Multiple sequence alignment - TraesCS3A01G400500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G400500 chr3A 100.000 6035 0 0 1 6035 647154194 647148160 0.000000e+00 11145.0
1 TraesCS3A01G400500 chr3A 96.951 164 5 0 1 164 22234721 22234884 5.960000e-70 276.0
2 TraesCS3A01G400500 chr3A 96.319 163 6 0 1 163 9865660 9865822 9.970000e-68 268.0
3 TraesCS3A01G400500 chr3A 95.758 165 7 0 1 165 693489297 693489461 3.590000e-67 267.0
4 TraesCS3A01G400500 chr3B 91.299 1540 95 13 556 2085 672390834 672389324 0.000000e+00 2065.0
5 TraesCS3A01G400500 chr3B 90.155 1422 77 11 2803 4189 672388476 672387083 0.000000e+00 1792.0
6 TraesCS3A01G400500 chr3B 91.298 701 32 5 2104 2802 672389210 672388537 0.000000e+00 929.0
7 TraesCS3A01G400500 chr3B 86.294 715 49 23 4620 5313 672386458 672385772 0.000000e+00 732.0
8 TraesCS3A01G400500 chr3B 88.937 461 35 11 4184 4632 672386989 672386533 6.830000e-154 555.0
9 TraesCS3A01G400500 chr3B 92.157 306 12 3 161 454 672391221 672390916 7.230000e-114 422.0
10 TraesCS3A01G400500 chr3B 86.777 121 13 3 5557 5676 672385541 672385423 1.360000e-26 132.0
11 TraesCS3A01G400500 chr3B 79.060 234 15 20 5768 5993 672385291 672385084 4.910000e-26 130.0
12 TraesCS3A01G400500 chr6B 89.563 1303 95 16 1007 2289 420704651 420705932 0.000000e+00 1615.0
13 TraesCS3A01G400500 chr6B 95.161 62 2 1 445 505 171209474 171209413 4.980000e-16 97.1
14 TraesCS3A01G400500 chr3D 88.800 1250 92 23 1560 2802 510292295 510291087 0.000000e+00 1489.0
15 TraesCS3A01G400500 chr3D 89.056 1133 75 12 3225 4320 510290565 510289445 0.000000e+00 1360.0
16 TraesCS3A01G400500 chr3D 89.168 997 78 9 559 1550 510293348 510292377 0.000000e+00 1216.0
17 TraesCS3A01G400500 chr3D 82.981 993 84 43 4372 5313 510289442 510288484 0.000000e+00 819.0
18 TraesCS3A01G400500 chr3D 83.277 592 26 26 5458 6011 510288364 510287808 1.520000e-130 477.0
19 TraesCS3A01G400500 chr3D 90.286 350 19 11 2802 3147 510291030 510290692 1.540000e-120 444.0
20 TraesCS3A01G400500 chr3D 90.615 309 16 4 157 454 510293742 510293436 1.220000e-106 398.0
21 TraesCS3A01G400500 chr3D 94.326 141 8 0 3709 3849 604112796 604112936 3.660000e-52 217.0
22 TraesCS3A01G400500 chr3D 92.063 63 3 2 453 513 195940832 195940770 3.000000e-13 87.9
23 TraesCS3A01G400500 chr2B 87.359 443 44 7 1425 1867 45915366 45915796 1.170000e-136 497.0
24 TraesCS3A01G400500 chr2B 87.133 443 42 7 1425 1867 773711256 773710829 7.030000e-134 488.0
25 TraesCS3A01G400500 chr2B 86.742 445 40 11 1425 1867 262470217 262469790 1.520000e-130 477.0
26 TraesCS3A01G400500 chr2B 93.617 141 9 0 3709 3849 474903577 474903717 1.700000e-50 211.0
27 TraesCS3A01G400500 chr1A 98.780 164 2 0 1 164 569442000 569442163 5.920000e-75 292.0
28 TraesCS3A01G400500 chr1A 93.617 141 9 0 3709 3849 554462262 554462402 1.700000e-50 211.0
29 TraesCS3A01G400500 chr4A 98.182 165 3 0 1 165 624641709 624641545 7.650000e-74 289.0
30 TraesCS3A01G400500 chr4A 97.561 164 4 0 1 164 467282444 467282607 1.280000e-71 281.0
31 TraesCS3A01G400500 chr1D 97.546 163 4 0 1 163 473040781 473040619 4.610000e-71 279.0
32 TraesCS3A01G400500 chr7A 96.970 165 5 0 1 165 566912931 566912767 1.660000e-70 278.0
33 TraesCS3A01G400500 chr4D 95.679 162 7 0 1 162 304736910 304737071 1.670000e-65 261.0
34 TraesCS3A01G400500 chr4D 94.828 58 1 2 454 510 84292586 84292642 8.330000e-14 89.8
35 TraesCS3A01G400500 chr6D 93.706 143 8 1 3709 3851 45508319 45508178 4.740000e-51 213.0
36 TraesCS3A01G400500 chr5D 93.617 141 9 0 3709 3849 503290559 503290699 1.700000e-50 211.0
37 TraesCS3A01G400500 chr5D 92.908 141 10 0 3709 3849 6177715 6177575 7.930000e-49 206.0
38 TraesCS3A01G400500 chr2D 92.908 141 10 0 3709 3849 638423708 638423848 7.930000e-49 206.0
39 TraesCS3A01G400500 chr2D 93.443 61 1 3 447 504 54963874 54963934 3.000000e-13 87.9
40 TraesCS3A01G400500 chr7B 91.608 143 10 2 3709 3850 699540129 699540270 4.770000e-46 196.0
41 TraesCS3A01G400500 chr7B 93.443 61 2 2 454 512 293148712 293148772 8.330000e-14 89.8
42 TraesCS3A01G400500 chr4B 91.096 146 11 2 3709 3852 308680567 308680422 4.770000e-46 196.0
43 TraesCS3A01G400500 chr1B 92.537 67 3 2 440 504 463525528 463525462 1.790000e-15 95.3
44 TraesCS3A01G400500 chr6A 94.915 59 1 2 448 504 47702982 47702924 2.320000e-14 91.6
45 TraesCS3A01G400500 chr7D 91.935 62 3 2 445 504 318486605 318486544 1.080000e-12 86.1
46 TraesCS3A01G400500 chr7D 91.935 62 3 2 445 504 455216279 455216218 1.080000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G400500 chr3A 647148160 647154194 6034 True 11145.000000 11145 100.000000 1 6035 1 chr3A.!!$R1 6034
1 TraesCS3A01G400500 chr3B 672385084 672391221 6137 True 844.625000 2065 88.247125 161 5993 8 chr3B.!!$R1 5832
2 TraesCS3A01G400500 chr6B 420704651 420705932 1281 False 1615.000000 1615 89.563000 1007 2289 1 chr6B.!!$F1 1282
3 TraesCS3A01G400500 chr3D 510287808 510293742 5934 True 886.142857 1489 87.740429 157 6011 7 chr3D.!!$R2 5854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 902 0.170561 GACCGTATGCTCGTCACTGT 59.829 55.0 0.00 0.00 0.00 3.55 F
1223 1288 0.110823 CACAGTTTAGTTGACGGCGC 60.111 55.0 6.90 0.00 0.00 6.53 F
1535 1600 0.179062 GGAGTCGCTTCCATGAGCAT 60.179 55.0 7.14 0.00 42.83 3.79 F
2049 2221 0.377203 GAACCGTGCGGATGGAAATC 59.623 55.0 23.32 12.63 38.96 2.17 F
3774 4205 0.322187 GTGGCCCATTTCGTACCAGT 60.322 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1892 1.022735 CCATTGGCTAGCTTCAGCAG 58.977 55.000 15.72 0.0 43.67 4.24 R
2297 2567 1.804151 TCTTTCGCCATTTCCTTCACG 59.196 47.619 0.00 0.0 0.00 4.35 R
3403 3818 1.581447 GCACCTGCCAGCTTTACAC 59.419 57.895 0.00 0.0 34.31 2.90 R
3985 4445 1.195115 TCCCCATGTCCTCTTCTTCG 58.805 55.000 0.00 0.0 0.00 3.79 R
5225 5929 0.107703 TCCCGTCTGTGATGCAATCC 60.108 55.000 0.00 0.0 44.73 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.651391 TTCACTCATGAACGTAGAGTTTTTAA 57.349 30.769 9.33 2.27 44.35 1.52
26 27 8.827177 TCACTCATGAACGTAGAGTTTTTAAT 57.173 30.769 9.33 0.00 44.35 1.40
27 28 9.268268 TCACTCATGAACGTAGAGTTTTTAATT 57.732 29.630 9.33 0.00 44.35 1.40
28 29 9.878599 CACTCATGAACGTAGAGTTTTTAATTT 57.121 29.630 9.33 0.00 44.35 1.82
30 31 9.250986 CTCATGAACGTAGAGTTTTTAATTTCG 57.749 33.333 0.00 0.00 44.35 3.46
31 32 8.980610 TCATGAACGTAGAGTTTTTAATTTCGA 58.019 29.630 0.00 0.00 44.35 3.71
32 33 9.588774 CATGAACGTAGAGTTTTTAATTTCGAA 57.411 29.630 0.00 0.00 44.35 3.71
33 34 9.807386 ATGAACGTAGAGTTTTTAATTTCGAAG 57.193 29.630 0.00 0.00 44.35 3.79
34 35 7.795272 TGAACGTAGAGTTTTTAATTTCGAAGC 59.205 33.333 0.00 0.00 44.35 3.86
35 36 7.181143 ACGTAGAGTTTTTAATTTCGAAGCA 57.819 32.000 0.00 0.00 0.00 3.91
36 37 7.067728 ACGTAGAGTTTTTAATTTCGAAGCAC 58.932 34.615 0.00 0.00 0.00 4.40
37 38 7.067116 CGTAGAGTTTTTAATTTCGAAGCACA 58.933 34.615 0.00 0.00 0.00 4.57
38 39 7.744715 CGTAGAGTTTTTAATTTCGAAGCACAT 59.255 33.333 0.00 0.00 0.00 3.21
45 46 8.820628 TTTTAATTTCGAAGCACATAATCTCG 57.179 30.769 0.00 0.00 0.00 4.04
46 47 7.534085 TTAATTTCGAAGCACATAATCTCGT 57.466 32.000 0.00 0.00 0.00 4.18
47 48 5.643339 ATTTCGAAGCACATAATCTCGTC 57.357 39.130 0.00 0.00 0.00 4.20
48 49 3.775661 TCGAAGCACATAATCTCGTCA 57.224 42.857 0.00 0.00 0.00 4.35
49 50 4.104696 TCGAAGCACATAATCTCGTCAA 57.895 40.909 0.00 0.00 0.00 3.18
50 51 4.105486 TCGAAGCACATAATCTCGTCAAG 58.895 43.478 0.00 0.00 0.00 3.02
51 52 3.859961 CGAAGCACATAATCTCGTCAAGT 59.140 43.478 0.00 0.00 0.00 3.16
52 53 4.327357 CGAAGCACATAATCTCGTCAAGTT 59.673 41.667 0.00 0.00 0.00 2.66
53 54 5.163953 CGAAGCACATAATCTCGTCAAGTTT 60.164 40.000 0.00 0.00 0.00 2.66
54 55 5.536554 AGCACATAATCTCGTCAAGTTTG 57.463 39.130 0.00 0.00 0.00 2.93
55 56 4.393062 AGCACATAATCTCGTCAAGTTTGG 59.607 41.667 0.00 0.00 0.00 3.28
56 57 4.154195 GCACATAATCTCGTCAAGTTTGGT 59.846 41.667 0.00 0.00 0.00 3.67
57 58 5.334879 GCACATAATCTCGTCAAGTTTGGTT 60.335 40.000 0.00 0.00 0.00 3.67
58 59 6.079763 CACATAATCTCGTCAAGTTTGGTTG 58.920 40.000 0.00 0.00 0.00 3.77
59 60 5.763204 ACATAATCTCGTCAAGTTTGGTTGT 59.237 36.000 0.00 0.00 0.00 3.32
60 61 6.932400 ACATAATCTCGTCAAGTTTGGTTGTA 59.068 34.615 0.00 0.00 0.00 2.41
61 62 7.442969 ACATAATCTCGTCAAGTTTGGTTGTAA 59.557 33.333 0.00 0.00 0.00 2.41
62 63 6.877611 AATCTCGTCAAGTTTGGTTGTAAT 57.122 33.333 0.00 0.00 0.00 1.89
63 64 6.877611 ATCTCGTCAAGTTTGGTTGTAATT 57.122 33.333 0.00 0.00 0.00 1.40
64 65 6.687081 TCTCGTCAAGTTTGGTTGTAATTT 57.313 33.333 0.00 0.00 0.00 1.82
65 66 7.789273 TCTCGTCAAGTTTGGTTGTAATTTA 57.211 32.000 0.00 0.00 0.00 1.40
66 67 7.857569 TCTCGTCAAGTTTGGTTGTAATTTAG 58.142 34.615 0.00 0.00 0.00 1.85
67 68 6.961576 TCGTCAAGTTTGGTTGTAATTTAGG 58.038 36.000 0.00 0.00 0.00 2.69
68 69 6.543100 TCGTCAAGTTTGGTTGTAATTTAGGT 59.457 34.615 0.00 0.00 0.00 3.08
69 70 6.635239 CGTCAAGTTTGGTTGTAATTTAGGTG 59.365 38.462 0.00 0.00 0.00 4.00
70 71 7.485810 GTCAAGTTTGGTTGTAATTTAGGTGT 58.514 34.615 0.00 0.00 0.00 4.16
71 72 8.623030 GTCAAGTTTGGTTGTAATTTAGGTGTA 58.377 33.333 0.00 0.00 0.00 2.90
72 73 8.842280 TCAAGTTTGGTTGTAATTTAGGTGTAG 58.158 33.333 0.00 0.00 0.00 2.74
73 74 7.754851 AGTTTGGTTGTAATTTAGGTGTAGG 57.245 36.000 0.00 0.00 0.00 3.18
74 75 7.292319 AGTTTGGTTGTAATTTAGGTGTAGGT 58.708 34.615 0.00 0.00 0.00 3.08
75 76 7.446319 AGTTTGGTTGTAATTTAGGTGTAGGTC 59.554 37.037 0.00 0.00 0.00 3.85
76 77 5.481105 TGGTTGTAATTTAGGTGTAGGTCG 58.519 41.667 0.00 0.00 0.00 4.79
77 78 5.011943 TGGTTGTAATTTAGGTGTAGGTCGT 59.988 40.000 0.00 0.00 0.00 4.34
78 79 5.578336 GGTTGTAATTTAGGTGTAGGTCGTC 59.422 44.000 0.00 0.00 0.00 4.20
79 80 5.981088 TGTAATTTAGGTGTAGGTCGTCA 57.019 39.130 0.00 0.00 0.00 4.35
80 81 6.534475 TGTAATTTAGGTGTAGGTCGTCAT 57.466 37.500 0.00 0.00 0.00 3.06
81 82 6.334989 TGTAATTTAGGTGTAGGTCGTCATG 58.665 40.000 0.00 0.00 0.00 3.07
82 83 5.416271 AATTTAGGTGTAGGTCGTCATGT 57.584 39.130 0.00 0.00 0.00 3.21
83 84 4.877378 TTTAGGTGTAGGTCGTCATGTT 57.123 40.909 0.00 0.00 0.00 2.71
84 85 4.877378 TTAGGTGTAGGTCGTCATGTTT 57.123 40.909 0.00 0.00 0.00 2.83
85 86 3.040147 AGGTGTAGGTCGTCATGTTTG 57.960 47.619 0.00 0.00 0.00 2.93
86 87 2.073816 GGTGTAGGTCGTCATGTTTGG 58.926 52.381 0.00 0.00 0.00 3.28
87 88 2.549349 GGTGTAGGTCGTCATGTTTGGT 60.549 50.000 0.00 0.00 0.00 3.67
88 89 3.135994 GTGTAGGTCGTCATGTTTGGTT 58.864 45.455 0.00 0.00 0.00 3.67
89 90 3.059188 GTGTAGGTCGTCATGTTTGGTTG 60.059 47.826 0.00 0.00 0.00 3.77
90 91 1.604604 AGGTCGTCATGTTTGGTTGG 58.395 50.000 0.00 0.00 0.00 3.77
91 92 0.596082 GGTCGTCATGTTTGGTTGGG 59.404 55.000 0.00 0.00 0.00 4.12
92 93 0.596082 GTCGTCATGTTTGGTTGGGG 59.404 55.000 0.00 0.00 0.00 4.96
93 94 0.183971 TCGTCATGTTTGGTTGGGGT 59.816 50.000 0.00 0.00 0.00 4.95
94 95 0.596082 CGTCATGTTTGGTTGGGGTC 59.404 55.000 0.00 0.00 0.00 4.46
95 96 1.817740 CGTCATGTTTGGTTGGGGTCT 60.818 52.381 0.00 0.00 0.00 3.85
96 97 1.886542 GTCATGTTTGGTTGGGGTCTC 59.113 52.381 0.00 0.00 0.00 3.36
97 98 1.203001 TCATGTTTGGTTGGGGTCTCC 60.203 52.381 0.00 0.00 0.00 3.71
98 99 1.158007 ATGTTTGGTTGGGGTCTCCT 58.842 50.000 0.00 0.00 36.20 3.69
99 100 0.476771 TGTTTGGTTGGGGTCTCCTC 59.523 55.000 0.00 0.00 36.20 3.71
100 101 0.476771 GTTTGGTTGGGGTCTCCTCA 59.523 55.000 0.00 0.00 36.20 3.86
101 102 1.075536 GTTTGGTTGGGGTCTCCTCAT 59.924 52.381 0.00 0.00 36.20 2.90
102 103 0.698238 TTGGTTGGGGTCTCCTCATG 59.302 55.000 0.00 0.00 36.20 3.07
103 104 0.178876 TGGTTGGGGTCTCCTCATGA 60.179 55.000 0.00 0.00 36.20 3.07
104 105 0.253327 GGTTGGGGTCTCCTCATGAC 59.747 60.000 0.00 0.00 36.20 3.06
114 115 5.051891 GTCTCCTCATGACCAAAACATTG 57.948 43.478 0.00 0.00 0.00 2.82
115 116 4.520492 GTCTCCTCATGACCAAAACATTGT 59.480 41.667 0.00 0.00 0.00 2.71
116 117 5.705441 GTCTCCTCATGACCAAAACATTGTA 59.295 40.000 0.00 0.00 0.00 2.41
117 118 5.705441 TCTCCTCATGACCAAAACATTGTAC 59.295 40.000 0.00 0.00 0.00 2.90
118 119 4.764823 TCCTCATGACCAAAACATTGTACC 59.235 41.667 0.00 0.00 0.00 3.34
119 120 4.766891 CCTCATGACCAAAACATTGTACCT 59.233 41.667 0.00 0.00 0.00 3.08
120 121 5.243730 CCTCATGACCAAAACATTGTACCTT 59.756 40.000 0.00 0.00 0.00 3.50
121 122 6.239289 CCTCATGACCAAAACATTGTACCTTT 60.239 38.462 0.00 0.00 0.00 3.11
122 123 7.040062 CCTCATGACCAAAACATTGTACCTTTA 60.040 37.037 0.00 0.00 0.00 1.85
123 124 8.239038 TCATGACCAAAACATTGTACCTTTAA 57.761 30.769 0.00 0.00 0.00 1.52
124 125 8.865090 TCATGACCAAAACATTGTACCTTTAAT 58.135 29.630 0.00 0.00 0.00 1.40
125 126 9.487790 CATGACCAAAACATTGTACCTTTAATT 57.512 29.630 0.00 0.00 0.00 1.40
135 136 9.243105 ACATTGTACCTTTAATTATTGAGCAGT 57.757 29.630 0.00 0.00 0.00 4.40
144 145 9.508567 CTTTAATTATTGAGCAGTAAAGAAGGC 57.491 33.333 0.00 0.00 32.70 4.35
145 146 5.741388 ATTATTGAGCAGTAAAGAAGGCG 57.259 39.130 0.00 0.00 0.00 5.52
146 147 2.831685 TTGAGCAGTAAAGAAGGCGA 57.168 45.000 0.00 0.00 0.00 5.54
147 148 2.370281 TGAGCAGTAAAGAAGGCGAG 57.630 50.000 0.00 0.00 0.00 5.03
148 149 1.893137 TGAGCAGTAAAGAAGGCGAGA 59.107 47.619 0.00 0.00 0.00 4.04
149 150 2.497675 TGAGCAGTAAAGAAGGCGAGAT 59.502 45.455 0.00 0.00 0.00 2.75
150 151 3.055819 TGAGCAGTAAAGAAGGCGAGATT 60.056 43.478 0.00 0.00 0.00 2.40
151 152 3.935828 GAGCAGTAAAGAAGGCGAGATTT 59.064 43.478 0.00 0.00 0.00 2.17
152 153 3.935828 AGCAGTAAAGAAGGCGAGATTTC 59.064 43.478 0.00 0.00 0.00 2.17
153 154 3.935828 GCAGTAAAGAAGGCGAGATTTCT 59.064 43.478 0.00 0.00 35.25 2.52
154 155 4.033472 GCAGTAAAGAAGGCGAGATTTCTC 59.967 45.833 0.00 0.00 39.55 2.87
155 156 5.171476 CAGTAAAGAAGGCGAGATTTCTCA 58.829 41.667 8.23 0.00 43.00 3.27
212 213 1.032657 ATCTCTGTAGCCGACACGCT 61.033 55.000 0.00 0.00 43.09 5.07
310 317 2.124942 CCTCAAGCCGCTCCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
392 407 1.949847 GCTAGCTGACCAAGGCGAGA 61.950 60.000 7.70 0.00 34.04 4.04
449 464 4.211374 ACTTTTGAGTGCAGAATCGTGTAC 59.789 41.667 0.00 0.00 33.57 2.90
454 469 1.916000 GTGCAGAATCGTGTACGGTAC 59.084 52.381 11.33 11.33 40.29 3.34
455 470 1.814394 TGCAGAATCGTGTACGGTACT 59.186 47.619 18.32 0.00 40.29 2.73
456 471 3.009026 TGCAGAATCGTGTACGGTACTA 58.991 45.455 18.32 5.61 40.29 1.82
457 472 3.181507 TGCAGAATCGTGTACGGTACTAC 60.182 47.826 18.32 13.26 40.29 2.73
458 473 3.064545 GCAGAATCGTGTACGGTACTACT 59.935 47.826 18.32 6.72 40.29 2.57
459 474 4.784710 GCAGAATCGTGTACGGTACTACTC 60.785 50.000 18.32 8.50 40.29 2.59
460 475 3.873952 AGAATCGTGTACGGTACTACTCC 59.126 47.826 18.32 4.89 40.29 3.85
461 476 2.024176 TCGTGTACGGTACTACTCCC 57.976 55.000 18.32 0.70 40.29 4.30
462 477 1.555075 TCGTGTACGGTACTACTCCCT 59.445 52.381 18.32 0.00 40.29 4.20
463 478 1.936547 CGTGTACGGTACTACTCCCTC 59.063 57.143 18.32 0.00 35.37 4.30
464 479 2.293170 GTGTACGGTACTACTCCCTCC 58.707 57.143 18.32 0.00 0.00 4.30
465 480 1.134401 TGTACGGTACTACTCCCTCCG 60.134 57.143 18.32 0.00 45.53 4.63
466 481 4.972875 CGGTACTACTCCCTCCGT 57.027 61.111 0.00 0.00 36.99 4.69
467 482 3.181526 CGGTACTACTCCCTCCGTT 57.818 57.895 0.00 0.00 36.99 4.44
468 483 1.020437 CGGTACTACTCCCTCCGTTC 58.980 60.000 0.00 0.00 36.99 3.95
469 484 1.397672 GGTACTACTCCCTCCGTTCC 58.602 60.000 0.00 0.00 0.00 3.62
470 485 1.341383 GGTACTACTCCCTCCGTTCCA 60.341 57.143 0.00 0.00 0.00 3.53
471 486 2.450476 GTACTACTCCCTCCGTTCCAA 58.550 52.381 0.00 0.00 0.00 3.53
472 487 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
473 488 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
474 489 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
475 490 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
476 491 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
477 492 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
478 493 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
479 494 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
480 495 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
481 496 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
482 497 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
483 498 4.513442 CTCCGTTCCAAAATAGATGACCA 58.487 43.478 0.00 0.00 0.00 4.02
484 499 4.912586 TCCGTTCCAAAATAGATGACCAA 58.087 39.130 0.00 0.00 0.00 3.67
485 500 4.698304 TCCGTTCCAAAATAGATGACCAAC 59.302 41.667 0.00 0.00 0.00 3.77
486 501 4.700213 CCGTTCCAAAATAGATGACCAACT 59.300 41.667 0.00 0.00 0.00 3.16
487 502 5.183140 CCGTTCCAAAATAGATGACCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
488 503 6.294508 CCGTTCCAAAATAGATGACCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
489 504 6.582295 CGTTCCAAAATAGATGACCAACTTTG 59.418 38.462 0.00 0.00 0.00 2.77
490 505 7.433680 GTTCCAAAATAGATGACCAACTTTGT 58.566 34.615 0.00 0.00 0.00 2.83
491 506 8.573035 GTTCCAAAATAGATGACCAACTTTGTA 58.427 33.333 0.00 0.00 0.00 2.41
492 507 8.106247 TCCAAAATAGATGACCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
493 508 7.942341 TCCAAAATAGATGACCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
494 509 9.226606 CCAAAATAGATGACCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
504 519 9.195411 TGACCAACTTTGTACTAACTTTATACG 57.805 33.333 0.00 0.00 0.00 3.06
505 520 8.538409 ACCAACTTTGTACTAACTTTATACGG 57.462 34.615 0.00 0.00 0.00 4.02
506 521 8.367156 ACCAACTTTGTACTAACTTTATACGGA 58.633 33.333 0.00 0.00 0.00 4.69
507 522 8.866956 CCAACTTTGTACTAACTTTATACGGAG 58.133 37.037 0.00 0.00 0.00 4.63
528 543 0.397187 ATATGCTGCTCTGCCTCTGG 59.603 55.000 0.00 0.00 0.00 3.86
640 694 3.732212 TGTCTCTGTCCATTGTTGTGAG 58.268 45.455 0.00 0.00 0.00 3.51
660 714 3.486383 AGAACTTGGGAAATCGAAGCAA 58.514 40.909 0.00 0.00 35.01 3.91
695 755 7.343057 TCAGAGTCACTCATTCCTAACATATGT 59.657 37.037 7.77 1.41 32.06 2.29
841 902 0.170561 GACCGTATGCTCGTCACTGT 59.829 55.000 0.00 0.00 0.00 3.55
922 984 3.068165 TGTTATACTGCTGGGACTCATCG 59.932 47.826 0.00 0.00 0.00 3.84
1085 1147 3.955471 ACCCAACATCTGTTACCATCAG 58.045 45.455 0.00 0.00 36.32 2.90
1118 1180 5.132502 TCTTGGTAATAATGGCATGTCAGG 58.867 41.667 6.04 0.00 0.00 3.86
1182 1247 0.615827 AAGGGGCTGGATTGGAAAGC 60.616 55.000 0.00 0.00 36.17 3.51
1187 1252 1.549203 GCTGGATTGGAAAGCTTGGA 58.451 50.000 0.00 0.00 34.05 3.53
1221 1286 3.556775 TGTTACACAGTTTAGTTGACGGC 59.443 43.478 0.00 0.00 0.00 5.68
1223 1288 0.110823 CACAGTTTAGTTGACGGCGC 60.111 55.000 6.90 0.00 0.00 6.53
1243 1308 0.762418 TTCTCGGAAAGGAAGGCACA 59.238 50.000 0.00 0.00 0.00 4.57
1267 1332 5.464965 AGTTATTTTACCGTTGCGATCTG 57.535 39.130 0.00 0.00 0.00 2.90
1365 1430 2.428890 GGAGGACGATCAAGACAGACAT 59.571 50.000 0.00 0.00 0.00 3.06
1380 1445 5.473846 AGACAGACATCAAGAGAAAGACGTA 59.526 40.000 0.00 0.00 0.00 3.57
1382 1447 6.326375 ACAGACATCAAGAGAAAGACGTATC 58.674 40.000 0.00 0.00 0.00 2.24
1385 1450 7.490725 CAGACATCAAGAGAAAGACGTATCAAT 59.509 37.037 0.00 0.00 0.00 2.57
1394 1459 6.334202 AGAAAGACGTATCAATGGAAGACTC 58.666 40.000 0.00 0.00 0.00 3.36
1405 1470 2.242926 TGGAAGACTCTGTGGACTCTG 58.757 52.381 0.00 0.00 0.00 3.35
1441 1506 1.330655 TGCCAAAGCCAAACCCGAAA 61.331 50.000 0.00 0.00 38.69 3.46
1446 1511 3.556843 CCAAAGCCAAACCCGAAATGAAT 60.557 43.478 0.00 0.00 0.00 2.57
1461 1526 6.901887 CCGAAATGAATAATCAAGAACAGTCG 59.098 38.462 0.00 0.00 39.49 4.18
1512 1577 2.173519 CCTGTGATTGGTCCTGCAATT 58.826 47.619 0.00 0.00 0.00 2.32
1513 1578 2.094390 CCTGTGATTGGTCCTGCAATTG 60.094 50.000 0.00 0.00 0.00 2.32
1516 1581 3.256383 TGTGATTGGTCCTGCAATTGAAG 59.744 43.478 10.34 8.29 0.00 3.02
1535 1600 0.179062 GGAGTCGCTTCCATGAGCAT 60.179 55.000 7.14 0.00 42.83 3.79
1538 1603 1.482182 AGTCGCTTCCATGAGCATGTA 59.518 47.619 9.39 0.00 42.83 2.29
1540 1605 2.030946 GTCGCTTCCATGAGCATGTAAC 59.969 50.000 9.39 0.00 42.83 2.50
1543 1608 2.954318 GCTTCCATGAGCATGTAACCAT 59.046 45.455 9.39 0.00 42.25 3.55
1565 1702 7.563188 ACCATACATCTAGCTAGCTAATATGCT 59.437 37.037 29.54 22.69 46.11 3.79
1640 1782 4.757149 ACTTGTTCTTAGTGCTGATTGGAC 59.243 41.667 0.00 0.00 37.27 4.02
1684 1826 4.811557 ACAAGAAGGACGAGTTCTTTTCAG 59.188 41.667 0.00 0.00 41.37 3.02
1782 1924 2.646798 AGCCAATGGGAAAAGACTCTCT 59.353 45.455 0.00 0.00 35.59 3.10
1809 1951 4.400961 AGAAGCCAGCTGACCCGC 62.401 66.667 17.39 10.18 0.00 6.13
1818 1960 2.591429 CTGACCCGCACAACTGCA 60.591 61.111 0.00 0.00 44.50 4.41
1911 2053 4.919774 TCTAAGGCTGTTCCCAAACATA 57.080 40.909 0.00 0.00 44.18 2.29
1917 2059 2.890945 GCTGTTCCCAAACATACAACCT 59.109 45.455 0.00 0.00 44.18 3.50
1952 2119 4.878397 GGACAGGATGAAAGAACAGGTATG 59.122 45.833 0.00 0.00 39.69 2.39
1953 2120 4.848357 ACAGGATGAAAGAACAGGTATGG 58.152 43.478 0.00 0.00 39.69 2.74
1954 2121 4.289672 ACAGGATGAAAGAACAGGTATGGT 59.710 41.667 0.00 0.00 39.69 3.55
1955 2122 5.487488 ACAGGATGAAAGAACAGGTATGGTA 59.513 40.000 0.00 0.00 39.69 3.25
1956 2123 6.158695 ACAGGATGAAAGAACAGGTATGGTAT 59.841 38.462 0.00 0.00 39.69 2.73
2049 2221 0.377203 GAACCGTGCGGATGGAAATC 59.623 55.000 23.32 12.63 38.96 2.17
2216 2486 6.579666 AACACCGTGATACTTTACTGTCTA 57.420 37.500 5.28 0.00 0.00 2.59
2255 2525 4.262617 GGTAGGAGGCACTAAAAAGGAAG 58.737 47.826 0.00 0.00 41.55 3.46
2261 2531 4.411013 AGGCACTAAAAAGGAAGCTCAAT 58.589 39.130 0.00 0.00 36.02 2.57
2297 2567 3.674997 TGCCAAGTTTCTACAGGACATC 58.325 45.455 0.00 0.00 0.00 3.06
2312 2582 1.062587 GACATCGTGAAGGAAATGGCG 59.937 52.381 0.00 0.00 0.00 5.69
2335 2605 6.508404 GCGAAAGAAGTGAAGTTTACACGTAA 60.508 38.462 0.17 0.00 42.25 3.18
2410 2680 2.845659 AGACTTCCCCATATGTCACCA 58.154 47.619 1.24 0.00 32.41 4.17
2414 2684 5.431731 AGACTTCCCCATATGTCACCATTTA 59.568 40.000 1.24 0.00 32.29 1.40
2415 2685 6.103205 AGACTTCCCCATATGTCACCATTTAT 59.897 38.462 1.24 0.00 32.29 1.40
2417 2687 6.550854 ACTTCCCCATATGTCACCATTTATTG 59.449 38.462 1.24 0.00 32.29 1.90
2434 2704 9.787532 CCATTTATTGGTTCATGTTTACTACAG 57.212 33.333 0.00 0.00 39.42 2.74
2591 2863 9.082313 CCTTGGATAATATGAGCAGGTTATTTT 57.918 33.333 0.00 0.00 0.00 1.82
2602 2874 7.867752 TGAGCAGGTTATTTTGTTGTACTTAC 58.132 34.615 0.00 0.00 0.00 2.34
2741 3013 4.091365 GGGACAAACAATTATTTGCGCTTC 59.909 41.667 9.73 0.00 42.29 3.86
2759 3031 4.474113 GCTTCATGCTCAGAAGAAAACTG 58.526 43.478 14.64 0.00 44.00 3.16
2773 3045 7.012327 CAGAAGAAAACTGAAATGGTGAGTGTA 59.988 37.037 0.00 0.00 37.54 2.90
2781 3053 8.540507 ACTGAAATGGTGAGTGTATCTATACT 57.459 34.615 2.07 0.00 34.41 2.12
2788 3060 8.990163 TGGTGAGTGTATCTATACTTCACATA 57.010 34.615 23.81 16.22 42.92 2.29
2795 3067 9.982651 GTGTATCTATACTTCACATAACATGGT 57.017 33.333 0.00 0.00 34.41 3.55
2823 3157 4.450082 AGTAGCATGTTCGTGTGTGATA 57.550 40.909 0.00 0.00 0.00 2.15
2853 3187 8.511321 TGGTTATTGTAGAGTTACATTTGCAAG 58.489 33.333 0.00 0.00 39.43 4.01
2869 3203 6.494893 TTTGCAAGTTGGTATGACAGATAC 57.505 37.500 4.75 0.00 0.00 2.24
2884 3218 5.000012 ACAGATACGTTCCTCTTGTCATC 58.000 43.478 0.00 0.00 0.00 2.92
2917 3261 7.504574 TCCAGTATATTGATTACTCGGTTCTGA 59.495 37.037 0.00 0.00 0.00 3.27
2952 3296 3.459598 TGTAGAAATGGGCCATTAGAGCT 59.540 43.478 30.89 24.45 32.43 4.09
3044 3392 2.165437 GGTGTAGCCTCTCTCAGTGAAG 59.835 54.545 0.00 0.00 0.00 3.02
3202 3550 8.918202 AGTCACTTTCTATTCAACAATGGTTA 57.082 30.769 0.00 0.00 34.87 2.85
3253 3668 6.488006 ACTTGATGAGAATGTGTTTGCTTACT 59.512 34.615 0.00 0.00 0.00 2.24
3259 3674 7.195646 TGAGAATGTGTTTGCTTACTTTCTTG 58.804 34.615 0.00 0.00 39.74 3.02
3308 3723 1.271102 GACCTGTCTCTCCACTGTGAC 59.729 57.143 9.86 0.00 0.00 3.67
3403 3818 6.662414 ACCGTGTGACAAATATATGAACTG 57.338 37.500 0.00 0.00 0.00 3.16
3417 3832 2.221169 TGAACTGTGTAAAGCTGGCAG 58.779 47.619 10.94 10.94 0.00 4.85
3636 4051 9.771534 AGATAAACTTATCAAGGTCATCTAAGC 57.228 33.333 11.15 0.00 41.52 3.09
3659 4076 5.652452 GCCATCTAATGTTTACTTGGGAGTT 59.348 40.000 0.00 0.00 37.33 3.01
3730 4161 4.594123 TGCCGGATTAATCGTATTCTGA 57.406 40.909 5.05 0.00 0.00 3.27
3732 4163 4.038763 TGCCGGATTAATCGTATTCTGAGT 59.961 41.667 5.05 0.00 0.00 3.41
3741 4172 2.688446 TCGTATTCTGAGTCGGAGCAAT 59.312 45.455 1.08 0.00 0.00 3.56
3746 4177 1.895798 TCTGAGTCGGAGCAATGAACT 59.104 47.619 0.00 0.00 0.00 3.01
3774 4205 0.322187 GTGGCCCATTTCGTACCAGT 60.322 55.000 0.00 0.00 0.00 4.00
3779 4210 2.681344 GCCCATTTCGTACCAGTAAAGG 59.319 50.000 0.00 0.00 0.00 3.11
3788 4226 4.162698 TCGTACCAGTAAAGGCCATGTATT 59.837 41.667 5.01 0.00 0.00 1.89
3818 4256 7.064229 AGGGTTGATTTTACTTCCACACTTAA 58.936 34.615 0.00 0.00 0.00 1.85
3834 4272 5.245526 CACACTTAACTACTCTAGGTTGGGT 59.754 44.000 0.00 0.00 0.00 4.51
3886 4346 1.561076 TGCCCACTGCTATTGATGAGT 59.439 47.619 0.00 0.00 42.00 3.41
3985 4445 4.800471 CACTTGTTGCAGGAAGAAGAAAAC 59.200 41.667 17.19 0.00 37.15 2.43
4002 4462 2.770164 AACGAAGAAGAGGACATGGG 57.230 50.000 0.00 0.00 0.00 4.00
4018 4478 3.230134 CATGGGGAAGTTGGAAGACAAA 58.770 45.455 0.00 0.00 41.58 2.83
4020 4480 2.512056 TGGGGAAGTTGGAAGACAAAGA 59.488 45.455 0.00 0.00 41.58 2.52
4021 4481 3.140144 TGGGGAAGTTGGAAGACAAAGAT 59.860 43.478 0.00 0.00 41.58 2.40
4022 4482 4.352595 TGGGGAAGTTGGAAGACAAAGATA 59.647 41.667 0.00 0.00 41.58 1.98
4023 4483 5.163034 TGGGGAAGTTGGAAGACAAAGATAA 60.163 40.000 0.00 0.00 41.58 1.75
4025 4485 5.416013 GGGAAGTTGGAAGACAAAGATAAGG 59.584 44.000 0.00 0.00 41.58 2.69
4145 4605 4.245660 TCTTTTGTCTTCTGCATCGGTAG 58.754 43.478 0.00 0.00 0.00 3.18
4154 4615 3.531538 TCTGCATCGGTAGGATTTCAAC 58.468 45.455 0.00 0.00 31.28 3.18
4161 4622 6.428159 GCATCGGTAGGATTTCAACAGAATAT 59.572 38.462 0.00 0.00 31.28 1.28
4175 4636 6.145858 TCAACAGAATATTTGTTTGCACATGC 59.854 34.615 11.10 0.00 36.67 4.06
4182 4643 2.791383 TGTTTGCACATGCCTGTTAC 57.209 45.000 0.49 0.00 41.18 2.50
4192 4653 6.097696 TGCACATGCCTGTTACTAGATAGTTA 59.902 38.462 0.00 0.00 41.18 2.24
4193 4654 7.155328 GCACATGCCTGTTACTAGATAGTTAT 58.845 38.462 0.00 0.00 33.84 1.89
4195 4656 8.982685 CACATGCCTGTTACTAGATAGTTATTG 58.017 37.037 0.00 0.00 33.84 1.90
4243 4803 2.928801 TGCAGTCAACTAGCAAGGAA 57.071 45.000 0.00 0.00 34.97 3.36
4324 4884 6.601613 TCTTATGCACAATAAGGTTAACCAGG 59.398 38.462 26.26 12.39 45.44 4.45
4325 4885 3.426615 TGCACAATAAGGTTAACCAGGG 58.573 45.455 26.26 12.20 38.89 4.45
4332 4892 0.698818 AGGTTAACCAGGGCCTTCAG 59.301 55.000 26.26 0.00 38.89 3.02
4346 4906 2.825532 GCCTTCAGCCTTCCACAATAAA 59.174 45.455 0.00 0.00 34.35 1.40
4362 4922 7.877097 TCCACAATAAAATTAAGCAGTTGCATT 59.123 29.630 6.90 1.14 45.16 3.56
4366 4926 8.928733 CAATAAAATTAAGCAGTTGCATTCAGT 58.071 29.630 6.90 0.00 45.16 3.41
4419 4986 9.480053 CATTATTATTATCTGCAAAAAGGTGGG 57.520 33.333 0.00 0.00 0.00 4.61
4471 5038 9.941991 CGCATTCTCTAAAACACATTATTTTTG 57.058 29.630 0.00 0.00 31.79 2.44
4500 5067 5.926542 GTGCAGATAGAACTGTACAACTCAA 59.073 40.000 10.85 0.00 46.93 3.02
4502 5069 7.759886 GTGCAGATAGAACTGTACAACTCAATA 59.240 37.037 10.85 0.00 46.93 1.90
4514 5081 4.957296 ACAACTCAATACGTGAAGGTTCT 58.043 39.130 0.00 0.00 35.22 3.01
4517 5084 4.730657 ACTCAATACGTGAAGGTTCTACG 58.269 43.478 0.00 10.92 42.98 3.51
4518 5085 4.456911 ACTCAATACGTGAAGGTTCTACGA 59.543 41.667 16.34 5.92 40.01 3.43
4583 5150 5.854010 AATCCGCTAGAAGTTCAGTATCA 57.146 39.130 5.50 0.00 0.00 2.15
4597 5164 3.005155 TCAGTATCATCGGCACTCATGAG 59.995 47.826 21.37 21.37 32.53 2.90
4598 5165 2.298446 AGTATCATCGGCACTCATGAGG 59.702 50.000 26.08 15.76 32.53 3.86
4658 5317 4.698583 ATCAGATCTTTGAAAGTGCAGC 57.301 40.909 4.68 0.00 0.00 5.25
4685 5344 7.230712 AGGTCTGTAGGGTTAACAAAAATGAAG 59.769 37.037 8.10 0.00 0.00 3.02
4688 5347 8.973182 TCTGTAGGGTTAACAAAAATGAAGTTT 58.027 29.630 8.10 0.00 0.00 2.66
4713 5372 4.735662 CAATTTGGTTGGCATGAGTTTG 57.264 40.909 0.00 0.00 34.06 2.93
4735 5394 3.532542 GGGTTCTCCCGTTTCTAATGAG 58.467 50.000 0.00 0.00 44.74 2.90
4755 5417 6.692849 TGAGCATCCACTATCCTGATAATT 57.307 37.500 0.00 0.00 0.00 1.40
4766 5428 7.386299 CACTATCCTGATAATTTACCAGTCTGC 59.614 40.741 0.00 0.00 0.00 4.26
4776 5438 5.489792 TTTACCAGTCTGCTTCTTCATCT 57.510 39.130 0.00 0.00 0.00 2.90
4781 5443 1.742268 GTCTGCTTCTTCATCTTGGCC 59.258 52.381 0.00 0.00 0.00 5.36
4782 5444 1.352017 TCTGCTTCTTCATCTTGGCCA 59.648 47.619 0.00 0.00 0.00 5.36
4783 5445 2.165167 CTGCTTCTTCATCTTGGCCAA 58.835 47.619 19.25 19.25 0.00 4.52
4784 5446 1.888512 TGCTTCTTCATCTTGGCCAAC 59.111 47.619 16.05 0.74 0.00 3.77
4820 5485 2.936202 ACATCTGGTGTGTTCTGCTTT 58.064 42.857 0.00 0.00 40.28 3.51
4855 5520 1.202915 TGCCATGCTCAAGGAACTGAA 60.203 47.619 0.00 0.00 40.86 3.02
4858 5523 3.858503 GCCATGCTCAAGGAACTGAAAAC 60.859 47.826 0.00 0.00 40.86 2.43
4862 5527 2.224314 GCTCAAGGAACTGAAAACGGAG 59.776 50.000 0.00 0.00 40.86 4.63
4953 5629 4.395231 TGTACAAGTCTAGACGACATGAGG 59.605 45.833 17.07 4.78 42.42 3.86
4966 5656 3.801050 CGACATGAGGCTAAGATCTTGTG 59.199 47.826 18.47 11.43 34.90 3.33
5141 5845 4.882427 GCCTCTCCAAAGATAAAGGTAACC 59.118 45.833 0.00 0.00 37.17 2.85
5145 5849 7.769507 CCTCTCCAAAGATAAAGGTAACCTAAC 59.230 40.741 0.00 0.00 31.13 2.34
5146 5850 8.209802 TCTCCAAAGATAAAGGTAACCTAACA 57.790 34.615 0.00 0.00 31.13 2.41
5149 5853 7.388500 TCCAAAGATAAAGGTAACCTAACAACG 59.612 37.037 0.00 0.00 31.13 4.10
5150 5854 7.388500 CCAAAGATAAAGGTAACCTAACAACGA 59.612 37.037 0.00 0.00 31.13 3.85
5151 5855 8.943002 CAAAGATAAAGGTAACCTAACAACGAT 58.057 33.333 0.00 0.00 31.13 3.73
5153 5857 9.813446 AAGATAAAGGTAACCTAACAACGATAG 57.187 33.333 0.00 0.00 35.76 2.08
5154 5858 7.924947 AGATAAAGGTAACCTAACAACGATAGC 59.075 37.037 0.00 0.00 33.29 2.97
5155 5859 5.672421 AAGGTAACCTAACAACGATAGCT 57.328 39.130 0.00 0.00 33.29 3.32
5156 5860 5.007385 AGGTAACCTAACAACGATAGCTG 57.993 43.478 0.00 0.00 32.47 4.24
5162 5866 1.635663 AACAACGATAGCTGCACGCC 61.636 55.000 1.02 0.00 40.39 5.68
5163 5867 1.811266 CAACGATAGCTGCACGCCT 60.811 57.895 1.02 0.00 40.39 5.52
5164 5868 1.811266 AACGATAGCTGCACGCCTG 60.811 57.895 1.02 0.00 40.39 4.85
5165 5869 3.634072 CGATAGCTGCACGCCTGC 61.634 66.667 1.02 0.19 44.52 4.85
5181 5885 1.043816 CTGCACCCCTGTCTCGATAT 58.956 55.000 0.00 0.00 0.00 1.63
5206 5910 5.105675 TGCTTGACCGTATTGACACATACTA 60.106 40.000 0.00 0.00 0.00 1.82
5210 5914 4.679662 ACCGTATTGACACATACTACTGC 58.320 43.478 6.35 0.00 0.00 4.40
5211 5915 4.401519 ACCGTATTGACACATACTACTGCT 59.598 41.667 0.00 0.00 0.00 4.24
5213 5917 5.221067 CCGTATTGACACATACTACTGCTCT 60.221 44.000 0.00 0.00 0.00 4.09
5214 5918 5.683302 CGTATTGACACATACTACTGCTCTG 59.317 44.000 0.00 0.00 0.00 3.35
5215 5919 5.667539 ATTGACACATACTACTGCTCTGT 57.332 39.130 0.00 0.00 0.00 3.41
5217 5921 4.336280 TGACACATACTACTGCTCTGTCT 58.664 43.478 0.00 0.00 0.00 3.41
5218 5922 4.767409 TGACACATACTACTGCTCTGTCTT 59.233 41.667 0.00 0.00 0.00 3.01
5219 5923 5.065704 ACACATACTACTGCTCTGTCTTG 57.934 43.478 0.00 0.00 0.00 3.02
5220 5924 4.524714 ACACATACTACTGCTCTGTCTTGT 59.475 41.667 0.00 0.00 0.00 3.16
5221 5925 4.861462 CACATACTACTGCTCTGTCTTGTG 59.139 45.833 0.00 0.00 0.00 3.33
5222 5926 2.447244 ACTACTGCTCTGTCTTGTGC 57.553 50.000 0.00 0.00 0.00 4.57
5223 5927 1.967066 ACTACTGCTCTGTCTTGTGCT 59.033 47.619 0.00 0.00 0.00 4.40
5224 5928 2.366916 ACTACTGCTCTGTCTTGTGCTT 59.633 45.455 0.00 0.00 0.00 3.91
5225 5929 1.590932 ACTGCTCTGTCTTGTGCTTG 58.409 50.000 0.00 0.00 0.00 4.01
5226 5930 0.873054 CTGCTCTGTCTTGTGCTTGG 59.127 55.000 0.00 0.00 0.00 3.61
5227 5931 0.469494 TGCTCTGTCTTGTGCTTGGA 59.531 50.000 0.00 0.00 0.00 3.53
5231 5935 1.881973 TCTGTCTTGTGCTTGGATTGC 59.118 47.619 0.00 0.00 0.00 3.56
5291 6000 0.106769 TTGGCACACAAGCTGAGGAA 60.107 50.000 0.00 0.00 39.29 3.36
5313 6022 0.388907 GGAACCCGACGACGAATGAA 60.389 55.000 9.28 0.00 42.66 2.57
5314 6023 0.712222 GAACCCGACGACGAATGAAC 59.288 55.000 9.28 0.00 42.66 3.18
5315 6024 0.668401 AACCCGACGACGAATGAACC 60.668 55.000 9.28 0.00 42.66 3.62
5316 6025 1.214589 CCCGACGACGAATGAACCT 59.785 57.895 9.28 0.00 42.66 3.50
5318 6027 1.066605 CCCGACGACGAATGAACCTAT 59.933 52.381 9.28 0.00 42.66 2.57
5319 6028 2.480759 CCCGACGACGAATGAACCTATT 60.481 50.000 9.28 0.00 42.66 1.73
5320 6029 3.184541 CCGACGACGAATGAACCTATTT 58.815 45.455 9.28 0.00 42.66 1.40
5322 6031 4.092383 CCGACGACGAATGAACCTATTTTT 59.908 41.667 9.28 0.00 42.66 1.94
5339 6082 0.383949 TTTTTGGTGAGAACGCCTGC 59.616 50.000 0.00 0.00 45.89 4.85
5341 6084 2.337879 TTTGGTGAGAACGCCTGCCT 62.338 55.000 0.00 0.00 45.89 4.75
5342 6085 2.435059 GGTGAGAACGCCTGCCTC 60.435 66.667 0.00 0.00 42.77 4.70
5384 6127 7.865706 AGGAAATGTGTGTATGTAATCTTCC 57.134 36.000 0.00 0.00 0.00 3.46
5418 6161 0.814010 ACACGTGAAAGCCCTGTGAC 60.814 55.000 25.01 0.00 34.72 3.67
5421 6164 1.456287 GTGAAAGCCCTGTGACCCT 59.544 57.895 0.00 0.00 0.00 4.34
5422 6165 0.606673 GTGAAAGCCCTGTGACCCTC 60.607 60.000 0.00 0.00 0.00 4.30
5423 6166 0.768221 TGAAAGCCCTGTGACCCTCT 60.768 55.000 0.00 0.00 0.00 3.69
5426 6169 0.474660 AAGCCCTGTGACCCTCTCTT 60.475 55.000 0.00 0.00 0.00 2.85
5427 6170 0.907230 AGCCCTGTGACCCTCTCTTC 60.907 60.000 0.00 0.00 0.00 2.87
5428 6171 0.907230 GCCCTGTGACCCTCTCTTCT 60.907 60.000 0.00 0.00 0.00 2.85
5430 6173 1.552792 CCCTGTGACCCTCTCTTCTTC 59.447 57.143 0.00 0.00 0.00 2.87
5431 6174 1.552792 CCTGTGACCCTCTCTTCTTCC 59.447 57.143 0.00 0.00 0.00 3.46
5432 6175 1.203523 CTGTGACCCTCTCTTCTTCCG 59.796 57.143 0.00 0.00 0.00 4.30
5433 6176 1.258676 GTGACCCTCTCTTCTTCCGT 58.741 55.000 0.00 0.00 0.00 4.69
5434 6177 1.619332 GTGACCCTCTCTTCTTCCGTT 59.381 52.381 0.00 0.00 0.00 4.44
5435 6178 1.893801 TGACCCTCTCTTCTTCCGTTC 59.106 52.381 0.00 0.00 0.00 3.95
5436 6179 2.172679 GACCCTCTCTTCTTCCGTTCT 58.827 52.381 0.00 0.00 0.00 3.01
5437 6180 1.896465 ACCCTCTCTTCTTCCGTTCTG 59.104 52.381 0.00 0.00 0.00 3.02
5438 6181 1.896465 CCCTCTCTTCTTCCGTTCTGT 59.104 52.381 0.00 0.00 0.00 3.41
5439 6182 2.094442 CCCTCTCTTCTTCCGTTCTGTC 60.094 54.545 0.00 0.00 0.00 3.51
5440 6183 2.823154 CCTCTCTTCTTCCGTTCTGTCT 59.177 50.000 0.00 0.00 0.00 3.41
5441 6184 3.257127 CCTCTCTTCTTCCGTTCTGTCTT 59.743 47.826 0.00 0.00 0.00 3.01
5442 6185 4.262249 CCTCTCTTCTTCCGTTCTGTCTTT 60.262 45.833 0.00 0.00 0.00 2.52
5443 6186 5.277857 TCTCTTCTTCCGTTCTGTCTTTT 57.722 39.130 0.00 0.00 0.00 2.27
5444 6187 5.671493 TCTCTTCTTCCGTTCTGTCTTTTT 58.329 37.500 0.00 0.00 0.00 1.94
5482 6225 1.291877 CTGTTTTCTCCACTCGCCGG 61.292 60.000 0.00 0.00 0.00 6.13
5483 6226 2.358247 TTTTCTCCACTCGCCGGC 60.358 61.111 19.07 19.07 0.00 6.13
5484 6227 3.171828 TTTTCTCCACTCGCCGGCA 62.172 57.895 28.98 12.94 0.00 5.69
5485 6228 2.668185 TTTTCTCCACTCGCCGGCAA 62.668 55.000 28.98 7.25 0.00 4.52
5490 6233 4.093952 CACTCGCCGGCAAGCAAG 62.094 66.667 28.98 16.72 0.00 4.01
5496 6239 4.404654 CCGGCAAGCAAGCGGTTC 62.405 66.667 0.00 0.00 33.50 3.62
5527 6270 2.888534 CACATAACCCGCCCGTCG 60.889 66.667 0.00 0.00 38.08 5.12
5545 6288 3.756677 CTGTCGCTGCGTGTGTCG 61.757 66.667 22.48 2.38 43.12 4.35
5598 6363 0.042967 GATTCGATTCAACTCGCCGC 60.043 55.000 2.48 0.00 38.52 6.53
5696 6468 1.327764 GCGCGGAAGATACAAAAGGAG 59.672 52.381 8.83 0.00 0.00 3.69
5702 6474 4.797349 CGGAAGATACAAAAGGAGACGTAC 59.203 45.833 0.00 0.00 0.00 3.67
5703 6475 4.797349 GGAAGATACAAAAGGAGACGTACG 59.203 45.833 15.01 15.01 0.00 3.67
5704 6476 5.382618 AAGATACAAAAGGAGACGTACGT 57.617 39.130 23.04 23.04 0.00 3.57
5706 6478 6.690194 AGATACAAAAGGAGACGTACGTAT 57.310 37.500 22.87 19.70 0.00 3.06
5707 6479 6.493116 AGATACAAAAGGAGACGTACGTATG 58.507 40.000 21.75 13.27 0.00 2.39
5737 6531 3.081804 CTCCACAGGGACAAATGGTAAC 58.918 50.000 0.00 0.00 38.64 2.50
5748 6542 4.337145 ACAAATGGTAACGCCCAGAATTA 58.663 39.130 0.00 0.00 38.07 1.40
5766 6574 8.726988 CCAGAATTACGTATTTTTCTTCTTCCA 58.273 33.333 11.22 0.00 0.00 3.53
5774 6582 1.229428 TTTCTTCTTCCACTGCTGCG 58.771 50.000 0.00 0.00 0.00 5.18
5775 6583 0.392706 TTCTTCTTCCACTGCTGCGA 59.607 50.000 0.00 0.00 0.00 5.10
5820 6632 2.729862 GACTGACTGACGCGCGTT 60.730 61.111 38.03 22.44 0.00 4.84
5821 6633 2.279252 ACTGACTGACGCGCGTTT 60.279 55.556 38.03 23.97 0.00 3.60
5822 6634 2.168621 CTGACTGACGCGCGTTTG 59.831 61.111 38.03 31.10 0.00 2.93
5823 6635 3.893914 CTGACTGACGCGCGTTTGC 62.894 63.158 38.03 24.57 37.91 3.68
5950 6765 3.500299 GCCACACCTTTCTCTTTTCTCTC 59.500 47.826 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.651391 TTAAAAACTCTACGTTCATGAGTGAA 57.349 30.769 11.82 0.00 41.89 3.18
1 2 8.827177 ATTAAAAACTCTACGTTCATGAGTGA 57.173 30.769 11.82 0.00 40.44 3.41
2 3 9.878599 AAATTAAAAACTCTACGTTCATGAGTG 57.121 29.630 11.82 0.00 40.44 3.51
4 5 9.250986 CGAAATTAAAAACTCTACGTTCATGAG 57.749 33.333 0.00 0.00 33.90 2.90
5 6 8.980610 TCGAAATTAAAAACTCTACGTTCATGA 58.019 29.630 0.00 0.00 33.90 3.07
6 7 9.588774 TTCGAAATTAAAAACTCTACGTTCATG 57.411 29.630 0.00 0.00 33.90 3.07
7 8 9.807386 CTTCGAAATTAAAAACTCTACGTTCAT 57.193 29.630 0.00 0.00 33.90 2.57
8 9 7.795272 GCTTCGAAATTAAAAACTCTACGTTCA 59.205 33.333 0.00 0.00 33.90 3.18
9 10 7.795272 TGCTTCGAAATTAAAAACTCTACGTTC 59.205 33.333 0.00 0.00 33.90 3.95
10 11 7.585210 GTGCTTCGAAATTAAAAACTCTACGTT 59.415 33.333 0.00 0.00 37.47 3.99
11 12 7.067728 GTGCTTCGAAATTAAAAACTCTACGT 58.932 34.615 0.00 0.00 0.00 3.57
12 13 7.067116 TGTGCTTCGAAATTAAAAACTCTACG 58.933 34.615 0.00 0.00 0.00 3.51
13 14 8.950403 ATGTGCTTCGAAATTAAAAACTCTAC 57.050 30.769 0.00 0.00 0.00 2.59
19 20 9.272901 CGAGATTATGTGCTTCGAAATTAAAAA 57.727 29.630 0.00 0.00 0.00 1.94
20 21 8.447833 ACGAGATTATGTGCTTCGAAATTAAAA 58.552 29.630 0.00 0.00 0.00 1.52
21 22 7.970384 ACGAGATTATGTGCTTCGAAATTAAA 58.030 30.769 0.00 0.00 0.00 1.52
22 23 7.276878 TGACGAGATTATGTGCTTCGAAATTAA 59.723 33.333 0.00 0.00 0.00 1.40
23 24 6.754675 TGACGAGATTATGTGCTTCGAAATTA 59.245 34.615 0.00 0.00 0.00 1.40
24 25 5.580691 TGACGAGATTATGTGCTTCGAAATT 59.419 36.000 0.00 0.00 0.00 1.82
25 26 5.109210 TGACGAGATTATGTGCTTCGAAAT 58.891 37.500 0.00 0.00 0.00 2.17
26 27 4.490743 TGACGAGATTATGTGCTTCGAAA 58.509 39.130 0.00 0.00 0.00 3.46
27 28 4.104696 TGACGAGATTATGTGCTTCGAA 57.895 40.909 0.00 0.00 0.00 3.71
28 29 3.775661 TGACGAGATTATGTGCTTCGA 57.224 42.857 0.00 0.00 0.00 3.71
29 30 3.859961 ACTTGACGAGATTATGTGCTTCG 59.140 43.478 0.00 0.00 0.00 3.79
30 31 5.786401 AACTTGACGAGATTATGTGCTTC 57.214 39.130 0.00 0.00 0.00 3.86
31 32 5.106555 CCAAACTTGACGAGATTATGTGCTT 60.107 40.000 0.00 0.00 0.00 3.91
32 33 4.393062 CCAAACTTGACGAGATTATGTGCT 59.607 41.667 0.00 0.00 0.00 4.40
33 34 4.154195 ACCAAACTTGACGAGATTATGTGC 59.846 41.667 0.00 0.00 0.00 4.57
34 35 5.862924 ACCAAACTTGACGAGATTATGTG 57.137 39.130 0.00 0.00 0.00 3.21
35 36 5.763204 ACAACCAAACTTGACGAGATTATGT 59.237 36.000 0.00 0.00 0.00 2.29
36 37 6.241207 ACAACCAAACTTGACGAGATTATG 57.759 37.500 0.00 0.00 0.00 1.90
37 38 7.972832 TTACAACCAAACTTGACGAGATTAT 57.027 32.000 0.00 0.00 0.00 1.28
38 39 7.972832 ATTACAACCAAACTTGACGAGATTA 57.027 32.000 0.00 0.00 0.00 1.75
39 40 6.877611 ATTACAACCAAACTTGACGAGATT 57.122 33.333 0.00 0.00 0.00 2.40
40 41 6.877611 AATTACAACCAAACTTGACGAGAT 57.122 33.333 0.00 0.00 0.00 2.75
41 42 6.687081 AAATTACAACCAAACTTGACGAGA 57.313 33.333 0.00 0.00 0.00 4.04
42 43 7.075741 CCTAAATTACAACCAAACTTGACGAG 58.924 38.462 0.00 0.00 0.00 4.18
43 44 6.543100 ACCTAAATTACAACCAAACTTGACGA 59.457 34.615 0.00 0.00 0.00 4.20
44 45 6.635239 CACCTAAATTACAACCAAACTTGACG 59.365 38.462 0.00 0.00 0.00 4.35
45 46 7.485810 ACACCTAAATTACAACCAAACTTGAC 58.514 34.615 0.00 0.00 0.00 3.18
46 47 7.648039 ACACCTAAATTACAACCAAACTTGA 57.352 32.000 0.00 0.00 0.00 3.02
47 48 8.079809 CCTACACCTAAATTACAACCAAACTTG 58.920 37.037 0.00 0.00 0.00 3.16
48 49 7.781219 ACCTACACCTAAATTACAACCAAACTT 59.219 33.333 0.00 0.00 0.00 2.66
49 50 7.292319 ACCTACACCTAAATTACAACCAAACT 58.708 34.615 0.00 0.00 0.00 2.66
50 51 7.514784 ACCTACACCTAAATTACAACCAAAC 57.485 36.000 0.00 0.00 0.00 2.93
51 52 6.427547 CGACCTACACCTAAATTACAACCAAA 59.572 38.462 0.00 0.00 0.00 3.28
52 53 5.933463 CGACCTACACCTAAATTACAACCAA 59.067 40.000 0.00 0.00 0.00 3.67
53 54 5.011943 ACGACCTACACCTAAATTACAACCA 59.988 40.000 0.00 0.00 0.00 3.67
54 55 5.482006 ACGACCTACACCTAAATTACAACC 58.518 41.667 0.00 0.00 0.00 3.77
55 56 6.158598 TGACGACCTACACCTAAATTACAAC 58.841 40.000 0.00 0.00 0.00 3.32
56 57 6.343716 TGACGACCTACACCTAAATTACAA 57.656 37.500 0.00 0.00 0.00 2.41
57 58 5.981088 TGACGACCTACACCTAAATTACA 57.019 39.130 0.00 0.00 0.00 2.41
58 59 6.335777 ACATGACGACCTACACCTAAATTAC 58.664 40.000 0.00 0.00 0.00 1.89
59 60 6.534475 ACATGACGACCTACACCTAAATTA 57.466 37.500 0.00 0.00 0.00 1.40
60 61 5.416271 ACATGACGACCTACACCTAAATT 57.584 39.130 0.00 0.00 0.00 1.82
61 62 5.416271 AACATGACGACCTACACCTAAAT 57.584 39.130 0.00 0.00 0.00 1.40
62 63 4.877378 AACATGACGACCTACACCTAAA 57.123 40.909 0.00 0.00 0.00 1.85
63 64 4.561938 CCAAACATGACGACCTACACCTAA 60.562 45.833 0.00 0.00 0.00 2.69
64 65 3.056393 CCAAACATGACGACCTACACCTA 60.056 47.826 0.00 0.00 0.00 3.08
65 66 2.289444 CCAAACATGACGACCTACACCT 60.289 50.000 0.00 0.00 0.00 4.00
66 67 2.073816 CCAAACATGACGACCTACACC 58.926 52.381 0.00 0.00 0.00 4.16
67 68 2.762745 ACCAAACATGACGACCTACAC 58.237 47.619 0.00 0.00 0.00 2.90
68 69 3.135225 CAACCAAACATGACGACCTACA 58.865 45.455 0.00 0.00 0.00 2.74
69 70 2.482721 CCAACCAAACATGACGACCTAC 59.517 50.000 0.00 0.00 0.00 3.18
70 71 2.551287 CCCAACCAAACATGACGACCTA 60.551 50.000 0.00 0.00 0.00 3.08
71 72 1.604604 CCAACCAAACATGACGACCT 58.395 50.000 0.00 0.00 0.00 3.85
72 73 0.596082 CCCAACCAAACATGACGACC 59.404 55.000 0.00 0.00 0.00 4.79
73 74 0.596082 CCCCAACCAAACATGACGAC 59.404 55.000 0.00 0.00 0.00 4.34
74 75 0.183971 ACCCCAACCAAACATGACGA 59.816 50.000 0.00 0.00 0.00 4.20
75 76 0.596082 GACCCCAACCAAACATGACG 59.404 55.000 0.00 0.00 0.00 4.35
76 77 1.886542 GAGACCCCAACCAAACATGAC 59.113 52.381 0.00 0.00 0.00 3.06
77 78 1.203001 GGAGACCCCAACCAAACATGA 60.203 52.381 0.00 0.00 34.14 3.07
78 79 1.203050 AGGAGACCCCAACCAAACATG 60.203 52.381 0.00 0.00 37.41 3.21
79 80 1.075536 GAGGAGACCCCAACCAAACAT 59.924 52.381 0.00 0.00 37.41 2.71
80 81 0.476771 GAGGAGACCCCAACCAAACA 59.523 55.000 0.00 0.00 37.41 2.83
81 82 0.476771 TGAGGAGACCCCAACCAAAC 59.523 55.000 0.00 0.00 37.41 2.93
82 83 1.075374 CATGAGGAGACCCCAACCAAA 59.925 52.381 0.00 0.00 37.41 3.28
83 84 0.698238 CATGAGGAGACCCCAACCAA 59.302 55.000 0.00 0.00 37.41 3.67
84 85 0.178876 TCATGAGGAGACCCCAACCA 60.179 55.000 0.00 0.00 37.41 3.67
85 86 0.253327 GTCATGAGGAGACCCCAACC 59.747 60.000 0.00 0.00 37.41 3.77
86 87 3.863407 GTCATGAGGAGACCCCAAC 57.137 57.895 0.00 0.00 37.41 3.77
92 93 4.520492 ACAATGTTTTGGTCATGAGGAGAC 59.480 41.667 0.00 0.00 37.15 3.36
93 94 4.728772 ACAATGTTTTGGTCATGAGGAGA 58.271 39.130 0.00 0.00 37.15 3.71
94 95 5.106157 GGTACAATGTTTTGGTCATGAGGAG 60.106 44.000 0.00 0.00 37.15 3.69
95 96 4.764823 GGTACAATGTTTTGGTCATGAGGA 59.235 41.667 0.00 0.00 37.15 3.71
96 97 4.766891 AGGTACAATGTTTTGGTCATGAGG 59.233 41.667 0.00 0.00 37.15 3.86
97 98 5.964958 AGGTACAATGTTTTGGTCATGAG 57.035 39.130 0.00 0.00 37.15 2.90
98 99 6.723298 AAAGGTACAATGTTTTGGTCATGA 57.277 33.333 0.00 0.00 37.15 3.07
99 100 9.487790 AATTAAAGGTACAATGTTTTGGTCATG 57.512 29.630 0.00 0.00 37.15 3.07
109 110 9.243105 ACTGCTCAATAATTAAAGGTACAATGT 57.757 29.630 0.00 0.00 0.00 2.71
118 119 9.508567 GCCTTCTTTACTGCTCAATAATTAAAG 57.491 33.333 0.00 0.00 0.00 1.85
119 120 8.181573 CGCCTTCTTTACTGCTCAATAATTAAA 58.818 33.333 0.00 0.00 0.00 1.52
120 121 7.551262 TCGCCTTCTTTACTGCTCAATAATTAA 59.449 33.333 0.00 0.00 0.00 1.40
121 122 7.045416 TCGCCTTCTTTACTGCTCAATAATTA 58.955 34.615 0.00 0.00 0.00 1.40
122 123 5.880332 TCGCCTTCTTTACTGCTCAATAATT 59.120 36.000 0.00 0.00 0.00 1.40
123 124 5.428253 TCGCCTTCTTTACTGCTCAATAAT 58.572 37.500 0.00 0.00 0.00 1.28
124 125 4.827692 TCGCCTTCTTTACTGCTCAATAA 58.172 39.130 0.00 0.00 0.00 1.40
125 126 4.159693 TCTCGCCTTCTTTACTGCTCAATA 59.840 41.667 0.00 0.00 0.00 1.90
126 127 3.055819 TCTCGCCTTCTTTACTGCTCAAT 60.056 43.478 0.00 0.00 0.00 2.57
127 128 2.299013 TCTCGCCTTCTTTACTGCTCAA 59.701 45.455 0.00 0.00 0.00 3.02
128 129 1.893137 TCTCGCCTTCTTTACTGCTCA 59.107 47.619 0.00 0.00 0.00 4.26
129 130 2.656560 TCTCGCCTTCTTTACTGCTC 57.343 50.000 0.00 0.00 0.00 4.26
130 131 3.618690 AATCTCGCCTTCTTTACTGCT 57.381 42.857 0.00 0.00 0.00 4.24
131 132 3.935828 AGAAATCTCGCCTTCTTTACTGC 59.064 43.478 0.00 0.00 0.00 4.40
132 133 5.171476 TGAGAAATCTCGCCTTCTTTACTG 58.829 41.667 5.99 0.00 45.72 2.74
133 134 5.407407 TGAGAAATCTCGCCTTCTTTACT 57.593 39.130 5.99 0.00 45.72 2.24
134 135 6.481954 TTTGAGAAATCTCGCCTTCTTTAC 57.518 37.500 5.99 0.00 45.72 2.01
135 136 7.504924 TTTTTGAGAAATCTCGCCTTCTTTA 57.495 32.000 5.99 0.00 45.72 1.85
136 137 6.391227 TTTTTGAGAAATCTCGCCTTCTTT 57.609 33.333 5.99 0.00 45.72 2.52
185 186 0.315568 GGCTACAGAGATAGGCACGG 59.684 60.000 1.80 0.00 44.94 4.94
187 188 1.001158 GTCGGCTACAGAGATAGGCAC 60.001 57.143 7.09 1.65 45.67 5.01
258 260 4.058817 CGTGAGTTGCTAGGTCTTTTTCT 58.941 43.478 0.00 0.00 0.00 2.52
349 356 4.767255 CAGGTGCGGAGGGAGTGC 62.767 72.222 0.00 0.00 0.00 4.40
392 407 0.243907 CAACGACGTCACCTCCTCAT 59.756 55.000 17.16 0.00 0.00 2.90
454 469 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
455 470 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
456 471 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
457 472 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
458 473 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
459 474 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
460 475 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
461 476 4.513442 TGGTCATCTATTTTGGAACGGAG 58.487 43.478 0.00 0.00 0.00 4.63
462 477 4.561500 TGGTCATCTATTTTGGAACGGA 57.438 40.909 0.00 0.00 0.00 4.69
463 478 4.700213 AGTTGGTCATCTATTTTGGAACGG 59.300 41.667 0.00 0.00 0.00 4.44
464 479 5.880054 AGTTGGTCATCTATTTTGGAACG 57.120 39.130 0.00 0.00 0.00 3.95
465 480 7.433680 ACAAAGTTGGTCATCTATTTTGGAAC 58.566 34.615 0.00 0.00 0.00 3.62
466 481 7.595819 ACAAAGTTGGTCATCTATTTTGGAA 57.404 32.000 0.00 0.00 0.00 3.53
467 482 7.942341 AGTACAAAGTTGGTCATCTATTTTGGA 59.058 33.333 0.00 0.00 0.00 3.53
468 483 8.110860 AGTACAAAGTTGGTCATCTATTTTGG 57.889 34.615 0.00 0.00 0.00 3.28
478 493 9.195411 CGTATAAAGTTAGTACAAAGTTGGTCA 57.805 33.333 0.00 0.00 0.00 4.02
479 494 8.650714 CCGTATAAAGTTAGTACAAAGTTGGTC 58.349 37.037 0.00 0.00 0.00 4.02
480 495 8.367156 TCCGTATAAAGTTAGTACAAAGTTGGT 58.633 33.333 0.00 0.00 0.00 3.67
481 496 8.761575 TCCGTATAAAGTTAGTACAAAGTTGG 57.238 34.615 0.00 0.00 0.00 3.77
482 497 9.415544 ACTCCGTATAAAGTTAGTACAAAGTTG 57.584 33.333 0.00 0.00 0.00 3.16
491 506 8.027771 GCAGCATATACTCCGTATAAAGTTAGT 58.972 37.037 0.00 0.00 35.10 2.24
492 507 8.244802 AGCAGCATATACTCCGTATAAAGTTAG 58.755 37.037 0.00 0.00 35.10 2.34
493 508 8.118976 AGCAGCATATACTCCGTATAAAGTTA 57.881 34.615 0.00 0.00 35.10 2.24
494 509 6.994221 AGCAGCATATACTCCGTATAAAGTT 58.006 36.000 0.00 0.00 35.10 2.66
495 510 6.434652 AGAGCAGCATATACTCCGTATAAAGT 59.565 38.462 0.00 0.00 35.10 2.66
496 511 6.749578 CAGAGCAGCATATACTCCGTATAAAG 59.250 42.308 0.00 0.00 35.10 1.85
497 512 6.621613 CAGAGCAGCATATACTCCGTATAAA 58.378 40.000 0.00 0.00 35.10 1.40
498 513 5.393135 GCAGAGCAGCATATACTCCGTATAA 60.393 44.000 0.00 0.00 35.10 0.98
499 514 4.096532 GCAGAGCAGCATATACTCCGTATA 59.903 45.833 0.00 0.00 35.77 1.47
500 515 3.119316 GCAGAGCAGCATATACTCCGTAT 60.119 47.826 0.00 0.00 33.05 3.06
501 516 2.229062 GCAGAGCAGCATATACTCCGTA 59.771 50.000 0.00 0.00 0.00 4.02
502 517 1.000283 GCAGAGCAGCATATACTCCGT 60.000 52.381 0.00 0.00 0.00 4.69
503 518 1.671261 GGCAGAGCAGCATATACTCCG 60.671 57.143 0.00 0.00 35.83 4.63
504 519 1.622811 AGGCAGAGCAGCATATACTCC 59.377 52.381 0.00 0.00 35.83 3.85
505 520 2.562298 AGAGGCAGAGCAGCATATACTC 59.438 50.000 0.00 0.00 35.83 2.59
506 521 2.299582 CAGAGGCAGAGCAGCATATACT 59.700 50.000 0.00 0.00 35.83 2.12
507 522 2.612471 CCAGAGGCAGAGCAGCATATAC 60.612 54.545 0.00 0.00 35.83 1.47
531 546 1.006220 CACACTGCTACACGCCTGA 60.006 57.895 0.00 0.00 38.05 3.86
596 650 3.531538 ACATACTGAAATGGTAGGCACG 58.468 45.455 0.00 0.00 0.00 5.34
640 694 3.915437 TTGCTTCGATTTCCCAAGTTC 57.085 42.857 0.00 0.00 0.00 3.01
695 755 5.700832 AGCAGAAATACAATCAGTTTGACGA 59.299 36.000 0.00 0.00 38.76 4.20
877 939 4.883585 AGTATTCCACGCATCAAATGACAT 59.116 37.500 0.00 0.00 0.00 3.06
922 984 4.398988 TCAGACATTAATGTTCACATGGGC 59.601 41.667 21.63 6.32 41.95 5.36
1085 1147 8.682710 TGCCATTATTACCAAGAATGTTAAGAC 58.317 33.333 5.75 0.00 38.17 3.01
1118 1180 3.274288 GACTTCCCTGAATGGACATCAC 58.726 50.000 0.00 0.00 38.35 3.06
1153 1215 4.881157 ATCCAGCCCCTTTATTAGTTGT 57.119 40.909 0.00 0.00 0.00 3.32
1154 1216 4.342092 CCAATCCAGCCCCTTTATTAGTTG 59.658 45.833 0.00 0.00 0.00 3.16
1205 1270 0.249741 AGCGCCGTCAACTAAACTGT 60.250 50.000 2.29 0.00 0.00 3.55
1206 1271 0.865769 AAGCGCCGTCAACTAAACTG 59.134 50.000 2.29 0.00 0.00 3.16
1207 1272 1.145803 GAAGCGCCGTCAACTAAACT 58.854 50.000 2.29 0.00 0.00 2.66
1219 1284 1.362406 CTTCCTTTCCGAGAAGCGCC 61.362 60.000 2.29 0.00 39.11 6.53
1221 1286 1.362406 GCCTTCCTTTCCGAGAAGCG 61.362 60.000 0.00 0.00 38.53 4.68
1223 1288 1.270839 TGTGCCTTCCTTTCCGAGAAG 60.271 52.381 0.00 0.00 39.38 2.85
1243 1308 6.311723 CAGATCGCAACGGTAAAATAACTTT 58.688 36.000 0.00 0.00 0.00 2.66
1267 1332 0.539051 AGAGTCTGCCACATAGCACC 59.461 55.000 0.00 0.00 38.00 5.01
1365 1430 6.280855 TCCATTGATACGTCTTTCTCTTGA 57.719 37.500 0.00 0.00 0.00 3.02
1380 1445 3.843027 AGTCCACAGAGTCTTCCATTGAT 59.157 43.478 0.00 0.00 0.00 2.57
1382 1447 3.594134 GAGTCCACAGAGTCTTCCATTG 58.406 50.000 0.00 0.00 39.10 2.82
1394 1459 2.937469 CTCTACTGCAGAGTCCACAG 57.063 55.000 23.35 8.16 45.10 3.66
1405 1470 0.387565 GCAGGACCTAGCTCTACTGC 59.612 60.000 7.28 7.28 43.50 4.40
1413 1478 1.750780 GGCTTTGGCAGGACCTAGC 60.751 63.158 4.82 4.82 42.61 3.42
1441 1506 7.531280 CAGACGACTGTTCTTGATTATTCAT 57.469 36.000 6.73 0.00 39.11 2.57
1484 1549 2.554032 GGACCAATCACAGGAACACTTG 59.446 50.000 0.00 0.00 0.00 3.16
1487 1552 2.154462 CAGGACCAATCACAGGAACAC 58.846 52.381 0.00 0.00 0.00 3.32
1512 1577 1.205655 CTCATGGAAGCGACTCCTTCA 59.794 52.381 5.00 0.00 42.31 3.02
1513 1578 1.933247 CTCATGGAAGCGACTCCTTC 58.067 55.000 5.00 0.00 40.33 3.46
1516 1581 0.179062 ATGCTCATGGAAGCGACTCC 60.179 55.000 2.31 0.00 45.54 3.85
1520 1585 2.279741 GTTACATGCTCATGGAAGCGA 58.720 47.619 13.69 0.00 41.94 4.93
1521 1586 1.331756 GGTTACATGCTCATGGAAGCG 59.668 52.381 17.84 0.00 46.25 4.68
1535 1600 8.651589 ATTAGCTAGCTAGATGTATGGTTACA 57.348 34.615 25.15 5.12 42.35 2.41
1538 1603 8.200792 GCATATTAGCTAGCTAGATGTATGGTT 58.799 37.037 30.29 11.78 31.69 3.67
1540 1605 7.950512 AGCATATTAGCTAGCTAGATGTATGG 58.049 38.462 30.29 18.20 44.50 2.74
1543 1608 8.049721 TCAGAGCATATTAGCTAGCTAGATGTA 58.950 37.037 30.29 20.84 46.75 2.29
1550 1615 6.436847 TCTGAATCAGAGCATATTAGCTAGCT 59.563 38.462 23.12 23.12 46.75 3.32
1552 1617 9.656040 AATTCTGAATCAGAGCATATTAGCTAG 57.344 33.333 13.11 0.00 46.75 3.42
1555 1620 8.781196 TGAAATTCTGAATCAGAGCATATTAGC 58.219 33.333 13.11 7.01 41.75 3.09
1558 1623 8.975663 TCTGAAATTCTGAATCAGAGCATATT 57.024 30.769 13.11 7.47 43.35 1.28
1603 1740 5.986501 AGAACAAGTAGTACTTCCTGAGG 57.013 43.478 12.75 3.68 36.03 3.86
1640 1782 7.442364 TCTTGTGACTGAAATTAAAGAGTCCAG 59.558 37.037 0.00 0.00 35.03 3.86
1684 1826 2.694760 GCCAGTAGTGCTGCAAGGC 61.695 63.158 2.77 9.58 43.71 4.35
1750 1892 1.022735 CCATTGGCTAGCTTCAGCAG 58.977 55.000 15.72 0.00 43.67 4.24
1782 1924 3.023119 CAGCTGGCTTCTCTCTCTTCTA 58.977 50.000 5.57 0.00 0.00 2.10
1809 1951 4.155462 AGCTTGAATATGTCTGCAGTTGTG 59.845 41.667 14.67 0.00 0.00 3.33
1818 1960 3.567478 GGGACCAGCTTGAATATGTCT 57.433 47.619 0.00 0.00 0.00 3.41
1911 2053 4.277476 TGTCCTTGAATGTTGAAGGTTGT 58.723 39.130 10.16 0.00 41.55 3.32
1917 2059 4.984295 TCATCCTGTCCTTGAATGTTGAA 58.016 39.130 0.00 0.00 0.00 2.69
1952 2119 1.682849 TGGGCACACTCCACATACC 59.317 57.895 0.00 0.00 0.00 2.73
2049 2221 6.350780 CCTGGTACTAGTGTTTAACCACCTAG 60.351 46.154 9.91 4.32 35.34 3.02
2186 2456 6.987992 AGTAAAGTATCACGGTGTTTCTTCAA 59.012 34.615 8.17 0.06 0.00 2.69
2216 2486 4.018506 TCCTACCATTGGTCATGTCACAAT 60.019 41.667 12.68 0.00 37.09 2.71
2255 2525 4.806330 CATATTCCATCCTTGCATTGAGC 58.194 43.478 0.00 0.00 45.96 4.26
2261 2531 2.752075 TGGCATATTCCATCCTTGCA 57.248 45.000 0.00 0.00 35.04 4.08
2297 2567 1.804151 TCTTTCGCCATTTCCTTCACG 59.196 47.619 0.00 0.00 0.00 4.35
2312 2582 7.797123 CCATTACGTGTAAACTTCACTTCTTTC 59.203 37.037 0.00 0.00 34.14 2.62
2335 2605 3.053395 TGCCCTTTGCTTATTCTCTCCAT 60.053 43.478 0.00 0.00 42.00 3.41
2414 2684 9.515226 AATGTACTGTAGTAAACATGAACCAAT 57.485 29.630 0.00 0.00 37.50 3.16
2415 2685 8.911918 AATGTACTGTAGTAAACATGAACCAA 57.088 30.769 0.00 0.00 37.50 3.67
2431 2701 9.618890 AAGTCATGCAGAATAATAATGTACTGT 57.381 29.630 0.00 0.00 0.00 3.55
2432 2702 9.874215 CAAGTCATGCAGAATAATAATGTACTG 57.126 33.333 0.00 0.00 0.00 2.74
2433 2703 9.060347 CCAAGTCATGCAGAATAATAATGTACT 57.940 33.333 0.00 0.00 0.00 2.73
2434 2704 9.056005 TCCAAGTCATGCAGAATAATAATGTAC 57.944 33.333 0.00 0.00 0.00 2.90
2435 2705 9.797642 ATCCAAGTCATGCAGAATAATAATGTA 57.202 29.630 0.00 0.00 0.00 2.29
2436 2706 8.701908 ATCCAAGTCATGCAGAATAATAATGT 57.298 30.769 0.00 0.00 0.00 2.71
2591 2863 7.219154 CACAAATGAAAAAGCGTAAGTACAACA 59.781 33.333 0.00 0.00 41.68 3.33
2602 2874 4.270808 AGAAAAGGCACAAATGAAAAAGCG 59.729 37.500 0.00 0.00 0.00 4.68
2741 3013 5.862323 CCATTTCAGTTTTCTTCTGAGCATG 59.138 40.000 0.00 0.00 41.87 4.06
2759 3031 9.250624 GTGAAGTATAGATACACTCACCATTTC 57.749 37.037 16.61 5.32 39.69 2.17
2773 3045 9.905713 AAACACCATGTTATGTGAAGTATAGAT 57.094 29.630 6.80 0.00 40.14 1.98
2781 3053 9.104965 GCTACTATAAACACCATGTTATGTGAA 57.895 33.333 6.80 0.00 40.14 3.18
2788 3060 7.938140 AACATGCTACTATAAACACCATGTT 57.062 32.000 9.51 9.51 43.41 2.71
2794 3066 6.090358 ACACACGAACATGCTACTATAAACAC 59.910 38.462 0.00 0.00 0.00 3.32
2795 3067 6.090223 CACACACGAACATGCTACTATAAACA 59.910 38.462 0.00 0.00 0.00 2.83
2800 3134 4.450082 TCACACACGAACATGCTACTAT 57.550 40.909 0.00 0.00 0.00 2.12
2823 3157 6.886178 ATGTAACTCTACAATAACCAGGGT 57.114 37.500 0.00 0.00 41.36 4.34
2853 3187 5.007385 AGGAACGTATCTGTCATACCAAC 57.993 43.478 0.00 0.00 0.00 3.77
2869 3203 2.076863 GTTGGGATGACAAGAGGAACG 58.923 52.381 0.00 0.00 0.00 3.95
2884 3218 7.331934 CGAGTAATCAATATACTGGATGTTGGG 59.668 40.741 9.17 0.00 37.28 4.12
2917 3261 7.363793 GGCCCATTTCTACAAATTTATGACTGT 60.364 37.037 0.00 0.00 28.97 3.55
3160 3508 9.265901 GAAAGTGACTACATGCATCTATTGTAT 57.734 33.333 0.00 0.00 0.00 2.29
3161 3509 8.478066 AGAAAGTGACTACATGCATCTATTGTA 58.522 33.333 0.00 0.00 0.00 2.41
3162 3510 7.334090 AGAAAGTGACTACATGCATCTATTGT 58.666 34.615 0.00 0.00 0.00 2.71
3163 3511 7.783090 AGAAAGTGACTACATGCATCTATTG 57.217 36.000 0.00 0.00 0.00 1.90
3173 3521 8.950210 CCATTGTTGAATAGAAAGTGACTACAT 58.050 33.333 0.00 0.00 0.00 2.29
3234 3649 6.942532 AGAAAGTAAGCAAACACATTCTCA 57.057 33.333 0.00 0.00 0.00 3.27
3253 3668 1.888215 CTGAGCAGAGGCACAAGAAA 58.112 50.000 0.00 0.00 44.61 2.52
3259 3674 3.126225 GCAGCTGAGCAGAGGCAC 61.126 66.667 20.43 0.00 44.61 5.01
3308 3723 3.742433 ATAAGGAGAGAAGATGGCACG 57.258 47.619 0.00 0.00 0.00 5.34
3380 3795 6.092122 CACAGTTCATATATTTGTCACACGGT 59.908 38.462 0.00 0.00 0.00 4.83
3403 3818 1.581447 GCACCTGCCAGCTTTACAC 59.419 57.895 0.00 0.00 34.31 2.90
3417 3832 4.819362 TCAGTCGATGAAACAGGGCACC 62.819 54.545 0.00 0.00 42.59 5.01
3636 4051 7.827236 TGTAACTCCCAAGTAAACATTAGATGG 59.173 37.037 0.00 0.00 33.48 3.51
3706 4137 5.995282 TCAGAATACGATTAATCCGGCATTT 59.005 36.000 9.87 0.00 0.00 2.32
3730 4161 5.245531 TCAAATAAGTTCATTGCTCCGACT 58.754 37.500 0.00 0.00 0.00 4.18
3732 4163 5.705441 ACTTCAAATAAGTTCATTGCTCCGA 59.295 36.000 0.00 0.00 0.00 4.55
3741 4172 3.838565 TGGGCCACTTCAAATAAGTTCA 58.161 40.909 0.00 0.00 0.00 3.18
3746 4177 3.829601 ACGAAATGGGCCACTTCAAATAA 59.170 39.130 25.55 0.00 0.00 1.40
3774 4205 5.833340 ACCCTTGTTAATACATGGCCTTTA 58.167 37.500 3.32 0.00 44.34 1.85
3779 4210 5.852282 ATCAACCCTTGTTAATACATGGC 57.148 39.130 0.00 0.00 44.34 4.40
3788 4226 6.834451 TGTGGAAGTAAAATCAACCCTTGTTA 59.166 34.615 0.00 0.00 32.09 2.41
3818 4256 4.167697 CCCTACTACCCAACCTAGAGTAGT 59.832 50.000 6.86 6.86 45.48 2.73
3834 4272 1.624753 GACTCCCCTGGCCCTACTA 59.375 63.158 0.00 0.00 0.00 1.82
3916 4376 2.946329 GGCGTCAGAGAATAGACAGAGA 59.054 50.000 0.00 0.00 34.48 3.10
3965 4425 3.692101 TCGTTTTCTTCTTCCTGCAACAA 59.308 39.130 0.00 0.00 0.00 2.83
3985 4445 1.195115 TCCCCATGTCCTCTTCTTCG 58.805 55.000 0.00 0.00 0.00 3.79
4002 4462 5.106118 GCCTTATCTTTGTCTTCCAACTTCC 60.106 44.000 0.00 0.00 31.20 3.46
4018 4478 5.590259 ACTGAATTTATTGCACGCCTTATCT 59.410 36.000 0.00 0.00 0.00 1.98
4020 4480 5.125417 ACACTGAATTTATTGCACGCCTTAT 59.875 36.000 0.00 0.00 0.00 1.73
4021 4481 4.457603 ACACTGAATTTATTGCACGCCTTA 59.542 37.500 0.00 0.00 0.00 2.69
4022 4482 3.255642 ACACTGAATTTATTGCACGCCTT 59.744 39.130 0.00 0.00 0.00 4.35
4023 4483 2.819608 ACACTGAATTTATTGCACGCCT 59.180 40.909 0.00 0.00 0.00 5.52
4025 4485 3.820689 TGACACTGAATTTATTGCACGC 58.179 40.909 0.00 0.00 0.00 5.34
4145 4605 8.223100 GTGCAAACAAATATTCTGTTGAAATCC 58.777 33.333 13.28 4.29 37.10 3.01
4154 4615 5.062934 CAGGCATGTGCAAACAAATATTCTG 59.937 40.000 7.36 0.00 44.36 3.02
4161 4622 2.687700 AACAGGCATGTGCAAACAAA 57.312 40.000 4.03 0.00 44.36 2.83
4243 4803 3.983044 AGGCTTAGGAATTCTTGACGT 57.017 42.857 5.23 0.00 0.00 4.34
4305 4865 2.165641 GCCCTGGTTAACCTTATTGTGC 59.834 50.000 24.78 13.42 36.82 4.57
4325 4885 2.128771 TATTGTGGAAGGCTGAAGGC 57.871 50.000 0.00 0.00 41.43 4.35
4332 4892 6.398095 ACTGCTTAATTTTATTGTGGAAGGC 58.602 36.000 0.00 0.00 0.00 4.35
4334 4894 7.384660 TGCAACTGCTTAATTTTATTGTGGAAG 59.615 33.333 2.95 0.00 42.66 3.46
4337 4897 7.599630 ATGCAACTGCTTAATTTTATTGTGG 57.400 32.000 2.95 0.00 42.66 4.17
4346 4906 5.922544 GTGAACTGAATGCAACTGCTTAATT 59.077 36.000 2.95 0.00 42.66 1.40
4419 4986 6.814146 AGAAGGTTGAGATCGTCAGATAAAAC 59.186 38.462 0.00 0.00 37.19 2.43
4471 5038 4.690748 TGTACAGTTCTATCTGCACAAAGC 59.309 41.667 0.00 0.00 38.33 3.51
4500 5067 4.005650 TCTGTCGTAGAACCTTCACGTAT 58.994 43.478 0.00 0.00 39.69 3.06
4502 5069 2.224606 TCTGTCGTAGAACCTTCACGT 58.775 47.619 8.72 0.00 39.69 4.49
4514 5081 2.101415 CTCATTGGCATCCTCTGTCGTA 59.899 50.000 0.00 0.00 29.52 3.43
4517 5084 1.964552 CCTCATTGGCATCCTCTGTC 58.035 55.000 0.00 0.00 0.00 3.51
4583 5150 0.467384 CCTTCCTCATGAGTGCCGAT 59.533 55.000 21.11 0.00 0.00 4.18
4597 5164 4.265073 AGTTCACATGAGCAATACCTTCC 58.735 43.478 0.00 0.00 0.00 3.46
4598 5165 6.036517 CAGTAGTTCACATGAGCAATACCTTC 59.963 42.308 0.00 0.00 0.00 3.46
4658 5317 6.488683 TCATTTTTGTTAACCCTACAGACCTG 59.511 38.462 2.48 0.00 0.00 4.00
4703 5362 1.177401 GGAGAACCCCAAACTCATGC 58.823 55.000 0.00 0.00 33.00 4.06
4735 5394 7.168219 TGGTAAATTATCAGGATAGTGGATGC 58.832 38.462 0.00 0.00 0.00 3.91
4755 5417 5.240891 CAAGATGAAGAAGCAGACTGGTAA 58.759 41.667 7.75 0.00 0.00 2.85
4766 5428 2.517959 TGGTTGGCCAAGATGAAGAAG 58.482 47.619 21.21 0.00 42.83 2.85
4781 5443 2.290260 TGTTACAGGCCAGAGATGGTTG 60.290 50.000 5.01 0.00 0.00 3.77
4782 5444 1.985159 TGTTACAGGCCAGAGATGGTT 59.015 47.619 5.01 0.00 0.00 3.67
4783 5445 1.656587 TGTTACAGGCCAGAGATGGT 58.343 50.000 5.01 0.00 0.00 3.55
4784 5446 2.437281 AGATGTTACAGGCCAGAGATGG 59.563 50.000 5.01 0.00 0.00 3.51
4855 5520 6.513556 CGTGTCTACATCATCTATCTCCGTTT 60.514 42.308 0.00 0.00 0.00 3.60
4858 5523 4.142795 CCGTGTCTACATCATCTATCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
4862 5527 3.255888 TGGCCGTGTCTACATCATCTATC 59.744 47.826 0.00 0.00 0.00 2.08
4895 5560 1.376942 CCTGTCCAGAAGCTGCCAG 60.377 63.158 0.00 0.00 32.52 4.85
4966 5656 7.595311 TCGTGTCATGTTGATAATATATGGC 57.405 36.000 0.00 0.00 0.00 4.40
5035 5739 2.114625 ACCTCCTCCGACGTGACA 59.885 61.111 0.00 0.00 0.00 3.58
5141 5845 1.005975 GCGTGCAGCTATCGTTGTTAG 60.006 52.381 0.00 0.00 44.04 2.34
5162 5866 1.043816 ATATCGAGACAGGGGTGCAG 58.956 55.000 0.00 0.00 0.00 4.41
5163 5867 1.138859 CAATATCGAGACAGGGGTGCA 59.861 52.381 0.00 0.00 0.00 4.57
5164 5868 1.871080 CAATATCGAGACAGGGGTGC 58.129 55.000 0.00 0.00 0.00 5.01
5165 5869 1.414181 AGCAATATCGAGACAGGGGTG 59.586 52.381 0.00 0.00 0.00 4.61
5166 5870 1.794714 AGCAATATCGAGACAGGGGT 58.205 50.000 0.00 0.00 0.00 4.95
5167 5871 2.103094 TCAAGCAATATCGAGACAGGGG 59.897 50.000 0.00 0.00 0.00 4.79
5168 5872 3.126831 GTCAAGCAATATCGAGACAGGG 58.873 50.000 0.00 0.00 0.00 4.45
5169 5873 3.126831 GGTCAAGCAATATCGAGACAGG 58.873 50.000 0.00 0.00 0.00 4.00
5170 5874 2.791560 CGGTCAAGCAATATCGAGACAG 59.208 50.000 0.00 0.00 0.00 3.51
5171 5875 2.165641 ACGGTCAAGCAATATCGAGACA 59.834 45.455 0.00 0.00 0.00 3.41
5172 5876 2.810650 ACGGTCAAGCAATATCGAGAC 58.189 47.619 0.00 0.00 0.00 3.36
5173 5877 4.848562 ATACGGTCAAGCAATATCGAGA 57.151 40.909 0.00 0.00 0.00 4.04
5174 5878 4.982295 TCAATACGGTCAAGCAATATCGAG 59.018 41.667 0.00 0.00 0.00 4.04
5181 5885 2.839975 TGTGTCAATACGGTCAAGCAA 58.160 42.857 0.00 0.00 0.00 3.91
5206 5910 1.590932 CAAGCACAAGACAGAGCAGT 58.409 50.000 0.00 0.00 0.00 4.40
5210 5914 2.095364 GCAATCCAAGCACAAGACAGAG 60.095 50.000 0.00 0.00 0.00 3.35
5211 5915 1.881973 GCAATCCAAGCACAAGACAGA 59.118 47.619 0.00 0.00 0.00 3.41
5213 5917 1.689984 TGCAATCCAAGCACAAGACA 58.310 45.000 0.00 0.00 37.02 3.41
5214 5918 2.229543 TGATGCAATCCAAGCACAAGAC 59.770 45.455 0.00 0.00 44.73 3.01
5215 5919 2.229543 GTGATGCAATCCAAGCACAAGA 59.770 45.455 0.00 0.00 44.73 3.02
5217 5921 1.962100 TGTGATGCAATCCAAGCACAA 59.038 42.857 0.00 0.00 44.73 3.33
5218 5922 1.542472 CTGTGATGCAATCCAAGCACA 59.458 47.619 0.00 0.00 44.73 4.57
5219 5923 1.814394 TCTGTGATGCAATCCAAGCAC 59.186 47.619 0.00 0.00 44.73 4.40
5220 5924 1.814394 GTCTGTGATGCAATCCAAGCA 59.186 47.619 0.00 0.00 44.73 3.91
5221 5925 1.202110 CGTCTGTGATGCAATCCAAGC 60.202 52.381 0.00 0.00 44.73 4.01
5222 5926 1.399440 CCGTCTGTGATGCAATCCAAG 59.601 52.381 0.00 0.00 44.73 3.61
5223 5927 1.452110 CCGTCTGTGATGCAATCCAA 58.548 50.000 0.00 0.00 44.73 3.53
5224 5928 0.392863 CCCGTCTGTGATGCAATCCA 60.393 55.000 0.00 0.00 44.73 3.41
5225 5929 0.107703 TCCCGTCTGTGATGCAATCC 60.108 55.000 0.00 0.00 44.73 3.01
5226 5930 1.667724 CTTCCCGTCTGTGATGCAATC 59.332 52.381 0.00 0.00 45.83 2.67
5227 5931 1.278985 TCTTCCCGTCTGTGATGCAAT 59.721 47.619 0.00 0.00 0.00 3.56
5231 5935 1.759445 AGGATCTTCCCGTCTGTGATG 59.241 52.381 0.00 0.00 37.19 3.07
5294 6003 0.388907 TTCATTCGTCGTCGGGTTCC 60.389 55.000 1.55 0.00 37.69 3.62
5297 6006 1.080298 GGTTCATTCGTCGTCGGGT 60.080 57.895 1.55 0.00 37.69 5.28
5320 6029 0.383949 GCAGGCGTTCTCACCAAAAA 59.616 50.000 0.00 0.00 0.00 1.94
5322 6031 1.896660 GGCAGGCGTTCTCACCAAA 60.897 57.895 0.00 0.00 0.00 3.28
5325 6034 2.435059 GAGGCAGGCGTTCTCACC 60.435 66.667 0.00 0.00 0.00 4.02
5326 6035 2.435059 GGAGGCAGGCGTTCTCAC 60.435 66.667 8.27 0.00 0.00 3.51
5328 6037 4.070552 ACGGAGGCAGGCGTTCTC 62.071 66.667 0.00 0.00 0.00 2.87
5329 6038 4.379243 CACGGAGGCAGGCGTTCT 62.379 66.667 0.00 0.00 0.00 3.01
5355 6098 4.015872 ACATACACACATTTCCTTCGGT 57.984 40.909 0.00 0.00 0.00 4.69
5358 6101 8.398665 GGAAGATTACATACACACATTTCCTTC 58.601 37.037 0.00 0.00 0.00 3.46
5361 6104 7.865706 AGGAAGATTACATACACACATTTCC 57.134 36.000 0.00 0.00 0.00 3.13
5362 6105 9.167311 AGAAGGAAGATTACATACACACATTTC 57.833 33.333 0.00 0.00 0.00 2.17
5363 6106 8.950210 CAGAAGGAAGATTACATACACACATTT 58.050 33.333 0.00 0.00 0.00 2.32
5364 6107 8.321353 TCAGAAGGAAGATTACATACACACATT 58.679 33.333 0.00 0.00 0.00 2.71
5365 6108 7.851228 TCAGAAGGAAGATTACATACACACAT 58.149 34.615 0.00 0.00 0.00 3.21
5366 6109 7.239763 TCAGAAGGAAGATTACATACACACA 57.760 36.000 0.00 0.00 0.00 3.72
5384 6127 3.309682 TCACGTGTCAAAAGCTTCAGAAG 59.690 43.478 16.51 5.72 0.00 2.85
5394 6137 1.403679 CAGGGCTTTCACGTGTCAAAA 59.596 47.619 16.51 8.05 0.00 2.44
5397 6140 0.813610 CACAGGGCTTTCACGTGTCA 60.814 55.000 16.51 0.17 35.03 3.58
5418 6161 1.896465 ACAGAACGGAAGAAGAGAGGG 59.104 52.381 0.00 0.00 0.00 4.30
5421 6164 4.939052 AAAGACAGAACGGAAGAAGAGA 57.061 40.909 0.00 0.00 0.00 3.10
5422 6165 5.993106 AAAAAGACAGAACGGAAGAAGAG 57.007 39.130 0.00 0.00 0.00 2.85
5441 6184 3.388913 AGGGTTCCCAACATTCCAAAAA 58.611 40.909 10.73 0.00 0.00 1.94
5442 6185 2.969262 GAGGGTTCCCAACATTCCAAAA 59.031 45.455 10.73 0.00 0.00 2.44
5443 6186 2.178984 AGAGGGTTCCCAACATTCCAAA 59.821 45.455 10.73 0.00 0.00 3.28
5444 6187 1.786441 AGAGGGTTCCCAACATTCCAA 59.214 47.619 10.73 0.00 0.00 3.53
5445 6188 1.075374 CAGAGGGTTCCCAACATTCCA 59.925 52.381 10.73 0.00 0.00 3.53
5446 6189 1.075536 ACAGAGGGTTCCCAACATTCC 59.924 52.381 10.73 0.00 0.00 3.01
5447 6190 2.586648 ACAGAGGGTTCCCAACATTC 57.413 50.000 10.73 0.00 0.00 2.67
5448 6191 3.328535 AAACAGAGGGTTCCCAACATT 57.671 42.857 10.73 0.00 39.29 2.71
5449 6192 3.117131 AGAAAACAGAGGGTTCCCAACAT 60.117 43.478 10.73 0.00 39.29 2.71
5450 6193 2.243736 AGAAAACAGAGGGTTCCCAACA 59.756 45.455 10.73 0.00 39.29 3.33
5451 6194 2.885266 GAGAAAACAGAGGGTTCCCAAC 59.115 50.000 10.73 4.08 39.29 3.77
5452 6195 2.158519 GGAGAAAACAGAGGGTTCCCAA 60.159 50.000 10.73 0.00 39.29 4.12
5453 6196 1.423921 GGAGAAAACAGAGGGTTCCCA 59.576 52.381 10.73 0.00 39.29 4.37
5454 6197 1.423921 TGGAGAAAACAGAGGGTTCCC 59.576 52.381 0.00 0.00 39.29 3.97
5455 6198 2.106684 AGTGGAGAAAACAGAGGGTTCC 59.893 50.000 0.00 0.00 39.29 3.62
5456 6199 3.403968 GAGTGGAGAAAACAGAGGGTTC 58.596 50.000 0.00 0.00 39.29 3.62
5457 6200 2.224305 CGAGTGGAGAAAACAGAGGGTT 60.224 50.000 0.00 0.00 42.98 4.11
5458 6201 1.344763 CGAGTGGAGAAAACAGAGGGT 59.655 52.381 0.00 0.00 0.00 4.34
5459 6202 1.941668 GCGAGTGGAGAAAACAGAGGG 60.942 57.143 0.00 0.00 0.00 4.30
5460 6203 1.433534 GCGAGTGGAGAAAACAGAGG 58.566 55.000 0.00 0.00 0.00 3.69
5461 6204 1.433534 GGCGAGTGGAGAAAACAGAG 58.566 55.000 0.00 0.00 0.00 3.35
5462 6205 0.319555 CGGCGAGTGGAGAAAACAGA 60.320 55.000 0.00 0.00 0.00 3.41
5463 6206 1.291877 CCGGCGAGTGGAGAAAACAG 61.292 60.000 9.30 0.00 0.00 3.16
5464 6207 1.301401 CCGGCGAGTGGAGAAAACA 60.301 57.895 9.30 0.00 0.00 2.83
5465 6208 2.677979 GCCGGCGAGTGGAGAAAAC 61.678 63.158 12.58 0.00 0.00 2.43
5466 6209 2.358247 GCCGGCGAGTGGAGAAAA 60.358 61.111 12.58 0.00 0.00 2.29
5510 6253 2.888534 CGACGGGCGGGTTATGTG 60.889 66.667 0.00 0.00 36.03 3.21
5527 6270 4.064491 GACACACGCAGCGACAGC 62.064 66.667 24.65 2.62 45.58 4.40
5625 6391 1.148048 GGAGCCAGAGGATTCCAGC 59.852 63.158 5.29 2.37 31.25 4.85
5632 6398 3.068691 CGTTCCGGAGCCAGAGGA 61.069 66.667 13.19 0.00 0.00 3.71
5702 6474 0.314302 GTGGAGATCCCGGACATACG 59.686 60.000 0.73 0.00 37.93 3.06
5703 6475 1.341531 CTGTGGAGATCCCGGACATAC 59.658 57.143 0.73 0.00 37.93 2.39
5704 6476 1.704641 CTGTGGAGATCCCGGACATA 58.295 55.000 0.73 0.00 37.93 2.29
5706 6478 1.685765 CCTGTGGAGATCCCGGACA 60.686 63.158 0.73 0.00 37.93 4.02
5707 6479 2.435693 CCCTGTGGAGATCCCGGAC 61.436 68.421 0.73 0.00 37.93 4.79
5737 6531 5.479716 AGAAAAATACGTAATTCTGGGCG 57.520 39.130 16.28 0.00 31.25 6.13
5748 6542 5.049405 CAGCAGTGGAAGAAGAAAAATACGT 60.049 40.000 0.00 0.00 0.00 3.57
5766 6574 1.537638 CTATCCTATCGTCGCAGCAGT 59.462 52.381 0.00 0.00 0.00 4.40
5774 6582 6.146216 CGATGCATTATCCTATCCTATCGTC 58.854 44.000 0.00 0.00 32.64 4.20
5775 6583 5.594725 ACGATGCATTATCCTATCCTATCGT 59.405 40.000 0.00 0.00 41.95 3.73
5847 6659 5.758296 GGATGAACAGCTACCGATGAATAAA 59.242 40.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.