Multiple sequence alignment - TraesCS3A01G399800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G399800 chr3A 100.000 3604 0 0 1 3604 646683132 646686735 0.000000e+00 6656.0
1 TraesCS3A01G399800 chr3A 87.413 866 91 15 2746 3604 556454152 556453298 0.000000e+00 979.0
2 TraesCS3A01G399800 chr3B 91.412 2026 95 35 775 2746 671843730 671845730 0.000000e+00 2704.0
3 TraesCS3A01G399800 chr3B 88.173 854 87 10 2752 3604 419771819 419770979 0.000000e+00 1005.0
4 TraesCS3A01G399800 chr3B 82.629 875 123 14 2744 3604 228734273 228733414 0.000000e+00 747.0
5 TraesCS3A01G399800 chr3B 82.460 878 116 19 2745 3604 693472514 693473371 0.000000e+00 734.0
6 TraesCS3A01G399800 chr3B 86.657 667 78 10 2946 3604 71157197 71156534 0.000000e+00 728.0
7 TraesCS3A01G399800 chr3D 89.926 1350 82 22 543 1872 508612375 508613690 0.000000e+00 1690.0
8 TraesCS3A01G399800 chr3D 93.842 812 30 9 1914 2712 509077776 509078580 0.000000e+00 1205.0
9 TraesCS3A01G399800 chr3D 96.366 688 21 2 1924 2610 508613944 508614628 0.000000e+00 1129.0
10 TraesCS3A01G399800 chr3D 94.990 519 23 1 1098 1613 509076946 509077464 0.000000e+00 811.0
11 TraesCS3A01G399800 chr3D 83.282 652 101 5 2960 3604 390208959 390208309 8.620000e-166 593.0
12 TraesCS3A01G399800 chr3D 87.097 279 31 3 195 472 416394110 416393836 9.720000e-81 311.0
13 TraesCS3A01G399800 chr3D 87.671 219 14 7 1696 1902 509077482 509077699 3.600000e-60 243.0
14 TraesCS3A01G399800 chr3D 75.616 365 58 16 543 886 508765815 508766169 6.230000e-33 152.0
15 TraesCS3A01G399800 chr3D 72.393 326 80 10 3276 3596 14405141 14404821 1.070000e-15 95.3
16 TraesCS3A01G399800 chr3D 97.500 40 1 0 2707 2746 509079298 509079337 6.460000e-08 69.4
17 TraesCS3A01G399800 chr7A 94.425 861 45 2 2744 3604 38785359 38786216 0.000000e+00 1321.0
18 TraesCS3A01G399800 chr7A 90.835 862 73 6 2744 3604 94499637 94498781 0.000000e+00 1149.0
19 TraesCS3A01G399800 chr7A 88.660 873 78 17 2742 3604 222519990 222519129 0.000000e+00 1044.0
20 TraesCS3A01G399800 chr7D 88.697 867 66 18 2743 3604 80435843 80436682 0.000000e+00 1029.0
21 TraesCS3A01G399800 chr7D 82.406 665 108 6 2947 3604 423654156 423653494 4.040000e-159 571.0
22 TraesCS3A01G399800 chr7D 79.821 560 110 2 3048 3604 460663474 460664033 4.330000e-109 405.0
23 TraesCS3A01G399800 chr7D 84.643 280 36 4 193 472 430095862 430095590 4.590000e-69 272.0
24 TraesCS3A01G399800 chr5B 84.932 876 102 16 2743 3604 112556626 112557485 0.000000e+00 859.0
25 TraesCS3A01G399800 chr5B 76.936 581 117 13 1953 2526 706853158 706853728 7.510000e-82 315.0
26 TraesCS3A01G399800 chr5B 82.566 304 37 9 180 476 270679383 270679677 1.660000e-63 254.0
27 TraesCS3A01G399800 chr5B 83.333 288 35 9 193 476 595288569 595288847 1.660000e-63 254.0
28 TraesCS3A01G399800 chr6B 84.651 873 106 15 2743 3604 696016690 696017545 0.000000e+00 845.0
29 TraesCS3A01G399800 chr6B 83.012 883 109 23 2743 3604 532268258 532267396 0.000000e+00 761.0
30 TraesCS3A01G399800 chr6B 82.220 883 117 23 2743 3604 692093838 692092975 0.000000e+00 725.0
31 TraesCS3A01G399800 chr1B 87.261 628 76 4 2981 3604 605582962 605582335 0.000000e+00 713.0
32 TraesCS3A01G399800 chr1B 84.615 663 95 4 2945 3604 69835932 69835274 0.000000e+00 652.0
33 TraesCS3A01G399800 chr1B 81.675 764 97 24 2744 3483 26882117 26882861 2.400000e-166 595.0
34 TraesCS3A01G399800 chr1B 84.615 286 32 9 190 472 558228128 558228404 1.270000e-69 274.0
35 TraesCS3A01G399800 chr1A 80.638 878 137 22 2743 3604 280616271 280615411 0.000000e+00 649.0
36 TraesCS3A01G399800 chr1A 81.556 450 80 3 3156 3604 528549051 528548604 5.680000e-98 368.0
37 TraesCS3A01G399800 chr2D 89.324 281 26 3 193 473 70464015 70463739 2.060000e-92 350.0
38 TraesCS3A01G399800 chr2D 74.593 614 129 18 2978 3575 576441769 576441167 1.000000e-60 244.0
39 TraesCS3A01G399800 chr2D 74.020 612 136 16 2978 3575 576424053 576423451 1.010000e-55 228.0
40 TraesCS3A01G399800 chr2D 72.881 354 83 12 3255 3603 624777017 624776672 3.800000e-20 110.0
41 TraesCS3A01G399800 chr2B 89.123 285 25 4 190 473 190059204 190059483 2.060000e-92 350.0
42 TraesCS3A01G399800 chr7B 89.286 280 26 3 193 472 664085625 664085350 7.410000e-92 348.0
43 TraesCS3A01G399800 chr4B 87.153 288 34 1 189 476 607845148 607844864 1.250000e-84 324.0
44 TraesCS3A01G399800 chr4A 77.091 550 115 9 1981 2526 608044258 608043716 1.260000e-79 307.0
45 TraesCS3A01G399800 chr5D 82.332 283 47 2 3322 3604 493271672 493271951 3.600000e-60 243.0
46 TraesCS3A01G399800 chr1D 75.723 346 78 6 3254 3596 225004110 225004452 6.190000e-38 169.0
47 TraesCS3A01G399800 chr1D 100.000 30 0 0 3486 3515 187455591 187455562 5.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G399800 chr3A 646683132 646686735 3603 False 6656.0 6656 100.00000 1 3604 1 chr3A.!!$F1 3603
1 TraesCS3A01G399800 chr3A 556453298 556454152 854 True 979.0 979 87.41300 2746 3604 1 chr3A.!!$R1 858
2 TraesCS3A01G399800 chr3B 671843730 671845730 2000 False 2704.0 2704 91.41200 775 2746 1 chr3B.!!$F1 1971
3 TraesCS3A01G399800 chr3B 419770979 419771819 840 True 1005.0 1005 88.17300 2752 3604 1 chr3B.!!$R3 852
4 TraesCS3A01G399800 chr3B 228733414 228734273 859 True 747.0 747 82.62900 2744 3604 1 chr3B.!!$R2 860
5 TraesCS3A01G399800 chr3B 693472514 693473371 857 False 734.0 734 82.46000 2745 3604 1 chr3B.!!$F2 859
6 TraesCS3A01G399800 chr3B 71156534 71157197 663 True 728.0 728 86.65700 2946 3604 1 chr3B.!!$R1 658
7 TraesCS3A01G399800 chr3D 508612375 508614628 2253 False 1409.5 1690 93.14600 543 2610 2 chr3D.!!$F2 2067
8 TraesCS3A01G399800 chr3D 390208309 390208959 650 True 593.0 593 83.28200 2960 3604 1 chr3D.!!$R2 644
9 TraesCS3A01G399800 chr3D 509076946 509079337 2391 False 582.1 1205 93.50075 1098 2746 4 chr3D.!!$F3 1648
10 TraesCS3A01G399800 chr7A 38785359 38786216 857 False 1321.0 1321 94.42500 2744 3604 1 chr7A.!!$F1 860
11 TraesCS3A01G399800 chr7A 94498781 94499637 856 True 1149.0 1149 90.83500 2744 3604 1 chr7A.!!$R1 860
12 TraesCS3A01G399800 chr7A 222519129 222519990 861 True 1044.0 1044 88.66000 2742 3604 1 chr7A.!!$R2 862
13 TraesCS3A01G399800 chr7D 80435843 80436682 839 False 1029.0 1029 88.69700 2743 3604 1 chr7D.!!$F1 861
14 TraesCS3A01G399800 chr7D 423653494 423654156 662 True 571.0 571 82.40600 2947 3604 1 chr7D.!!$R1 657
15 TraesCS3A01G399800 chr7D 460663474 460664033 559 False 405.0 405 79.82100 3048 3604 1 chr7D.!!$F2 556
16 TraesCS3A01G399800 chr5B 112556626 112557485 859 False 859.0 859 84.93200 2743 3604 1 chr5B.!!$F1 861
17 TraesCS3A01G399800 chr5B 706853158 706853728 570 False 315.0 315 76.93600 1953 2526 1 chr5B.!!$F4 573
18 TraesCS3A01G399800 chr6B 696016690 696017545 855 False 845.0 845 84.65100 2743 3604 1 chr6B.!!$F1 861
19 TraesCS3A01G399800 chr6B 532267396 532268258 862 True 761.0 761 83.01200 2743 3604 1 chr6B.!!$R1 861
20 TraesCS3A01G399800 chr6B 692092975 692093838 863 True 725.0 725 82.22000 2743 3604 1 chr6B.!!$R2 861
21 TraesCS3A01G399800 chr1B 605582335 605582962 627 True 713.0 713 87.26100 2981 3604 1 chr1B.!!$R2 623
22 TraesCS3A01G399800 chr1B 69835274 69835932 658 True 652.0 652 84.61500 2945 3604 1 chr1B.!!$R1 659
23 TraesCS3A01G399800 chr1B 26882117 26882861 744 False 595.0 595 81.67500 2744 3483 1 chr1B.!!$F1 739
24 TraesCS3A01G399800 chr1A 280615411 280616271 860 True 649.0 649 80.63800 2743 3604 1 chr1A.!!$R1 861
25 TraesCS3A01G399800 chr2D 576441167 576441769 602 True 244.0 244 74.59300 2978 3575 1 chr2D.!!$R3 597
26 TraesCS3A01G399800 chr2D 576423451 576424053 602 True 228.0 228 74.02000 2978 3575 1 chr2D.!!$R2 597
27 TraesCS3A01G399800 chr4A 608043716 608044258 542 True 307.0 307 77.09100 1981 2526 1 chr4A.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.028374 TTATCGACGCGAGCGAATGA 59.972 50.0 26.09 17.0 39.91 2.57 F
53 54 0.028505 CGATGGGAGCATGCTTTTCG 59.971 55.0 23.61 21.5 0.00 3.46 F
224 225 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.0 0.00 0.0 42.90 5.14 F
226 227 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
230 231 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 1891 1.067915 GGGCTATCTTCTGCTAGCTCG 60.068 57.143 17.23 7.27 40.17 5.03 R
1856 1929 6.147164 TCGTAAAAATGTAGACCTTTGCTGAG 59.853 38.462 0.00 0.00 0.00 3.35 R
1884 2129 6.449635 TGGTTTGACTACATGCCAAATATC 57.550 37.500 0.00 0.00 31.09 1.63 R
2543 2859 0.546598 CTGGCCGGTTTCCCTTCTAT 59.453 55.000 2.29 0.00 0.00 1.98 R
2604 2921 3.349927 CATCCAAATTGTCTCTGCTCCA 58.650 45.455 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.516923 AGCGAAGTGAAGTTATCGACG 58.483 47.619 0.00 0.00 37.48 5.12
22 23 1.007319 GCGAAGTGAAGTTATCGACGC 60.007 52.381 0.00 0.00 37.48 5.19
23 24 1.249491 CGAAGTGAAGTTATCGACGCG 59.751 52.381 3.53 3.53 37.48 6.01
24 25 2.512885 GAAGTGAAGTTATCGACGCGA 58.487 47.619 15.93 4.51 41.13 5.87
25 26 2.175530 AGTGAAGTTATCGACGCGAG 57.824 50.000 15.93 6.55 39.91 5.03
26 27 0.566593 GTGAAGTTATCGACGCGAGC 59.433 55.000 15.93 2.83 39.91 5.03
27 28 0.860203 TGAAGTTATCGACGCGAGCG 60.860 55.000 15.93 16.80 39.91 5.03
28 29 0.588233 GAAGTTATCGACGCGAGCGA 60.588 55.000 24.72 25.01 39.91 4.93
29 30 0.179181 AAGTTATCGACGCGAGCGAA 60.179 50.000 26.09 15.69 39.91 4.70
30 31 0.029035 AGTTATCGACGCGAGCGAAT 59.971 50.000 26.09 18.28 39.91 3.34
31 32 0.156857 GTTATCGACGCGAGCGAATG 59.843 55.000 26.09 12.44 39.91 2.67
32 33 0.028374 TTATCGACGCGAGCGAATGA 59.972 50.000 26.09 17.00 39.91 2.57
33 34 0.384353 TATCGACGCGAGCGAATGAG 60.384 55.000 26.09 9.71 39.91 2.90
34 35 3.965701 CGACGCGAGCGAATGAGC 61.966 66.667 24.72 5.09 42.83 4.26
38 39 2.543383 GCGAGCGAATGAGCGATG 59.457 61.111 0.00 0.00 43.00 3.84
39 40 2.936570 GCGAGCGAATGAGCGATGG 61.937 63.158 0.00 0.00 43.00 3.51
40 41 2.305853 CGAGCGAATGAGCGATGGG 61.306 63.158 0.00 0.00 43.00 4.00
41 42 1.068083 GAGCGAATGAGCGATGGGA 59.932 57.895 0.00 0.00 43.00 4.37
42 43 0.943359 GAGCGAATGAGCGATGGGAG 60.943 60.000 0.00 0.00 43.00 4.30
43 44 2.602322 GCGAATGAGCGATGGGAGC 61.602 63.158 0.00 0.00 0.00 4.70
44 45 1.227350 CGAATGAGCGATGGGAGCA 60.227 57.895 0.00 0.00 37.01 4.26
45 46 0.602106 CGAATGAGCGATGGGAGCAT 60.602 55.000 0.00 0.00 37.01 3.79
46 47 0.873054 GAATGAGCGATGGGAGCATG 59.127 55.000 0.00 0.00 37.01 4.06
47 48 1.170919 AATGAGCGATGGGAGCATGC 61.171 55.000 10.51 10.51 37.01 4.06
48 49 2.053259 ATGAGCGATGGGAGCATGCT 62.053 55.000 22.92 22.92 38.89 3.79
49 50 1.525535 GAGCGATGGGAGCATGCTT 60.526 57.895 23.61 5.28 35.73 3.91
50 51 1.077212 AGCGATGGGAGCATGCTTT 60.077 52.632 23.61 7.39 37.01 3.51
51 52 0.682209 AGCGATGGGAGCATGCTTTT 60.682 50.000 23.61 7.00 37.01 2.27
52 53 0.248784 GCGATGGGAGCATGCTTTTC 60.249 55.000 23.61 14.49 34.19 2.29
53 54 0.028505 CGATGGGAGCATGCTTTTCG 59.971 55.000 23.61 21.50 0.00 3.46
54 55 0.248784 GATGGGAGCATGCTTTTCGC 60.249 55.000 23.61 17.64 39.77 4.70
55 56 0.682209 ATGGGAGCATGCTTTTCGCT 60.682 50.000 23.61 0.00 40.11 4.93
56 57 0.895100 TGGGAGCATGCTTTTCGCTT 60.895 50.000 23.61 0.00 40.11 4.68
57 58 1.094785 GGGAGCATGCTTTTCGCTTA 58.905 50.000 23.61 0.00 40.11 3.09
58 59 1.472480 GGGAGCATGCTTTTCGCTTAA 59.528 47.619 23.61 0.00 40.11 1.85
59 60 2.094752 GGGAGCATGCTTTTCGCTTAAA 60.095 45.455 23.61 0.00 40.11 1.52
60 61 2.917343 GGAGCATGCTTTTCGCTTAAAC 59.083 45.455 23.61 3.73 40.11 2.01
61 62 2.584791 AGCATGCTTTTCGCTTAAACG 58.415 42.857 16.30 0.00 40.11 3.60
62 63 2.225491 AGCATGCTTTTCGCTTAAACGA 59.775 40.909 16.30 0.00 41.04 3.85
63 64 3.119849 AGCATGCTTTTCGCTTAAACGAT 60.120 39.130 16.30 0.00 42.54 3.73
64 65 4.094294 AGCATGCTTTTCGCTTAAACGATA 59.906 37.500 16.30 0.00 42.54 2.92
65 66 4.791163 GCATGCTTTTCGCTTAAACGATAA 59.209 37.500 11.37 3.13 42.54 1.75
66 67 5.455525 GCATGCTTTTCGCTTAAACGATAAT 59.544 36.000 11.37 0.00 42.54 1.28
67 68 6.344234 GCATGCTTTTCGCTTAAACGATAATC 60.344 38.462 11.37 0.71 42.54 1.75
68 69 5.565695 TGCTTTTCGCTTAAACGATAATCC 58.434 37.500 1.20 0.02 42.54 3.01
69 70 4.664851 GCTTTTCGCTTAAACGATAATCCG 59.335 41.667 1.20 0.00 42.54 4.18
70 71 4.782252 TTTCGCTTAAACGATAATCCGG 57.218 40.909 1.20 0.00 42.54 5.14
71 72 3.713858 TCGCTTAAACGATAATCCGGA 57.286 42.857 6.61 6.61 37.09 5.14
72 73 4.044336 TCGCTTAAACGATAATCCGGAA 57.956 40.909 9.01 0.00 37.09 4.30
73 74 3.798337 TCGCTTAAACGATAATCCGGAAC 59.202 43.478 9.01 0.00 37.09 3.62
74 75 3.361339 CGCTTAAACGATAATCCGGAACG 60.361 47.826 9.01 14.72 44.72 3.95
96 97 6.985117 ACGGAGTTGTACTAAATTAGTGACA 58.015 36.000 15.34 11.97 37.78 3.58
97 98 6.865205 ACGGAGTTGTACTAAATTAGTGACAC 59.135 38.462 15.34 6.74 37.78 3.67
98 99 7.088905 CGGAGTTGTACTAAATTAGTGACACT 58.911 38.462 15.34 13.68 39.81 3.55
99 100 7.597743 CGGAGTTGTACTAAATTAGTGACACTT 59.402 37.037 14.50 0.00 39.81 3.16
100 101 9.918630 GGAGTTGTACTAAATTAGTGACACTTA 57.081 33.333 14.50 4.86 39.81 2.24
112 113 9.661563 AATTAGTGACACTTAATATGAAACCGA 57.338 29.630 14.50 0.00 0.00 4.69
113 114 8.697846 TTAGTGACACTTAATATGAAACCGAG 57.302 34.615 14.50 0.00 0.00 4.63
114 115 6.106673 AGTGACACTTAATATGAAACCGAGG 58.893 40.000 1.07 0.00 0.00 4.63
115 116 5.873164 GTGACACTTAATATGAAACCGAGGT 59.127 40.000 0.00 0.00 0.00 3.85
116 117 7.037438 GTGACACTTAATATGAAACCGAGGTA 58.963 38.462 0.00 0.00 0.00 3.08
117 118 7.222224 GTGACACTTAATATGAAACCGAGGTAG 59.778 40.741 0.00 0.00 0.00 3.18
118 119 7.093640 TGACACTTAATATGAAACCGAGGTAGT 60.094 37.037 0.00 0.00 0.00 2.73
119 120 8.297470 ACACTTAATATGAAACCGAGGTAGTA 57.703 34.615 0.00 0.00 0.00 1.82
120 121 8.193438 ACACTTAATATGAAACCGAGGTAGTAC 58.807 37.037 0.00 0.00 0.00 2.73
121 122 8.192774 CACTTAATATGAAACCGAGGTAGTACA 58.807 37.037 2.06 0.00 0.00 2.90
122 123 8.921205 ACTTAATATGAAACCGAGGTAGTACAT 58.079 33.333 2.06 0.00 0.00 2.29
125 126 4.644103 TGAAACCGAGGTAGTACATAGC 57.356 45.455 2.06 0.00 0.00 2.97
126 127 4.018490 TGAAACCGAGGTAGTACATAGCA 58.982 43.478 2.06 0.00 34.15 3.49
127 128 4.142315 TGAAACCGAGGTAGTACATAGCAC 60.142 45.833 2.06 0.00 34.15 4.40
128 129 2.305009 ACCGAGGTAGTACATAGCACC 58.695 52.381 2.06 0.00 34.15 5.01
129 130 1.612463 CCGAGGTAGTACATAGCACCC 59.388 57.143 2.06 0.00 34.15 4.61
130 131 1.612463 CGAGGTAGTACATAGCACCCC 59.388 57.143 2.06 0.00 34.15 4.95
131 132 1.969208 GAGGTAGTACATAGCACCCCC 59.031 57.143 2.06 0.00 34.15 5.40
145 146 3.590824 CCCCCGACAATGAGTTGC 58.409 61.111 0.00 0.00 38.96 4.17
146 147 2.398554 CCCCCGACAATGAGTTGCG 61.399 63.158 0.00 0.00 38.96 4.85
147 148 2.398554 CCCCGACAATGAGTTGCGG 61.399 63.158 13.32 13.32 45.79 5.69
148 149 2.480555 CCGACAATGAGTTGCGGC 59.519 61.111 9.70 0.00 43.02 6.53
149 150 2.324330 CCGACAATGAGTTGCGGCA 61.324 57.895 0.00 0.00 43.02 5.69
150 151 1.133253 CGACAATGAGTTGCGGCAG 59.867 57.895 1.67 0.00 38.96 4.85
151 152 1.568612 CGACAATGAGTTGCGGCAGT 61.569 55.000 1.67 0.00 38.96 4.40
152 153 0.110056 GACAATGAGTTGCGGCAGTG 60.110 55.000 1.67 0.00 38.96 3.66
153 154 1.443194 CAATGAGTTGCGGCAGTGC 60.443 57.895 6.55 6.55 0.00 4.40
154 155 2.629656 AATGAGTTGCGGCAGTGCC 61.630 57.895 25.07 25.07 46.75 5.01
166 167 2.680577 GGCAGTGCCTTGAAAATTCTG 58.319 47.619 27.48 0.00 46.69 3.02
167 168 2.064014 GCAGTGCCTTGAAAATTCTGC 58.936 47.619 2.85 0.00 39.55 4.26
168 169 2.546373 GCAGTGCCTTGAAAATTCTGCA 60.546 45.455 2.85 0.00 43.83 4.41
169 170 3.054878 CAGTGCCTTGAAAATTCTGCAC 58.945 45.455 19.11 19.11 42.53 4.57
170 171 2.961062 AGTGCCTTGAAAATTCTGCACT 59.039 40.909 21.57 21.57 44.82 4.40
171 172 3.385755 AGTGCCTTGAAAATTCTGCACTT 59.614 39.130 21.57 12.63 46.02 3.16
172 173 3.737774 GTGCCTTGAAAATTCTGCACTTC 59.262 43.478 19.30 4.04 40.86 3.01
173 174 3.243839 TGCCTTGAAAATTCTGCACTTCC 60.244 43.478 0.00 0.00 0.00 3.46
174 175 3.862264 GCCTTGAAAATTCTGCACTTCCC 60.862 47.826 0.00 0.00 0.00 3.97
175 176 3.575687 CCTTGAAAATTCTGCACTTCCCT 59.424 43.478 0.00 0.00 0.00 4.20
176 177 4.553323 CTTGAAAATTCTGCACTTCCCTG 58.447 43.478 0.00 0.00 0.00 4.45
177 178 3.565307 TGAAAATTCTGCACTTCCCTGT 58.435 40.909 0.00 0.00 0.00 4.00
178 179 3.569701 TGAAAATTCTGCACTTCCCTGTC 59.430 43.478 0.00 0.00 0.00 3.51
179 180 1.813513 AATTCTGCACTTCCCTGTCG 58.186 50.000 0.00 0.00 0.00 4.35
180 181 0.976641 ATTCTGCACTTCCCTGTCGA 59.023 50.000 0.00 0.00 0.00 4.20
181 182 0.756294 TTCTGCACTTCCCTGTCGAA 59.244 50.000 0.00 0.00 0.00 3.71
182 183 0.976641 TCTGCACTTCCCTGTCGAAT 59.023 50.000 0.00 0.00 0.00 3.34
183 184 1.081892 CTGCACTTCCCTGTCGAATG 58.918 55.000 0.00 0.00 0.00 2.67
184 185 0.955428 TGCACTTCCCTGTCGAATGC 60.955 55.000 0.00 0.00 32.04 3.56
185 186 0.674895 GCACTTCCCTGTCGAATGCT 60.675 55.000 0.00 0.00 0.00 3.79
186 187 1.813513 CACTTCCCTGTCGAATGCTT 58.186 50.000 0.00 0.00 0.00 3.91
187 188 1.466167 CACTTCCCTGTCGAATGCTTG 59.534 52.381 0.00 0.00 0.00 4.01
188 189 1.072331 ACTTCCCTGTCGAATGCTTGT 59.928 47.619 0.00 0.00 0.00 3.16
189 190 2.154462 CTTCCCTGTCGAATGCTTGTT 58.846 47.619 0.00 0.00 0.00 2.83
190 191 3.244422 ACTTCCCTGTCGAATGCTTGTTA 60.244 43.478 0.00 0.00 0.00 2.41
191 192 3.627395 TCCCTGTCGAATGCTTGTTAT 57.373 42.857 0.00 0.00 0.00 1.89
192 193 3.950397 TCCCTGTCGAATGCTTGTTATT 58.050 40.909 0.00 0.00 0.00 1.40
193 194 3.938963 TCCCTGTCGAATGCTTGTTATTC 59.061 43.478 0.00 0.00 0.00 1.75
194 195 3.065371 CCCTGTCGAATGCTTGTTATTCC 59.935 47.826 0.00 0.00 32.26 3.01
195 196 3.065371 CCTGTCGAATGCTTGTTATTCCC 59.935 47.826 0.00 0.00 32.26 3.97
196 197 3.941483 CTGTCGAATGCTTGTTATTCCCT 59.059 43.478 0.00 0.00 32.26 4.20
197 198 3.938963 TGTCGAATGCTTGTTATTCCCTC 59.061 43.478 0.00 0.00 32.26 4.30
198 199 3.312697 GTCGAATGCTTGTTATTCCCTCC 59.687 47.826 0.00 0.00 32.26 4.30
199 200 2.287915 CGAATGCTTGTTATTCCCTCCG 59.712 50.000 0.00 0.00 32.26 4.63
200 201 3.279434 GAATGCTTGTTATTCCCTCCGT 58.721 45.455 0.00 0.00 0.00 4.69
201 202 2.871096 TGCTTGTTATTCCCTCCGTT 57.129 45.000 0.00 0.00 0.00 4.44
202 203 2.706890 TGCTTGTTATTCCCTCCGTTC 58.293 47.619 0.00 0.00 0.00 3.95
203 204 2.014857 GCTTGTTATTCCCTCCGTTCC 58.985 52.381 0.00 0.00 0.00 3.62
204 205 2.355818 GCTTGTTATTCCCTCCGTTCCT 60.356 50.000 0.00 0.00 0.00 3.36
205 206 3.118519 GCTTGTTATTCCCTCCGTTCCTA 60.119 47.826 0.00 0.00 0.00 2.94
206 207 4.624604 GCTTGTTATTCCCTCCGTTCCTAA 60.625 45.833 0.00 0.00 0.00 2.69
207 208 5.493809 CTTGTTATTCCCTCCGTTCCTAAA 58.506 41.667 0.00 0.00 0.00 1.85
208 209 5.703730 TGTTATTCCCTCCGTTCCTAAAT 57.296 39.130 0.00 0.00 0.00 1.40
209 210 6.811634 TGTTATTCCCTCCGTTCCTAAATA 57.188 37.500 0.00 0.00 0.00 1.40
210 211 6.585416 TGTTATTCCCTCCGTTCCTAAATAC 58.415 40.000 0.00 0.00 0.00 1.89
211 212 6.384886 TGTTATTCCCTCCGTTCCTAAATACT 59.615 38.462 0.00 0.00 0.00 2.12
212 213 5.548181 ATTCCCTCCGTTCCTAAATACTC 57.452 43.478 0.00 0.00 0.00 2.59
213 214 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
214 215 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
215 216 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
216 217 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
217 218 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
218 219 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
219 220 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
220 221 3.243334 CGTTCCTAAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
221 222 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
222 223 1.612463 CCTAAATACTCCCTCCGTCCG 59.388 57.143 0.00 0.00 0.00 4.79
223 224 1.612463 CTAAATACTCCCTCCGTCCGG 59.388 57.143 0.00 0.00 0.00 5.14
224 225 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
225 226 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
226 227 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
227 228 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
228 229 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
229 230 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
230 231 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
231 232 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
232 233 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
233 234 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
234 235 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
235 236 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
236 237 2.299582 TCCGTCCGGAAATACTTGTCAA 59.700 45.455 5.23 0.00 42.05 3.18
237 238 3.068560 CCGTCCGGAAATACTTGTCAAA 58.931 45.455 5.23 0.00 37.50 2.69
238 239 3.499157 CCGTCCGGAAATACTTGTCAAAA 59.501 43.478 5.23 0.00 37.50 2.44
239 240 4.023878 CCGTCCGGAAATACTTGTCAAAAA 60.024 41.667 5.23 0.00 37.50 1.94
295 296 8.480133 AAATACTTCTAGATACGTCCATTCCT 57.520 34.615 0.00 0.00 0.00 3.36
296 297 7.690952 ATACTTCTAGATACGTCCATTCCTC 57.309 40.000 0.00 0.00 0.00 3.71
297 298 4.828387 ACTTCTAGATACGTCCATTCCTCC 59.172 45.833 0.00 0.00 0.00 4.30
298 299 3.409570 TCTAGATACGTCCATTCCTCCG 58.590 50.000 0.00 0.00 0.00 4.63
299 300 2.359981 AGATACGTCCATTCCTCCGA 57.640 50.000 0.00 0.00 0.00 4.55
300 301 1.955080 AGATACGTCCATTCCTCCGAC 59.045 52.381 0.00 0.00 0.00 4.79
301 302 1.679680 GATACGTCCATTCCTCCGACA 59.320 52.381 0.00 0.00 0.00 4.35
302 303 1.548081 TACGTCCATTCCTCCGACAA 58.452 50.000 0.00 0.00 0.00 3.18
303 304 0.246635 ACGTCCATTCCTCCGACAAG 59.753 55.000 0.00 0.00 0.00 3.16
304 305 0.246635 CGTCCATTCCTCCGACAAGT 59.753 55.000 0.00 0.00 0.00 3.16
305 306 1.475280 CGTCCATTCCTCCGACAAGTA 59.525 52.381 0.00 0.00 0.00 2.24
306 307 2.100916 CGTCCATTCCTCCGACAAGTAT 59.899 50.000 0.00 0.00 0.00 2.12
307 308 3.430374 CGTCCATTCCTCCGACAAGTATT 60.430 47.826 0.00 0.00 0.00 1.89
308 309 4.514401 GTCCATTCCTCCGACAAGTATTT 58.486 43.478 0.00 0.00 0.00 1.40
309 310 4.571176 GTCCATTCCTCCGACAAGTATTTC 59.429 45.833 0.00 0.00 0.00 2.17
310 311 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
311 312 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
312 313 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
313 314 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
314 315 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
315 316 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
316 317 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
317 318 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
318 319 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
319 320 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
320 321 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
321 322 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
322 323 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
323 324 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
324 325 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
325 326 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
326 327 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
327 328 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
328 329 0.110104 CCGGACGGAGGGAGTACTAT 59.890 60.000 4.40 0.00 37.50 2.12
329 330 1.478288 CCGGACGGAGGGAGTACTATT 60.478 57.143 4.40 0.00 37.50 1.73
330 331 2.305009 CGGACGGAGGGAGTACTATTT 58.695 52.381 0.00 0.00 0.00 1.40
331 332 2.034305 CGGACGGAGGGAGTACTATTTG 59.966 54.545 0.00 0.00 0.00 2.32
332 333 3.029570 GGACGGAGGGAGTACTATTTGT 58.970 50.000 0.00 0.00 0.00 2.83
333 334 3.067883 GGACGGAGGGAGTACTATTTGTC 59.932 52.174 0.00 0.00 0.00 3.18
334 335 3.952967 GACGGAGGGAGTACTATTTGTCT 59.047 47.826 0.00 0.00 0.00 3.41
335 336 4.351127 ACGGAGGGAGTACTATTTGTCTT 58.649 43.478 0.00 0.00 0.00 3.01
336 337 4.776308 ACGGAGGGAGTACTATTTGTCTTT 59.224 41.667 0.00 0.00 0.00 2.52
337 338 5.105432 ACGGAGGGAGTACTATTTGTCTTTC 60.105 44.000 0.00 0.00 0.00 2.62
338 339 5.127356 CGGAGGGAGTACTATTTGTCTTTCT 59.873 44.000 0.00 0.00 0.00 2.52
339 340 6.320672 CGGAGGGAGTACTATTTGTCTTTCTA 59.679 42.308 0.00 0.00 0.00 2.10
340 341 7.468906 CGGAGGGAGTACTATTTGTCTTTCTAG 60.469 44.444 0.00 0.00 0.00 2.43
341 342 7.560626 GGAGGGAGTACTATTTGTCTTTCTAGA 59.439 40.741 0.00 0.00 0.00 2.43
342 343 8.528044 AGGGAGTACTATTTGTCTTTCTAGAG 57.472 38.462 0.00 0.00 0.00 2.43
343 344 8.337739 AGGGAGTACTATTTGTCTTTCTAGAGA 58.662 37.037 0.00 0.00 0.00 3.10
344 345 9.138596 GGGAGTACTATTTGTCTTTCTAGAGAT 57.861 37.037 0.00 0.00 0.00 2.75
356 357 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
357 358 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
358 359 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
361 362 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
365 366 9.725019 AGAGATTTCAACAAATGACTACATACA 57.275 29.630 0.00 0.00 37.92 2.29
366 367 9.979270 GAGATTTCAACAAATGACTACATACAG 57.021 33.333 0.00 0.00 37.92 2.74
367 368 9.725019 AGATTTCAACAAATGACTACATACAGA 57.275 29.630 0.00 0.00 37.92 3.41
370 371 8.669946 TTCAACAAATGACTACATACAGAACA 57.330 30.769 0.00 0.00 37.92 3.18
371 372 8.669946 TCAACAAATGACTACATACAGAACAA 57.330 30.769 0.00 0.00 35.50 2.83
372 373 9.114952 TCAACAAATGACTACATACAGAACAAA 57.885 29.630 0.00 0.00 35.50 2.83
373 374 9.729023 CAACAAATGACTACATACAGAACAAAA 57.271 29.630 0.00 0.00 35.50 2.44
424 425 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
433 434 9.607988 ACATCCGTATGTGATAGTTCATTTAAA 57.392 29.630 0.00 0.00 44.79 1.52
467 468 5.806366 AACAAATATTTAGGAACGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
468 469 5.088680 ACAAATATTTAGGAACGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
469 470 5.114081 ACAAATATTTAGGAACGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
483 484 2.910688 ACGGAGTATTATGTGGGCTG 57.089 50.000 0.00 0.00 41.94 4.85
484 485 2.394632 ACGGAGTATTATGTGGGCTGA 58.605 47.619 0.00 0.00 41.94 4.26
485 486 2.769663 ACGGAGTATTATGTGGGCTGAA 59.230 45.455 0.00 0.00 41.94 3.02
486 487 3.199071 ACGGAGTATTATGTGGGCTGAAA 59.801 43.478 0.00 0.00 41.94 2.69
487 488 4.196193 CGGAGTATTATGTGGGCTGAAAA 58.804 43.478 0.00 0.00 0.00 2.29
488 489 4.638421 CGGAGTATTATGTGGGCTGAAAAA 59.362 41.667 0.00 0.00 0.00 1.94
489 490 5.448632 CGGAGTATTATGTGGGCTGAAAAAC 60.449 44.000 0.00 0.00 0.00 2.43
490 491 5.417580 GGAGTATTATGTGGGCTGAAAAACA 59.582 40.000 0.00 0.00 0.00 2.83
491 492 6.096846 GGAGTATTATGTGGGCTGAAAAACAT 59.903 38.462 0.00 0.00 37.11 2.71
492 493 6.866480 AGTATTATGTGGGCTGAAAAACATG 58.134 36.000 0.00 0.00 35.07 3.21
493 494 5.743636 ATTATGTGGGCTGAAAAACATGT 57.256 34.783 0.00 0.00 35.07 3.21
494 495 2.886862 TGTGGGCTGAAAAACATGTG 57.113 45.000 0.00 0.00 0.00 3.21
495 496 2.106566 TGTGGGCTGAAAAACATGTGT 58.893 42.857 0.00 0.00 0.00 3.72
496 497 2.159128 TGTGGGCTGAAAAACATGTGTG 60.159 45.455 0.00 0.00 0.00 3.82
497 498 2.106566 TGGGCTGAAAAACATGTGTGT 58.893 42.857 0.00 0.00 41.28 3.72
498 499 2.100584 TGGGCTGAAAAACATGTGTGTC 59.899 45.455 0.00 0.00 37.67 3.67
499 500 2.362077 GGGCTGAAAAACATGTGTGTCT 59.638 45.455 7.73 0.00 37.67 3.41
500 501 3.181476 GGGCTGAAAAACATGTGTGTCTT 60.181 43.478 7.73 0.00 37.67 3.01
501 502 4.432712 GGCTGAAAAACATGTGTGTCTTT 58.567 39.130 7.73 0.00 37.67 2.52
502 503 4.268405 GGCTGAAAAACATGTGTGTCTTTG 59.732 41.667 7.73 0.00 37.67 2.77
503 504 4.268405 GCTGAAAAACATGTGTGTCTTTGG 59.732 41.667 7.73 0.00 37.67 3.28
504 505 5.398603 TGAAAAACATGTGTGTCTTTGGT 57.601 34.783 7.73 0.00 37.67 3.67
505 506 6.516739 TGAAAAACATGTGTGTCTTTGGTA 57.483 33.333 7.73 0.00 37.67 3.25
506 507 6.559810 TGAAAAACATGTGTGTCTTTGGTAG 58.440 36.000 7.73 0.00 37.67 3.18
507 508 5.514274 AAAACATGTGTGTCTTTGGTAGG 57.486 39.130 0.00 0.00 37.67 3.18
508 509 2.504367 ACATGTGTGTCTTTGGTAGGC 58.496 47.619 0.00 0.00 31.41 3.93
509 510 1.812571 CATGTGTGTCTTTGGTAGGCC 59.187 52.381 0.00 0.00 0.00 5.19
510 511 0.250124 TGTGTGTCTTTGGTAGGCCG 60.250 55.000 0.00 0.00 37.67 6.13
511 512 0.034337 GTGTGTCTTTGGTAGGCCGA 59.966 55.000 0.00 0.00 37.67 5.54
512 513 0.759959 TGTGTCTTTGGTAGGCCGAA 59.240 50.000 0.00 0.00 37.67 4.30
526 527 3.935993 CCGAAGGCTGAAGAGGAAA 57.064 52.632 0.00 0.00 46.14 3.13
527 528 1.731720 CCGAAGGCTGAAGAGGAAAG 58.268 55.000 0.00 0.00 46.14 2.62
528 529 1.677217 CCGAAGGCTGAAGAGGAAAGG 60.677 57.143 0.00 0.00 46.14 3.11
529 530 1.276421 CGAAGGCTGAAGAGGAAAGGA 59.724 52.381 0.00 0.00 0.00 3.36
530 531 2.289694 CGAAGGCTGAAGAGGAAAGGAA 60.290 50.000 0.00 0.00 0.00 3.36
531 532 3.756117 GAAGGCTGAAGAGGAAAGGAAA 58.244 45.455 0.00 0.00 0.00 3.13
532 533 3.884037 AGGCTGAAGAGGAAAGGAAAA 57.116 42.857 0.00 0.00 0.00 2.29
533 534 3.491342 AGGCTGAAGAGGAAAGGAAAAC 58.509 45.455 0.00 0.00 0.00 2.43
534 535 3.139211 AGGCTGAAGAGGAAAGGAAAACT 59.861 43.478 0.00 0.00 0.00 2.66
535 536 4.351111 AGGCTGAAGAGGAAAGGAAAACTA 59.649 41.667 0.00 0.00 0.00 2.24
536 537 5.014649 AGGCTGAAGAGGAAAGGAAAACTAT 59.985 40.000 0.00 0.00 0.00 2.12
537 538 5.124617 GGCTGAAGAGGAAAGGAAAACTATG 59.875 44.000 0.00 0.00 0.00 2.23
538 539 5.392487 GCTGAAGAGGAAAGGAAAACTATGC 60.392 44.000 0.00 0.00 0.00 3.14
539 540 5.880901 TGAAGAGGAAAGGAAAACTATGCT 58.119 37.500 0.00 0.00 0.00 3.79
540 541 6.306987 TGAAGAGGAAAGGAAAACTATGCTT 58.693 36.000 0.00 0.00 31.74 3.91
541 542 6.777580 TGAAGAGGAAAGGAAAACTATGCTTT 59.222 34.615 0.00 0.00 42.68 3.51
558 559 4.708177 TGCTTTCCACTAGGCTGAATATC 58.292 43.478 0.00 0.00 33.74 1.63
598 599 0.443869 GTGTTGCATCGGCTGTACAG 59.556 55.000 18.93 18.93 41.91 2.74
599 600 0.673333 TGTTGCATCGGCTGTACAGG 60.673 55.000 23.95 8.81 41.91 4.00
633 635 2.354003 CCATGAGGGTTTCATTGTTGGC 60.354 50.000 0.00 0.00 44.14 4.52
649 651 2.104530 GCGGAGGCGTCTAAGGTC 59.895 66.667 6.34 0.00 0.00 3.85
674 676 8.918116 TCTTCTATGCATCTTTCTACACATACT 58.082 33.333 0.19 0.00 0.00 2.12
675 677 8.877808 TTCTATGCATCTTTCTACACATACTG 57.122 34.615 0.19 0.00 0.00 2.74
676 678 8.237811 TCTATGCATCTTTCTACACATACTGA 57.762 34.615 0.19 0.00 0.00 3.41
677 679 8.695456 TCTATGCATCTTTCTACACATACTGAA 58.305 33.333 0.19 0.00 0.00 3.02
678 680 9.317936 CTATGCATCTTTCTACACATACTGAAA 57.682 33.333 0.19 0.00 0.00 2.69
679 681 8.743085 ATGCATCTTTCTACACATACTGAAAT 57.257 30.769 0.00 0.00 0.00 2.17
680 682 9.836864 ATGCATCTTTCTACACATACTGAAATA 57.163 29.630 0.00 0.00 0.00 1.40
681 683 9.836864 TGCATCTTTCTACACATACTGAAATAT 57.163 29.630 0.00 0.00 0.00 1.28
692 694 9.959721 ACACATACTGAAATATATTGTATCCCC 57.040 33.333 0.00 0.00 0.00 4.81
693 695 9.396022 CACATACTGAAATATATTGTATCCCCC 57.604 37.037 0.00 0.00 0.00 5.40
694 696 9.351572 ACATACTGAAATATATTGTATCCCCCT 57.648 33.333 0.00 0.00 0.00 4.79
746 771 6.435430 TTGTGTAAAGAATGCGCATTATCT 57.565 33.333 33.98 25.06 34.02 1.98
750 775 6.747280 GTGTAAAGAATGCGCATTATCTTTGT 59.253 34.615 37.15 25.42 31.52 2.83
774 799 8.181573 TGTATGTCAAAAGAAAAATATCGGCTC 58.818 33.333 0.00 0.00 0.00 4.70
776 801 7.915293 TGTCAAAAGAAAAATATCGGCTCTA 57.085 32.000 0.00 0.00 0.00 2.43
778 803 9.607988 TGTCAAAAGAAAAATATCGGCTCTATA 57.392 29.630 0.00 0.00 0.00 1.31
846 871 9.959749 GGATAGAGACGATATTAATTCCTCATC 57.040 37.037 0.00 0.00 0.00 2.92
868 893 4.039852 TCAACCTTTCCCAAAAATGGCTAC 59.960 41.667 0.00 0.00 0.00 3.58
869 894 3.856900 ACCTTTCCCAAAAATGGCTACT 58.143 40.909 0.00 0.00 0.00 2.57
870 895 3.832490 ACCTTTCCCAAAAATGGCTACTC 59.168 43.478 0.00 0.00 0.00 2.59
915 940 2.825836 GGCACCCGAGGCATGAAG 60.826 66.667 0.00 0.00 0.00 3.02
960 987 4.493547 CTTCTCCAGTCTCACATTCTCAC 58.506 47.826 0.00 0.00 0.00 3.51
961 988 3.500343 TCTCCAGTCTCACATTCTCACA 58.500 45.455 0.00 0.00 0.00 3.58
962 989 3.256879 TCTCCAGTCTCACATTCTCACAC 59.743 47.826 0.00 0.00 0.00 3.82
970 997 9.838975 CAGTCTCACATTCTCACACTATATATC 57.161 37.037 0.00 0.00 0.00 1.63
1039 1068 1.326548 CTATCGTAGCGTGCAAAACCC 59.673 52.381 0.00 0.00 0.00 4.11
1589 1641 1.447140 CCGTGACATGGGGTACGTG 60.447 63.158 5.72 0.00 41.98 4.49
1603 1655 3.545911 CGTGCCCACTTACGTCAC 58.454 61.111 0.00 0.00 35.70 3.67
1604 1656 1.006571 CGTGCCCACTTACGTCACT 60.007 57.895 0.00 0.00 35.70 3.41
1605 1657 1.007336 CGTGCCCACTTACGTCACTC 61.007 60.000 0.00 0.00 35.70 3.51
1606 1658 0.317479 GTGCCCACTTACGTCACTCT 59.683 55.000 0.00 0.00 0.00 3.24
1607 1659 0.601558 TGCCCACTTACGTCACTCTC 59.398 55.000 0.00 0.00 0.00 3.20
1608 1660 0.889306 GCCCACTTACGTCACTCTCT 59.111 55.000 0.00 0.00 0.00 3.10
1640 1692 4.228912 AGCTAAATCCATGCGTAATTGC 57.771 40.909 0.00 0.00 0.00 3.56
1644 1696 3.602390 AATCCATGCGTAATTGCGTAC 57.398 42.857 17.26 2.36 37.81 3.67
1649 1701 3.060540 CCATGCGTAATTGCGTACACTAG 60.061 47.826 17.26 2.35 37.81 2.57
1650 1702 3.490800 TGCGTAATTGCGTACACTAGA 57.509 42.857 17.26 0.00 37.81 2.43
1651 1703 3.173599 TGCGTAATTGCGTACACTAGAC 58.826 45.455 17.26 0.00 37.81 2.59
1652 1704 3.173599 GCGTAATTGCGTACACTAGACA 58.826 45.455 17.26 0.00 0.00 3.41
1670 1725 2.222027 ACATAGCCGCTATTGCTTTCC 58.778 47.619 10.34 0.00 40.23 3.13
1674 1729 1.202348 AGCCGCTATTGCTTTCCAAAC 59.798 47.619 0.00 0.00 34.87 2.93
1693 1748 5.221224 CCAAACCAATCCATGCATATACGTT 60.221 40.000 0.00 0.00 0.00 3.99
1694 1749 6.016693 CCAAACCAATCCATGCATATACGTTA 60.017 38.462 0.00 0.00 0.00 3.18
1698 1754 8.263940 ACCAATCCATGCATATACGTTATTAC 57.736 34.615 0.00 0.00 0.00 1.89
1734 1793 4.547406 TGTATACAAGAGGACGATCGTG 57.453 45.455 28.12 12.67 35.18 4.35
1750 1809 3.848272 TCGTGCCCTGATTTTTCATTC 57.152 42.857 0.00 0.00 0.00 2.67
1826 1891 1.884926 GCAGTGTAGAGCCGCATCC 60.885 63.158 0.00 0.00 0.00 3.51
1856 1929 4.274705 GCAGAAGATAGCCCTAGAAAAAGC 59.725 45.833 0.00 0.00 0.00 3.51
1872 1945 3.492102 AAAGCTCAGCAAAGGTCTACA 57.508 42.857 0.00 0.00 0.00 2.74
1884 2129 5.562623 GCAAAGGTCTACATTTTTACGAACG 59.437 40.000 0.00 0.00 0.00 3.95
1897 2142 5.804692 TTTACGAACGATATTTGGCATGT 57.195 34.783 0.14 0.00 0.00 3.21
1911 2156 3.884895 TGGCATGTAGTCAAACCATAGG 58.115 45.455 0.00 0.00 30.91 2.57
2379 2695 3.241530 TCAACCCGCAGCTGGACT 61.242 61.111 17.12 0.00 0.00 3.85
2543 2859 1.678635 CAATCAGGGCCGCAAAGGA 60.679 57.895 0.00 0.00 45.00 3.36
2571 2887 1.269723 GAAACCGGCCAGAAAAGGAAG 59.730 52.381 0.00 0.00 0.00 3.46
2670 2997 5.592104 AAAAGAACCGGATGTCTTGTTTT 57.408 34.783 9.46 6.10 0.00 2.43
2807 3871 5.885912 ACCAGAATCAAACCATATAGCGTTT 59.114 36.000 0.00 0.00 32.48 3.60
2808 3872 7.051623 ACCAGAATCAAACCATATAGCGTTTA 58.948 34.615 0.91 0.00 31.15 2.01
2899 3973 0.034896 TCGACAGGAGCCAAAAGGAC 59.965 55.000 0.00 0.00 0.00 3.85
2903 3977 2.893489 GACAGGAGCCAAAAGGACAAAT 59.107 45.455 0.00 0.00 0.00 2.32
2914 3991 3.733443 AAGGACAAATGAAAGCACACC 57.267 42.857 0.00 0.00 0.00 4.16
3123 4230 0.462759 GAGATCTTGAGGTTGCCCCG 60.463 60.000 0.00 0.00 38.74 5.73
3170 4289 4.943705 GGTTCTTCTTCAGCCACATGATAA 59.056 41.667 0.00 0.00 0.00 1.75
3174 4293 6.182627 TCTTCTTCAGCCACATGATAACATT 58.817 36.000 0.00 0.00 34.15 2.71
3188 4307 5.893500 TGATAACATTAGGGGTTGTTGGAA 58.106 37.500 0.00 0.00 0.00 3.53
3425 4545 4.767255 CCAGAGTCGGGCCACAGC 62.767 72.222 4.39 0.00 38.76 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.677601 CGTCGATAACTTCACTTCGCTA 58.322 45.455 0.00 0.00 0.00 4.26
1 2 2.516923 CGTCGATAACTTCACTTCGCT 58.483 47.619 0.00 0.00 0.00 4.93
2 3 1.007319 GCGTCGATAACTTCACTTCGC 60.007 52.381 0.00 0.00 34.93 4.70
3 4 1.249491 CGCGTCGATAACTTCACTTCG 59.751 52.381 0.00 0.00 0.00 3.79
4 5 2.512885 TCGCGTCGATAACTTCACTTC 58.487 47.619 5.77 0.00 0.00 3.01
5 6 2.516923 CTCGCGTCGATAACTTCACTT 58.483 47.619 5.77 0.00 34.61 3.16
6 7 1.794437 GCTCGCGTCGATAACTTCACT 60.794 52.381 5.77 0.00 34.61 3.41
7 8 0.566593 GCTCGCGTCGATAACTTCAC 59.433 55.000 5.77 0.00 34.61 3.18
8 9 0.860203 CGCTCGCGTCGATAACTTCA 60.860 55.000 15.96 0.00 34.61 3.02
9 10 0.588233 TCGCTCGCGTCGATAACTTC 60.588 55.000 18.67 0.00 40.74 3.01
10 11 0.179181 TTCGCTCGCGTCGATAACTT 60.179 50.000 21.85 0.00 40.74 2.66
11 12 0.029035 ATTCGCTCGCGTCGATAACT 59.971 50.000 21.85 8.85 40.74 2.24
12 13 0.156857 CATTCGCTCGCGTCGATAAC 59.843 55.000 21.85 0.00 40.74 1.89
13 14 0.028374 TCATTCGCTCGCGTCGATAA 59.972 50.000 21.85 11.95 40.74 1.75
14 15 0.384353 CTCATTCGCTCGCGTCGATA 60.384 55.000 21.85 14.86 40.74 2.92
15 16 1.655654 CTCATTCGCTCGCGTCGAT 60.656 57.895 21.85 12.26 40.74 3.59
16 17 2.277310 CTCATTCGCTCGCGTCGA 60.277 61.111 18.67 18.67 40.74 4.20
17 18 3.965701 GCTCATTCGCTCGCGTCG 61.966 66.667 5.77 11.68 40.74 5.12
18 19 3.965701 CGCTCATTCGCTCGCGTC 61.966 66.667 5.77 0.00 40.64 5.19
19 20 3.758088 ATCGCTCATTCGCTCGCGT 62.758 57.895 5.77 0.00 45.25 6.01
20 21 3.026879 ATCGCTCATTCGCTCGCG 61.027 61.111 0.00 0.00 46.28 5.87
21 22 2.543383 CATCGCTCATTCGCTCGC 59.457 61.111 0.00 0.00 0.00 5.03
22 23 2.305853 CCCATCGCTCATTCGCTCG 61.306 63.158 0.00 0.00 0.00 5.03
23 24 0.943359 CTCCCATCGCTCATTCGCTC 60.943 60.000 0.00 0.00 0.00 5.03
24 25 1.068753 CTCCCATCGCTCATTCGCT 59.931 57.895 0.00 0.00 0.00 4.93
25 26 2.602322 GCTCCCATCGCTCATTCGC 61.602 63.158 0.00 0.00 0.00 4.70
26 27 0.602106 ATGCTCCCATCGCTCATTCG 60.602 55.000 0.00 0.00 0.00 3.34
27 28 0.873054 CATGCTCCCATCGCTCATTC 59.127 55.000 0.00 0.00 0.00 2.67
28 29 1.170919 GCATGCTCCCATCGCTCATT 61.171 55.000 11.37 0.00 0.00 2.57
29 30 1.600076 GCATGCTCCCATCGCTCAT 60.600 57.895 11.37 0.00 0.00 2.90
30 31 2.203112 GCATGCTCCCATCGCTCA 60.203 61.111 11.37 0.00 0.00 4.26
31 32 1.099879 AAAGCATGCTCCCATCGCTC 61.100 55.000 22.93 0.00 35.92 5.03
32 33 0.682209 AAAAGCATGCTCCCATCGCT 60.682 50.000 22.93 0.00 37.39 4.93
33 34 0.248784 GAAAAGCATGCTCCCATCGC 60.249 55.000 22.93 2.87 0.00 4.58
34 35 0.028505 CGAAAAGCATGCTCCCATCG 59.971 55.000 22.93 22.09 0.00 3.84
35 36 3.932459 CGAAAAGCATGCTCCCATC 57.068 52.632 22.93 15.09 0.00 3.51
46 47 4.664851 CGGATTATCGTTTAAGCGAAAAGC 59.335 41.667 18.36 8.59 44.38 3.51
47 48 5.005971 TCCGGATTATCGTTTAAGCGAAAAG 59.994 40.000 18.36 7.13 44.38 2.27
48 49 4.869297 TCCGGATTATCGTTTAAGCGAAAA 59.131 37.500 18.36 7.21 44.38 2.29
49 50 4.431809 TCCGGATTATCGTTTAAGCGAAA 58.568 39.130 18.36 13.41 44.38 3.46
50 51 4.044336 TCCGGATTATCGTTTAAGCGAA 57.956 40.909 18.36 3.50 44.38 4.70
51 52 3.713858 TCCGGATTATCGTTTAAGCGA 57.286 42.857 16.85 16.85 45.32 4.93
52 53 3.361339 CGTTCCGGATTATCGTTTAAGCG 60.361 47.826 4.15 5.23 0.00 4.68
53 54 4.111489 CGTTCCGGATTATCGTTTAAGC 57.889 45.455 4.15 0.00 0.00 3.09
66 67 8.925159 ACTAATTTAGTACAACTCCGTTCCGGA 61.925 40.741 0.00 0.00 45.22 5.14
67 68 6.846710 ACTAATTTAGTACAACTCCGTTCCGG 60.847 42.308 7.31 0.00 42.33 5.14
68 69 6.034256 CACTAATTTAGTACAACTCCGTTCCG 59.966 42.308 8.71 0.00 37.23 4.30
69 70 7.062722 GTCACTAATTTAGTACAACTCCGTTCC 59.937 40.741 8.71 0.00 37.23 3.62
70 71 7.596248 TGTCACTAATTTAGTACAACTCCGTTC 59.404 37.037 8.71 0.00 37.23 3.95
71 72 7.383300 GTGTCACTAATTTAGTACAACTCCGTT 59.617 37.037 8.71 0.00 37.23 4.44
72 73 6.865205 GTGTCACTAATTTAGTACAACTCCGT 59.135 38.462 8.71 0.00 37.23 4.69
73 74 7.088905 AGTGTCACTAATTTAGTACAACTCCG 58.911 38.462 2.87 0.00 37.23 4.63
74 75 8.828688 AAGTGTCACTAATTTAGTACAACTCC 57.171 34.615 5.77 3.79 37.23 3.85
86 87 9.661563 TCGGTTTCATATTAAGTGTCACTAATT 57.338 29.630 5.77 0.00 0.00 1.40
87 88 9.314321 CTCGGTTTCATATTAAGTGTCACTAAT 57.686 33.333 5.77 8.92 0.00 1.73
88 89 7.762615 CCTCGGTTTCATATTAAGTGTCACTAA 59.237 37.037 5.77 1.97 0.00 2.24
89 90 7.093640 ACCTCGGTTTCATATTAAGTGTCACTA 60.094 37.037 5.77 0.00 0.00 2.74
90 91 6.106673 CCTCGGTTTCATATTAAGTGTCACT 58.893 40.000 0.00 0.00 0.00 3.41
91 92 5.873164 ACCTCGGTTTCATATTAAGTGTCAC 59.127 40.000 0.00 0.00 0.00 3.67
92 93 6.045072 ACCTCGGTTTCATATTAAGTGTCA 57.955 37.500 0.00 0.00 0.00 3.58
93 94 7.263496 ACTACCTCGGTTTCATATTAAGTGTC 58.737 38.462 0.00 0.00 0.00 3.67
94 95 7.179076 ACTACCTCGGTTTCATATTAAGTGT 57.821 36.000 0.00 0.00 0.00 3.55
95 96 8.192774 TGTACTACCTCGGTTTCATATTAAGTG 58.807 37.037 0.00 0.00 0.00 3.16
96 97 8.297470 TGTACTACCTCGGTTTCATATTAAGT 57.703 34.615 0.00 0.00 0.00 2.24
99 100 8.517878 GCTATGTACTACCTCGGTTTCATATTA 58.482 37.037 0.00 0.00 0.00 0.98
100 101 7.014905 TGCTATGTACTACCTCGGTTTCATATT 59.985 37.037 0.00 0.00 0.00 1.28
101 102 6.492429 TGCTATGTACTACCTCGGTTTCATAT 59.508 38.462 0.00 0.00 0.00 1.78
102 103 5.829391 TGCTATGTACTACCTCGGTTTCATA 59.171 40.000 0.00 0.00 0.00 2.15
103 104 4.647853 TGCTATGTACTACCTCGGTTTCAT 59.352 41.667 0.00 0.00 0.00 2.57
104 105 4.018490 TGCTATGTACTACCTCGGTTTCA 58.982 43.478 0.00 0.00 0.00 2.69
105 106 4.357996 GTGCTATGTACTACCTCGGTTTC 58.642 47.826 0.00 0.00 0.00 2.78
106 107 3.131755 GGTGCTATGTACTACCTCGGTTT 59.868 47.826 0.00 0.00 0.00 3.27
107 108 2.692041 GGTGCTATGTACTACCTCGGTT 59.308 50.000 0.00 0.00 0.00 4.44
108 109 2.305009 GGTGCTATGTACTACCTCGGT 58.695 52.381 0.00 0.00 0.00 4.69
109 110 1.612463 GGGTGCTATGTACTACCTCGG 59.388 57.143 0.00 0.00 33.71 4.63
110 111 1.612463 GGGGTGCTATGTACTACCTCG 59.388 57.143 0.00 0.00 33.71 4.63
111 112 1.969208 GGGGGTGCTATGTACTACCTC 59.031 57.143 0.00 0.00 33.71 3.85
112 113 2.098618 GGGGGTGCTATGTACTACCT 57.901 55.000 0.00 0.00 33.71 3.08
128 129 2.398554 CGCAACTCATTGTCGGGGG 61.399 63.158 0.00 0.00 38.17 5.40
129 130 2.398554 CCGCAACTCATTGTCGGGG 61.399 63.158 12.21 0.00 44.66 5.73
130 131 3.039202 GCCGCAACTCATTGTCGGG 62.039 63.158 18.01 7.07 46.58 5.14
132 133 1.133253 CTGCCGCAACTCATTGTCG 59.867 57.895 0.00 0.00 38.17 4.35
133 134 0.110056 CACTGCCGCAACTCATTGTC 60.110 55.000 0.00 0.00 38.17 3.18
134 135 1.951510 CACTGCCGCAACTCATTGT 59.048 52.632 0.00 0.00 38.17 2.71
135 136 1.443194 GCACTGCCGCAACTCATTG 60.443 57.895 0.00 0.00 38.99 2.82
136 137 2.629656 GGCACTGCCGCAACTCATT 61.630 57.895 3.73 0.00 39.62 2.57
137 138 3.058160 GGCACTGCCGCAACTCAT 61.058 61.111 3.73 0.00 39.62 2.90
147 148 2.064014 GCAGAATTTTCAAGGCACTGC 58.936 47.619 0.00 0.00 40.86 4.40
148 149 3.054878 GTGCAGAATTTTCAAGGCACTG 58.945 45.455 18.92 0.00 42.90 3.66
149 150 2.961062 AGTGCAGAATTTTCAAGGCACT 59.039 40.909 21.26 21.26 46.98 4.40
150 151 3.375782 AGTGCAGAATTTTCAAGGCAC 57.624 42.857 18.72 18.72 44.69 5.01
151 152 3.243839 GGAAGTGCAGAATTTTCAAGGCA 60.244 43.478 0.00 0.00 0.00 4.75
152 153 3.320626 GGAAGTGCAGAATTTTCAAGGC 58.679 45.455 0.00 0.00 0.00 4.35
153 154 3.575687 AGGGAAGTGCAGAATTTTCAAGG 59.424 43.478 0.00 0.00 0.00 3.61
154 155 4.038402 ACAGGGAAGTGCAGAATTTTCAAG 59.962 41.667 0.00 0.00 0.00 3.02
155 156 3.960102 ACAGGGAAGTGCAGAATTTTCAA 59.040 39.130 0.00 0.00 0.00 2.69
156 157 3.565307 ACAGGGAAGTGCAGAATTTTCA 58.435 40.909 0.00 0.00 0.00 2.69
157 158 3.365364 CGACAGGGAAGTGCAGAATTTTC 60.365 47.826 0.00 0.00 0.00 2.29
158 159 2.554032 CGACAGGGAAGTGCAGAATTTT 59.446 45.455 0.00 0.00 0.00 1.82
159 160 2.154462 CGACAGGGAAGTGCAGAATTT 58.846 47.619 0.00 0.00 0.00 1.82
160 161 1.347707 TCGACAGGGAAGTGCAGAATT 59.652 47.619 0.00 0.00 0.00 2.17
161 162 0.976641 TCGACAGGGAAGTGCAGAAT 59.023 50.000 0.00 0.00 0.00 2.40
162 163 0.756294 TTCGACAGGGAAGTGCAGAA 59.244 50.000 0.00 0.00 0.00 3.02
163 164 0.976641 ATTCGACAGGGAAGTGCAGA 59.023 50.000 0.00 0.00 0.00 4.26
164 165 1.081892 CATTCGACAGGGAAGTGCAG 58.918 55.000 0.00 0.00 0.00 4.41
165 166 0.955428 GCATTCGACAGGGAAGTGCA 60.955 55.000 0.00 0.00 34.02 4.57
166 167 0.674895 AGCATTCGACAGGGAAGTGC 60.675 55.000 0.00 0.00 34.03 4.40
167 168 1.466167 CAAGCATTCGACAGGGAAGTG 59.534 52.381 0.00 0.00 0.00 3.16
168 169 1.072331 ACAAGCATTCGACAGGGAAGT 59.928 47.619 0.00 0.00 0.00 3.01
169 170 1.813513 ACAAGCATTCGACAGGGAAG 58.186 50.000 0.00 0.00 0.00 3.46
170 171 2.270352 AACAAGCATTCGACAGGGAA 57.730 45.000 0.00 0.00 0.00 3.97
171 172 3.627395 ATAACAAGCATTCGACAGGGA 57.373 42.857 0.00 0.00 0.00 4.20
172 173 3.065371 GGAATAACAAGCATTCGACAGGG 59.935 47.826 0.00 0.00 33.94 4.45
173 174 3.065371 GGGAATAACAAGCATTCGACAGG 59.935 47.826 0.00 0.00 33.94 4.00
174 175 3.941483 AGGGAATAACAAGCATTCGACAG 59.059 43.478 0.00 0.00 33.94 3.51
175 176 3.938963 GAGGGAATAACAAGCATTCGACA 59.061 43.478 0.00 0.00 33.94 4.35
176 177 3.312697 GGAGGGAATAACAAGCATTCGAC 59.687 47.826 0.00 0.00 33.94 4.20
177 178 3.541632 GGAGGGAATAACAAGCATTCGA 58.458 45.455 0.00 0.00 33.94 3.71
178 179 2.287915 CGGAGGGAATAACAAGCATTCG 59.712 50.000 0.00 0.00 33.94 3.34
179 180 3.279434 ACGGAGGGAATAACAAGCATTC 58.721 45.455 0.00 0.00 0.00 2.67
180 181 3.366052 ACGGAGGGAATAACAAGCATT 57.634 42.857 0.00 0.00 0.00 3.56
181 182 3.279434 GAACGGAGGGAATAACAAGCAT 58.721 45.455 0.00 0.00 0.00 3.79
182 183 2.617021 GGAACGGAGGGAATAACAAGCA 60.617 50.000 0.00 0.00 0.00 3.91
183 184 2.014857 GGAACGGAGGGAATAACAAGC 58.985 52.381 0.00 0.00 0.00 4.01
184 185 3.629142 AGGAACGGAGGGAATAACAAG 57.371 47.619 0.00 0.00 0.00 3.16
185 186 5.502089 TTTAGGAACGGAGGGAATAACAA 57.498 39.130 0.00 0.00 0.00 2.83
186 187 5.703730 ATTTAGGAACGGAGGGAATAACA 57.296 39.130 0.00 0.00 0.00 2.41
187 188 6.824553 AGTATTTAGGAACGGAGGGAATAAC 58.175 40.000 0.00 0.00 0.00 1.89
188 189 6.042437 GGAGTATTTAGGAACGGAGGGAATAA 59.958 42.308 0.00 0.00 0.00 1.40
189 190 5.541484 GGAGTATTTAGGAACGGAGGGAATA 59.459 44.000 0.00 0.00 0.00 1.75
190 191 4.347292 GGAGTATTTAGGAACGGAGGGAAT 59.653 45.833 0.00 0.00 0.00 3.01
191 192 3.708121 GGAGTATTTAGGAACGGAGGGAA 59.292 47.826 0.00 0.00 0.00 3.97
192 193 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
193 194 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
194 195 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
195 196 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
196 197 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
197 198 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
198 199 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
199 200 3.069300 GGACGGAGGGAGTATTTAGGAAC 59.931 52.174 0.00 0.00 0.00 3.62
200 201 3.303049 GGACGGAGGGAGTATTTAGGAA 58.697 50.000 0.00 0.00 0.00 3.36
201 202 2.750807 CGGACGGAGGGAGTATTTAGGA 60.751 54.545 0.00 0.00 0.00 2.94
202 203 1.612463 CGGACGGAGGGAGTATTTAGG 59.388 57.143 0.00 0.00 0.00 2.69
203 204 1.612463 CCGGACGGAGGGAGTATTTAG 59.388 57.143 4.40 0.00 37.50 1.85
204 205 1.215173 TCCGGACGGAGGGAGTATTTA 59.785 52.381 9.76 0.00 39.76 1.40
205 206 0.032813 TCCGGACGGAGGGAGTATTT 60.033 55.000 9.76 0.00 39.76 1.40
206 207 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
207 208 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
208 209 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
209 210 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
210 211 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
211 212 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
212 213 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
213 214 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
214 215 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
215 216 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
216 217 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
217 218 4.735662 TTTTGACAAGTATTTCCGGACG 57.264 40.909 1.83 0.00 0.00 4.79
269 270 8.925338 AGGAATGGACGTATCTAGAAGTATTTT 58.075 33.333 0.00 0.00 0.00 1.82
270 271 8.480133 AGGAATGGACGTATCTAGAAGTATTT 57.520 34.615 0.00 0.00 0.00 1.40
271 272 7.177041 GGAGGAATGGACGTATCTAGAAGTATT 59.823 40.741 0.00 0.00 0.00 1.89
272 273 6.660094 GGAGGAATGGACGTATCTAGAAGTAT 59.340 42.308 0.00 0.00 0.00 2.12
273 274 6.002704 GGAGGAATGGACGTATCTAGAAGTA 58.997 44.000 0.00 0.00 0.00 2.24
274 275 4.828387 GGAGGAATGGACGTATCTAGAAGT 59.172 45.833 0.00 0.00 0.00 3.01
275 276 4.083217 CGGAGGAATGGACGTATCTAGAAG 60.083 50.000 0.00 0.00 0.00 2.85
276 277 3.819337 CGGAGGAATGGACGTATCTAGAA 59.181 47.826 0.00 0.00 0.00 2.10
277 278 3.072038 TCGGAGGAATGGACGTATCTAGA 59.928 47.826 0.00 0.00 0.00 2.43
278 279 3.188873 GTCGGAGGAATGGACGTATCTAG 59.811 52.174 0.00 0.00 0.00 2.43
279 280 3.144506 GTCGGAGGAATGGACGTATCTA 58.855 50.000 0.00 0.00 0.00 1.98
280 281 1.955080 GTCGGAGGAATGGACGTATCT 59.045 52.381 0.00 0.00 0.00 1.98
281 282 1.679680 TGTCGGAGGAATGGACGTATC 59.320 52.381 0.00 0.00 33.45 2.24
282 283 1.771565 TGTCGGAGGAATGGACGTAT 58.228 50.000 0.00 0.00 33.45 3.06
283 284 1.475280 CTTGTCGGAGGAATGGACGTA 59.525 52.381 0.00 0.00 33.45 3.57
284 285 0.246635 CTTGTCGGAGGAATGGACGT 59.753 55.000 0.00 0.00 33.45 4.34
285 286 0.246635 ACTTGTCGGAGGAATGGACG 59.753 55.000 0.00 0.00 33.45 4.79
286 287 3.821421 ATACTTGTCGGAGGAATGGAC 57.179 47.619 0.00 0.00 0.00 4.02
287 288 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
288 289 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
289 290 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
290 291 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
291 292 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
292 293 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
293 294 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
294 295 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
295 296 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
296 297 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
297 298 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
298 299 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
299 300 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
300 301 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
301 302 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
302 303 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
303 304 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
304 305 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
305 306 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
306 307 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
307 308 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
308 309 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
309 310 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
310 311 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
311 312 3.029570 ACAAATAGTACTCCCTCCGTCC 58.970 50.000 0.00 0.00 0.00 4.79
312 313 3.952967 AGACAAATAGTACTCCCTCCGTC 59.047 47.826 0.00 0.37 0.00 4.79
313 314 3.978610 AGACAAATAGTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
314 315 5.127356 AGAAAGACAAATAGTACTCCCTCCG 59.873 44.000 0.00 0.00 0.00 4.63
315 316 6.547930 AGAAAGACAAATAGTACTCCCTCC 57.452 41.667 0.00 0.00 0.00 4.30
316 317 8.522542 TCTAGAAAGACAAATAGTACTCCCTC 57.477 38.462 0.00 0.00 0.00 4.30
317 318 8.337739 TCTCTAGAAAGACAAATAGTACTCCCT 58.662 37.037 0.00 0.00 0.00 4.20
318 319 8.522542 TCTCTAGAAAGACAAATAGTACTCCC 57.477 38.462 0.00 0.00 0.00 4.30
330 331 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
331 332 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
332 333 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
335 336 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
339 340 9.725019 TGTATGTAGTCATTTGTTGAAATCTCT 57.275 29.630 0.00 0.00 35.70 3.10
340 341 9.979270 CTGTATGTAGTCATTTGTTGAAATCTC 57.021 33.333 0.00 0.00 35.70 2.75
341 342 9.725019 TCTGTATGTAGTCATTTGTTGAAATCT 57.275 29.630 0.00 0.00 35.70 2.40
344 345 9.114952 TGTTCTGTATGTAGTCATTTGTTGAAA 57.885 29.630 0.00 0.00 35.70 2.69
345 346 8.669946 TGTTCTGTATGTAGTCATTTGTTGAA 57.330 30.769 0.00 0.00 35.70 2.69
346 347 8.669946 TTGTTCTGTATGTAGTCATTTGTTGA 57.330 30.769 0.00 0.00 35.70 3.18
347 348 9.729023 TTTTGTTCTGTATGTAGTCATTTGTTG 57.271 29.630 0.00 0.00 35.70 3.33
398 399 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
442 443 7.040548 TCCGTCCGTTCCTAAATATTTGTTTTT 60.041 33.333 11.05 0.00 0.00 1.94
443 444 6.430616 TCCGTCCGTTCCTAAATATTTGTTTT 59.569 34.615 11.05 0.00 0.00 2.43
444 445 5.939296 TCCGTCCGTTCCTAAATATTTGTTT 59.061 36.000 11.05 0.00 0.00 2.83
445 446 5.490159 TCCGTCCGTTCCTAAATATTTGTT 58.510 37.500 11.05 0.00 0.00 2.83
446 447 5.088680 TCCGTCCGTTCCTAAATATTTGT 57.911 39.130 11.05 0.00 0.00 2.83
447 448 5.114081 ACTCCGTCCGTTCCTAAATATTTG 58.886 41.667 11.05 1.40 0.00 2.32
448 449 5.349061 ACTCCGTCCGTTCCTAAATATTT 57.651 39.130 5.89 5.89 0.00 1.40
449 450 6.661304 ATACTCCGTCCGTTCCTAAATATT 57.339 37.500 0.00 0.00 0.00 1.28
450 451 6.661304 AATACTCCGTCCGTTCCTAAATAT 57.339 37.500 0.00 0.00 0.00 1.28
451 452 7.231317 ACATAATACTCCGTCCGTTCCTAAATA 59.769 37.037 0.00 0.00 0.00 1.40
452 453 6.041296 ACATAATACTCCGTCCGTTCCTAAAT 59.959 38.462 0.00 0.00 0.00 1.40
453 454 5.360714 ACATAATACTCCGTCCGTTCCTAAA 59.639 40.000 0.00 0.00 0.00 1.85
454 455 4.889409 ACATAATACTCCGTCCGTTCCTAA 59.111 41.667 0.00 0.00 0.00 2.69
455 456 4.276678 CACATAATACTCCGTCCGTTCCTA 59.723 45.833 0.00 0.00 0.00 2.94
456 457 3.067742 CACATAATACTCCGTCCGTTCCT 59.932 47.826 0.00 0.00 0.00 3.36
457 458 3.378339 CACATAATACTCCGTCCGTTCC 58.622 50.000 0.00 0.00 0.00 3.62
458 459 3.378339 CCACATAATACTCCGTCCGTTC 58.622 50.000 0.00 0.00 0.00 3.95
459 460 2.101917 CCCACATAATACTCCGTCCGTT 59.898 50.000 0.00 0.00 0.00 4.44
460 461 1.684983 CCCACATAATACTCCGTCCGT 59.315 52.381 0.00 0.00 0.00 4.69
461 462 1.604693 GCCCACATAATACTCCGTCCG 60.605 57.143 0.00 0.00 0.00 4.79
462 463 1.692519 AGCCCACATAATACTCCGTCC 59.307 52.381 0.00 0.00 0.00 4.79
463 464 2.364324 TCAGCCCACATAATACTCCGTC 59.636 50.000 0.00 0.00 0.00 4.79
464 465 2.394632 TCAGCCCACATAATACTCCGT 58.605 47.619 0.00 0.00 0.00 4.69
465 466 3.469008 TTCAGCCCACATAATACTCCG 57.531 47.619 0.00 0.00 0.00 4.63
466 467 5.417580 TGTTTTTCAGCCCACATAATACTCC 59.582 40.000 0.00 0.00 0.00 3.85
467 468 6.509418 TGTTTTTCAGCCCACATAATACTC 57.491 37.500 0.00 0.00 0.00 2.59
468 469 6.437162 ACATGTTTTTCAGCCCACATAATACT 59.563 34.615 0.00 0.00 0.00 2.12
469 470 6.531240 CACATGTTTTTCAGCCCACATAATAC 59.469 38.462 0.00 0.00 0.00 1.89
470 471 6.210385 ACACATGTTTTTCAGCCCACATAATA 59.790 34.615 0.00 0.00 0.00 0.98
471 472 5.011943 ACACATGTTTTTCAGCCCACATAAT 59.988 36.000 0.00 0.00 0.00 1.28
472 473 4.343526 ACACATGTTTTTCAGCCCACATAA 59.656 37.500 0.00 0.00 0.00 1.90
473 474 3.894427 ACACATGTTTTTCAGCCCACATA 59.106 39.130 0.00 0.00 0.00 2.29
474 475 2.699846 ACACATGTTTTTCAGCCCACAT 59.300 40.909 0.00 0.00 0.00 3.21
475 476 2.106566 ACACATGTTTTTCAGCCCACA 58.893 42.857 0.00 0.00 0.00 4.17
476 477 2.159114 ACACACATGTTTTTCAGCCCAC 60.159 45.455 0.00 0.00 34.46 4.61
477 478 2.100584 GACACACATGTTTTTCAGCCCA 59.899 45.455 0.00 0.00 39.95 5.36
478 479 2.362077 AGACACACATGTTTTTCAGCCC 59.638 45.455 0.00 0.00 39.95 5.19
479 480 3.715628 AGACACACATGTTTTTCAGCC 57.284 42.857 0.00 0.00 39.95 4.85
480 481 4.268405 CCAAAGACACACATGTTTTTCAGC 59.732 41.667 0.00 0.00 40.24 4.26
481 482 5.410067 ACCAAAGACACACATGTTTTTCAG 58.590 37.500 0.00 0.00 40.24 3.02
482 483 5.398603 ACCAAAGACACACATGTTTTTCA 57.601 34.783 0.00 0.00 40.24 2.69
483 484 5.977129 CCTACCAAAGACACACATGTTTTTC 59.023 40.000 0.00 0.00 40.24 2.29
484 485 5.681179 GCCTACCAAAGACACACATGTTTTT 60.681 40.000 0.00 0.00 42.30 1.94
485 486 4.202111 GCCTACCAAAGACACACATGTTTT 60.202 41.667 0.00 0.00 39.95 2.43
486 487 3.317993 GCCTACCAAAGACACACATGTTT 59.682 43.478 0.00 0.00 39.95 2.83
487 488 2.884639 GCCTACCAAAGACACACATGTT 59.115 45.455 0.00 0.00 39.95 2.71
488 489 2.504367 GCCTACCAAAGACACACATGT 58.496 47.619 0.00 0.00 43.71 3.21
489 490 1.812571 GGCCTACCAAAGACACACATG 59.187 52.381 0.00 0.00 35.26 3.21
490 491 1.610624 CGGCCTACCAAAGACACACAT 60.611 52.381 0.00 0.00 34.57 3.21
491 492 0.250124 CGGCCTACCAAAGACACACA 60.250 55.000 0.00 0.00 34.57 3.72
492 493 0.034337 TCGGCCTACCAAAGACACAC 59.966 55.000 0.00 0.00 34.57 3.82
493 494 0.759959 TTCGGCCTACCAAAGACACA 59.240 50.000 0.00 0.00 34.57 3.72
494 495 1.439679 CTTCGGCCTACCAAAGACAC 58.560 55.000 0.00 0.00 34.57 3.67
495 496 0.323629 CCTTCGGCCTACCAAAGACA 59.676 55.000 0.00 0.00 34.57 3.41
496 497 1.025113 GCCTTCGGCCTACCAAAGAC 61.025 60.000 0.00 0.00 44.06 3.01
497 498 1.298667 GCCTTCGGCCTACCAAAGA 59.701 57.895 0.00 0.00 44.06 2.52
498 499 3.905249 GCCTTCGGCCTACCAAAG 58.095 61.111 0.00 0.00 44.06 2.77
508 509 1.677217 CCTTTCCTCTTCAGCCTTCGG 60.677 57.143 0.00 0.00 0.00 4.30
509 510 1.276421 TCCTTTCCTCTTCAGCCTTCG 59.724 52.381 0.00 0.00 0.00 3.79
510 511 3.425162 TTCCTTTCCTCTTCAGCCTTC 57.575 47.619 0.00 0.00 0.00 3.46
511 512 3.884037 TTTCCTTTCCTCTTCAGCCTT 57.116 42.857 0.00 0.00 0.00 4.35
512 513 3.139211 AGTTTTCCTTTCCTCTTCAGCCT 59.861 43.478 0.00 0.00 0.00 4.58
513 514 3.491342 AGTTTTCCTTTCCTCTTCAGCC 58.509 45.455 0.00 0.00 0.00 4.85
514 515 5.392487 GCATAGTTTTCCTTTCCTCTTCAGC 60.392 44.000 0.00 0.00 0.00 4.26
515 516 5.942826 AGCATAGTTTTCCTTTCCTCTTCAG 59.057 40.000 0.00 0.00 0.00 3.02
516 517 5.880901 AGCATAGTTTTCCTTTCCTCTTCA 58.119 37.500 0.00 0.00 0.00 3.02
517 518 6.825944 AAGCATAGTTTTCCTTTCCTCTTC 57.174 37.500 0.00 0.00 0.00 2.87
518 519 7.220741 GAAAGCATAGTTTTCCTTTCCTCTT 57.779 36.000 0.00 0.00 38.00 2.85
519 520 6.825944 GAAAGCATAGTTTTCCTTTCCTCT 57.174 37.500 0.00 0.00 38.00 3.69
528 529 4.944317 AGCCTAGTGGAAAGCATAGTTTTC 59.056 41.667 0.00 0.00 34.55 2.29
529 530 4.702131 CAGCCTAGTGGAAAGCATAGTTTT 59.298 41.667 0.00 0.00 34.57 2.43
530 531 4.019321 TCAGCCTAGTGGAAAGCATAGTTT 60.019 41.667 0.00 0.00 34.57 2.66
531 532 3.519510 TCAGCCTAGTGGAAAGCATAGTT 59.480 43.478 0.00 0.00 34.57 2.24
532 533 3.107601 TCAGCCTAGTGGAAAGCATAGT 58.892 45.455 0.00 0.00 34.57 2.12
533 534 3.827008 TCAGCCTAGTGGAAAGCATAG 57.173 47.619 0.00 0.00 34.57 2.23
534 535 4.778213 ATTCAGCCTAGTGGAAAGCATA 57.222 40.909 0.00 0.00 34.57 3.14
535 536 3.659183 ATTCAGCCTAGTGGAAAGCAT 57.341 42.857 0.00 0.00 34.57 3.79
536 537 4.410228 AGATATTCAGCCTAGTGGAAAGCA 59.590 41.667 0.00 0.00 34.57 3.91
537 538 4.754114 CAGATATTCAGCCTAGTGGAAAGC 59.246 45.833 0.00 0.00 34.57 3.51
538 539 5.303971 CCAGATATTCAGCCTAGTGGAAAG 58.696 45.833 0.00 0.00 34.57 2.62
539 540 4.103153 CCCAGATATTCAGCCTAGTGGAAA 59.897 45.833 0.00 0.00 34.57 3.13
540 541 3.648067 CCCAGATATTCAGCCTAGTGGAA 59.352 47.826 0.00 0.00 34.57 3.53
541 542 3.242867 CCCAGATATTCAGCCTAGTGGA 58.757 50.000 0.00 0.00 34.57 4.02
542 543 2.289945 GCCCAGATATTCAGCCTAGTGG 60.290 54.545 0.00 0.00 0.00 4.00
543 544 2.636893 AGCCCAGATATTCAGCCTAGTG 59.363 50.000 0.00 0.00 0.00 2.74
544 545 2.636893 CAGCCCAGATATTCAGCCTAGT 59.363 50.000 0.00 0.00 0.00 2.57
545 546 2.614987 GCAGCCCAGATATTCAGCCTAG 60.615 54.545 0.00 0.00 0.00 3.02
546 547 1.349026 GCAGCCCAGATATTCAGCCTA 59.651 52.381 0.00 0.00 0.00 3.93
547 548 0.110104 GCAGCCCAGATATTCAGCCT 59.890 55.000 0.00 0.00 0.00 4.58
576 577 0.673333 TACAGCCGATGCAACACCTG 60.673 55.000 8.65 8.65 41.13 4.00
579 580 0.443869 CTGTACAGCCGATGCAACAC 59.556 55.000 10.54 0.00 41.13 3.32
615 617 0.958091 CGCCAACAATGAAACCCTCA 59.042 50.000 0.00 0.00 38.81 3.86
617 619 0.178975 TCCGCCAACAATGAAACCCT 60.179 50.000 0.00 0.00 0.00 4.34
633 635 0.100861 GAAGACCTTAGACGCCTCCG 59.899 60.000 0.00 0.00 41.14 4.63
649 651 8.976471 CAGTATGTGTAGAAAGATGCATAGAAG 58.024 37.037 0.00 0.00 0.00 2.85
717 719 6.344572 TGCGCATTCTTTACACAATACTAG 57.655 37.500 5.66 0.00 0.00 2.57
719 721 5.818136 ATGCGCATTCTTTACACAATACT 57.182 34.783 19.28 0.00 0.00 2.12
720 722 8.070171 AGATAATGCGCATTCTTTACACAATAC 58.930 33.333 36.99 15.38 32.50 1.89
722 724 7.031226 AGATAATGCGCATTCTTTACACAAT 57.969 32.000 36.99 21.83 32.50 2.71
725 727 6.747280 ACAAAGATAATGCGCATTCTTTACAC 59.253 34.615 33.43 21.16 29.36 2.90
726 728 6.851609 ACAAAGATAATGCGCATTCTTTACA 58.148 32.000 33.43 21.55 29.36 2.41
746 771 9.134734 GCCGATATTTTTCTTTTGACATACAAA 57.865 29.630 0.00 0.00 45.22 2.83
750 775 8.506168 AGAGCCGATATTTTTCTTTTGACATA 57.494 30.769 0.00 0.00 0.00 2.29
840 865 4.953940 TTTTTGGGAAAGGTTGATGAGG 57.046 40.909 0.00 0.00 0.00 3.86
846 871 3.490439 AGCCATTTTTGGGAAAGGTTG 57.510 42.857 0.00 0.00 0.00 3.77
878 903 3.698463 GTTCACGCACGTGTCCCG 61.698 66.667 21.28 14.65 45.55 5.14
911 936 2.815211 GCTGTGATCGGCGCTTCA 60.815 61.111 7.64 5.00 36.18 3.02
960 987 2.798680 GCCTCGCGTGGATATATAGTG 58.201 52.381 30.07 0.47 0.00 2.74
981 1008 3.050275 GGTGCTTCGCAGGTGGAC 61.050 66.667 0.00 0.00 40.08 4.02
988 1015 2.844451 GCTTGGTTGGTGCTTCGCA 61.844 57.895 0.00 0.00 35.60 5.10
991 1018 0.032540 CTTGGCTTGGTTGGTGCTTC 59.967 55.000 0.00 0.00 0.00 3.86
1021 1050 1.303091 GGGGTTTTGCACGCTACGAT 61.303 55.000 0.00 0.00 38.43 3.73
1082 1115 2.109799 ATTCGCGCTGGATCTGGG 59.890 61.111 5.56 0.00 0.00 4.45
1130 1167 1.519455 GATGTCGTCCTTCCGGCTG 60.519 63.158 0.00 0.00 32.64 4.85
1191 1228 2.105128 GATCTCCTCCACGCCGTG 59.895 66.667 10.95 10.95 0.00 4.94
1491 1543 2.533318 CGGAGCAGTTGAAGGACAC 58.467 57.895 0.00 0.00 0.00 3.67
1603 1655 7.502226 TGGATTTAGCTAGAAAGAGAGAGAGAG 59.498 40.741 0.00 0.00 0.00 3.20
1604 1656 7.350382 TGGATTTAGCTAGAAAGAGAGAGAGA 58.650 38.462 0.00 0.00 0.00 3.10
1605 1657 7.581213 TGGATTTAGCTAGAAAGAGAGAGAG 57.419 40.000 0.00 0.00 0.00 3.20
1606 1658 7.471260 GCATGGATTTAGCTAGAAAGAGAGAGA 60.471 40.741 0.00 0.00 0.00 3.10
1607 1659 6.646240 GCATGGATTTAGCTAGAAAGAGAGAG 59.354 42.308 0.00 0.00 0.00 3.20
1608 1660 6.520272 GCATGGATTTAGCTAGAAAGAGAGA 58.480 40.000 0.00 0.00 0.00 3.10
1640 1692 1.602851 AGCGGCTATGTCTAGTGTACG 59.397 52.381 0.00 0.00 0.00 3.67
1644 1696 2.989840 GCAATAGCGGCTATGTCTAGTG 59.010 50.000 22.31 15.98 33.20 2.74
1670 1725 5.437289 ACGTATATGCATGGATTGGTTTG 57.563 39.130 10.16 0.00 0.00 2.93
1674 1729 8.492673 AGTAATAACGTATATGCATGGATTGG 57.507 34.615 10.16 0.00 0.00 3.16
1750 1809 3.436700 AAGACAAGTTTGGCCTTTTCG 57.563 42.857 3.32 0.00 36.67 3.46
1826 1891 1.067915 GGGCTATCTTCTGCTAGCTCG 60.068 57.143 17.23 7.27 40.17 5.03
1856 1929 6.147164 TCGTAAAAATGTAGACCTTTGCTGAG 59.853 38.462 0.00 0.00 0.00 3.35
1872 1945 7.254852 ACATGCCAAATATCGTTCGTAAAAAT 58.745 30.769 0.00 0.00 0.00 1.82
1884 2129 6.449635 TGGTTTGACTACATGCCAAATATC 57.550 37.500 0.00 0.00 31.09 1.63
2543 2859 0.546598 CTGGCCGGTTTCCCTTCTAT 59.453 55.000 2.29 0.00 0.00 1.98
2571 2887 8.677148 TGGTATCTTTATTAGATTTCACCTGC 57.323 34.615 0.00 0.00 40.84 4.85
2604 2921 3.349927 CATCCAAATTGTCTCTGCTCCA 58.650 45.455 0.00 0.00 0.00 3.86
2791 3855 9.950858 CAAACAAAATAAACGCTATATGGTTTG 57.049 29.630 10.10 0.00 37.01 2.93
2823 3890 9.436957 GAATGATGAACCTTAGTTTTCAGTAGA 57.563 33.333 1.10 0.00 35.94 2.59
2827 3895 6.371548 TCCGAATGATGAACCTTAGTTTTCAG 59.628 38.462 0.00 0.00 35.94 3.02
2895 3969 1.608590 CGGTGTGCTTTCATTTGTCCT 59.391 47.619 0.00 0.00 0.00 3.85
2899 3973 1.068333 CCTCCGGTGTGCTTTCATTTG 60.068 52.381 0.00 0.00 0.00 2.32
2903 3977 2.281484 GCCTCCGGTGTGCTTTCA 60.281 61.111 0.00 0.00 0.00 2.69
2914 3991 1.883084 GGCGTCTATGTTGCCTCCG 60.883 63.158 0.00 0.00 45.40 4.63
2942 4031 2.897436 CGAGTCATGTGGTGTGATCAT 58.103 47.619 0.00 0.00 0.00 2.45
3002 4106 0.998928 ACAATATGCTGGTCACCCCA 59.001 50.000 0.00 0.00 42.51 4.96
3003 4107 1.064758 TCACAATATGCTGGTCACCCC 60.065 52.381 0.00 0.00 0.00 4.95
3004 4108 2.292267 CTCACAATATGCTGGTCACCC 58.708 52.381 0.00 0.00 0.00 4.61
3005 4109 2.292267 CCTCACAATATGCTGGTCACC 58.708 52.381 0.00 0.00 0.00 4.02
3123 4230 1.348036 GACTGGATACTGGGGTATGCC 59.652 57.143 0.00 0.00 43.24 4.40
3170 4289 4.017499 AGCTATTCCAACAACCCCTAATGT 60.017 41.667 0.00 0.00 0.00 2.71
3174 4293 4.340617 CAAAGCTATTCCAACAACCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
3425 4545 3.525268 ACTTGGGTGCAAACTTTGAAG 57.475 42.857 5.65 2.65 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.