Multiple sequence alignment - TraesCS3A01G401800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G401800 chr3A 100.000 2861 0 0 1 2861 647490135 647492995 0.000000e+00 5284.0
1 TraesCS3A01G401800 chr3A 82.941 850 104 21 1135 1949 647803014 647802171 0.000000e+00 728.0
2 TraesCS3A01G401800 chr3A 93.852 244 15 0 26 269 474958143 474958386 4.500000e-98 368.0
3 TraesCS3A01G401800 chr3A 78.409 352 55 15 656 1000 647804678 647804341 2.890000e-50 209.0
4 TraesCS3A01G401800 chr3B 95.581 2082 77 4 562 2639 672961098 672963168 0.000000e+00 3321.0
5 TraesCS3A01G401800 chr3B 95.042 1674 64 4 982 2639 673061358 673063028 0.000000e+00 2614.0
6 TraesCS3A01G401800 chr3B 85.856 905 107 14 812 1701 674280555 674279657 0.000000e+00 942.0
7 TraesCS3A01G401800 chr3B 93.556 419 19 1 562 980 673060780 673061190 4.050000e-173 617.0
8 TraesCS3A01G401800 chr3B 85.841 226 16 10 2645 2861 672965890 672966108 2.870000e-55 226.0
9 TraesCS3A01G401800 chr3B 85.841 226 16 10 2645 2861 673013417 673013635 2.870000e-55 226.0
10 TraesCS3A01G401800 chr3D 95.417 960 33 3 594 1550 511395904 511396855 0.000000e+00 1519.0
11 TraesCS3A01G401800 chr3D 84.920 1313 166 25 656 1949 511941715 511940416 0.000000e+00 1299.0
12 TraesCS3A01G401800 chr3D 95.928 442 10 2 1801 2240 511405579 511406014 0.000000e+00 710.0
13 TraesCS3A01G401800 chr3D 95.802 262 10 1 295 556 111257042 111256782 3.410000e-114 422.0
14 TraesCS3A01G401800 chr3D 95.802 262 9 2 295 556 359861540 359861281 3.410000e-114 422.0
15 TraesCS3A01G401800 chr3D 94.424 269 10 1 2237 2500 511406050 511406318 2.650000e-110 409.0
16 TraesCS3A01G401800 chr3D 94.361 266 7 3 2601 2861 511420946 511421208 4.440000e-108 401.0
17 TraesCS3A01G401800 chr3D 93.548 217 4 1 1546 1762 511405373 511405579 5.950000e-82 315.0
18 TraesCS3A01G401800 chr3D 84.956 226 18 10 2645 2861 511428353 511428571 6.210000e-52 215.0
19 TraesCS3A01G401800 chr3D 98.039 51 1 0 555 605 511395752 511395802 3.930000e-14 89.8
20 TraesCS3A01G401800 chrUn 93.556 419 19 1 562 980 386104031 386103621 4.050000e-173 617.0
21 TraesCS3A01G401800 chr7A 97.328 262 7 0 295 556 554861610 554861349 2.020000e-121 446.0
22 TraesCS3A01G401800 chr7A 93.574 249 14 2 26 274 403934296 403934050 1.250000e-98 370.0
23 TraesCS3A01G401800 chr7A 93.522 247 16 0 26 272 80986852 80986606 4.500000e-98 368.0
24 TraesCS3A01G401800 chr4A 96.654 269 8 1 292 559 340504503 340504235 2.020000e-121 446.0
25 TraesCS3A01G401800 chr4A 95.572 271 12 0 286 556 600730035 600729765 4.380000e-118 435.0
26 TraesCS3A01G401800 chr2B 96.169 261 10 0 296 556 72134409 72134669 7.330000e-116 427.0
27 TraesCS3A01G401800 chr7D 95.802 262 11 0 296 557 182347677 182347416 9.480000e-115 424.0
28 TraesCS3A01G401800 chr2A 94.872 273 9 4 285 556 488923246 488923514 3.410000e-114 422.0
29 TraesCS3A01G401800 chr2A 93.827 243 15 0 26 268 697374880 697374638 1.620000e-97 366.0
30 TraesCS3A01G401800 chr2D 95.455 264 10 2 294 557 471067569 471067308 1.230000e-113 420.0
31 TraesCS3A01G401800 chr5A 95.181 249 12 0 26 274 372645092 372645340 7.430000e-106 394.0
32 TraesCS3A01G401800 chr5A 93.033 244 17 0 26 269 680718777 680719020 9.750000e-95 357.0
33 TraesCS3A01G401800 chr6A 92.829 251 18 0 26 276 470142490 470142240 5.830000e-97 364.0
34 TraesCS3A01G401800 chr6A 92.430 251 19 0 26 276 31012597 31012847 2.710000e-95 359.0
35 TraesCS3A01G401800 chr1A 92.713 247 17 1 26 272 461054196 461053951 3.510000e-94 355.0
36 TraesCS3A01G401800 chr5B 100.000 28 0 0 1 28 372241196 372241169 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G401800 chr3A 647490135 647492995 2860 False 5284.0 5284 100.000000 1 2861 1 chr3A.!!$F2 2860
1 TraesCS3A01G401800 chr3A 647802171 647804678 2507 True 468.5 728 80.675000 656 1949 2 chr3A.!!$R1 1293
2 TraesCS3A01G401800 chr3B 672961098 672966108 5010 False 1773.5 3321 90.711000 562 2861 2 chr3B.!!$F2 2299
3 TraesCS3A01G401800 chr3B 673060780 673063028 2248 False 1615.5 2614 94.299000 562 2639 2 chr3B.!!$F3 2077
4 TraesCS3A01G401800 chr3B 674279657 674280555 898 True 942.0 942 85.856000 812 1701 1 chr3B.!!$R1 889
5 TraesCS3A01G401800 chr3D 511940416 511941715 1299 True 1299.0 1299 84.920000 656 1949 1 chr3D.!!$R3 1293
6 TraesCS3A01G401800 chr3D 511395752 511396855 1103 False 804.4 1519 96.728000 555 1550 2 chr3D.!!$F3 995
7 TraesCS3A01G401800 chr3D 511405373 511406318 945 False 478.0 710 94.633333 1546 2500 3 chr3D.!!$F4 954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 1075 1.002366 GCATTCACAAGATCGACGCT 58.998 50.0 0.0 0.0 0.00 5.07 F
1404 2991 1.014564 CCTTCTCTTTCGACACCGGC 61.015 60.0 0.0 0.0 36.24 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 3377 0.251121 TGGTGGTGCGATTGATGGTT 60.251 50.0 0.0 0.0 0.0 3.67 R
2723 7109 1.140312 AGGTGTCTGGTGGTTGATGT 58.860 50.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.480643 ACTTGCTCTTAGTAACATAACACATC 57.519 34.615 0.00 0.00 0.00 3.06
42 43 7.549488 ACTTGCTCTTAGTAACATAACACATCC 59.451 37.037 0.00 0.00 0.00 3.51
43 44 6.346096 TGCTCTTAGTAACATAACACATCCC 58.654 40.000 0.00 0.00 0.00 3.85
44 45 6.070481 TGCTCTTAGTAACATAACACATCCCA 60.070 38.462 0.00 0.00 0.00 4.37
45 46 6.821665 GCTCTTAGTAACATAACACATCCCAA 59.178 38.462 0.00 0.00 0.00 4.12
46 47 7.011482 GCTCTTAGTAACATAACACATCCCAAG 59.989 40.741 0.00 0.00 0.00 3.61
47 48 8.141298 TCTTAGTAACATAACACATCCCAAGA 57.859 34.615 0.00 0.00 0.00 3.02
48 49 8.038944 TCTTAGTAACATAACACATCCCAAGAC 58.961 37.037 0.00 0.00 0.00 3.01
49 50 6.121776 AGTAACATAACACATCCCAAGACA 57.878 37.500 0.00 0.00 0.00 3.41
50 51 6.539173 AGTAACATAACACATCCCAAGACAA 58.461 36.000 0.00 0.00 0.00 3.18
51 52 7.001674 AGTAACATAACACATCCCAAGACAAA 58.998 34.615 0.00 0.00 0.00 2.83
52 53 6.916360 AACATAACACATCCCAAGACAAAT 57.084 33.333 0.00 0.00 0.00 2.32
53 54 6.916360 ACATAACACATCCCAAGACAAATT 57.084 33.333 0.00 0.00 0.00 1.82
54 55 7.301868 ACATAACACATCCCAAGACAAATTT 57.698 32.000 0.00 0.00 0.00 1.82
55 56 7.153985 ACATAACACATCCCAAGACAAATTTG 58.846 34.615 16.67 16.67 0.00 2.32
56 57 3.993920 ACACATCCCAAGACAAATTTGC 58.006 40.909 18.12 10.76 0.00 3.68
57 58 3.642848 ACACATCCCAAGACAAATTTGCT 59.357 39.130 18.12 12.78 0.00 3.91
58 59 4.101430 ACACATCCCAAGACAAATTTGCTT 59.899 37.500 18.12 17.42 0.00 3.91
59 60 5.304101 ACACATCCCAAGACAAATTTGCTTA 59.696 36.000 18.12 8.05 0.00 3.09
60 61 6.014327 ACACATCCCAAGACAAATTTGCTTAT 60.014 34.615 18.12 9.70 0.00 1.73
61 62 6.311935 CACATCCCAAGACAAATTTGCTTATG 59.688 38.462 18.12 19.73 0.00 1.90
62 63 6.014327 ACATCCCAAGACAAATTTGCTTATGT 60.014 34.615 18.12 20.21 0.00 2.29
63 64 5.782047 TCCCAAGACAAATTTGCTTATGTG 58.218 37.500 18.12 10.37 0.00 3.21
64 65 4.931002 CCCAAGACAAATTTGCTTATGTGG 59.069 41.667 18.12 16.91 0.00 4.17
65 66 4.389687 CCAAGACAAATTTGCTTATGTGGC 59.610 41.667 18.12 0.00 0.00 5.01
66 67 4.870123 AGACAAATTTGCTTATGTGGCA 57.130 36.364 18.12 0.00 37.97 4.92
67 68 4.559153 AGACAAATTTGCTTATGTGGCAC 58.441 39.130 18.12 11.55 39.55 5.01
68 69 3.663025 ACAAATTTGCTTATGTGGCACC 58.337 40.909 18.12 0.00 39.55 5.01
69 70 3.324556 ACAAATTTGCTTATGTGGCACCT 59.675 39.130 18.12 8.06 39.55 4.00
70 71 4.526262 ACAAATTTGCTTATGTGGCACCTA 59.474 37.500 18.12 6.88 39.55 3.08
71 72 4.989279 AATTTGCTTATGTGGCACCTAG 57.011 40.909 16.26 10.46 39.55 3.02
72 73 3.433306 TTTGCTTATGTGGCACCTAGT 57.567 42.857 16.26 1.15 39.55 2.57
73 74 3.433306 TTGCTTATGTGGCACCTAGTT 57.567 42.857 16.26 0.00 39.55 2.24
74 75 4.561500 TTGCTTATGTGGCACCTAGTTA 57.438 40.909 16.26 0.00 39.55 2.24
75 76 4.561500 TGCTTATGTGGCACCTAGTTAA 57.438 40.909 16.26 4.81 34.56 2.01
76 77 5.110814 TGCTTATGTGGCACCTAGTTAAT 57.889 39.130 16.26 2.24 34.56 1.40
77 78 4.881273 TGCTTATGTGGCACCTAGTTAATG 59.119 41.667 16.26 0.00 34.56 1.90
78 79 5.123227 GCTTATGTGGCACCTAGTTAATGA 58.877 41.667 16.26 0.00 0.00 2.57
79 80 5.765182 GCTTATGTGGCACCTAGTTAATGAT 59.235 40.000 16.26 0.00 0.00 2.45
80 81 6.293626 GCTTATGTGGCACCTAGTTAATGATG 60.294 42.308 16.26 0.00 0.00 3.07
81 82 4.835284 TGTGGCACCTAGTTAATGATGA 57.165 40.909 16.26 0.00 0.00 2.92
82 83 4.769688 TGTGGCACCTAGTTAATGATGAG 58.230 43.478 16.26 0.00 0.00 2.90
83 84 4.469586 TGTGGCACCTAGTTAATGATGAGA 59.530 41.667 16.26 0.00 0.00 3.27
84 85 5.053145 GTGGCACCTAGTTAATGATGAGAG 58.947 45.833 6.29 0.00 0.00 3.20
85 86 4.962362 TGGCACCTAGTTAATGATGAGAGA 59.038 41.667 0.00 0.00 0.00 3.10
86 87 5.163405 TGGCACCTAGTTAATGATGAGAGAC 60.163 44.000 0.00 0.00 0.00 3.36
87 88 4.979197 GCACCTAGTTAATGATGAGAGACG 59.021 45.833 0.00 0.00 0.00 4.18
88 89 5.450688 GCACCTAGTTAATGATGAGAGACGT 60.451 44.000 0.00 0.00 0.00 4.34
89 90 5.974158 CACCTAGTTAATGATGAGAGACGTG 59.026 44.000 0.00 0.00 0.00 4.49
90 91 5.652891 ACCTAGTTAATGATGAGAGACGTGT 59.347 40.000 0.00 0.00 0.00 4.49
91 92 6.153000 ACCTAGTTAATGATGAGAGACGTGTT 59.847 38.462 0.00 0.00 0.00 3.32
92 93 7.036220 CCTAGTTAATGATGAGAGACGTGTTT 58.964 38.462 0.00 0.00 0.00 2.83
93 94 6.712241 AGTTAATGATGAGAGACGTGTTTG 57.288 37.500 0.00 0.00 0.00 2.93
94 95 5.639506 AGTTAATGATGAGAGACGTGTTTGG 59.360 40.000 0.00 0.00 0.00 3.28
95 96 3.961480 ATGATGAGAGACGTGTTTGGA 57.039 42.857 0.00 0.00 0.00 3.53
96 97 3.303881 TGATGAGAGACGTGTTTGGAG 57.696 47.619 0.00 0.00 0.00 3.86
97 98 2.628178 TGATGAGAGACGTGTTTGGAGT 59.372 45.455 0.00 0.00 0.00 3.85
98 99 3.824443 TGATGAGAGACGTGTTTGGAGTA 59.176 43.478 0.00 0.00 0.00 2.59
99 100 4.279922 TGATGAGAGACGTGTTTGGAGTAA 59.720 41.667 0.00 0.00 0.00 2.24
100 101 3.973657 TGAGAGACGTGTTTGGAGTAAC 58.026 45.455 0.00 0.00 0.00 2.50
101 102 3.382227 TGAGAGACGTGTTTGGAGTAACA 59.618 43.478 0.00 0.00 35.75 2.41
102 103 4.038763 TGAGAGACGTGTTTGGAGTAACAT 59.961 41.667 0.00 0.00 39.93 2.71
103 104 5.242171 TGAGAGACGTGTTTGGAGTAACATA 59.758 40.000 0.00 0.00 39.93 2.29
104 105 6.071560 TGAGAGACGTGTTTGGAGTAACATAT 60.072 38.462 0.00 0.00 39.93 1.78
105 106 6.698380 AGAGACGTGTTTGGAGTAACATATT 58.302 36.000 0.00 0.00 39.93 1.28
106 107 7.833786 AGAGACGTGTTTGGAGTAACATATTA 58.166 34.615 0.00 0.00 39.93 0.98
107 108 8.475639 AGAGACGTGTTTGGAGTAACATATTAT 58.524 33.333 0.00 0.00 39.93 1.28
108 109 8.420374 AGACGTGTTTGGAGTAACATATTATG 57.580 34.615 0.00 2.03 39.93 1.90
125 126 8.820933 ACATATTATGTTATCATCACATAGCGC 58.179 33.333 0.00 0.00 41.63 5.92
126 127 9.038803 CATATTATGTTATCATCACATAGCGCT 57.961 33.333 17.26 17.26 38.16 5.92
127 128 7.912056 ATTATGTTATCATCACATAGCGCTT 57.088 32.000 18.68 0.00 38.16 4.68
128 129 5.852738 ATGTTATCATCACATAGCGCTTC 57.147 39.130 18.68 0.00 32.88 3.86
129 130 4.948847 TGTTATCATCACATAGCGCTTCT 58.051 39.130 18.68 0.00 0.00 2.85
130 131 4.984785 TGTTATCATCACATAGCGCTTCTC 59.015 41.667 18.68 0.00 0.00 2.87
131 132 3.740631 ATCATCACATAGCGCTTCTCA 57.259 42.857 18.68 0.00 0.00 3.27
132 133 3.525268 TCATCACATAGCGCTTCTCAA 57.475 42.857 18.68 0.00 0.00 3.02
133 134 3.451526 TCATCACATAGCGCTTCTCAAG 58.548 45.455 18.68 0.00 0.00 3.02
134 135 3.131046 TCATCACATAGCGCTTCTCAAGA 59.869 43.478 18.68 7.36 0.00 3.02
135 136 3.592898 TCACATAGCGCTTCTCAAGAA 57.407 42.857 18.68 0.00 0.00 2.52
136 137 3.925379 TCACATAGCGCTTCTCAAGAAA 58.075 40.909 18.68 0.00 33.07 2.52
137 138 4.507710 TCACATAGCGCTTCTCAAGAAAT 58.492 39.130 18.68 0.00 33.07 2.17
138 139 4.330894 TCACATAGCGCTTCTCAAGAAATG 59.669 41.667 18.68 12.57 33.07 2.32
139 140 4.093998 CACATAGCGCTTCTCAAGAAATGT 59.906 41.667 18.68 13.30 33.34 2.71
140 141 4.697352 ACATAGCGCTTCTCAAGAAATGTT 59.303 37.500 18.68 0.00 30.62 2.71
141 142 5.874810 ACATAGCGCTTCTCAAGAAATGTTA 59.125 36.000 18.68 0.00 30.62 2.41
142 143 6.371548 ACATAGCGCTTCTCAAGAAATGTTAA 59.628 34.615 18.68 0.00 30.62 2.01
143 144 5.288543 AGCGCTTCTCAAGAAATGTTAAG 57.711 39.130 2.64 0.00 33.07 1.85
144 145 4.757149 AGCGCTTCTCAAGAAATGTTAAGT 59.243 37.500 2.64 0.00 33.07 2.24
145 146 5.082723 GCGCTTCTCAAGAAATGTTAAGTC 58.917 41.667 0.00 0.00 33.07 3.01
146 147 5.106908 GCGCTTCTCAAGAAATGTTAAGTCT 60.107 40.000 0.00 0.00 33.07 3.24
147 148 6.090898 GCGCTTCTCAAGAAATGTTAAGTCTA 59.909 38.462 0.00 0.00 33.07 2.59
148 149 7.201565 GCGCTTCTCAAGAAATGTTAAGTCTAT 60.202 37.037 0.00 0.00 33.07 1.98
149 150 9.302345 CGCTTCTCAAGAAATGTTAAGTCTATA 57.698 33.333 0.00 0.00 33.07 1.31
167 168 9.627123 AAGTCTATAAGCTAATAAATGCAACCA 57.373 29.630 0.00 0.00 0.00 3.67
168 169 9.799106 AGTCTATAAGCTAATAAATGCAACCAT 57.201 29.630 0.00 0.00 0.00 3.55
213 214 9.804758 AACACTTAGCACTATGAAGATAGTAAC 57.195 33.333 0.00 0.00 42.55 2.50
214 215 8.967918 ACACTTAGCACTATGAAGATAGTAACA 58.032 33.333 0.00 0.00 42.55 2.41
215 216 9.973450 CACTTAGCACTATGAAGATAGTAACAT 57.027 33.333 0.00 0.00 42.55 2.71
236 237 8.962884 AACATAAACTAGTGTCATATGCATGA 57.037 30.769 10.16 0.00 38.90 3.07
237 238 9.565090 AACATAAACTAGTGTCATATGCATGAT 57.435 29.630 10.16 0.00 43.03 2.45
248 249 9.566530 GTGTCATATGCATGATACTAGTCTAAG 57.433 37.037 10.16 0.00 45.15 2.18
249 250 9.301897 TGTCATATGCATGATACTAGTCTAAGT 57.698 33.333 10.16 0.00 43.03 2.24
256 257 8.585881 TGCATGATACTAGTCTAAGTTATTCCC 58.414 37.037 0.00 0.00 0.00 3.97
257 258 8.035984 GCATGATACTAGTCTAAGTTATTCCCC 58.964 40.741 0.00 0.00 0.00 4.81
258 259 9.090103 CATGATACTAGTCTAAGTTATTCCCCA 57.910 37.037 0.00 0.00 0.00 4.96
259 260 8.474710 TGATACTAGTCTAAGTTATTCCCCAC 57.525 38.462 0.00 0.00 0.00 4.61
260 261 8.287350 TGATACTAGTCTAAGTTATTCCCCACT 58.713 37.037 0.00 0.00 0.00 4.00
261 262 9.804977 GATACTAGTCTAAGTTATTCCCCACTA 57.195 37.037 0.00 0.00 0.00 2.74
263 264 8.480133 ACTAGTCTAAGTTATTCCCCACTATG 57.520 38.462 0.00 0.00 0.00 2.23
264 265 8.287350 ACTAGTCTAAGTTATTCCCCACTATGA 58.713 37.037 0.00 0.00 0.00 2.15
265 266 7.362802 AGTCTAAGTTATTCCCCACTATGAC 57.637 40.000 0.00 0.00 0.00 3.06
266 267 6.326843 AGTCTAAGTTATTCCCCACTATGACC 59.673 42.308 0.00 0.00 31.22 4.02
267 268 6.099269 GTCTAAGTTATTCCCCACTATGACCA 59.901 42.308 0.00 0.00 0.00 4.02
268 269 5.373812 AAGTTATTCCCCACTATGACCAG 57.626 43.478 0.00 0.00 0.00 4.00
269 270 4.371681 AGTTATTCCCCACTATGACCAGT 58.628 43.478 0.00 0.00 0.00 4.00
270 271 4.409247 AGTTATTCCCCACTATGACCAGTC 59.591 45.833 0.00 0.00 0.00 3.51
271 272 2.642171 TTCCCCACTATGACCAGTCT 57.358 50.000 0.00 0.00 0.00 3.24
272 273 3.769189 TTCCCCACTATGACCAGTCTA 57.231 47.619 0.00 0.00 0.00 2.59
273 274 3.769189 TCCCCACTATGACCAGTCTAA 57.231 47.619 0.00 0.00 0.00 2.10
274 275 4.280789 TCCCCACTATGACCAGTCTAAT 57.719 45.455 0.00 0.00 0.00 1.73
275 276 3.967326 TCCCCACTATGACCAGTCTAATG 59.033 47.826 0.00 0.00 0.00 1.90
276 277 3.711704 CCCCACTATGACCAGTCTAATGT 59.288 47.826 0.00 0.00 0.00 2.71
277 278 4.443457 CCCCACTATGACCAGTCTAATGTG 60.443 50.000 0.00 3.80 0.00 3.21
278 279 4.443457 CCCACTATGACCAGTCTAATGTGG 60.443 50.000 17.48 17.48 41.23 4.17
284 285 3.508845 ACCAGTCTAATGTGGTTGCTT 57.491 42.857 0.00 0.00 45.17 3.91
285 286 3.832527 ACCAGTCTAATGTGGTTGCTTT 58.167 40.909 0.00 0.00 45.17 3.51
286 287 4.215109 ACCAGTCTAATGTGGTTGCTTTT 58.785 39.130 0.00 0.00 45.17 2.27
287 288 4.649218 ACCAGTCTAATGTGGTTGCTTTTT 59.351 37.500 0.00 0.00 45.17 1.94
306 307 5.881923 TTTTTGCTATATACTCCCTCCGT 57.118 39.130 0.00 0.00 0.00 4.69
307 308 5.881923 TTTTGCTATATACTCCCTCCGTT 57.118 39.130 0.00 0.00 0.00 4.44
308 309 5.881923 TTTGCTATATACTCCCTCCGTTT 57.118 39.130 0.00 0.00 0.00 3.60
309 310 5.464030 TTGCTATATACTCCCTCCGTTTC 57.536 43.478 0.00 0.00 0.00 2.78
310 311 4.737578 TGCTATATACTCCCTCCGTTTCT 58.262 43.478 0.00 0.00 0.00 2.52
311 312 5.145564 TGCTATATACTCCCTCCGTTTCTT 58.854 41.667 0.00 0.00 0.00 2.52
312 313 5.601313 TGCTATATACTCCCTCCGTTTCTTT 59.399 40.000 0.00 0.00 0.00 2.52
313 314 6.099269 TGCTATATACTCCCTCCGTTTCTTTT 59.901 38.462 0.00 0.00 0.00 2.27
314 315 6.990939 GCTATATACTCCCTCCGTTTCTTTTT 59.009 38.462 0.00 0.00 0.00 1.94
315 316 8.146412 GCTATATACTCCCTCCGTTTCTTTTTA 58.854 37.037 0.00 0.00 0.00 1.52
316 317 9.473640 CTATATACTCCCTCCGTTTCTTTTTAC 57.526 37.037 0.00 0.00 0.00 2.01
317 318 4.701651 ACTCCCTCCGTTTCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
318 319 4.639334 ACTCCCTCCGTTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
319 320 4.001652 CTCCCTCCGTTTCTTTTTACTCC 58.998 47.826 0.00 0.00 0.00 3.85
320 321 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
321 322 2.159037 CCTCCGTTTCTTTTTACTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
322 323 2.803956 CTCCGTTTCTTTTTACTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
323 324 3.404899 TCCGTTTCTTTTTACTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
324 325 4.567971 TCCGTTTCTTTTTACTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
325 326 5.180271 TCCGTTTCTTTTTACTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
326 327 6.339730 TCCGTTTCTTTTTACTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
327 328 6.817641 TCCGTTTCTTTTTACTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
328 329 7.010738 TCCGTTTCTTTTTACTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
329 330 7.010738 CCGTTTCTTTTTACTCCGCATATAAGA 59.989 37.037 0.00 0.00 0.00 2.10
330 331 8.548721 CGTTTCTTTTTACTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
334 335 8.836413 TCTTTTTACTCCGCATATAAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
335 336 8.514330 TTTTTACTCCGCATATAAGATTTGGT 57.486 30.769 0.00 0.00 0.00 3.67
336 337 7.724305 TTTACTCCGCATATAAGATTTGGTC 57.276 36.000 0.00 0.00 0.00 4.02
337 338 5.290493 ACTCCGCATATAAGATTTGGTCA 57.710 39.130 0.00 0.00 0.00 4.02
338 339 5.680619 ACTCCGCATATAAGATTTGGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
339 340 6.119536 ACTCCGCATATAAGATTTGGTCAAA 58.880 36.000 0.00 0.00 34.46 2.69
340 341 6.260936 ACTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
341 342 6.119536 TCCGCATATAAGATTTGGTCAAAGT 58.880 36.000 2.55 0.00 33.32 2.66
342 343 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
343 344 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
344 345 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
345 346 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
346 347 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
350 351 7.639113 AAGATTTGGTCAAAGTCAAACTACA 57.361 32.000 2.55 0.00 35.97 2.74
351 352 7.027778 AGATTTGGTCAAAGTCAAACTACAC 57.972 36.000 2.55 0.00 35.97 2.90
352 353 6.601613 AGATTTGGTCAAAGTCAAACTACACA 59.398 34.615 2.55 0.00 35.97 3.72
353 354 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
354 355 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
355 356 6.576662 TGGTCAAAGTCAAACTACACAAAA 57.423 33.333 0.00 0.00 0.00 2.44
356 357 7.164230 TGGTCAAAGTCAAACTACACAAAAT 57.836 32.000 0.00 0.00 0.00 1.82
357 358 7.607250 TGGTCAAAGTCAAACTACACAAAATT 58.393 30.769 0.00 0.00 0.00 1.82
358 359 8.091449 TGGTCAAAGTCAAACTACACAAAATTT 58.909 29.630 0.00 0.00 0.00 1.82
359 360 8.379902 GGTCAAAGTCAAACTACACAAAATTTG 58.620 33.333 3.89 3.89 34.11 2.32
360 361 9.134734 GTCAAAGTCAAACTACACAAAATTTGA 57.865 29.630 13.19 0.00 38.42 2.69
436 437 5.932021 GAAAATACATTTCGTGGTGCATC 57.068 39.130 0.00 0.00 38.21 3.91
437 438 5.640732 GAAAATACATTTCGTGGTGCATCT 58.359 37.500 0.00 0.00 38.21 2.90
438 439 4.621068 AATACATTTCGTGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
439 440 2.183478 ACATTTCGTGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
440 441 2.715046 ACATTTCGTGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
441 442 3.872696 ACATTTCGTGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
442 443 4.260985 ACATTTCGTGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
443 444 4.094887 ACATTTCGTGGTGCATCTGATAAC 59.905 41.667 0.00 0.00 0.00 1.89
444 445 1.921243 TCGTGGTGCATCTGATAACG 58.079 50.000 0.00 0.00 0.00 3.18
445 446 1.203758 TCGTGGTGCATCTGATAACGT 59.796 47.619 6.66 0.00 0.00 3.99
446 447 1.999735 CGTGGTGCATCTGATAACGTT 59.000 47.619 5.88 5.88 0.00 3.99
447 448 2.222796 CGTGGTGCATCTGATAACGTTG 60.223 50.000 11.99 0.00 0.00 4.10
448 449 3.000041 GTGGTGCATCTGATAACGTTGA 59.000 45.455 11.99 0.00 0.00 3.18
449 450 3.623060 GTGGTGCATCTGATAACGTTGAT 59.377 43.478 11.99 1.69 0.00 2.57
450 451 4.094887 GTGGTGCATCTGATAACGTTGATT 59.905 41.667 11.99 0.00 0.00 2.57
451 452 4.699735 TGGTGCATCTGATAACGTTGATTT 59.300 37.500 11.99 0.00 0.00 2.17
452 453 5.163764 TGGTGCATCTGATAACGTTGATTTC 60.164 40.000 11.99 3.40 0.00 2.17
453 454 5.163764 GGTGCATCTGATAACGTTGATTTCA 60.164 40.000 11.99 7.83 0.00 2.69
454 455 6.458751 GGTGCATCTGATAACGTTGATTTCAT 60.459 38.462 11.99 0.00 0.00 2.57
455 456 7.254761 GGTGCATCTGATAACGTTGATTTCATA 60.255 37.037 11.99 2.48 0.00 2.15
456 457 8.285394 GTGCATCTGATAACGTTGATTTCATAT 58.715 33.333 11.99 4.60 0.00 1.78
457 458 8.839343 TGCATCTGATAACGTTGATTTCATATT 58.161 29.630 11.99 0.00 0.00 1.28
458 459 9.110617 GCATCTGATAACGTTGATTTCATATTG 57.889 33.333 11.99 7.63 0.00 1.90
461 462 9.377312 TCTGATAACGTTGATTTCATATTGTCA 57.623 29.630 11.99 0.00 0.00 3.58
462 463 9.986833 CTGATAACGTTGATTTCATATTGTCAA 57.013 29.630 11.99 0.00 0.00 3.18
510 511 9.999009 AGTTAGTCAAACTTTACAAAGCTTAAC 57.001 29.630 0.00 0.00 46.61 2.01
511 512 9.999009 GTTAGTCAAACTTTACAAAGCTTAACT 57.001 29.630 0.00 1.07 39.63 2.24
547 548 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
548 549 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
549 550 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
550 551 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
551 552 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
552 553 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
553 554 4.691216 CAGACTAAAAAGAAACGGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
698 812 3.242413 CGAATTCGACTACAATTGGGCTG 60.242 47.826 23.29 0.00 43.02 4.85
739 857 2.367241 GGATCCAGTCTTTAGGCCTCTC 59.633 54.545 9.68 0.00 0.00 3.20
740 858 2.930109 TCCAGTCTTTAGGCCTCTCT 57.070 50.000 9.68 0.00 0.00 3.10
741 859 2.741145 TCCAGTCTTTAGGCCTCTCTC 58.259 52.381 9.68 0.00 0.00 3.20
742 860 2.313342 TCCAGTCTTTAGGCCTCTCTCT 59.687 50.000 9.68 0.00 0.00 3.10
743 861 2.693074 CCAGTCTTTAGGCCTCTCTCTC 59.307 54.545 9.68 0.00 0.00 3.20
744 862 3.627237 CCAGTCTTTAGGCCTCTCTCTCT 60.627 52.174 9.68 0.00 0.00 3.10
745 863 4.385865 CCAGTCTTTAGGCCTCTCTCTCTA 60.386 50.000 9.68 0.00 0.00 2.43
746 864 5.385198 CAGTCTTTAGGCCTCTCTCTCTAT 58.615 45.833 9.68 0.00 0.00 1.98
758 876 7.333423 GGCCTCTCTCTCTATATATATACTGCG 59.667 44.444 0.00 0.00 0.00 5.18
763 881 8.732746 TCTCTCTATATATATACTGCGTGCAA 57.267 34.615 0.00 0.00 0.00 4.08
819 953 2.022240 CTAAGCGGCTCCAGGGAGAC 62.022 65.000 19.34 15.48 46.38 3.36
876 1021 2.037772 ACGTTCTGATCAGAAGCACCTT 59.962 45.455 33.35 15.65 46.93 3.50
924 1069 3.084039 TGGGTTCAGCATTCACAAGATC 58.916 45.455 0.00 0.00 0.00 2.75
930 1075 1.002366 GCATTCACAAGATCGACGCT 58.998 50.000 0.00 0.00 0.00 5.07
1244 2827 3.851976 TCTTGGGAATCTCCAAATCCTCA 59.148 43.478 5.07 0.00 45.13 3.86
1309 2896 1.889170 TCGAGGAGGATGAATGGATCG 59.111 52.381 0.00 0.00 0.00 3.69
1377 2964 4.455877 GGGGTCAACAAGTACAATCTCAAG 59.544 45.833 0.00 0.00 0.00 3.02
1404 2991 1.014564 CCTTCTCTTTCGACACCGGC 61.015 60.000 0.00 0.00 36.24 6.13
1470 3057 1.202698 GGCCAGGGCTACTATGACAAG 60.203 57.143 10.60 0.00 41.60 3.16
1640 3235 3.750130 GCCTCATATGCCACTCTAACATG 59.250 47.826 0.00 0.00 0.00 3.21
1848 3446 0.392595 CCGGGTTTTCTCCTGTAGCC 60.393 60.000 0.00 0.00 32.33 3.93
2066 3680 8.915871 AACACATGCAAATCATACTAAATGTC 57.084 30.769 0.00 0.00 33.19 3.06
2119 3733 9.624697 TTTTCAGCATATAAACAGCAAAAGTAG 57.375 29.630 0.00 0.00 0.00 2.57
2292 3945 2.174639 AGGTTCATTGTCTCCACCAACA 59.825 45.455 0.00 0.00 0.00 3.33
2435 4105 8.860517 TCATAATTAGGTATATCCCTGCTGAT 57.139 34.615 0.00 0.00 35.97 2.90
2437 4107 9.911788 CATAATTAGGTATATCCCTGCTGATTT 57.088 33.333 0.00 0.00 35.97 2.17
2620 4290 1.686052 GTTGTGTTGGCCTCAAATGGA 59.314 47.619 3.32 0.00 34.28 3.41
2621 4291 2.079170 TGTGTTGGCCTCAAATGGAA 57.921 45.000 3.32 0.00 34.28 3.53
2639 4309 2.297033 GGAACAGAAAAAGGCAGATGCA 59.703 45.455 7.19 0.00 44.36 3.96
2642 4312 3.225104 ACAGAAAAAGGCAGATGCAGAA 58.775 40.909 7.19 0.00 44.36 3.02
2643 4313 3.638160 ACAGAAAAAGGCAGATGCAGAAA 59.362 39.130 7.19 0.00 44.36 2.52
2657 7043 4.519540 TGCAGAAAAAGGCTAATGAACC 57.480 40.909 0.00 0.00 0.00 3.62
2658 7044 3.894427 TGCAGAAAAAGGCTAATGAACCA 59.106 39.130 0.00 0.00 0.00 3.67
2660 7046 5.105063 GCAGAAAAAGGCTAATGAACCATC 58.895 41.667 0.00 0.00 0.00 3.51
2674 7060 5.715439 TGAACCATCTCCCTAACATTCAT 57.285 39.130 0.00 0.00 0.00 2.57
2675 7061 6.078456 TGAACCATCTCCCTAACATTCATT 57.922 37.500 0.00 0.00 0.00 2.57
2678 7064 7.127186 TGAACCATCTCCCTAACATTCATTCTA 59.873 37.037 0.00 0.00 0.00 2.10
2679 7065 6.831976 ACCATCTCCCTAACATTCATTCTAC 58.168 40.000 0.00 0.00 0.00 2.59
2680 7066 6.617371 ACCATCTCCCTAACATTCATTCTACT 59.383 38.462 0.00 0.00 0.00 2.57
2681 7067 7.127955 ACCATCTCCCTAACATTCATTCTACTT 59.872 37.037 0.00 0.00 0.00 2.24
2682 7068 7.995488 CCATCTCCCTAACATTCATTCTACTTT 59.005 37.037 0.00 0.00 0.00 2.66
2711 7097 5.762179 TTGTACTGTGAGAAATCCTGGAT 57.238 39.130 2.57 2.57 0.00 3.41
2723 7109 8.496916 TGAGAAATCCTGGATAATTGATTCAGA 58.503 33.333 10.13 0.00 43.28 3.27
2735 7121 3.786368 TGATTCAGACATCAACCACCA 57.214 42.857 0.00 0.00 29.81 4.17
2738 7124 2.839486 TCAGACATCAACCACCAGAC 57.161 50.000 0.00 0.00 0.00 3.51
2739 7125 2.046292 TCAGACATCAACCACCAGACA 58.954 47.619 0.00 0.00 0.00 3.41
2740 7126 2.146342 CAGACATCAACCACCAGACAC 58.854 52.381 0.00 0.00 0.00 3.67
2763 7149 8.421002 ACACCTTATACCATCATTAAATTTGGC 58.579 33.333 0.00 0.00 32.26 4.52
2764 7150 7.872483 CACCTTATACCATCATTAAATTTGGCC 59.128 37.037 0.00 0.00 32.26 5.36
2765 7151 7.789349 ACCTTATACCATCATTAAATTTGGCCT 59.211 33.333 3.32 0.00 32.26 5.19
2766 7152 8.090214 CCTTATACCATCATTAAATTTGGCCTG 58.910 37.037 3.32 0.00 32.26 4.85
2785 7171 3.614092 CTGACATTTCCAGGCACATACT 58.386 45.455 0.00 0.00 0.00 2.12
2790 7182 5.126067 ACATTTCCAGGCACATACTGTATC 58.874 41.667 0.00 0.00 34.16 2.24
2792 7184 2.661718 TCCAGGCACATACTGTATCGA 58.338 47.619 0.00 0.00 34.16 3.59
2800 7192 5.223382 GCACATACTGTATCGAAGCACTAT 58.777 41.667 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.582431 GATGTGTTATGTTACTAAGAGCAAGTA 57.418 33.333 0.00 0.00 0.00 2.24
16 17 7.549488 GGATGTGTTATGTTACTAAGAGCAAGT 59.451 37.037 0.00 0.00 0.00 3.16
17 18 7.011482 GGGATGTGTTATGTTACTAAGAGCAAG 59.989 40.741 0.00 0.00 0.00 4.01
18 19 6.821665 GGGATGTGTTATGTTACTAAGAGCAA 59.178 38.462 0.00 0.00 0.00 3.91
19 20 6.070481 TGGGATGTGTTATGTTACTAAGAGCA 60.070 38.462 0.00 0.00 0.00 4.26
20 21 6.346096 TGGGATGTGTTATGTTACTAAGAGC 58.654 40.000 0.00 0.00 0.00 4.09
21 22 8.258007 TCTTGGGATGTGTTATGTTACTAAGAG 58.742 37.037 0.00 0.00 0.00 2.85
22 23 8.038944 GTCTTGGGATGTGTTATGTTACTAAGA 58.961 37.037 0.00 0.00 0.00 2.10
23 24 7.822334 TGTCTTGGGATGTGTTATGTTACTAAG 59.178 37.037 0.00 0.00 0.00 2.18
24 25 7.681679 TGTCTTGGGATGTGTTATGTTACTAA 58.318 34.615 0.00 0.00 0.00 2.24
25 26 7.247456 TGTCTTGGGATGTGTTATGTTACTA 57.753 36.000 0.00 0.00 0.00 1.82
26 27 6.121776 TGTCTTGGGATGTGTTATGTTACT 57.878 37.500 0.00 0.00 0.00 2.24
27 28 6.811253 TTGTCTTGGGATGTGTTATGTTAC 57.189 37.500 0.00 0.00 0.00 2.50
28 29 8.415950 AATTTGTCTTGGGATGTGTTATGTTA 57.584 30.769 0.00 0.00 0.00 2.41
29 30 6.916360 ATTTGTCTTGGGATGTGTTATGTT 57.084 33.333 0.00 0.00 0.00 2.71
30 31 6.916360 AATTTGTCTTGGGATGTGTTATGT 57.084 33.333 0.00 0.00 0.00 2.29
31 32 6.091169 GCAAATTTGTCTTGGGATGTGTTATG 59.909 38.462 19.03 0.00 0.00 1.90
32 33 6.014327 AGCAAATTTGTCTTGGGATGTGTTAT 60.014 34.615 19.03 0.00 0.00 1.89
33 34 5.304101 AGCAAATTTGTCTTGGGATGTGTTA 59.696 36.000 19.03 0.00 0.00 2.41
34 35 4.101430 AGCAAATTTGTCTTGGGATGTGTT 59.899 37.500 19.03 0.00 0.00 3.32
35 36 3.642848 AGCAAATTTGTCTTGGGATGTGT 59.357 39.130 19.03 0.00 0.00 3.72
36 37 4.261578 AGCAAATTTGTCTTGGGATGTG 57.738 40.909 19.03 0.00 0.00 3.21
37 38 4.961438 AAGCAAATTTGTCTTGGGATGT 57.039 36.364 19.03 0.00 0.00 3.06
38 39 6.311935 CACATAAGCAAATTTGTCTTGGGATG 59.688 38.462 25.23 22.65 0.00 3.51
39 40 6.400568 CACATAAGCAAATTTGTCTTGGGAT 58.599 36.000 25.23 15.05 0.00 3.85
40 41 5.279406 CCACATAAGCAAATTTGTCTTGGGA 60.279 40.000 25.23 13.95 0.00 4.37
41 42 4.931002 CCACATAAGCAAATTTGTCTTGGG 59.069 41.667 25.23 20.65 0.00 4.12
42 43 4.389687 GCCACATAAGCAAATTTGTCTTGG 59.610 41.667 25.23 21.28 0.00 3.61
43 44 4.989797 TGCCACATAAGCAAATTTGTCTTG 59.010 37.500 25.23 17.81 37.28 3.02
44 45 4.990426 GTGCCACATAAGCAAATTTGTCTT 59.010 37.500 22.55 22.55 43.02 3.01
45 46 4.559153 GTGCCACATAAGCAAATTTGTCT 58.441 39.130 19.03 13.38 43.02 3.41
46 47 3.679502 GGTGCCACATAAGCAAATTTGTC 59.320 43.478 19.03 11.45 43.02 3.18
47 48 3.324556 AGGTGCCACATAAGCAAATTTGT 59.675 39.130 19.03 3.40 43.02 2.83
48 49 3.929094 AGGTGCCACATAAGCAAATTTG 58.071 40.909 14.03 14.03 43.02 2.32
49 50 4.772100 ACTAGGTGCCACATAAGCAAATTT 59.228 37.500 0.00 0.00 43.02 1.82
50 51 4.344104 ACTAGGTGCCACATAAGCAAATT 58.656 39.130 0.00 0.00 43.02 1.82
51 52 3.968265 ACTAGGTGCCACATAAGCAAAT 58.032 40.909 0.00 0.00 43.02 2.32
52 53 3.433306 ACTAGGTGCCACATAAGCAAA 57.567 42.857 0.00 0.00 43.02 3.68
53 54 3.433306 AACTAGGTGCCACATAAGCAA 57.567 42.857 0.00 0.00 43.02 3.91
54 55 4.561500 TTAACTAGGTGCCACATAAGCA 57.438 40.909 0.00 0.00 38.08 3.91
55 56 5.123227 TCATTAACTAGGTGCCACATAAGC 58.877 41.667 0.00 0.00 0.00 3.09
56 57 6.992123 TCATCATTAACTAGGTGCCACATAAG 59.008 38.462 0.00 0.00 0.00 1.73
57 58 6.894682 TCATCATTAACTAGGTGCCACATAA 58.105 36.000 0.00 0.00 0.00 1.90
58 59 6.326323 TCTCATCATTAACTAGGTGCCACATA 59.674 38.462 0.00 0.00 0.00 2.29
59 60 5.130975 TCTCATCATTAACTAGGTGCCACAT 59.869 40.000 0.00 0.00 0.00 3.21
60 61 4.469586 TCTCATCATTAACTAGGTGCCACA 59.530 41.667 0.00 0.00 0.00 4.17
61 62 5.023533 TCTCATCATTAACTAGGTGCCAC 57.976 43.478 0.00 0.00 0.00 5.01
62 63 4.962362 TCTCTCATCATTAACTAGGTGCCA 59.038 41.667 0.00 0.00 0.00 4.92
63 64 5.293560 GTCTCTCATCATTAACTAGGTGCC 58.706 45.833 0.00 0.00 0.00 5.01
64 65 4.979197 CGTCTCTCATCATTAACTAGGTGC 59.021 45.833 0.00 0.00 0.00 5.01
65 66 5.974158 CACGTCTCTCATCATTAACTAGGTG 59.026 44.000 0.00 0.00 0.00 4.00
66 67 5.652891 ACACGTCTCTCATCATTAACTAGGT 59.347 40.000 0.00 0.00 0.00 3.08
67 68 6.137794 ACACGTCTCTCATCATTAACTAGG 57.862 41.667 0.00 0.00 0.00 3.02
68 69 7.009631 CCAAACACGTCTCTCATCATTAACTAG 59.990 40.741 0.00 0.00 0.00 2.57
69 70 6.811665 CCAAACACGTCTCTCATCATTAACTA 59.188 38.462 0.00 0.00 0.00 2.24
70 71 5.639506 CCAAACACGTCTCTCATCATTAACT 59.360 40.000 0.00 0.00 0.00 2.24
71 72 5.637810 TCCAAACACGTCTCTCATCATTAAC 59.362 40.000 0.00 0.00 0.00 2.01
72 73 5.789521 TCCAAACACGTCTCTCATCATTAA 58.210 37.500 0.00 0.00 0.00 1.40
73 74 5.047306 ACTCCAAACACGTCTCTCATCATTA 60.047 40.000 0.00 0.00 0.00 1.90
74 75 4.248859 CTCCAAACACGTCTCTCATCATT 58.751 43.478 0.00 0.00 0.00 2.57
75 76 3.259374 ACTCCAAACACGTCTCTCATCAT 59.741 43.478 0.00 0.00 0.00 2.45
76 77 2.628178 ACTCCAAACACGTCTCTCATCA 59.372 45.455 0.00 0.00 0.00 3.07
77 78 3.305398 ACTCCAAACACGTCTCTCATC 57.695 47.619 0.00 0.00 0.00 2.92
78 79 4.038763 TGTTACTCCAAACACGTCTCTCAT 59.961 41.667 0.00 0.00 34.50 2.90
79 80 3.382227 TGTTACTCCAAACACGTCTCTCA 59.618 43.478 0.00 0.00 34.50 3.27
80 81 3.973657 TGTTACTCCAAACACGTCTCTC 58.026 45.455 0.00 0.00 34.50 3.20
81 82 4.602340 ATGTTACTCCAAACACGTCTCT 57.398 40.909 0.00 0.00 41.89 3.10
82 83 6.963049 AATATGTTACTCCAAACACGTCTC 57.037 37.500 0.00 0.00 41.89 3.36
83 84 8.038944 ACATAATATGTTACTCCAAACACGTCT 58.961 33.333 0.00 0.00 41.63 4.18
84 85 8.193250 ACATAATATGTTACTCCAAACACGTC 57.807 34.615 0.00 0.00 41.63 4.34
100 101 9.038803 AGCGCTATGTGATGATAACATAATATG 57.961 33.333 8.99 0.00 39.40 1.78
101 102 9.605275 AAGCGCTATGTGATGATAACATAATAT 57.395 29.630 12.05 0.00 39.40 1.28
102 103 9.087424 GAAGCGCTATGTGATGATAACATAATA 57.913 33.333 12.05 0.00 39.40 0.98
103 104 7.821359 AGAAGCGCTATGTGATGATAACATAAT 59.179 33.333 12.05 0.00 39.40 1.28
104 105 7.154656 AGAAGCGCTATGTGATGATAACATAA 58.845 34.615 12.05 0.00 39.40 1.90
105 106 6.691508 AGAAGCGCTATGTGATGATAACATA 58.308 36.000 12.05 2.75 39.05 2.29
106 107 5.545588 AGAAGCGCTATGTGATGATAACAT 58.454 37.500 12.05 0.33 41.14 2.71
107 108 4.948847 AGAAGCGCTATGTGATGATAACA 58.051 39.130 12.05 0.00 0.00 2.41
108 109 4.984785 TGAGAAGCGCTATGTGATGATAAC 59.015 41.667 12.05 0.00 0.00 1.89
109 110 5.200368 TGAGAAGCGCTATGTGATGATAA 57.800 39.130 12.05 0.00 0.00 1.75
110 111 4.853924 TGAGAAGCGCTATGTGATGATA 57.146 40.909 12.05 0.00 0.00 2.15
111 112 3.740631 TGAGAAGCGCTATGTGATGAT 57.259 42.857 12.05 0.00 0.00 2.45
112 113 3.131046 TCTTGAGAAGCGCTATGTGATGA 59.869 43.478 12.05 1.18 0.00 2.92
113 114 3.451526 TCTTGAGAAGCGCTATGTGATG 58.548 45.455 12.05 0.00 0.00 3.07
114 115 3.808466 TCTTGAGAAGCGCTATGTGAT 57.192 42.857 12.05 0.00 0.00 3.06
115 116 3.592898 TTCTTGAGAAGCGCTATGTGA 57.407 42.857 12.05 1.67 0.00 3.58
116 117 4.093998 ACATTTCTTGAGAAGCGCTATGTG 59.906 41.667 12.05 0.00 32.46 3.21
117 118 4.256920 ACATTTCTTGAGAAGCGCTATGT 58.743 39.130 12.05 10.82 35.21 2.29
118 119 4.871993 ACATTTCTTGAGAAGCGCTATG 57.128 40.909 12.05 10.08 35.21 2.23
119 120 6.595716 ACTTAACATTTCTTGAGAAGCGCTAT 59.404 34.615 12.05 1.33 35.21 2.97
120 121 5.932303 ACTTAACATTTCTTGAGAAGCGCTA 59.068 36.000 12.05 0.00 35.21 4.26
121 122 4.757149 ACTTAACATTTCTTGAGAAGCGCT 59.243 37.500 2.64 2.64 35.21 5.92
122 123 5.035784 ACTTAACATTTCTTGAGAAGCGC 57.964 39.130 0.00 0.00 35.21 5.92
123 124 6.473397 AGACTTAACATTTCTTGAGAAGCG 57.527 37.500 0.00 0.00 35.21 4.68
141 142 9.627123 TGGTTGCATTTATTAGCTTATAGACTT 57.373 29.630 0.00 0.00 0.00 3.01
142 143 9.799106 ATGGTTGCATTTATTAGCTTATAGACT 57.201 29.630 0.00 0.00 0.00 3.24
187 188 9.804758 GTTACTATCTTCATAGTGCTAAGTGTT 57.195 33.333 5.12 0.00 44.33 3.32
188 189 8.967918 TGTTACTATCTTCATAGTGCTAAGTGT 58.032 33.333 5.12 0.00 44.33 3.55
189 190 9.973450 ATGTTACTATCTTCATAGTGCTAAGTG 57.027 33.333 5.12 0.00 44.33 3.16
211 212 8.962884 TCATGCATATGACACTAGTTTATGTT 57.037 30.769 6.97 0.00 38.37 2.71
220 221 8.870075 AGACTAGTATCATGCATATGACACTA 57.130 34.615 6.97 7.92 46.40 2.74
222 223 9.566530 CTTAGACTAGTATCATGCATATGACAC 57.433 37.037 6.97 0.00 45.54 3.67
223 224 9.301897 ACTTAGACTAGTATCATGCATATGACA 57.698 33.333 6.97 4.57 45.54 3.58
230 231 8.585881 GGGAATAACTTAGACTAGTATCATGCA 58.414 37.037 0.00 0.00 0.00 3.96
231 232 8.035984 GGGGAATAACTTAGACTAGTATCATGC 58.964 40.741 0.00 0.00 0.00 4.06
232 233 9.090103 TGGGGAATAACTTAGACTAGTATCATG 57.910 37.037 0.00 0.00 0.00 3.07
233 234 9.091220 GTGGGGAATAACTTAGACTAGTATCAT 57.909 37.037 0.00 0.00 0.00 2.45
234 235 8.287350 AGTGGGGAATAACTTAGACTAGTATCA 58.713 37.037 0.00 0.00 0.00 2.15
235 236 8.709272 AGTGGGGAATAACTTAGACTAGTATC 57.291 38.462 0.00 0.00 0.00 2.24
237 238 9.584008 CATAGTGGGGAATAACTTAGACTAGTA 57.416 37.037 0.00 0.00 0.00 1.82
238 239 8.287350 TCATAGTGGGGAATAACTTAGACTAGT 58.713 37.037 0.00 0.00 0.00 2.57
239 240 8.578151 GTCATAGTGGGGAATAACTTAGACTAG 58.422 40.741 0.00 0.00 31.58 2.57
240 241 7.508296 GGTCATAGTGGGGAATAACTTAGACTA 59.492 40.741 0.00 0.00 33.27 2.59
241 242 6.326843 GGTCATAGTGGGGAATAACTTAGACT 59.673 42.308 0.00 0.00 33.27 3.24
242 243 6.099269 TGGTCATAGTGGGGAATAACTTAGAC 59.901 42.308 0.00 0.00 32.58 2.59
243 244 6.206787 TGGTCATAGTGGGGAATAACTTAGA 58.793 40.000 0.00 0.00 0.00 2.10
244 245 6.099845 ACTGGTCATAGTGGGGAATAACTTAG 59.900 42.308 0.00 0.00 0.00 2.18
245 246 5.968167 ACTGGTCATAGTGGGGAATAACTTA 59.032 40.000 0.00 0.00 0.00 2.24
246 247 4.788617 ACTGGTCATAGTGGGGAATAACTT 59.211 41.667 0.00 0.00 0.00 2.66
247 248 4.371681 ACTGGTCATAGTGGGGAATAACT 58.628 43.478 0.00 0.00 0.00 2.24
248 249 4.409247 AGACTGGTCATAGTGGGGAATAAC 59.591 45.833 3.51 0.00 0.00 1.89
249 250 4.631234 AGACTGGTCATAGTGGGGAATAA 58.369 43.478 3.51 0.00 0.00 1.40
250 251 4.280789 AGACTGGTCATAGTGGGGAATA 57.719 45.455 3.51 0.00 0.00 1.75
251 252 3.136641 AGACTGGTCATAGTGGGGAAT 57.863 47.619 3.51 0.00 0.00 3.01
252 253 2.642171 AGACTGGTCATAGTGGGGAA 57.358 50.000 3.51 0.00 0.00 3.97
253 254 3.769189 TTAGACTGGTCATAGTGGGGA 57.231 47.619 3.51 0.00 0.00 4.81
254 255 3.711704 ACATTAGACTGGTCATAGTGGGG 59.288 47.826 3.51 0.00 0.00 4.96
255 256 4.443457 CCACATTAGACTGGTCATAGTGGG 60.443 50.000 18.06 10.01 37.12 4.61
256 257 4.162320 ACCACATTAGACTGGTCATAGTGG 59.838 45.833 21.25 21.25 41.65 4.00
257 258 5.344743 ACCACATTAGACTGGTCATAGTG 57.655 43.478 3.51 6.20 35.80 2.74
258 259 5.734720 CAACCACATTAGACTGGTCATAGT 58.265 41.667 3.51 0.00 40.06 2.12
259 260 4.572389 GCAACCACATTAGACTGGTCATAG 59.428 45.833 3.51 0.00 40.06 2.23
260 261 4.225042 AGCAACCACATTAGACTGGTCATA 59.775 41.667 3.51 0.00 40.06 2.15
261 262 3.009473 AGCAACCACATTAGACTGGTCAT 59.991 43.478 3.51 0.00 40.06 3.06
262 263 2.371841 AGCAACCACATTAGACTGGTCA 59.628 45.455 3.51 0.00 40.06 4.02
263 264 3.059352 AGCAACCACATTAGACTGGTC 57.941 47.619 0.00 0.00 40.06 4.02
264 265 3.508845 AAGCAACCACATTAGACTGGT 57.491 42.857 0.00 0.00 42.97 4.00
265 266 4.853924 AAAAGCAACCACATTAGACTGG 57.146 40.909 0.00 0.00 0.00 4.00
284 285 5.881923 ACGGAGGGAGTATATAGCAAAAA 57.118 39.130 0.00 0.00 0.00 1.94
285 286 5.881923 AACGGAGGGAGTATATAGCAAAA 57.118 39.130 0.00 0.00 0.00 2.44
286 287 5.601313 AGAAACGGAGGGAGTATATAGCAAA 59.399 40.000 0.00 0.00 0.00 3.68
287 288 5.145564 AGAAACGGAGGGAGTATATAGCAA 58.854 41.667 0.00 0.00 0.00 3.91
288 289 4.737578 AGAAACGGAGGGAGTATATAGCA 58.262 43.478 0.00 0.00 0.00 3.49
289 290 5.725325 AAGAAACGGAGGGAGTATATAGC 57.275 43.478 0.00 0.00 0.00 2.97
290 291 9.473640 GTAAAAAGAAACGGAGGGAGTATATAG 57.526 37.037 0.00 0.00 0.00 1.31
291 292 9.205513 AGTAAAAAGAAACGGAGGGAGTATATA 57.794 33.333 0.00 0.00 0.00 0.86
292 293 8.087303 AGTAAAAAGAAACGGAGGGAGTATAT 57.913 34.615 0.00 0.00 0.00 0.86
293 294 7.364144 GGAGTAAAAAGAAACGGAGGGAGTATA 60.364 40.741 0.00 0.00 0.00 1.47
294 295 6.370186 AGTAAAAAGAAACGGAGGGAGTAT 57.630 37.500 0.00 0.00 0.00 2.12
295 296 5.279657 GGAGTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
296 297 4.504514 GGAGTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
297 298 4.001652 GGAGTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
298 299 3.555586 CGGAGTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
299 300 2.740447 CGGAGTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
300 301 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
301 302 2.803956 TGCGGAGTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
302 303 2.836262 TGCGGAGTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
303 304 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
304 305 7.902032 TCTTATATGCGGAGTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
308 309 8.836413 CCAAATCTTATATGCGGAGTAAAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
309 310 8.621286 ACCAAATCTTATATGCGGAGTAAAAAG 58.379 33.333 0.00 0.00 0.00 2.27
310 311 8.514330 ACCAAATCTTATATGCGGAGTAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
311 312 7.771361 TGACCAAATCTTATATGCGGAGTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
312 313 7.276658 TGACCAAATCTTATATGCGGAGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
313 314 6.822442 TGACCAAATCTTATATGCGGAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
314 315 6.413783 TGACCAAATCTTATATGCGGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
315 316 5.290493 TGACCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
316 317 6.260936 ACTTTGACCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
317 318 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
318 319 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
319 320 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
320 321 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
324 325 9.349713 TGTAGTTTGACTTTGACCAAATCTTAT 57.650 29.630 0.00 0.00 35.14 1.73
325 326 8.617809 GTGTAGTTTGACTTTGACCAAATCTTA 58.382 33.333 0.00 0.00 35.14 2.10
326 327 7.122055 TGTGTAGTTTGACTTTGACCAAATCTT 59.878 33.333 0.00 0.00 35.14 2.40
327 328 6.601613 TGTGTAGTTTGACTTTGACCAAATCT 59.398 34.615 0.00 0.00 35.14 2.40
328 329 6.791303 TGTGTAGTTTGACTTTGACCAAATC 58.209 36.000 0.00 0.00 35.14 2.17
329 330 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
330 331 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
331 332 6.576662 TTTGTGTAGTTTGACTTTGACCAA 57.423 33.333 0.00 0.00 0.00 3.67
332 333 6.576662 TTTTGTGTAGTTTGACTTTGACCA 57.423 33.333 0.00 0.00 0.00 4.02
333 334 8.379902 CAAATTTTGTGTAGTTTGACTTTGACC 58.620 33.333 0.78 0.00 34.38 4.02
334 335 9.134734 TCAAATTTTGTGTAGTTTGACTTTGAC 57.865 29.630 8.89 0.00 36.11 3.18
341 342 9.442047 AATTTGGTCAAATTTTGTGTAGTTTGA 57.558 25.926 13.92 0.00 45.67 2.69
407 408 8.342634 GCACCACGAAATGTATTTTCATACTAT 58.657 33.333 0.00 0.00 43.32 2.12
408 409 7.334671 TGCACCACGAAATGTATTTTCATACTA 59.665 33.333 0.00 0.00 43.32 1.82
409 410 6.150307 TGCACCACGAAATGTATTTTCATACT 59.850 34.615 0.00 0.00 43.32 2.12
410 411 6.318628 TGCACCACGAAATGTATTTTCATAC 58.681 36.000 0.00 0.00 43.32 2.39
411 412 6.502136 TGCACCACGAAATGTATTTTCATA 57.498 33.333 0.00 0.00 43.32 2.15
412 413 5.384063 TGCACCACGAAATGTATTTTCAT 57.616 34.783 0.00 0.00 43.32 2.57
413 414 4.837896 TGCACCACGAAATGTATTTTCA 57.162 36.364 0.00 0.00 43.32 2.69
414 415 5.512788 CAGATGCACCACGAAATGTATTTTC 59.487 40.000 0.00 0.00 40.34 2.29
415 416 5.182950 TCAGATGCACCACGAAATGTATTTT 59.817 36.000 0.00 0.00 0.00 1.82
416 417 4.699735 TCAGATGCACCACGAAATGTATTT 59.300 37.500 0.00 0.00 0.00 1.40
417 418 4.260985 TCAGATGCACCACGAAATGTATT 58.739 39.130 0.00 0.00 0.00 1.89
418 419 3.872696 TCAGATGCACCACGAAATGTAT 58.127 40.909 0.00 0.00 0.00 2.29
419 420 3.326836 TCAGATGCACCACGAAATGTA 57.673 42.857 0.00 0.00 0.00 2.29
420 421 2.183478 TCAGATGCACCACGAAATGT 57.817 45.000 0.00 0.00 0.00 2.71
421 422 4.591202 GTTATCAGATGCACCACGAAATG 58.409 43.478 0.00 0.00 0.00 2.32
422 423 3.309682 CGTTATCAGATGCACCACGAAAT 59.690 43.478 0.00 0.00 0.00 2.17
423 424 2.670905 CGTTATCAGATGCACCACGAAA 59.329 45.455 0.00 0.00 0.00 3.46
424 425 2.267426 CGTTATCAGATGCACCACGAA 58.733 47.619 0.00 0.00 0.00 3.85
425 426 1.203758 ACGTTATCAGATGCACCACGA 59.796 47.619 0.00 0.00 0.00 4.35
426 427 1.640428 ACGTTATCAGATGCACCACG 58.360 50.000 0.00 0.00 0.00 4.94
427 428 3.000041 TCAACGTTATCAGATGCACCAC 59.000 45.455 0.00 0.00 0.00 4.16
428 429 3.326836 TCAACGTTATCAGATGCACCA 57.673 42.857 0.00 0.00 0.00 4.17
429 430 4.882671 AATCAACGTTATCAGATGCACC 57.117 40.909 0.00 0.00 0.00 5.01
430 431 5.868257 TGAAATCAACGTTATCAGATGCAC 58.132 37.500 0.00 0.00 0.00 4.57
431 432 6.682423 ATGAAATCAACGTTATCAGATGCA 57.318 33.333 0.00 2.94 0.00 3.96
432 433 9.110617 CAATATGAAATCAACGTTATCAGATGC 57.889 33.333 0.00 0.00 0.00 3.91
435 436 9.377312 TGACAATATGAAATCAACGTTATCAGA 57.623 29.630 0.00 1.50 0.00 3.27
436 437 9.986833 TTGACAATATGAAATCAACGTTATCAG 57.013 29.630 0.00 0.00 0.00 2.90
441 442 9.474920 AAACATTGACAATATGAAATCAACGTT 57.525 25.926 0.00 0.00 38.65 3.99
480 481 9.780186 AGCTTTGTAAAGTTTGACTAACTCTAT 57.220 29.630 2.71 0.00 46.34 1.98
481 482 9.609346 AAGCTTTGTAAAGTTTGACTAACTCTA 57.391 29.630 2.71 0.00 46.34 2.43
482 483 8.507524 AAGCTTTGTAAAGTTTGACTAACTCT 57.492 30.769 2.71 0.00 46.34 3.24
485 486 9.999009 AGTTAAGCTTTGTAAAGTTTGACTAAC 57.001 29.630 21.17 14.57 46.37 2.34
521 522 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
522 523 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
523 524 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
524 525 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
525 526 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
526 527 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
527 528 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
528 529 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
529 530 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
530 531 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
531 532 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
532 533 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
533 534 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
534 535 7.554211 AGTATACTCCCTCCGTTTCTTTTTAG 58.446 38.462 0.00 0.00 0.00 1.85
535 536 7.486407 AGTATACTCCCTCCGTTTCTTTTTA 57.514 36.000 0.00 0.00 0.00 1.52
536 537 6.370186 AGTATACTCCCTCCGTTTCTTTTT 57.630 37.500 0.00 0.00 0.00 1.94
537 538 5.975282 GAGTATACTCCCTCCGTTTCTTTT 58.025 41.667 20.40 0.00 37.02 2.27
538 539 5.595257 GAGTATACTCCCTCCGTTTCTTT 57.405 43.478 20.40 0.00 37.02 2.52
652 766 1.676014 GCAAGATTGCGTACCTGACCT 60.676 52.381 1.16 0.00 45.11 3.85
710 824 4.156739 CCTAAAGACTGGATCCTTTGTTGC 59.843 45.833 14.23 0.00 34.74 4.17
739 857 9.227490 GTTTGCACGCAGTATATATATAGAGAG 57.773 37.037 2.53 3.76 41.61 3.20
740 858 8.736244 TGTTTGCACGCAGTATATATATAGAGA 58.264 33.333 2.53 0.00 41.61 3.10
741 859 8.911247 TGTTTGCACGCAGTATATATATAGAG 57.089 34.615 2.53 0.70 41.61 2.43
742 860 8.520351 ACTGTTTGCACGCAGTATATATATAGA 58.480 33.333 17.66 0.00 41.61 1.98
743 861 8.587111 CACTGTTTGCACGCAGTATATATATAG 58.413 37.037 18.42 3.78 43.27 1.31
744 862 7.544217 CCACTGTTTGCACGCAGTATATATATA 59.456 37.037 18.42 0.00 43.27 0.86
745 863 6.368791 CCACTGTTTGCACGCAGTATATATAT 59.631 38.462 18.42 0.00 43.27 0.86
746 864 5.694458 CCACTGTTTGCACGCAGTATATATA 59.306 40.000 18.42 0.00 43.27 0.86
758 876 1.656441 CTGCTCCCACTGTTTGCAC 59.344 57.895 0.00 0.00 0.00 4.57
763 881 0.035630 GATCTGCTGCTCCCACTGTT 60.036 55.000 0.00 0.00 0.00 3.16
819 953 0.384725 CGCAGTTTGCCTGTTTCTCG 60.385 55.000 0.00 0.00 43.55 4.04
876 1021 4.878968 TCCAGTCATCCAGTACCAGATAA 58.121 43.478 0.00 0.00 0.00 1.75
930 1075 3.424859 TCCGCGTCATCGTCGTCA 61.425 61.111 4.92 0.00 39.49 4.35
1377 2964 2.047179 AAAGAGAAGGTCCGGCGC 60.047 61.111 0.00 0.00 0.00 6.53
1404 2991 1.272490 TGAAACCTCCACTCGCAGTAG 59.728 52.381 0.00 0.00 0.00 2.57
1470 3057 3.310860 AACCCATCCGTCCAGCGTC 62.311 63.158 0.00 0.00 39.32 5.19
1782 3377 0.251121 TGGTGGTGCGATTGATGGTT 60.251 50.000 0.00 0.00 0.00 3.67
1848 3446 4.202202 CCAGCTAGTTCCTACATCCAGAAG 60.202 50.000 0.00 0.00 0.00 2.85
1884 3486 4.371786 ACAGACATAGTATCCATTGCGTG 58.628 43.478 0.00 0.00 0.00 5.34
2001 3615 3.318275 TCGATATCTCGGAGTTTTCTGGG 59.682 47.826 4.69 0.00 45.10 4.45
2119 3733 4.703899 TTTCTTTTCTGTAGCGACGAAC 57.296 40.909 0.00 0.00 0.00 3.95
2262 3915 1.929836 GACAATGAACCTCTAGCTGCG 59.070 52.381 0.00 0.00 0.00 5.18
2292 3945 5.510690 GGATGGAAACCGACCAAAATTCTTT 60.511 40.000 0.00 0.00 40.93 2.52
2435 4105 5.718146 TCTGCAATTGAACTGAACACAAAA 58.282 33.333 10.34 0.00 0.00 2.44
2437 4107 4.979943 TCTGCAATTGAACTGAACACAA 57.020 36.364 10.34 0.00 0.00 3.33
2599 4269 1.688197 CCATTTGAGGCCAACACAACT 59.312 47.619 5.01 0.00 30.88 3.16
2620 4290 3.225104 TCTGCATCTGCCTTTTTCTGTT 58.775 40.909 0.00 0.00 41.18 3.16
2621 4291 2.867624 TCTGCATCTGCCTTTTTCTGT 58.132 42.857 0.00 0.00 41.18 3.41
2639 4309 5.654209 GGAGATGGTTCATTAGCCTTTTTCT 59.346 40.000 0.00 0.00 0.00 2.52
2642 4312 4.017130 AGGGAGATGGTTCATTAGCCTTTT 60.017 41.667 0.00 0.00 0.00 2.27
2643 4313 3.529319 AGGGAGATGGTTCATTAGCCTTT 59.471 43.478 0.00 0.00 0.00 3.11
2657 7043 8.970859 AAAGTAGAATGAATGTTAGGGAGATG 57.029 34.615 0.00 0.00 0.00 2.90
2708 7094 7.420800 GTGGTTGATGTCTGAATCAATTATCC 58.579 38.462 14.08 11.85 45.66 2.59
2711 7097 6.244654 TGGTGGTTGATGTCTGAATCAATTA 58.755 36.000 14.08 7.48 45.66 1.40
2723 7109 1.140312 AGGTGTCTGGTGGTTGATGT 58.860 50.000 0.00 0.00 0.00 3.06
2738 7124 7.872483 GGCCAAATTTAATGATGGTATAAGGTG 59.128 37.037 0.00 0.00 35.34 4.00
2739 7125 7.789349 AGGCCAAATTTAATGATGGTATAAGGT 59.211 33.333 5.01 0.00 35.34 3.50
2740 7126 8.090214 CAGGCCAAATTTAATGATGGTATAAGG 58.910 37.037 5.01 0.00 35.34 2.69
2764 7150 3.376234 CAGTATGTGCCTGGAAATGTCAG 59.624 47.826 0.00 0.00 0.00 3.51
2765 7151 3.346315 CAGTATGTGCCTGGAAATGTCA 58.654 45.455 0.00 0.00 0.00 3.58
2807 7199 7.446769 TCAACAACATACATAGTAGTGTGGTT 58.553 34.615 0.00 0.00 38.82 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.