AutoCloner

Multiple sequence alignment - TraesCS3A01G401000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G401000	chr3A	100.000	2519	0	0	1	2519	647389304	647386786	0.000000e+00	4652
1	TraesCS3A01G401000	chr3A	85.790	1506	151	32	424	1900	647359161	647357690	0.000000e+00	1537
2	TraesCS3A01G401000	chr3A	87.488	1007	99	19	540	1530	647444181	647443186	0.000000e+00	1136
3	TraesCS3A01G401000	chr3A	92.982	456	27	2	2065	2517	647269498	647269045	0.000000e+00	660
4	TraesCS3A01G401000	chr3A	91.595	464	39	0	1	464	647360226	647359763	2.110000e-180	641
5	TraesCS3A01G401000	chr3A	90.372	457	32	7	2065	2519	647353009	647352563	7.760000e-165	590
6	TraesCS3A01G401000	chr3A	94.444	180	10	0	1895	2074	647353223	647353044	6.860000e-71	278
7	TraesCS3A01G401000	chr3A	93.878	49	3	0	2001	2049	647269617	647269569	9.660000e-10	75
8	TraesCS3A01G401000	chr3D	85.462	1472	153	27	621	2074	511266254	511264826	0.000000e+00	1476
9	TraesCS3A01G401000	chr3D	84.482	1437	157	39	407	1811	511262337	511260935	0.000000e+00	1358
10	TraesCS3A01G401000	chr3D	84.262	1220	155	25	417	1613	511293654	511292449	0.000000e+00	1155
11	TraesCS3A01G401000	chr3D	82.146	1305	175	35	444	1719	511129178	511127903	0.000000e+00	1066
12	TraesCS3A01G401000	chr3D	82.852	1213	152	33	424	1613	511321479	511320300	0.000000e+00	1037
13	TraesCS3A01G401000	chr3D	93.668	458	23	3	2065	2519	511291432	511290978	0.000000e+00	680
14	TraesCS3A01G401000	chr3D	93.450	458	22	4	2065	2519	511319867	511319415	0.000000e+00	673
15	TraesCS3A01G401000	chr3D	93.072	433	24	3	75	506	510754436	510754009	1.640000e-176	628
16	TraesCS3A01G401000	chr3D	90.789	456	31	6	2065	2519	511264800	511264355	1.290000e-167	599
17	TraesCS3A01G401000	chr3D	89.978	449	28	9	2084	2519	511260557	511260113	4.700000e-157	564
18	TraesCS3A01G401000	chr3D	93.333	330	22	0	19	348	510913084	510912755	2.910000e-134	488
19	TraesCS3A01G401000	chr3D	94.118	238	14	0	19	256	510908833	510908596	1.840000e-96	363
20	TraesCS3A01G401000	chr3D	91.204	216	15	1	248	459	510908186	510907971	8.810000e-75	291
21	TraesCS3A01G401000	chr3D	85.043	234	22	4	2186	2406	511200663	511200430	2.520000e-55	226
22	TraesCS3A01G401000	chr3D	94.495	109	6	0	1966	2074	511260855	511260747	4.310000e-38	169
23	TraesCS3A01G401000	chr3B	82.567	1457	179	48	646	2061	672744788	672743366	0.000000e+00	1214
24	TraesCS3A01G401000	chr3B	84.515	1001	135	17	372	1364	672659806	672658818	0.000000e+00	972
25	TraesCS3A01G401000	chr3B	80.613	1305	203	42	353	1635	672777279	672776003	0.000000e+00	963
26	TraesCS3A01G401000	chr3B	82.249	1076	145	33	574	1632	672517363	672516317	0.000000e+00	887
27	TraesCS3A01G401000	chr3B	87.568	732	66	14	1357	2074	672655231	672654511	0.000000e+00	824
28	TraesCS3A01G401000	chr3B	93.043	460	27	4	2065	2519	672636105	672635646	0.000000e+00	667
29	TraesCS3A01G401000	chr3B	92.375	459	30	3	2065	2519	672646363	672645906	0.000000e+00	649
30	TraesCS3A01G401000	chr3B	89.933	447	40	2	23	464	672517813	672517367	2.810000e-159	571
31	TraesCS3A01G401000	chr3B	93.103	348	24	0	1	348	672676750	672676403	6.220000e-141	510
32	TraesCS3A01G401000	chr3B	94.074	270	15	1	2065	2333	672654458	672654189	2.330000e-110	409
33	TraesCS3A01G401000	chr3B	94.902	255	11	2	2065	2317	672653293	672653039	5.050000e-107	398
34	TraesCS3A01G401000	chr3B	95.506	178	8	0	19	196	672575405	672575228	4.100000e-73	285
35	TraesCS3A01G401000	chr3B	90.045	221	19	3	185	403	672563936	672563717	1.480000e-72	283
36	TraesCS3A01G401000	chr3B	77.404	416	42	24	1428	1816	672541594	672541204	1.530000e-47	200
37	TraesCS3A01G401000	chr3B	83.529	170	16	5	1898	2061	672764006	672763843	5.610000e-32	148
38	TraesCS3A01G401000	chr3B	78.500	200	22	8	1630	1816	672502486	672502295	7.370000e-21	111
39	TraesCS3A01G401000	chr3B	91.228	57	2	2	563	618	672744840	672744786	9.660000e-10	75

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G401000	chr3A	647386786	647389304	2518	True	4652.000000	4652	100.00000	1	2519	1	chr3A.!!$R1	2518
1	TraesCS3A01G401000	chr3A	647443186	647444181	995	True	1136.000000	1136	87.48800	540	1530	1	chr3A.!!$R2	990
2	TraesCS3A01G401000	chr3A	647357690	647360226	2536	True	1089.000000	1537	88.69250	1	1900	2	chr3A.!!$R5	1899
3	TraesCS3A01G401000	chr3A	647352563	647353223	660	True	434.000000	590	92.40800	1895	2519	2	chr3A.!!$R4	624
4	TraesCS3A01G401000	chr3A	647269045	647269617	572	True	367.500000	660	93.43000	2001	2517	2	chr3A.!!$R3	516
5	TraesCS3A01G401000	chr3D	511127903	511129178	1275	True	1066.000000	1066	82.14600	444	1719	1	chr3D.!!$R2	1275
6	TraesCS3A01G401000	chr3D	511290978	511293654	2676	True	917.500000	1155	88.96500	417	2519	2	chr3D.!!$R6	2102
7	TraesCS3A01G401000	chr3D	511319415	511321479	2064	True	855.000000	1037	88.15100	424	2519	2	chr3D.!!$R7	2095
8	TraesCS3A01G401000	chr3D	511260113	511266254	6141	True	833.200000	1476	89.04120	407	2519	5	chr3D.!!$R5	2112
9	TraesCS3A01G401000	chr3D	510907971	510913084	5113	True	380.666667	488	92.88500	19	459	3	chr3D.!!$R4	440
10	TraesCS3A01G401000	chr3B	672776003	672777279	1276	True	963.000000	963	80.61300	353	1635	1	chr3B.!!$R9	1282
11	TraesCS3A01G401000	chr3B	672516317	672517813	1496	True	729.000000	887	86.09100	23	1632	2	chr3B.!!$R10	1609
12	TraesCS3A01G401000	chr3B	672653039	672659806	6767	True	650.750000	972	90.26475	372	2333	4	chr3B.!!$R11	1961
13	TraesCS3A01G401000	chr3B	672743366	672744840	1474	True	644.500000	1214	86.89750	563	2061	2	chr3B.!!$R12	1498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
879	2144	0.035439	ACAATGGCCTCCGTGGTTAG	60.035	55.0	3.32	0.0	38.35	2.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2061	14884	0.179062	GAGACATTCTGCCCATCGCT	60.179	55.0	0.0	0.0	38.78	4.93	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	3.968649	TCCATGCTTTGCCCAATATCAAT	59.031	39.130	0.00	0.00	0.00	2.57
120	121	2.559381	ACTAGGACCAGGAGAAGCAT	57.441	50.000	0.00	0.00	0.00	3.79
289	291	0.105778	GAGTGGGATAGTGAGCTGGC	59.894	60.000	0.00	0.00	0.00	4.85
318	320	3.431415	TCTTCCTTGTGCTAGCTACTCA	58.569	45.455	17.23	7.27	0.00	3.41
337	823	1.210478	CACCCATTCAGTAGGACCTGG	59.790	57.143	3.53	0.00	33.14	4.45
398	896	2.579878	GGTTGCCCCTTTAAGAGCC	58.420	57.895	0.00	0.00	0.00	4.70
402	904	1.002502	GCCCCTTTAAGAGCCGTGT	60.003	57.895	0.00	0.00	0.00	4.49
415	920	1.066143	AGCCGTGTCCCTTCAACTATG	60.066	52.381	0.00	0.00	0.00	2.23
467	972	2.576615	ACTGGTGAGTTTTCTGAAGCC	58.423	47.619	0.00	0.00	0.00	4.35
518	1023	6.058833	TGAAATCAACAAGGCAAGTAGTACA	58.941	36.000	2.52	0.00	0.00	2.90
519	1024	5.941948	AATCAACAAGGCAAGTAGTACAC	57.058	39.130	2.52	0.00	0.00	2.90
521	1026	3.128349	CAACAAGGCAAGTAGTACACGT	58.872	45.455	2.52	0.00	0.00	4.49
542	1054	7.064253	ACACGTGACTTATTTACTTCTTATGGC	59.936	37.037	25.01	0.00	0.00	4.40
618	1134	5.479306	AGCGTGTTCAAGTATCTTACACAT	58.521	37.500	12.72	2.59	39.14	3.21
639	1155	1.873591	GTTTTGATCAGGTGACGCTGT	59.126	47.619	0.00	0.00	0.00	4.40
656	1172	2.485426	GCTGTAATTGACAAGCTGCAGA	59.515	45.455	20.43	0.00	37.70	4.26
678	1943	2.290122	TTAGCGGAGAGAGCAGCTGC	62.290	60.000	31.53	31.53	40.51	5.25
695	1960	1.795286	CTGCTTGTTTCACTCCTCGTC	59.205	52.381	0.00	0.00	0.00	4.20
696	1961	1.149148	GCTTGTTTCACTCCTCGTCC	58.851	55.000	0.00	0.00	0.00	4.79
697	1962	1.270358	GCTTGTTTCACTCCTCGTCCT	60.270	52.381	0.00	0.00	0.00	3.85
698	1963	2.678324	CTTGTTTCACTCCTCGTCCTC	58.322	52.381	0.00	0.00	0.00	3.71
699	1964	0.596577	TGTTTCACTCCTCGTCCTCG	59.403	55.000	0.00	0.00	38.55	4.63
700	1965	0.597072	GTTTCACTCCTCGTCCTCGT	59.403	55.000	0.00	0.00	38.33	4.18
701	1966	1.808945	GTTTCACTCCTCGTCCTCGTA	59.191	52.381	0.00	0.00	38.33	3.43
709	1974	0.586802	CTCGTCCTCGTATGCGATGA	59.413	55.000	6.30	6.73	46.80	2.92
718	1983	4.233005	CTCGTATGCGATGACTGATGATT	58.767	43.478	6.30	0.00	46.80	2.57
755	2020	2.105477	TGTTTCTCCTCTTGAGCAGCTT	59.895	45.455	0.00	0.00	41.18	3.74
795	2060	4.125703	CTGAACAAGATATCCAGTGCCTC	58.874	47.826	0.00	0.00	0.00	4.70
846	2111	2.649331	ACGGTGTACTCAAATCCTCG	57.351	50.000	0.00	0.00	0.00	4.63
861	2126	2.557317	TCCTCGTGGAACTTTGACAAC	58.443	47.619	3.14	0.00	39.87	3.32
864	2129	3.315191	CCTCGTGGAACTTTGACAACAAT	59.685	43.478	0.00	0.00	33.80	2.71
865	2130	4.282068	CTCGTGGAACTTTGACAACAATG	58.718	43.478	0.00	0.00	35.85	2.82
866	2131	3.066064	TCGTGGAACTTTGACAACAATGG	59.934	43.478	0.00	0.00	36.09	3.16
867	2132	3.123050	GTGGAACTTTGACAACAATGGC	58.877	45.455	0.00	0.00	36.09	4.40
868	2133	2.102252	TGGAACTTTGACAACAATGGCC	59.898	45.455	0.00	0.00	36.09	5.36
871	2136	1.963515	ACTTTGACAACAATGGCCTCC	59.036	47.619	3.32	0.00	36.09	4.30
879	2144	0.035439	ACAATGGCCTCCGTGGTTAG	60.035	55.000	3.32	0.00	38.35	2.34
893	2158	3.994392	CGTGGTTAGATATGCCGCTTTAT	59.006	43.478	0.00	0.00	0.00	1.40
959	2224	1.516423	GTCTCGGCAACCTAGGACC	59.484	63.158	17.98	12.73	0.00	4.46
973	2238	0.251341	AGGACCTCAAGGCGCATTTT	60.251	50.000	10.83	0.00	39.32	1.82
975	4164	0.171231	GACCTCAAGGCGCATTTTCC	59.829	55.000	10.83	0.00	39.32	3.13
984	8306	0.603065	GCGCATTTTCCCAAGGTCTT	59.397	50.000	0.30	0.00	0.00	3.01
1014	8402	2.683465	AAGCATGACCGGCCTGGAT	61.683	57.895	18.74	4.87	42.00	3.41
1142	8530	6.903516	TCCCACAGAATATCTCAAACATGAT	58.096	36.000	0.00	0.00	0.00	2.45
1272	8660	6.847567	TGTTATCAGGGCCTATTCCTACTTTA	59.152	38.462	5.28	0.00	32.49	1.85
1274	8662	3.971971	TCAGGGCCTATTCCTACTTTACC	59.028	47.826	5.28	0.00	32.49	2.85
1278	8669	3.133542	GGCCTATTCCTACTTTACCACGT	59.866	47.826	0.00	0.00	0.00	4.49
1314	8708	3.219281	GAACTTTGCTGGTAACCAAGGA	58.781	45.455	0.00	0.00	30.80	3.36
1316	8710	2.092103	ACTTTGCTGGTAACCAAGGACA	60.092	45.455	0.00	0.00	30.80	4.02
1387	12378	1.421410	GGTACGAATCAGGCTGCACG	61.421	60.000	10.34	16.40	0.00	5.34
1486	12488	1.680735	CTTCGTCTGCTCTGAGCCTAT	59.319	52.381	25.61	0.00	41.51	2.57
1530	12532	7.012327	CACCTGTTATTCTGAAACTTTGTCTGA	59.988	37.037	0.00	0.00	0.00	3.27
1727	13970	6.464222	CGTGATTATTATGTACCCTGTCCAT	58.536	40.000	0.00	0.00	0.00	3.41
1728	13971	6.368791	CGTGATTATTATGTACCCTGTCCATG	59.631	42.308	0.00	0.00	0.00	3.66
1733	13976	5.772393	TTATGTACCCTGTCCATGTTTCT	57.228	39.130	0.00	0.00	0.00	2.52
1734	13977	6.877668	TTATGTACCCTGTCCATGTTTCTA	57.122	37.500	0.00	0.00	0.00	2.10
1735	13978	5.772393	ATGTACCCTGTCCATGTTTCTAA	57.228	39.130	0.00	0.00	0.00	2.10
1776	14019	0.610687	GCTCCGGCTAGCCTATGAAT	59.389	55.000	30.55	0.00	36.45	2.57
1982	14564	0.320683	CCGTGTGCCATCAACAGAGA	60.321	55.000	0.00	0.00	0.00	3.10
2019	14842	3.891977	GGAAGCTCCCTTCTTTCAGTTTT	59.108	43.478	3.76	0.00	45.44	2.43
2061	14884	1.145531	CCTGATGCATGGATGGGGTTA	59.854	52.381	2.46	0.00	0.00	2.85
2063	14886	1.251251	GATGCATGGATGGGGTTAGC	58.749	55.000	2.46	0.00	0.00	3.09
2068	15062	0.401738	ATGGATGGGGTTAGCGATGG	59.598	55.000	0.00	0.00	0.00	3.51
2144	15156	1.136891	GCTGCCTTTGTTGGTCTGTTT	59.863	47.619	0.00	0.00	0.00	2.83
2346	15361	1.286553	AGCCCGGTATCAATGGGAAAA	59.713	47.619	0.00	0.00	46.41	2.29
2356	15371	7.447238	CGGTATCAATGGGAAAAGGTAATGTAT	59.553	37.037	0.00	0.00	0.00	2.29
2412	15431	7.004691	ACTGATTAAGCTTTGTTTTAGTCCCT	58.995	34.615	3.20	0.00	0.00	4.20

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	1.533625	GGCAAAGCATGGACACACTA	58.466	50.000	0.00	0.00	0.00	2.74
73	74	7.322664	GCACTTGGATTAATTCAGGATCAAAA	58.677	34.615	12.58	0.00	0.00	2.44
196	197	2.691107	CTTTCTGCGCCGATGCATCG	62.691	60.000	36.28	36.28	45.26	3.84
205	206	0.796927	GTGGTAGAACTTTCTGCGCC	59.203	55.000	4.18	2.72	40.30	6.53
289	291	4.142513	GCTAGCACAAGGAAGAAAGATTGG	60.143	45.833	10.63	0.00	0.00	3.16
318	320	1.584724	CCAGGTCCTACTGAATGGGT	58.415	55.000	0.00	0.00	40.97	4.51
337	823	9.574458	GACTTTTTCTTCAGCTAATTAATTCCC	57.426	33.333	3.39	0.00	0.00	3.97
398	896	1.338674	TGCCATAGTTGAAGGGACACG	60.339	52.381	0.00	0.00	0.00	4.49
402	904	1.668826	ACCTGCCATAGTTGAAGGGA	58.331	50.000	0.00	0.00	33.22	4.20
415	920	1.746991	GCAGAAGCCACTACCTGCC	60.747	63.158	0.00	0.00	44.39	4.85
467	972	6.017605	GCAATACTTCATACACAAGATGAGGG	60.018	42.308	0.00	0.00	35.34	4.30
518	1023	6.255020	CGCCATAAGAAGTAAATAAGTCACGT	59.745	38.462	0.00	0.00	0.00	4.49
519	1024	6.255020	ACGCCATAAGAAGTAAATAAGTCACG	59.745	38.462	0.00	0.00	0.00	4.35
521	1026	7.491372	CAGACGCCATAAGAAGTAAATAAGTCA	59.509	37.037	0.00	0.00	0.00	3.41
538	1050	0.957395	CACCAGAAAGCAGACGCCAT	60.957	55.000	0.00	0.00	39.83	4.40
542	1054	1.871080	AAGACACCAGAAAGCAGACG	58.129	50.000	0.00	0.00	0.00	4.18
618	1134	1.872952	CAGCGTCACCTGATCAAAACA	59.127	47.619	0.00	0.00	34.77	2.83
639	1155	6.324819	GCTAAAATCTGCAGCTTGTCAATTA	58.675	36.000	9.47	0.22	32.46	1.40
656	1172	1.484240	AGCTGCTCTCTCCGCTAAAAT	59.516	47.619	0.00	0.00	0.00	1.82
678	1943	2.678324	GAGGACGAGGAGTGAAACAAG	58.322	52.381	0.00	0.00	41.43	3.16
698	1963	3.366121	GGAATCATCAGTCATCGCATACG	59.634	47.826	0.00	0.00	42.01	3.06
699	1964	4.309933	TGGAATCATCAGTCATCGCATAC	58.690	43.478	0.00	0.00	0.00	2.39
700	1965	4.605640	TGGAATCATCAGTCATCGCATA	57.394	40.909	0.00	0.00	0.00	3.14
701	1966	3.480505	TGGAATCATCAGTCATCGCAT	57.519	42.857	0.00	0.00	0.00	4.73
709	1974	3.848975	AGGAGGAACTTGGAATCATCAGT	59.151	43.478	0.00	0.00	41.55	3.41
718	1983	4.867086	AGAAACAAAAGGAGGAACTTGGA	58.133	39.130	0.00	0.00	41.55	3.53
755	2020	7.773864	TGTTCAGAACTAAAACACAACGATA	57.226	32.000	14.51	0.00	0.00	2.92
795	2060	6.791887	ATCACTGATTGTTGTACAGACTTG	57.208	37.500	0.00	0.00	35.85	3.16
846	2111	3.123050	GCCATTGTTGTCAAAGTTCCAC	58.877	45.455	0.00	0.00	37.11	4.02
861	2126	0.251916	TCTAACCACGGAGGCCATTG	59.748	55.000	5.01	0.00	43.14	2.82
864	2129	1.691976	CATATCTAACCACGGAGGCCA	59.308	52.381	5.01	0.00	43.14	5.36
865	2130	1.608283	GCATATCTAACCACGGAGGCC	60.608	57.143	0.00	0.00	43.14	5.19
866	2131	1.608283	GGCATATCTAACCACGGAGGC	60.608	57.143	0.00	0.00	43.14	4.70
867	2132	1.336887	CGGCATATCTAACCACGGAGG	60.337	57.143	0.00	0.00	45.67	4.30
868	2133	1.935300	GCGGCATATCTAACCACGGAG	60.935	57.143	0.00	0.00	0.00	4.63
871	2136	1.865865	AAGCGGCATATCTAACCACG	58.134	50.000	1.45	0.00	0.00	4.94
879	2144	3.304659	CCACACCAATAAAGCGGCATATC	60.305	47.826	1.45	0.00	0.00	1.63
893	2158	1.327303	GAACCAGCATTCCACACCAA	58.673	50.000	0.00	0.00	0.00	3.67
959	2224	0.602562	TTGGGAAAATGCGCCTTGAG	59.397	50.000	4.18	0.00	0.00	3.02
973	2238	3.754965	CACAATCTTGAAGACCTTGGGA	58.245	45.455	11.82	0.00	0.00	4.37
975	4164	2.886523	TGCACAATCTTGAAGACCTTGG	59.113	45.455	11.82	4.08	0.00	3.61
984	8306	2.229543	GGTCATGCTTGCACAATCTTGA	59.770	45.455	0.00	0.00	0.00	3.02
1046	8434	1.522668	CTGCCGTGAAATGTCCTGAA	58.477	50.000	0.00	0.00	0.00	3.02
1142	8530	6.624297	TGGAGGTTGAGGAGATTCAGATATA	58.376	40.000	0.00	0.00	0.00	0.86
1272	8660	0.107268	AAGCCGGAAACTTACGTGGT	59.893	50.000	5.05	0.00	30.99	4.16
1274	8662	0.437295	CGAAGCCGGAAACTTACGTG	59.563	55.000	5.05	0.00	30.99	4.49
1278	8669	2.825861	AGTTCGAAGCCGGAAACTTA	57.174	45.000	5.05	0.00	31.48	2.24
1387	12378	2.432628	CGACTGGTCGTTGAGCCC	60.433	66.667	14.05	0.00	46.99	5.19
1486	12488	2.469826	GTGAATCATATGCGGACGACA	58.530	47.619	0.00	0.00	0.00	4.35
1530	12532	1.729586	TTGGCCTCCGGAAGCTATAT	58.270	50.000	23.85	0.00	0.00	0.86
1551	12555	0.669318	TTACTGCCGGAAAGTGCTCG	60.669	55.000	17.85	0.00	0.00	5.03
1619	13832	3.476552	TGCTAATTGCCAGGCATACTAC	58.523	45.455	17.09	6.14	38.76	2.73
1681	13917	0.809241	CAGTTGATGCCTCGCCTCTC	60.809	60.000	0.00	0.00	0.00	3.20
1733	13976	6.704050	GCTGCCTTGTTTTTGTTCCTTTATTA	59.296	34.615	0.00	0.00	0.00	0.98
1734	13977	5.527214	GCTGCCTTGTTTTTGTTCCTTTATT	59.473	36.000	0.00	0.00	0.00	1.40
1735	13978	5.056480	GCTGCCTTGTTTTTGTTCCTTTAT	58.944	37.500	0.00	0.00	0.00	1.40
1795	14038	2.223340	CGCATCGAAATGGGGAGAAAAG	60.223	50.000	0.00	0.00	41.01	2.27
1982	14564	3.823304	GAGCTTCCACAGAAACCAATCTT	59.177	43.478	0.00	0.00	0.00	2.40
2019	14842	4.518970	GGCTCTCCACAATAACAGAAAACA	59.481	41.667	0.00	0.00	0.00	2.83
2061	14884	0.179062	GAGACATTCTGCCCATCGCT	60.179	55.000	0.00	0.00	38.78	4.93
2063	14886	1.493950	GCGAGACATTCTGCCCATCG	61.494	60.000	0.00	0.00	0.00	3.84
2068	15062	2.704725	TTTTTGCGAGACATTCTGCC	57.295	45.000	0.00	0.00	0.00	4.85
2144	15156	4.919774	ACACTGTTACCACCCAATGATA	57.080	40.909	0.00	0.00	0.00	2.15
2166	15178	3.818210	ACACGCATATGAGTTGTTTTCCA	59.182	39.130	9.60	0.00	0.00	3.53
2388	15404	7.454260	AGGGACTAAAACAAAGCTTAATCAG	57.546	36.000	0.00	0.00	36.02	2.90
2465	15670	5.010213	GCCATACCACTTTTTGTAAGGTTGA	59.990	40.000	0.00	0.00	33.91	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.