01
5705 5972 2.473816 GCTTGAGCTTTTTGGGTGAAC 58.526 47.619 0.00 0.00 38.21 3.18
5706 5973 2.888834 GCTTGAGCTTTTTGGGTGAA 57.111 45.000 0.00 0.00 38.21 3.18
5718 5985 2.821969 TCTTTTTCCCATCAGCTTGAGC 59.178 45.455 0.00 0.00 42.49 4.26
5719 5986 4.142227 CCATCTTTTTCCCATCAGCTTGAG 60.142 45.833 0.00 0.00 0.00 3.02
5720 5987 3.765511 CCATCTTTTTCCCATCAGCTTGA 59.234 43.478 0.00 0.00 0.00 3.02
5721 5988 3.118884 CCCATCTTTTTCCCATCAGCTTG 60.119 47.826 0.00 0.00 0.00 4.01
5722 5989 3.102204 CCCATCTTTTTCCCATCAGCTT 58.898 45.455 0.00 0.00 0.00 3.74
5723 5990 2.743553 CCCATCTTTTTCCCATCAGCT 58.256 47.619 0.00 0.00 0.00 4.24
5724 5991 1.137675 GCCCATCTTTTTCCCATCAGC 59.862 52.381 0.00 0.00 0.00 4.26
5725 5992 2.743553 AGCCCATCTTTTTCCCATCAG 58.256 47.619 0.00 0.00 0.00 2.90
5726 5993 2.925966 AGCCCATCTTTTTCCCATCA 57.074 45.000 0.00 0.00 0.00 3.07
5727 5994 3.006217 GCATAGCCCATCTTTTTCCCATC 59.994 47.826 0.00 0.00 0.00 3.51
5728 5995 2.967887 GCATAGCCCATCTTTTTCCCAT 59.032 45.455 0.00 0.00 0.00 4.00
5729 5996 2.292126 TGCATAGCCCATCTTTTTCCCA 60.292 45.455 0.00 0.00 0.00 4.37
5730 5997 2.387757 TGCATAGCCCATCTTTTTCCC 58.612 47.619 0.00 0.00 0.00 3.97
5731 5998 4.677673 AATGCATAGCCCATCTTTTTCC 57.322 40.909 0.00 0.00 0.00 3.13
5732 5999 7.647907 CATAAATGCATAGCCCATCTTTTTC 57.352 36.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.