Multiple sequence alignment - TraesCS3A01G399600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G399600 chr3A 100.000 3984 0 0 1 3984 646581813 646585796 0.000000e+00 7358.0
1 TraesCS3A01G399600 chr3A 88.069 461 42 8 1226 1684 376082734 376082285 5.860000e-148 534.0
2 TraesCS3A01G399600 chr3A 87.905 463 38 12 1226 1684 569878718 569878270 2.730000e-146 529.0
3 TraesCS3A01G399600 chr3A 87.379 103 13 0 541 643 641321466 641321568 6.990000e-23 119.0
4 TraesCS3A01G399600 chr3D 87.536 3867 309 76 151 3930 508584212 508587992 0.000000e+00 4311.0
5 TraesCS3A01G399600 chr3D 87.037 108 11 3 541 647 501802633 501802738 6.990000e-23 119.0
6 TraesCS3A01G399600 chr3D 100.000 28 0 0 126 153 8340473 8340500 7.000000e-03 52.8
7 TraesCS3A01G399600 chr3B 88.812 3173 230 62 824 3963 671748724 671751804 0.000000e+00 3777.0
8 TraesCS3A01G399600 chr2D 89.201 463 37 8 1226 1684 104590996 104591449 2.080000e-157 566.0
9 TraesCS3A01G399600 chr4B 88.362 464 40 9 1226 1684 521705211 521705665 2.710000e-151 545.0
10 TraesCS3A01G399600 chr7A 88.095 462 43 8 1226 1684 14525135 14524683 4.530000e-149 538.0
11 TraesCS3A01G399600 chr7A 79.558 181 26 6 539 708 552530389 552530569 6.990000e-23 119.0
12 TraesCS3A01G399600 chr7B 87.852 461 43 9 1226 1684 398033660 398034109 2.730000e-146 529.0
13 TraesCS3A01G399600 chr7B 87.963 108 11 2 541 648 60051021 60051126 4.180000e-25 126.0
14 TraesCS3A01G399600 chr2B 86.813 455 49 7 1226 1678 137369955 137369510 7.690000e-137 497.0
15 TraesCS3A01G399600 chr6B 86.393 463 47 11 1226 1684 695594208 695594658 3.580000e-135 492.0
16 TraesCS3A01G399600 chr6B 76.250 240 40 13 540 765 189802338 189802102 1.170000e-20 111.0
17 TraesCS3A01G399600 chr6B 82.906 117 17 3 651 765 204856642 204856527 7.040000e-18 102.0
18 TraesCS3A01G399600 chr1D 80.738 244 26 11 541 765 23438041 23437800 1.900000e-38 171.0
19 TraesCS3A01G399600 chr1D 75.909 220 39 8 558 765 166317323 166317106 2.530000e-17 100.0
20 TraesCS3A01G399600 chr5D 80.252 238 32 8 541 765 538171774 538171539 8.860000e-37 165.0
21 TraesCS3A01G399600 chr5D 76.170 235 42 8 543 765 349592822 349593054 1.170000e-20 111.0
22 TraesCS3A01G399600 chr5D 83.051 118 17 3 650 765 169817165 169817281 1.960000e-18 104.0
23 TraesCS3A01G399600 chr7D 78.243 239 36 13 540 765 565693673 565693438 5.370000e-29 139.0
24 TraesCS3A01G399600 chr7D 78.414 227 32 11 541 765 620000038 620000249 8.980000e-27 132.0
25 TraesCS3A01G399600 chr7D 76.033 242 36 18 540 765 79641309 79641544 5.450000e-19 106.0
26 TraesCS3A01G399600 chr5B 78.924 223 34 11 554 765 228732688 228732908 5.370000e-29 139.0
27 TraesCS3A01G399600 chr5B 83.761 117 16 3 651 765 356150551 356150436 1.510000e-19 108.0
28 TraesCS3A01G399600 chr6A 89.796 49 4 1 442 490 478015085 478015038 1.200000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G399600 chr3A 646581813 646585796 3983 False 7358 7358 100.000 1 3984 1 chr3A.!!$F2 3983
1 TraesCS3A01G399600 chr3D 508584212 508587992 3780 False 4311 4311 87.536 151 3930 1 chr3D.!!$F3 3779
2 TraesCS3A01G399600 chr3B 671748724 671751804 3080 False 3777 3777 88.812 824 3963 1 chr3B.!!$F1 3139

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 344 0.178533 AACCCCGAAGAACACGTGAA 59.821 50.0 25.01 0.0 0.00 3.18 F
1231 1275 0.328926 CCGCCCAAGGGTAAAACCTA 59.671 55.0 7.05 0.0 40.87 3.08 F
2412 2476 0.106918 TTCAACCGAAAGTGTGGGCT 60.107 50.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 1511 0.396435 AGGTTCCGCATGACACTTGA 59.604 50.0 0.0 0.0 0.00 3.02 R
2519 2583 0.039437 TTCAGAAGCCGTCGTCAGTC 60.039 55.0 0.0 0.0 0.00 3.51 R
3541 3624 0.450983 GGAGCACAAATCTCAGCAGC 59.549 55.0 0.0 0.0 32.38 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.452600 TTTTCAGGGAAGCACAAGGT 57.547 45.000 0.00 0.00 0.00 3.50
51 52 2.452600 TTTCAGGGAAGCACAAGGTT 57.547 45.000 0.00 0.00 38.36 3.50
52 53 1.691196 TTCAGGGAAGCACAAGGTTG 58.309 50.000 0.00 0.00 35.19 3.77
53 54 0.823356 TCAGGGAAGCACAAGGTTGC 60.823 55.000 0.00 0.00 42.04 4.17
80 81 3.774066 CACATGATGTGCTTCTCGTAGA 58.226 45.455 13.15 0.00 41.89 2.59
81 82 4.176271 CACATGATGTGCTTCTCGTAGAA 58.824 43.478 13.15 0.00 41.89 2.10
89 90 2.409152 CTTCTCGTAGAAGCGGATCC 57.591 55.000 0.00 0.00 44.35 3.36
90 91 1.950909 CTTCTCGTAGAAGCGGATCCT 59.049 52.381 10.75 0.00 44.35 3.24
91 92 1.309950 TCTCGTAGAAGCGGATCCTG 58.690 55.000 10.75 4.67 34.09 3.86
92 93 1.025812 CTCGTAGAAGCGGATCCTGT 58.974 55.000 10.75 0.00 34.09 4.00
93 94 0.738975 TCGTAGAAGCGGATCCTGTG 59.261 55.000 10.75 0.00 0.00 3.66
94 95 0.872021 CGTAGAAGCGGATCCTGTGC 60.872 60.000 10.75 6.06 0.00 4.57
95 96 0.461961 GTAGAAGCGGATCCTGTGCT 59.538 55.000 10.75 8.57 41.60 4.40
98 99 3.346426 AAGCGGATCCTGTGCTTTT 57.654 47.368 16.90 0.00 46.12 2.27
99 100 1.620822 AAGCGGATCCTGTGCTTTTT 58.379 45.000 16.90 0.00 46.12 1.94
140 141 4.974368 TTTTTCCTTTTCGAGAAGCACA 57.026 36.364 10.12 0.00 0.00 4.57
141 142 5.514274 TTTTTCCTTTTCGAGAAGCACAT 57.486 34.783 10.12 0.00 0.00 3.21
142 143 4.749245 TTTCCTTTTCGAGAAGCACATC 57.251 40.909 10.12 0.00 0.00 3.06
143 144 3.685139 TCCTTTTCGAGAAGCACATCT 57.315 42.857 10.12 0.00 0.00 2.90
144 145 4.801330 TCCTTTTCGAGAAGCACATCTA 57.199 40.909 10.12 0.00 0.00 1.98
145 146 5.344743 TCCTTTTCGAGAAGCACATCTAT 57.655 39.130 10.12 0.00 0.00 1.98
146 147 5.111989 TCCTTTTCGAGAAGCACATCTATG 58.888 41.667 10.12 0.00 0.00 2.23
147 148 4.260538 CCTTTTCGAGAAGCACATCTATGC 60.261 45.833 10.12 0.00 46.50 3.14
156 157 1.863454 GCACATCTATGCTTCTCACGG 59.137 52.381 0.00 0.00 42.62 4.94
157 158 2.481969 GCACATCTATGCTTCTCACGGA 60.482 50.000 0.00 0.00 42.62 4.69
158 159 3.785486 CACATCTATGCTTCTCACGGAA 58.215 45.455 0.00 0.00 0.00 4.30
165 166 3.595691 CTTCTCACGGAAGCACAGT 57.404 52.632 0.00 0.00 43.88 3.55
166 167 1.871080 CTTCTCACGGAAGCACAGTT 58.129 50.000 0.00 0.00 43.88 3.16
167 168 1.528586 CTTCTCACGGAAGCACAGTTG 59.471 52.381 0.00 0.00 43.88 3.16
168 169 0.464036 TCTCACGGAAGCACAGTTGT 59.536 50.000 0.00 0.00 0.00 3.32
169 170 1.684450 TCTCACGGAAGCACAGTTGTA 59.316 47.619 0.00 0.00 0.00 2.41
170 171 2.299013 TCTCACGGAAGCACAGTTGTAT 59.701 45.455 0.00 0.00 0.00 2.29
171 172 3.067106 CTCACGGAAGCACAGTTGTATT 58.933 45.455 0.00 0.00 0.00 1.89
172 173 4.021807 TCTCACGGAAGCACAGTTGTATTA 60.022 41.667 0.00 0.00 0.00 0.98
177 178 4.688879 CGGAAGCACAGTTGTATTACTGAA 59.311 41.667 10.46 0.00 46.72 3.02
182 183 5.934625 AGCACAGTTGTATTACTGAAGGAAG 59.065 40.000 10.46 0.00 46.72 3.46
205 206 0.321564 AACTCTGCTGCGCATGGTAA 60.322 50.000 12.24 0.00 38.13 2.85
260 262 6.534793 TGTGCTTCAAAAGTCAAAAGAAATCC 59.465 34.615 0.00 0.00 0.00 3.01
265 267 6.581712 TCAAAAGTCAAAAGAAATCCCCAAG 58.418 36.000 0.00 0.00 0.00 3.61
278 280 7.073208 AGAAATCCCCAAGAACTTAGGAAAAA 58.927 34.615 8.77 0.00 30.85 1.94
279 281 7.734865 AGAAATCCCCAAGAACTTAGGAAAAAT 59.265 33.333 8.77 0.00 30.85 1.82
282 284 6.010219 TCCCCAAGAACTTAGGAAAAATCAG 58.990 40.000 0.91 0.00 0.00 2.90
283 285 5.185828 CCCCAAGAACTTAGGAAAAATCAGG 59.814 44.000 0.91 0.00 0.00 3.86
313 316 5.008712 ACCGAAAAGCCAAAAACAACAAAAA 59.991 32.000 0.00 0.00 0.00 1.94
314 317 6.089476 CCGAAAAGCCAAAAACAACAAAAAT 58.911 32.000 0.00 0.00 0.00 1.82
315 318 6.250315 CCGAAAAGCCAAAAACAACAAAAATC 59.750 34.615 0.00 0.00 0.00 2.17
318 321 8.686397 AAAAGCCAAAAACAACAAAAATCATC 57.314 26.923 0.00 0.00 0.00 2.92
327 330 8.445275 AAACAACAAAAATCATCTAAAACCCC 57.555 30.769 0.00 0.00 0.00 4.95
328 331 6.220201 ACAACAAAAATCATCTAAAACCCCG 58.780 36.000 0.00 0.00 0.00 5.73
330 333 6.658188 ACAAAAATCATCTAAAACCCCGAA 57.342 33.333 0.00 0.00 0.00 4.30
331 334 6.687604 ACAAAAATCATCTAAAACCCCGAAG 58.312 36.000 0.00 0.00 0.00 3.79
333 336 7.014808 ACAAAAATCATCTAAAACCCCGAAGAA 59.985 33.333 0.00 0.00 0.00 2.52
334 337 6.510879 AAATCATCTAAAACCCCGAAGAAC 57.489 37.500 0.00 0.00 0.00 3.01
335 338 4.627284 TCATCTAAAACCCCGAAGAACA 57.373 40.909 0.00 0.00 0.00 3.18
336 339 4.320870 TCATCTAAAACCCCGAAGAACAC 58.679 43.478 0.00 0.00 0.00 3.32
337 340 2.758009 TCTAAAACCCCGAAGAACACG 58.242 47.619 0.00 0.00 0.00 4.49
338 341 2.102925 TCTAAAACCCCGAAGAACACGT 59.897 45.455 0.00 0.00 0.00 4.49
339 342 1.018910 AAAACCCCGAAGAACACGTG 58.981 50.000 15.48 15.48 0.00 4.49
341 344 0.178533 AACCCCGAAGAACACGTGAA 59.821 50.000 25.01 0.00 0.00 3.18
345 348 2.292292 CCCCGAAGAACACGTGAAAAAT 59.708 45.455 25.01 3.82 0.00 1.82
346 349 3.551551 CCCGAAGAACACGTGAAAAATC 58.448 45.455 25.01 12.10 0.00 2.17
349 352 5.389516 CCCGAAGAACACGTGAAAAATCTAG 60.390 44.000 25.01 13.11 0.00 2.43
363 366 8.286097 GTGAAAAATCTAGAGAAAGTGTCCAAG 58.714 37.037 0.00 0.00 0.00 3.61
367 370 2.156343 AGAGAAAGTGTCCAAGACGC 57.844 50.000 0.01 0.01 42.60 5.19
385 388 2.430921 GACACGTGGCCGAGACTG 60.431 66.667 21.57 0.00 37.88 3.51
397 400 1.367840 GAGACTGGACGCACCACTT 59.632 57.895 0.00 0.00 44.64 3.16
440 463 8.962884 AAAATTGACTCTTGCCAATTAGTTTT 57.037 26.923 0.00 0.00 40.78 2.43
441 464 8.593492 AAATTGACTCTTGCCAATTAGTTTTC 57.407 30.769 0.00 0.00 40.78 2.29
498 521 5.556915 TCATAACAATTATAGAAGCCCCGG 58.443 41.667 0.00 0.00 0.00 5.73
537 560 0.827368 GCTGCTCTAGGTTGTAGCCT 59.173 55.000 9.06 0.00 42.43 4.58
548 571 4.548451 GGTTGTAGCCTTGTACTACCTT 57.452 45.455 7.06 0.00 42.33 3.50
571 594 3.371595 CGTCCTGATTTATTGGTCCCCTT 60.372 47.826 0.00 0.00 0.00 3.95
580 603 8.053963 TGATTTATTGGTCCCCTTCGTATTTTA 58.946 33.333 0.00 0.00 0.00 1.52
593 616 8.868916 CCCTTCGTATTTTATGTCAAATTTTGG 58.131 33.333 9.18 0.00 0.00 3.28
751 774 8.341903 CACAAAATTTTGAGGGAACCAATAAAC 58.658 33.333 32.20 0.00 46.67 2.01
765 788 3.135895 CCAATAAACCAGGACGGAGGTAT 59.864 47.826 0.00 0.00 37.07 2.73
766 789 4.377897 CAATAAACCAGGACGGAGGTATC 58.622 47.826 0.00 0.00 37.07 2.24
767 790 1.201424 AAACCAGGACGGAGGTATCC 58.799 55.000 0.00 0.00 42.81 2.59
768 791 0.338814 AACCAGGACGGAGGTATCCT 59.661 55.000 0.00 0.00 46.78 3.24
866 899 4.484987 CCGTTTAGTGGCCCAACA 57.515 55.556 0.00 0.00 0.00 3.33
872 905 1.394618 TTAGTGGCCCAACACACAAC 58.605 50.000 0.00 0.00 43.72 3.32
898 931 1.065782 GTTCTTCCCTCTCCTTGCCTC 60.066 57.143 0.00 0.00 0.00 4.70
919 952 4.237724 TCGCTGCAGATAATTTCGGATAG 58.762 43.478 20.43 0.00 0.00 2.08
1062 1098 2.044806 GATGCCACGGCTACTCCCAT 62.045 60.000 9.92 0.00 42.51 4.00
1073 1109 2.501723 GCTACTCCCATCTTCAGGTTCA 59.498 50.000 0.00 0.00 0.00 3.18
1095 1131 4.090930 CAGTTAATCCTTCAACCGTACGTG 59.909 45.833 15.21 7.04 0.00 4.49
1121 1157 2.866028 CAAGCAGCGCAGGAGTTC 59.134 61.111 11.47 0.00 0.00 3.01
1122 1158 1.962822 CAAGCAGCGCAGGAGTTCA 60.963 57.895 11.47 0.00 0.00 3.18
1193 1237 4.665451 TGTCCACATGAAGATTGGTGATT 58.335 39.130 0.00 0.00 33.16 2.57
1195 1239 4.946157 GTCCACATGAAGATTGGTGATTCT 59.054 41.667 0.00 0.00 33.16 2.40
1231 1275 0.328926 CCGCCCAAGGGTAAAACCTA 59.671 55.000 7.05 0.00 40.87 3.08
1250 1294 5.341169 ACCTAAATTTTCCATGGACCATGT 58.659 37.500 28.66 13.79 39.94 3.21
1256 1300 6.678568 ATTTTCCATGGACCATGTTTGTAA 57.321 33.333 28.66 16.73 39.94 2.41
1257 1301 5.461032 TTTCCATGGACCATGTTTGTAAC 57.539 39.130 28.66 0.00 39.94 2.50
1269 1313 6.148948 CCATGTTTGTAACCTGTATGTGTTG 58.851 40.000 0.00 0.00 0.00 3.33
1272 1316 5.358442 TGTTTGTAACCTGTATGTGTTGCTT 59.642 36.000 0.00 0.00 0.00 3.91
1276 1321 5.358442 TGTAACCTGTATGTGTTGCTTTTGT 59.642 36.000 0.00 0.00 0.00 2.83
1299 1344 4.380531 TGCTTCAGTCTTCAGTTTACCAG 58.619 43.478 0.00 0.00 0.00 4.00
1300 1345 3.748568 GCTTCAGTCTTCAGTTTACCAGG 59.251 47.826 0.00 0.00 0.00 4.45
1301 1346 4.503296 GCTTCAGTCTTCAGTTTACCAGGA 60.503 45.833 0.00 0.00 0.00 3.86
1311 1356 6.037786 TCAGTTTACCAGGAGATACTTGTG 57.962 41.667 0.00 0.00 0.00 3.33
1314 1359 6.021030 AGTTTACCAGGAGATACTTGTGGTA 58.979 40.000 0.00 0.00 41.76 3.25
1354 1401 1.001633 GTTTCTACCGGGAGAAGTGCA 59.998 52.381 27.74 11.83 36.80 4.57
1403 1450 0.538584 TCGATCAGGTGAGCTGCAAT 59.461 50.000 6.80 0.00 0.00 3.56
1424 1471 6.267817 CAATTTCTGCCATAACATACCACTG 58.732 40.000 0.00 0.00 0.00 3.66
1425 1472 4.835284 TTCTGCCATAACATACCACTGA 57.165 40.909 0.00 0.00 0.00 3.41
1435 1482 7.011389 CCATAACATACCACTGAAGTACATGTG 59.989 40.741 9.11 0.00 0.00 3.21
1438 1485 5.700832 ACATACCACTGAAGTACATGTGTTG 59.299 40.000 9.11 0.00 0.00 3.33
1442 1489 5.221722 ACCACTGAAGTACATGTGTTGATCT 60.222 40.000 9.11 0.00 0.00 2.75
1443 1490 5.702670 CCACTGAAGTACATGTGTTGATCTT 59.297 40.000 9.11 3.62 0.00 2.40
1448 1495 6.204688 TGAAGTACATGTGTTGATCTTTGTCC 59.795 38.462 9.11 0.00 0.00 4.02
1452 1499 3.186702 TGTGTTGATCTTTGTCCGTGA 57.813 42.857 0.00 0.00 0.00 4.35
1453 1500 3.738982 TGTGTTGATCTTTGTCCGTGAT 58.261 40.909 0.00 0.00 0.00 3.06
1454 1501 3.498018 TGTGTTGATCTTTGTCCGTGATG 59.502 43.478 0.00 0.00 0.00 3.07
1456 1511 4.024048 GTGTTGATCTTTGTCCGTGATGTT 60.024 41.667 0.00 0.00 0.00 2.71
1460 1515 4.452114 TGATCTTTGTCCGTGATGTTCAAG 59.548 41.667 0.00 0.00 0.00 3.02
1463 1518 2.613026 TGTCCGTGATGTTCAAGTGT 57.387 45.000 0.00 0.00 0.00 3.55
1464 1519 2.479837 TGTCCGTGATGTTCAAGTGTC 58.520 47.619 0.00 0.00 0.00 3.67
1466 1521 3.067106 GTCCGTGATGTTCAAGTGTCAT 58.933 45.455 0.00 0.00 0.00 3.06
1469 1524 2.722706 CGTGATGTTCAAGTGTCATGCG 60.723 50.000 0.00 0.00 0.00 4.73
1470 1525 1.805943 TGATGTTCAAGTGTCATGCGG 59.194 47.619 0.00 0.00 0.00 5.69
1481 1536 1.278985 TGTCATGCGGAACCTTCAGAT 59.721 47.619 0.00 0.00 0.00 2.90
1487 1542 2.275318 GCGGAACCTTCAGATTCAGAG 58.725 52.381 0.00 0.00 0.00 3.35
1488 1543 2.354203 GCGGAACCTTCAGATTCAGAGT 60.354 50.000 0.00 0.00 0.00 3.24
1489 1544 3.866449 GCGGAACCTTCAGATTCAGAGTT 60.866 47.826 0.00 0.00 0.00 3.01
1490 1545 3.929610 CGGAACCTTCAGATTCAGAGTTC 59.070 47.826 0.00 0.00 33.16 3.01
1491 1546 4.561530 CGGAACCTTCAGATTCAGAGTTCA 60.562 45.833 10.99 0.00 35.09 3.18
1492 1547 4.934602 GGAACCTTCAGATTCAGAGTTCAG 59.065 45.833 10.99 0.00 35.09 3.02
1493 1548 5.279708 GGAACCTTCAGATTCAGAGTTCAGA 60.280 44.000 10.99 0.00 35.09 3.27
1494 1549 5.146010 ACCTTCAGATTCAGAGTTCAGAC 57.854 43.478 0.00 0.00 0.00 3.51
1495 1550 4.590647 ACCTTCAGATTCAGAGTTCAGACA 59.409 41.667 0.00 0.00 0.00 3.41
1496 1551 4.928615 CCTTCAGATTCAGAGTTCAGACAC 59.071 45.833 0.00 0.00 0.00 3.67
1497 1552 5.279406 CCTTCAGATTCAGAGTTCAGACACT 60.279 44.000 0.00 0.00 0.00 3.55
1498 1553 5.131594 TCAGATTCAGAGTTCAGACACTG 57.868 43.478 0.00 0.00 43.30 3.66
1499 1554 4.586421 TCAGATTCAGAGTTCAGACACTGT 59.414 41.667 0.00 0.00 42.74 3.55
1505 1560 4.081697 TCAGAGTTCAGACACTGTGTTGAA 60.082 41.667 22.67 22.67 42.74 2.69
1515 1570 5.705441 AGACACTGTGTTGAAGTTTTCAGAA 59.295 36.000 15.54 0.00 41.38 3.02
1644 1699 1.401761 TTGTTTGTGCACTCTGCCAT 58.598 45.000 19.41 0.00 44.23 4.40
1673 1728 9.462174 CATGTTAAATTAAAGCTGTCAACTCAA 57.538 29.630 0.00 0.00 0.00 3.02
1717 1772 7.334844 TGTCCACATCTAGTTAGTCACATAG 57.665 40.000 0.00 0.00 0.00 2.23
1718 1773 6.890268 TGTCCACATCTAGTTAGTCACATAGT 59.110 38.462 0.00 0.00 0.00 2.12
1722 1777 7.492669 CCACATCTAGTTAGTCACATAGTTTGG 59.507 40.741 0.00 0.00 0.00 3.28
1727 1782 4.997395 AGTTAGTCACATAGTTTGGTGCAG 59.003 41.667 0.00 0.00 35.04 4.41
1734 1789 5.048782 TCACATAGTTTGGTGCAGACATTTC 60.049 40.000 0.00 0.00 35.04 2.17
1736 1791 5.182001 ACATAGTTTGGTGCAGACATTTCTC 59.818 40.000 0.00 0.00 0.00 2.87
1750 1805 8.940952 GCAGACATTTCTCTTCAACTTAATACT 58.059 33.333 0.00 0.00 0.00 2.12
1774 1829 9.832445 ACTAAGGACATTGTACTATGGTTAATG 57.168 33.333 19.28 13.62 36.15 1.90
1776 1831 8.732746 AAGGACATTGTACTATGGTTAATGAC 57.267 34.615 19.28 14.53 35.14 3.06
1777 1832 6.984474 AGGACATTGTACTATGGTTAATGACG 59.016 38.462 19.28 0.00 35.14 4.35
1778 1833 6.759827 GGACATTGTACTATGGTTAATGACGT 59.240 38.462 19.28 0.00 35.14 4.34
1779 1834 7.922278 GGACATTGTACTATGGTTAATGACGTA 59.078 37.037 19.28 0.00 35.14 3.57
1780 1835 8.867112 ACATTGTACTATGGTTAATGACGTAG 57.133 34.615 19.28 0.00 35.14 3.51
1781 1836 7.924412 ACATTGTACTATGGTTAATGACGTAGG 59.076 37.037 19.28 0.00 35.14 3.18
1782 1837 6.395426 TGTACTATGGTTAATGACGTAGGG 57.605 41.667 0.00 0.00 0.00 3.53
1783 1838 4.332428 ACTATGGTTAATGACGTAGGGC 57.668 45.455 0.00 0.00 0.00 5.19
1784 1839 3.707611 ACTATGGTTAATGACGTAGGGCA 59.292 43.478 0.00 0.00 0.00 5.36
1827 1882 2.158623 TCTGATGCTGGGAACTTGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
1935 1990 2.106684 GGTTCCAGGTTTCAGAAGGTCT 59.893 50.000 0.00 0.00 0.00 3.85
1947 2002 5.222278 TCAGAAGGTCTAAGGGAGGTATT 57.778 43.478 0.00 0.00 0.00 1.89
1948 2003 4.962995 TCAGAAGGTCTAAGGGAGGTATTG 59.037 45.833 0.00 0.00 0.00 1.90
1949 2004 4.962995 CAGAAGGTCTAAGGGAGGTATTGA 59.037 45.833 0.00 0.00 0.00 2.57
1950 2005 5.604650 CAGAAGGTCTAAGGGAGGTATTGAT 59.395 44.000 0.00 0.00 0.00 2.57
1951 2006 6.100424 CAGAAGGTCTAAGGGAGGTATTGATT 59.900 42.308 0.00 0.00 0.00 2.57
1952 2007 6.327887 AGAAGGTCTAAGGGAGGTATTGATTC 59.672 42.308 0.00 0.00 0.00 2.52
1953 2008 5.538877 AGGTCTAAGGGAGGTATTGATTCA 58.461 41.667 0.00 0.00 0.00 2.57
1954 2009 6.153924 AGGTCTAAGGGAGGTATTGATTCAT 58.846 40.000 0.00 0.00 0.00 2.57
1955 2010 6.621514 AGGTCTAAGGGAGGTATTGATTCATT 59.378 38.462 0.00 0.00 0.00 2.57
1956 2011 7.794683 AGGTCTAAGGGAGGTATTGATTCATTA 59.205 37.037 0.00 0.00 0.00 1.90
1957 2012 8.437575 GGTCTAAGGGAGGTATTGATTCATTAA 58.562 37.037 0.00 0.00 0.00 1.40
1958 2013 9.274206 GTCTAAGGGAGGTATTGATTCATTAAC 57.726 37.037 0.00 0.00 0.00 2.01
1959 2014 8.437575 TCTAAGGGAGGTATTGATTCATTAACC 58.562 37.037 1.02 3.16 0.00 2.85
1986 2041 3.181456 CCCCATTTCCTTGCAAGAAACAA 60.181 43.478 28.05 13.85 36.13 2.83
1988 2043 4.453136 CCCATTTCCTTGCAAGAAACAATG 59.547 41.667 28.05 23.62 36.13 2.82
1990 2045 5.528320 CCATTTCCTTGCAAGAAACAATGTT 59.472 36.000 28.05 7.37 36.13 2.71
1991 2046 6.705381 CCATTTCCTTGCAAGAAACAATGTTA 59.295 34.615 28.05 0.00 36.13 2.41
1992 2047 7.388500 CCATTTCCTTGCAAGAAACAATGTTAT 59.612 33.333 28.05 0.00 36.13 1.89
1993 2048 9.421806 CATTTCCTTGCAAGAAACAATGTTATA 57.578 29.630 28.05 0.00 36.13 0.98
2018 2073 4.794278 TTGATTGCTTGCATCAAGTCAT 57.206 36.364 8.18 1.57 42.77 3.06
2038 2093 8.807667 AGTCATTGAAGCTTCTAACAATTTTG 57.192 30.769 26.09 12.42 31.85 2.44
2101 2156 5.304101 AGGGAAAACATCAAATGTAAGTGCA 59.696 36.000 0.00 0.00 44.07 4.57
2122 2177 3.000815 TGAACCTTTCACGCCTCAC 57.999 52.632 0.00 0.00 34.08 3.51
2129 2184 1.267806 CTTTCACGCCTCACTTGCAAT 59.732 47.619 0.00 0.00 0.00 3.56
2130 2185 0.592637 TTCACGCCTCACTTGCAATG 59.407 50.000 0.00 0.84 0.00 2.82
2132 2187 0.386352 CACGCCTCACTTGCAATGTG 60.386 55.000 17.67 17.67 42.78 3.21
2133 2188 1.210931 CGCCTCACTTGCAATGTGG 59.789 57.895 21.19 19.55 41.82 4.17
2134 2189 1.588082 GCCTCACTTGCAATGTGGG 59.412 57.895 21.19 19.23 41.77 4.61
2135 2190 0.895100 GCCTCACTTGCAATGTGGGA 60.895 55.000 22.66 9.16 44.64 4.37
2136 2191 1.171308 CCTCACTTGCAATGTGGGAG 58.829 55.000 22.66 16.59 44.64 4.30
2137 2192 0.524862 CTCACTTGCAATGTGGGAGC 59.475 55.000 18.53 0.00 44.64 4.70
2138 2193 0.111061 TCACTTGCAATGTGGGAGCT 59.889 50.000 21.19 0.00 41.82 4.09
2139 2194 0.963962 CACTTGCAATGTGGGAGCTT 59.036 50.000 16.58 0.00 38.24 3.74
2140 2195 1.342174 CACTTGCAATGTGGGAGCTTT 59.658 47.619 16.58 0.00 38.24 3.51
2141 2196 2.041701 ACTTGCAATGTGGGAGCTTTT 58.958 42.857 0.00 0.00 0.00 2.27
2152 2207 1.045407 GGAGCTTTTCCCCGGTTTTT 58.955 50.000 0.00 0.00 40.37 1.94
2156 2211 1.539496 GCTTTTCCCCGGTTTTTGTCC 60.539 52.381 0.00 0.00 0.00 4.02
2187 2242 2.230266 CCGTTCCAAATGGGGTTTAGTG 59.770 50.000 0.00 0.00 37.22 2.74
2189 2244 4.073549 CGTTCCAAATGGGGTTTAGTGTA 58.926 43.478 0.00 0.00 37.22 2.90
2241 2301 3.914364 GGCTAACTTTTCTTTCACGCATG 59.086 43.478 0.00 0.00 0.00 4.06
2252 2312 2.975410 TCACGCATGCTTTTCAAGAG 57.025 45.000 17.13 0.00 0.00 2.85
2282 2342 0.462759 CAACTCCTCCTCGGAATGGC 60.463 60.000 0.00 0.00 42.53 4.40
2375 2439 1.655654 CATCGCCGAGTACGCTCAG 60.656 63.158 0.00 0.00 41.71 3.35
2411 2475 0.741915 TTTCAACCGAAAGTGTGGGC 59.258 50.000 0.00 0.00 36.19 5.36
2412 2476 0.106918 TTCAACCGAAAGTGTGGGCT 60.107 50.000 0.00 0.00 0.00 5.19
2413 2477 0.759959 TCAACCGAAAGTGTGGGCTA 59.240 50.000 0.00 0.00 0.00 3.93
2428 2492 8.779096 AGTGTGGGCTACTACTAAATACTAAT 57.221 34.615 1.79 0.00 0.00 1.73
2473 2537 7.146648 GGCTAGACATAGACATAAACTACACC 58.853 42.308 0.00 0.00 36.97 4.16
2519 2583 1.408266 CCCCCACATTAAGAACCGAGG 60.408 57.143 0.00 0.00 0.00 4.63
2529 2593 1.154263 GAACCGAGGACTGACGACG 60.154 63.158 0.00 0.00 0.00 5.12
2673 2737 1.247567 AGAAGGTTGGTGCCATTTCG 58.752 50.000 0.00 0.00 0.00 3.46
2690 2754 8.402472 TGCCATTTCGTATAAAATTAGAACAGG 58.598 33.333 0.00 0.00 0.00 4.00
2699 2763 9.067986 GTATAAAATTAGAACAGGCTAGCCAAT 57.932 33.333 34.70 20.86 38.92 3.16
2722 2786 9.485206 CAATCTTTGACTTTTTGGATTCAGAAT 57.515 29.630 0.00 0.00 0.00 2.40
2737 2801 1.398390 CAGAATAAACTGACGCTGGCC 59.602 52.381 0.00 0.00 39.94 5.36
2749 2813 2.879907 CTGGCCTTGCAACCGATG 59.120 61.111 3.32 0.00 0.00 3.84
2854 2918 2.678336 GTTCGGGTTCAATGTGATCCTC 59.322 50.000 5.55 0.00 36.67 3.71
2878 2942 1.216710 GGAGAAGGAGCCTGACACG 59.783 63.158 0.00 0.00 0.00 4.49
2902 2966 2.556622 TGACGCCATTGATATCGAGCTA 59.443 45.455 0.00 0.00 0.00 3.32
2920 2984 1.389609 TATCGGACTCCAAGGACGCC 61.390 60.000 0.00 0.00 0.00 5.68
2930 2994 4.988716 AGGACGCCCCTGACGTGA 62.989 66.667 0.00 0.00 45.61 4.35
2931 2995 3.998672 GGACGCCCCTGACGTGAA 61.999 66.667 0.00 0.00 45.24 3.18
2944 3008 1.444553 CGTGAAGCAGTCCGACTCC 60.445 63.158 0.00 0.00 0.00 3.85
3023 3087 3.740115 CCTCCGTGTATTTATTCCCTGG 58.260 50.000 0.00 0.00 0.00 4.45
3034 3098 2.610438 ATTCCCTGGTGAATGTGCTT 57.390 45.000 8.90 0.00 33.77 3.91
3173 3254 2.268298 CACGTTAGATTTGGGGAGACG 58.732 52.381 0.00 0.00 35.39 4.18
3263 3344 0.107361 TCTGCAGCATGATCCACTGG 60.107 55.000 9.47 0.00 39.69 4.00
3268 3349 1.378911 GCATGATCCACTGGCACCA 60.379 57.895 0.00 0.00 0.00 4.17
3304 3385 4.024893 CGAACTACCCGATCAATCATTTGG 60.025 45.833 0.00 0.00 33.44 3.28
3305 3386 3.820557 ACTACCCGATCAATCATTTGGG 58.179 45.455 0.00 0.00 42.50 4.12
3306 3387 1.402787 ACCCGATCAATCATTTGGGC 58.597 50.000 0.00 0.00 40.41 5.36
3307 3388 0.675633 CCCGATCAATCATTTGGGCC 59.324 55.000 0.00 0.00 33.44 5.80
3345 3427 2.280797 TCAAGCCTCACACGCCAC 60.281 61.111 0.00 0.00 0.00 5.01
3383 3466 2.818432 AGTGACCTAGTACCAACTCACG 59.182 50.000 0.00 0.00 37.15 4.35
3384 3467 1.542915 TGACCTAGTACCAACTCACGC 59.457 52.381 0.00 0.00 37.15 5.34
3385 3468 1.542915 GACCTAGTACCAACTCACGCA 59.457 52.381 0.00 0.00 37.15 5.24
3386 3469 1.271656 ACCTAGTACCAACTCACGCAC 59.728 52.381 0.00 0.00 37.15 5.34
3415 3498 5.748402 TGATCCATGCAAGAGAAATACAGT 58.252 37.500 0.00 0.00 0.00 3.55
3416 3499 6.888105 TGATCCATGCAAGAGAAATACAGTA 58.112 36.000 0.00 0.00 0.00 2.74
3417 3500 7.512130 TGATCCATGCAAGAGAAATACAGTAT 58.488 34.615 0.00 0.00 0.00 2.12
3461 3544 6.264518 TGTTCTTCCAACCCTATCTTGTTTTC 59.735 38.462 0.00 0.00 0.00 2.29
3494 3577 1.452108 GTGGCCTGGAAGAATCCCG 60.452 63.158 3.32 0.00 45.95 5.14
3514 3597 2.118313 CTGACATGACAGCATTCCCA 57.882 50.000 12.14 0.00 30.68 4.37
3541 3624 3.541831 CGCGACCGTTGGACGATG 61.542 66.667 11.64 0.00 46.05 3.84
3542 3625 3.849953 GCGACCGTTGGACGATGC 61.850 66.667 11.64 0.00 46.05 3.91
3561 3644 1.949547 GCTGCTGAGATTTGTGCTCCT 60.950 52.381 0.00 0.00 0.00 3.69
3564 3647 2.224597 TGCTGAGATTTGTGCTCCTTGA 60.225 45.455 0.00 0.00 0.00 3.02
3566 3649 3.442977 GCTGAGATTTGTGCTCCTTGATT 59.557 43.478 0.00 0.00 0.00 2.57
3567 3650 4.082354 GCTGAGATTTGTGCTCCTTGATTT 60.082 41.667 0.00 0.00 0.00 2.17
3568 3651 5.633830 TGAGATTTGTGCTCCTTGATTTC 57.366 39.130 0.00 0.00 0.00 2.17
3580 3663 7.439056 GTGCTCCTTGATTTCAGAAAATTCAAA 59.561 33.333 11.41 0.72 35.21 2.69
3603 3686 5.216622 AGGATTAGGTTAGTAGGTGCATCA 58.783 41.667 0.00 0.00 0.00 3.07
3626 3709 6.877322 TCAGTGCATGATAATGGATATGAGTG 59.123 38.462 0.00 0.00 31.12 3.51
3697 3783 1.672881 CGCAGGACCTGGAATGATTTC 59.327 52.381 23.09 1.92 31.21 2.17
3766 3856 4.321899 CGAATTCCCAGCAGAATCCAAAAA 60.322 41.667 0.00 0.00 35.40 1.94
3816 3906 6.289834 TCTCAAGAAAAACCCAACGTACATA 58.710 36.000 0.00 0.00 0.00 2.29
3827 3917 6.059484 ACCCAACGTACATATTATTCCCTTG 58.941 40.000 0.00 0.00 0.00 3.61
3887 3984 1.785041 CGGTTGGCAATCATAGGGCG 61.785 60.000 11.63 0.00 0.00 6.13
3904 4001 2.159379 GGGCGATGAAATCTTGGAACAC 60.159 50.000 0.00 0.00 42.58 3.32
3917 4014 3.855255 TGGAACACTGTGGATTCAGAA 57.145 42.857 13.09 0.00 38.63 3.02
3918 4015 3.743521 TGGAACACTGTGGATTCAGAAG 58.256 45.455 13.09 0.00 38.63 2.85
3930 4027 6.828273 TGTGGATTCAGAAGAAACTTTTCTCA 59.172 34.615 4.71 0.00 46.22 3.27
3942 4039 4.425577 ACTTTTCTCATTCATCGGCAAC 57.574 40.909 0.00 0.00 0.00 4.17
3963 4060 3.255725 CGGCGGTAGAATTTCTAACACA 58.744 45.455 18.98 0.00 36.48 3.72
3964 4061 3.869246 CGGCGGTAGAATTTCTAACACAT 59.131 43.478 18.98 0.00 36.48 3.21
3965 4062 4.331717 CGGCGGTAGAATTTCTAACACATT 59.668 41.667 18.98 0.00 36.48 2.71
3966 4063 5.501897 CGGCGGTAGAATTTCTAACACATTC 60.502 44.000 18.98 4.84 36.48 2.67
3967 4064 5.585047 GGCGGTAGAATTTCTAACACATTCT 59.415 40.000 18.98 3.14 36.48 2.40
3968 4065 6.238130 GGCGGTAGAATTTCTAACACATTCTC 60.238 42.308 18.98 0.65 36.48 2.87
3969 4066 6.238130 GCGGTAGAATTTCTAACACATTCTCC 60.238 42.308 18.98 7.72 36.48 3.71
3970 4067 7.042335 CGGTAGAATTTCTAACACATTCTCCT 58.958 38.462 18.98 0.00 36.48 3.69
3971 4068 8.195436 CGGTAGAATTTCTAACACATTCTCCTA 58.805 37.037 18.98 0.00 36.48 2.94
3972 4069 9.886132 GGTAGAATTTCTAACACATTCTCCTAA 57.114 33.333 15.17 0.00 36.69 2.69
3975 4072 9.965902 AGAATTTCTAACACATTCTCCTAATGT 57.034 29.630 0.00 0.00 41.18 2.71
3979 4076 8.662781 TTCTAACACATTCTCCTAATGTATGC 57.337 34.615 3.24 0.00 38.69 3.14
3980 4077 8.023021 TCTAACACATTCTCCTAATGTATGCT 57.977 34.615 3.24 0.00 38.69 3.79
3981 4078 8.144478 TCTAACACATTCTCCTAATGTATGCTC 58.856 37.037 3.24 0.00 38.69 4.26
3982 4079 6.239217 ACACATTCTCCTAATGTATGCTCA 57.761 37.500 3.24 0.00 38.69 4.26
3983 4080 6.835174 ACACATTCTCCTAATGTATGCTCAT 58.165 36.000 3.24 0.00 38.69 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.745968 ACCTTGTGCTTCCCTGAAAAA 58.254 42.857 0.00 0.00 0.00 1.94
31 32 2.430332 CAACCTTGTGCTTCCCTGAAAA 59.570 45.455 0.00 0.00 0.00 2.29
32 33 2.031120 CAACCTTGTGCTTCCCTGAAA 58.969 47.619 0.00 0.00 0.00 2.69
33 34 1.691196 CAACCTTGTGCTTCCCTGAA 58.309 50.000 0.00 0.00 0.00 3.02
34 35 0.823356 GCAACCTTGTGCTTCCCTGA 60.823 55.000 0.00 0.00 41.51 3.86
35 36 1.662044 GCAACCTTGTGCTTCCCTG 59.338 57.895 0.00 0.00 41.51 4.45
36 37 1.898574 CGCAACCTTGTGCTTCCCT 60.899 57.895 0.00 0.00 42.62 4.20
37 38 2.644992 CGCAACCTTGTGCTTCCC 59.355 61.111 0.00 0.00 42.62 3.97
38 39 1.452145 TTCCGCAACCTTGTGCTTCC 61.452 55.000 0.00 0.00 42.62 3.46
39 40 0.040067 CTTCCGCAACCTTGTGCTTC 60.040 55.000 0.00 0.00 42.62 3.86
40 41 2.032981 CTTCCGCAACCTTGTGCTT 58.967 52.632 0.00 0.00 42.62 3.91
41 42 2.555547 GCTTCCGCAACCTTGTGCT 61.556 57.895 0.00 0.00 42.62 4.40
42 43 2.050077 GCTTCCGCAACCTTGTGC 60.050 61.111 0.00 0.00 41.32 4.57
43 44 3.431055 TGCTTCCGCAACCTTGTG 58.569 55.556 0.00 0.00 44.62 3.33
51 52 2.173433 CACATCATGTGCTTCCGCA 58.827 52.632 4.43 0.00 41.89 5.69
59 60 4.267214 CTTCTACGAGAAGCACATCATGTG 59.733 45.833 13.93 13.93 44.35 3.21
60 61 4.428209 CTTCTACGAGAAGCACATCATGT 58.572 43.478 10.36 0.00 44.35 3.21
71 72 1.676529 CAGGATCCGCTTCTACGAGAA 59.323 52.381 5.98 0.00 34.06 2.87
72 73 1.309950 CAGGATCCGCTTCTACGAGA 58.690 55.000 5.98 0.00 34.06 4.04
73 74 1.025812 ACAGGATCCGCTTCTACGAG 58.974 55.000 5.98 0.00 34.06 4.18
74 75 0.738975 CACAGGATCCGCTTCTACGA 59.261 55.000 5.98 0.00 34.06 3.43
75 76 0.872021 GCACAGGATCCGCTTCTACG 60.872 60.000 5.98 0.00 0.00 3.51
76 77 0.461961 AGCACAGGATCCGCTTCTAC 59.538 55.000 5.98 0.00 29.87 2.59
77 78 1.195115 AAGCACAGGATCCGCTTCTA 58.805 50.000 16.90 0.00 42.11 2.10
78 79 0.326264 AAAGCACAGGATCCGCTTCT 59.674 50.000 21.22 11.59 44.93 2.85
79 80 1.168714 AAAAGCACAGGATCCGCTTC 58.831 50.000 21.22 7.28 44.93 3.86
81 82 3.346426 AAAAAGCACAGGATCCGCT 57.654 47.368 5.98 6.44 37.68 5.52
119 120 4.974368 TGTGCTTCTCGAAAAGGAAAAA 57.026 36.364 0.00 0.00 0.00 1.94
120 121 4.821805 AGATGTGCTTCTCGAAAAGGAAAA 59.178 37.500 0.00 0.00 0.00 2.29
121 122 4.389374 AGATGTGCTTCTCGAAAAGGAAA 58.611 39.130 0.00 0.00 0.00 3.13
122 123 4.008074 AGATGTGCTTCTCGAAAAGGAA 57.992 40.909 0.00 0.00 0.00 3.36
123 124 3.685139 AGATGTGCTTCTCGAAAAGGA 57.315 42.857 0.00 0.00 0.00 3.36
124 125 4.260538 GCATAGATGTGCTTCTCGAAAAGG 60.261 45.833 0.00 0.00 41.82 3.11
125 126 4.830912 GCATAGATGTGCTTCTCGAAAAG 58.169 43.478 0.00 0.00 41.82 2.27
126 127 4.864916 GCATAGATGTGCTTCTCGAAAA 57.135 40.909 0.00 0.00 41.82 2.29
136 137 1.863454 CCGTGAGAAGCATAGATGTGC 59.137 52.381 0.00 0.00 45.38 4.57
137 138 3.443099 TCCGTGAGAAGCATAGATGTG 57.557 47.619 0.00 0.00 0.00 3.21
138 139 4.052159 CTTCCGTGAGAAGCATAGATGT 57.948 45.455 0.00 0.00 45.38 3.06
148 149 1.134521 ACAACTGTGCTTCCGTGAGAA 60.135 47.619 0.00 0.00 0.00 2.87
149 150 0.464036 ACAACTGTGCTTCCGTGAGA 59.536 50.000 0.00 0.00 0.00 3.27
150 151 2.148916 TACAACTGTGCTTCCGTGAG 57.851 50.000 0.00 0.00 0.00 3.51
151 152 2.831685 ATACAACTGTGCTTCCGTGA 57.168 45.000 0.00 0.00 0.00 4.35
152 153 3.994392 AGTAATACAACTGTGCTTCCGTG 59.006 43.478 0.00 0.00 0.00 4.94
153 154 3.994392 CAGTAATACAACTGTGCTTCCGT 59.006 43.478 0.00 0.00 41.63 4.69
154 155 4.242475 TCAGTAATACAACTGTGCTTCCG 58.758 43.478 4.11 0.00 45.78 4.30
155 156 5.122396 CCTTCAGTAATACAACTGTGCTTCC 59.878 44.000 4.11 0.00 45.78 3.46
156 157 5.932303 TCCTTCAGTAATACAACTGTGCTTC 59.068 40.000 4.11 0.00 45.78 3.86
157 158 5.865085 TCCTTCAGTAATACAACTGTGCTT 58.135 37.500 4.11 0.00 45.78 3.91
158 159 5.483685 TCCTTCAGTAATACAACTGTGCT 57.516 39.130 4.11 0.00 45.78 4.40
159 160 5.390991 GCTTCCTTCAGTAATACAACTGTGC 60.391 44.000 4.11 0.00 45.78 4.57
160 161 5.700832 TGCTTCCTTCAGTAATACAACTGTG 59.299 40.000 4.11 0.00 45.78 3.66
161 162 5.865085 TGCTTCCTTCAGTAATACAACTGT 58.135 37.500 4.11 0.00 45.78 3.55
162 163 6.801539 TTGCTTCCTTCAGTAATACAACTG 57.198 37.500 0.00 0.00 46.78 3.16
163 164 7.502561 AGTTTTGCTTCCTTCAGTAATACAACT 59.497 33.333 0.00 0.00 0.00 3.16
164 165 7.649057 AGTTTTGCTTCCTTCAGTAATACAAC 58.351 34.615 0.00 0.00 0.00 3.32
165 166 7.719633 AGAGTTTTGCTTCCTTCAGTAATACAA 59.280 33.333 0.00 0.00 0.00 2.41
166 167 7.173218 CAGAGTTTTGCTTCCTTCAGTAATACA 59.827 37.037 0.00 0.00 0.00 2.29
167 168 7.522374 CAGAGTTTTGCTTCCTTCAGTAATAC 58.478 38.462 0.00 0.00 0.00 1.89
168 169 6.149474 GCAGAGTTTTGCTTCCTTCAGTAATA 59.851 38.462 0.00 0.00 40.89 0.98
169 170 5.048434 GCAGAGTTTTGCTTCCTTCAGTAAT 60.048 40.000 0.00 0.00 40.89 1.89
170 171 4.275936 GCAGAGTTTTGCTTCCTTCAGTAA 59.724 41.667 0.00 0.00 40.89 2.24
171 172 3.815401 GCAGAGTTTTGCTTCCTTCAGTA 59.185 43.478 0.00 0.00 40.89 2.74
172 173 2.620585 GCAGAGTTTTGCTTCCTTCAGT 59.379 45.455 0.00 0.00 40.89 3.41
195 196 2.415697 AAACTTGTGTTACCATGCGC 57.584 45.000 0.00 0.00 34.96 6.09
233 235 7.721286 TTTCTTTTGACTTTTGAAGCACAAA 57.279 28.000 5.25 5.25 45.22 2.83
242 244 6.581712 TCTTGGGGATTTCTTTTGACTTTTG 58.418 36.000 0.00 0.00 0.00 2.44
247 249 5.791336 AGTTCTTGGGGATTTCTTTTGAC 57.209 39.130 0.00 0.00 0.00 3.18
248 250 6.493458 CCTAAGTTCTTGGGGATTTCTTTTGA 59.507 38.462 7.00 0.00 0.00 2.69
260 262 5.336770 GCCTGATTTTTCCTAAGTTCTTGGG 60.337 44.000 8.37 8.37 0.00 4.12
265 267 7.759886 GGTTATTGCCTGATTTTTCCTAAGTTC 59.240 37.037 0.00 0.00 0.00 3.01
278 280 2.427095 GGCTTTTCGGTTATTGCCTGAT 59.573 45.455 0.00 0.00 37.58 2.90
279 281 1.816224 GGCTTTTCGGTTATTGCCTGA 59.184 47.619 0.00 0.00 37.58 3.86
282 284 2.734276 TTGGCTTTTCGGTTATTGCC 57.266 45.000 0.00 0.00 40.62 4.52
283 285 4.271291 TGTTTTTGGCTTTTCGGTTATTGC 59.729 37.500 0.00 0.00 0.00 3.56
313 316 4.941873 GTGTTCTTCGGGGTTTTAGATGAT 59.058 41.667 0.00 0.00 0.00 2.45
314 317 4.320870 GTGTTCTTCGGGGTTTTAGATGA 58.679 43.478 0.00 0.00 0.00 2.92
315 318 3.124636 CGTGTTCTTCGGGGTTTTAGATG 59.875 47.826 0.00 0.00 0.00 2.90
318 321 2.222445 CACGTGTTCTTCGGGGTTTTAG 59.778 50.000 7.58 0.00 0.00 1.85
326 329 4.468095 AGATTTTTCACGTGTTCTTCGG 57.532 40.909 16.51 0.00 0.00 4.30
327 330 6.362551 TCTCTAGATTTTTCACGTGTTCTTCG 59.637 38.462 16.51 6.64 0.00 3.79
328 331 7.639162 TCTCTAGATTTTTCACGTGTTCTTC 57.361 36.000 16.51 7.67 0.00 2.87
330 333 7.711339 ACTTTCTCTAGATTTTTCACGTGTTCT 59.289 33.333 16.51 12.77 0.00 3.01
331 334 7.794349 CACTTTCTCTAGATTTTTCACGTGTTC 59.206 37.037 16.51 6.31 0.00 3.18
333 336 6.761714 ACACTTTCTCTAGATTTTTCACGTGT 59.238 34.615 16.51 0.00 0.00 4.49
334 337 7.178712 ACACTTTCTCTAGATTTTTCACGTG 57.821 36.000 9.94 9.94 0.00 4.49
335 338 6.424207 GGACACTTTCTCTAGATTTTTCACGT 59.576 38.462 0.00 0.00 0.00 4.49
336 339 6.423905 TGGACACTTTCTCTAGATTTTTCACG 59.576 38.462 0.00 0.00 0.00 4.35
337 340 7.730364 TGGACACTTTCTCTAGATTTTTCAC 57.270 36.000 0.00 0.00 0.00 3.18
338 341 8.210946 TCTTGGACACTTTCTCTAGATTTTTCA 58.789 33.333 0.00 0.00 0.00 2.69
339 342 8.499967 GTCTTGGACACTTTCTCTAGATTTTTC 58.500 37.037 0.00 0.00 32.09 2.29
341 344 6.647067 CGTCTTGGACACTTTCTCTAGATTTT 59.353 38.462 0.00 0.00 32.09 1.82
345 348 3.057456 GCGTCTTGGACACTTTCTCTAGA 60.057 47.826 0.00 0.00 32.09 2.43
346 349 3.246619 GCGTCTTGGACACTTTCTCTAG 58.753 50.000 0.00 0.00 32.09 2.43
349 352 0.784778 CGCGTCTTGGACACTTTCTC 59.215 55.000 0.00 0.00 32.09 2.87
367 370 4.039357 AGTCTCGGCCACGTGTCG 62.039 66.667 15.65 17.30 41.85 4.35
378 381 2.920645 AGTGGTGCGTCCAGTCTCG 61.921 63.158 0.52 0.00 45.98 4.04
385 388 3.660111 GTGCCAAGTGGTGCGTCC 61.660 66.667 0.00 0.00 37.57 4.79
397 400 1.260538 TTTTGCTTGTGGGTGTGCCA 61.261 50.000 0.00 0.00 36.17 4.92
425 428 8.137437 TCTCAAGAAAGAAAACTAATTGGCAAG 58.863 33.333 5.96 0.00 0.00 4.01
494 517 4.320395 AACAAATTGTTACCCCTTCCGGG 61.320 47.826 9.92 0.00 45.15 5.73
495 518 2.521126 ACAAATTGTTACCCCTTCCGG 58.479 47.619 0.00 0.00 0.00 5.14
498 521 5.709966 CAGCTAACAAATTGTTACCCCTTC 58.290 41.667 13.93 1.44 41.45 3.46
519 542 2.234908 ACAAGGCTACAACCTAGAGCAG 59.765 50.000 3.12 0.00 39.93 4.24
526 549 3.787742 AGGTAGTACAAGGCTACAACCT 58.212 45.455 2.06 0.00 43.91 3.50
537 560 5.733620 AAATCAGGACGAAGGTAGTACAA 57.266 39.130 2.06 0.00 0.00 2.41
548 571 3.553828 GGGACCAATAAATCAGGACGA 57.446 47.619 0.00 0.00 0.00 4.20
571 594 9.834628 GAGACCAAAATTTGACATAAAATACGA 57.165 29.630 7.37 0.00 0.00 3.43
660 683 8.619546 TGCATGTCATCGAAAATTACATATTGA 58.380 29.630 0.00 0.00 0.00 2.57
741 764 2.290705 CCTCCGTCCTGGTTTATTGGTT 60.291 50.000 0.00 0.00 39.52 3.67
765 788 2.037902 TGACCATAAACACTTCGCAGGA 59.962 45.455 0.00 0.00 0.00 3.86
766 789 2.422597 TGACCATAAACACTTCGCAGG 58.577 47.619 0.00 0.00 0.00 4.85
767 790 4.481930 TTTGACCATAAACACTTCGCAG 57.518 40.909 0.00 0.00 0.00 5.18
768 791 4.793071 CATTTGACCATAAACACTTCGCA 58.207 39.130 0.00 0.00 0.00 5.10
769 792 3.608073 GCATTTGACCATAAACACTTCGC 59.392 43.478 0.00 0.00 0.00 4.70
814 847 2.139118 GCGGAAGATTCTGATGGTAGC 58.861 52.381 5.58 0.00 35.56 3.58
866 899 0.108019 GGAAGAACCCTCGGTTGTGT 59.892 55.000 0.00 0.00 46.95 3.72
898 931 3.181526 GCTATCCGAAATTATCTGCAGCG 60.182 47.826 9.47 4.65 0.00 5.18
919 952 0.738975 GAAGGGGAGCCGTAAAATGC 59.261 55.000 0.00 0.00 0.00 3.56
1055 1091 2.625639 ACTGAACCTGAAGATGGGAGT 58.374 47.619 0.00 0.00 0.00 3.85
1062 1098 6.433847 TGAAGGATTAACTGAACCTGAAGA 57.566 37.500 0.00 0.00 32.73 2.87
1073 1109 4.240096 CACGTACGGTTGAAGGATTAACT 58.760 43.478 21.06 0.00 0.00 2.24
1121 1157 3.770263 ATCAATGGCAATCACTCGTTG 57.230 42.857 0.00 0.00 0.00 4.10
1122 1158 4.789012 AAATCAATGGCAATCACTCGTT 57.211 36.364 0.00 0.00 0.00 3.85
1172 1216 4.946157 AGAATCACCAATCTTCATGTGGAC 59.054 41.667 6.31 0.00 36.23 4.02
1193 1237 2.277591 GCATGGGGCACTTGCAAGA 61.278 57.895 32.50 9.68 46.36 3.02
1213 1257 2.203470 TTAGGTTTTACCCTTGGGCG 57.797 50.000 5.46 0.00 39.75 6.13
1231 1275 5.939447 ACAAACATGGTCCATGGAAAATTT 58.061 33.333 30.96 20.10 45.16 1.82
1250 1294 6.458232 AAAGCAACACATACAGGTTACAAA 57.542 33.333 0.00 0.00 0.00 2.83
1256 1300 4.681744 CAACAAAAGCAACACATACAGGT 58.318 39.130 0.00 0.00 0.00 4.00
1257 1301 3.490526 GCAACAAAAGCAACACATACAGG 59.509 43.478 0.00 0.00 0.00 4.00
1269 1313 4.032703 TGAAGACTGAAGCAACAAAAGC 57.967 40.909 0.00 0.00 0.00 3.51
1272 1316 5.643379 AAACTGAAGACTGAAGCAACAAA 57.357 34.783 0.00 0.00 0.00 2.83
1276 1321 4.776349 TGGTAAACTGAAGACTGAAGCAA 58.224 39.130 0.00 0.00 0.00 3.91
1299 1344 7.608761 TGGTACATTTTTACCACAAGTATCTCC 59.391 37.037 0.00 0.00 45.52 3.71
1300 1345 8.556213 TGGTACATTTTTACCACAAGTATCTC 57.444 34.615 0.00 0.00 45.52 2.75
1301 1346 7.610305 CCTGGTACATTTTTACCACAAGTATCT 59.390 37.037 0.00 0.00 45.52 1.98
1311 1356 5.221362 ACAAGCAACCTGGTACATTTTTACC 60.221 40.000 0.00 0.00 41.89 2.85
1314 1359 5.351948 AACAAGCAACCTGGTACATTTTT 57.648 34.783 0.00 0.00 38.20 1.94
1403 1450 5.172687 TCAGTGGTATGTTATGGCAGAAA 57.827 39.130 0.00 0.00 0.00 2.52
1410 1457 7.549134 ACACATGTACTTCAGTGGTATGTTATG 59.451 37.037 0.00 0.00 36.35 1.90
1412 1459 6.999950 ACACATGTACTTCAGTGGTATGTTA 58.000 36.000 0.00 0.00 36.35 2.41
1415 1462 5.931724 TCAACACATGTACTTCAGTGGTATG 59.068 40.000 0.00 0.00 36.35 2.39
1416 1463 6.109156 TCAACACATGTACTTCAGTGGTAT 57.891 37.500 0.00 0.00 36.35 2.73
1417 1464 5.538849 TCAACACATGTACTTCAGTGGTA 57.461 39.130 0.00 0.00 36.35 3.25
1418 1465 4.415881 TCAACACATGTACTTCAGTGGT 57.584 40.909 0.00 3.43 36.35 4.16
1424 1471 6.603095 GGACAAAGATCAACACATGTACTTC 58.397 40.000 0.00 0.00 0.00 3.01
1425 1472 5.179368 CGGACAAAGATCAACACATGTACTT 59.821 40.000 0.00 0.00 0.00 2.24
1435 1482 4.213270 TGAACATCACGGACAAAGATCAAC 59.787 41.667 0.00 0.00 0.00 3.18
1438 1485 4.452455 ACTTGAACATCACGGACAAAGATC 59.548 41.667 0.00 0.00 0.00 2.75
1442 1489 3.275143 ACACTTGAACATCACGGACAAA 58.725 40.909 0.00 0.00 0.00 2.83
1443 1490 2.869801 GACACTTGAACATCACGGACAA 59.130 45.455 0.00 0.00 0.00 3.18
1448 1495 2.722706 CGCATGACACTTGAACATCACG 60.723 50.000 0.00 0.00 0.00 4.35
1452 1499 2.183478 TCCGCATGACACTTGAACAT 57.817 45.000 0.00 0.00 0.00 2.71
1453 1500 1.601903 GTTCCGCATGACACTTGAACA 59.398 47.619 0.00 0.00 33.93 3.18
1454 1501 1.069227 GGTTCCGCATGACACTTGAAC 60.069 52.381 0.00 0.00 33.20 3.18
1456 1511 0.396435 AGGTTCCGCATGACACTTGA 59.604 50.000 0.00 0.00 0.00 3.02
1460 1515 0.798776 CTGAAGGTTCCGCATGACAC 59.201 55.000 0.00 0.00 0.00 3.67
1463 1518 2.027285 TGAATCTGAAGGTTCCGCATGA 60.027 45.455 0.00 0.00 0.00 3.07
1464 1519 2.353889 CTGAATCTGAAGGTTCCGCATG 59.646 50.000 0.96 0.00 0.00 4.06
1466 1521 1.623311 TCTGAATCTGAAGGTTCCGCA 59.377 47.619 0.96 0.00 0.00 5.69
1469 1524 4.899502 TGAACTCTGAATCTGAAGGTTCC 58.100 43.478 14.78 3.97 33.11 3.62
1470 1525 5.637387 GTCTGAACTCTGAATCTGAAGGTTC 59.363 44.000 12.22 12.22 34.20 3.62
1481 1536 4.081697 TCAACACAGTGTCTGAACTCTGAA 60.082 41.667 6.67 0.00 45.59 3.02
1487 1542 4.946784 AACTTCAACACAGTGTCTGAAC 57.053 40.909 19.21 0.00 35.18 3.18
1488 1543 5.471797 TGAAAACTTCAACACAGTGTCTGAA 59.528 36.000 20.66 20.66 36.59 3.02
1489 1544 5.000591 TGAAAACTTCAACACAGTGTCTGA 58.999 37.500 6.67 10.13 36.59 3.27
1490 1545 5.122239 TCTGAAAACTTCAACACAGTGTCTG 59.878 40.000 6.67 7.96 39.58 3.51
1491 1546 5.245531 TCTGAAAACTTCAACACAGTGTCT 58.754 37.500 6.67 0.00 39.58 3.41
1492 1547 5.545658 TCTGAAAACTTCAACACAGTGTC 57.454 39.130 6.67 0.00 39.58 3.67
1493 1548 5.957842 TTCTGAAAACTTCAACACAGTGT 57.042 34.783 0.00 0.00 39.58 3.55
1494 1549 7.037797 GTTTTCTGAAAACTTCAACACAGTG 57.962 36.000 29.39 0.00 45.55 3.66
1644 1699 6.338214 TGACAGCTTTAATTTAACATGGCA 57.662 33.333 0.00 0.00 0.00 4.92
1683 1738 7.817418 AACTAGATGTGGACAGCTTTAAAAA 57.183 32.000 2.38 0.00 40.00 1.94
1686 1741 7.039293 TGACTAACTAGATGTGGACAGCTTTAA 60.039 37.037 2.38 0.00 40.00 1.52
1687 1742 6.436218 TGACTAACTAGATGTGGACAGCTTTA 59.564 38.462 2.38 0.00 40.00 1.85
1717 1772 4.036734 TGAAGAGAAATGTCTGCACCAAAC 59.963 41.667 0.00 0.00 32.80 2.93
1718 1773 4.206375 TGAAGAGAAATGTCTGCACCAAA 58.794 39.130 0.00 0.00 32.80 3.28
1722 1777 5.429957 AAGTTGAAGAGAAATGTCTGCAC 57.570 39.130 0.00 0.00 31.22 4.57
1750 1805 9.826574 GTCATTAACCATAGTACAATGTCCTTA 57.173 33.333 0.00 0.00 33.41 2.69
1753 1808 6.759827 ACGTCATTAACCATAGTACAATGTCC 59.240 38.462 0.00 0.00 33.41 4.02
1755 1810 7.924412 CCTACGTCATTAACCATAGTACAATGT 59.076 37.037 0.00 0.00 33.41 2.71
1756 1811 7.384115 CCCTACGTCATTAACCATAGTACAATG 59.616 40.741 0.00 0.00 33.15 2.82
1758 1813 6.683610 GCCCTACGTCATTAACCATAGTACAA 60.684 42.308 0.00 0.00 0.00 2.41
1759 1814 5.221303 GCCCTACGTCATTAACCATAGTACA 60.221 44.000 0.00 0.00 0.00 2.90
1760 1815 5.221303 TGCCCTACGTCATTAACCATAGTAC 60.221 44.000 0.00 0.00 0.00 2.73
1761 1816 4.894705 TGCCCTACGTCATTAACCATAGTA 59.105 41.667 0.00 0.00 0.00 1.82
1762 1817 3.707611 TGCCCTACGTCATTAACCATAGT 59.292 43.478 0.00 0.00 0.00 2.12
1763 1818 4.202223 ACTGCCCTACGTCATTAACCATAG 60.202 45.833 0.00 0.00 0.00 2.23
1764 1819 3.707611 ACTGCCCTACGTCATTAACCATA 59.292 43.478 0.00 0.00 0.00 2.74
1765 1820 2.504175 ACTGCCCTACGTCATTAACCAT 59.496 45.455 0.00 0.00 0.00 3.55
1767 1822 2.685850 ACTGCCCTACGTCATTAACC 57.314 50.000 0.00 0.00 0.00 2.85
1769 1824 4.643463 TCAAAACTGCCCTACGTCATTAA 58.357 39.130 0.00 0.00 0.00 1.40
1770 1825 4.250464 CTCAAAACTGCCCTACGTCATTA 58.750 43.478 0.00 0.00 0.00 1.90
1772 1827 2.038557 ACTCAAAACTGCCCTACGTCAT 59.961 45.455 0.00 0.00 0.00 3.06
1773 1828 1.414919 ACTCAAAACTGCCCTACGTCA 59.585 47.619 0.00 0.00 0.00 4.35
1774 1829 1.798813 CACTCAAAACTGCCCTACGTC 59.201 52.381 0.00 0.00 0.00 4.34
1775 1830 1.542547 CCACTCAAAACTGCCCTACGT 60.543 52.381 0.00 0.00 0.00 3.57
1776 1831 1.156736 CCACTCAAAACTGCCCTACG 58.843 55.000 0.00 0.00 0.00 3.51
1777 1832 2.152016 GACCACTCAAAACTGCCCTAC 58.848 52.381 0.00 0.00 0.00 3.18
1778 1833 2.054799 AGACCACTCAAAACTGCCCTA 58.945 47.619 0.00 0.00 0.00 3.53
1779 1834 0.846693 AGACCACTCAAAACTGCCCT 59.153 50.000 0.00 0.00 0.00 5.19
1780 1835 1.338020 CAAGACCACTCAAAACTGCCC 59.662 52.381 0.00 0.00 0.00 5.36
1781 1836 2.033424 GTCAAGACCACTCAAAACTGCC 59.967 50.000 0.00 0.00 0.00 4.85
1782 1837 2.945668 AGTCAAGACCACTCAAAACTGC 59.054 45.455 0.00 0.00 0.00 4.40
1783 1838 4.191544 TGAGTCAAGACCACTCAAAACTG 58.808 43.478 0.00 0.00 45.84 3.16
1784 1839 4.487714 TGAGTCAAGACCACTCAAAACT 57.512 40.909 0.00 0.00 45.84 2.66
1827 1882 3.515630 CAGCTCGATTCTTAACTGCAGA 58.484 45.455 23.35 0.00 0.00 4.26
1935 1990 8.344939 AGGTTAATGAATCAATACCTCCCTTA 57.655 34.615 8.03 0.00 0.00 2.69
1947 2002 7.508977 GGAAATGGGGATTAGGTTAATGAATCA 59.491 37.037 8.38 0.00 32.30 2.57
1948 2003 7.730332 AGGAAATGGGGATTAGGTTAATGAATC 59.270 37.037 0.00 0.00 0.00 2.52
1949 2004 7.604722 AGGAAATGGGGATTAGGTTAATGAAT 58.395 34.615 0.00 0.00 0.00 2.57
1950 2005 6.992235 AGGAAATGGGGATTAGGTTAATGAA 58.008 36.000 0.00 0.00 0.00 2.57
1951 2006 6.606241 AGGAAATGGGGATTAGGTTAATGA 57.394 37.500 0.00 0.00 0.00 2.57
1952 2007 6.462909 GCAAGGAAATGGGGATTAGGTTAATG 60.463 42.308 0.00 0.00 0.00 1.90
1953 2008 5.602561 GCAAGGAAATGGGGATTAGGTTAAT 59.397 40.000 0.00 0.00 0.00 1.40
1954 2009 4.959839 GCAAGGAAATGGGGATTAGGTTAA 59.040 41.667 0.00 0.00 0.00 2.01
1955 2010 4.017037 TGCAAGGAAATGGGGATTAGGTTA 60.017 41.667 0.00 0.00 0.00 2.85
1956 2011 3.245948 TGCAAGGAAATGGGGATTAGGTT 60.246 43.478 0.00 0.00 0.00 3.50
1957 2012 2.314549 TGCAAGGAAATGGGGATTAGGT 59.685 45.455 0.00 0.00 0.00 3.08
1958 2013 3.030873 TGCAAGGAAATGGGGATTAGG 57.969 47.619 0.00 0.00 0.00 2.69
1959 2014 4.280819 TCTTGCAAGGAAATGGGGATTAG 58.719 43.478 25.73 0.00 0.00 1.73
1991 2046 8.635328 TGACTTGATGCAAGCAATCAAATATAT 58.365 29.630 15.48 0.00 43.65 0.86
1992 2047 7.998580 TGACTTGATGCAAGCAATCAAATATA 58.001 30.769 15.48 5.79 43.65 0.86
1993 2048 6.869695 TGACTTGATGCAAGCAATCAAATAT 58.130 32.000 15.48 8.41 43.65 1.28
1994 2049 6.270156 TGACTTGATGCAAGCAATCAAATA 57.730 33.333 15.48 7.12 43.65 1.40
1995 2050 5.142061 TGACTTGATGCAAGCAATCAAAT 57.858 34.783 15.48 9.55 43.65 2.32
1997 2052 4.794278 ATGACTTGATGCAAGCAATCAA 57.206 36.364 7.06 14.54 43.65 2.57
1999 2054 4.740268 TCAATGACTTGATGCAAGCAATC 58.260 39.130 7.06 6.87 43.65 2.67
2000 2055 4.794278 TCAATGACTTGATGCAAGCAAT 57.206 36.364 7.06 0.00 43.65 3.56
2038 2093 7.437267 CAGATATCCATGAAGAAAAATGGCAAC 59.563 37.037 0.00 0.00 42.67 4.17
2122 2177 2.611224 GGAAAAGCTCCCACATTGCAAG 60.611 50.000 4.94 0.00 38.44 4.01
2133 2188 1.045407 AAAAACCGGGGAAAAGCTCC 58.955 50.000 6.32 0.00 44.54 4.70
2134 2189 1.411246 ACAAAAACCGGGGAAAAGCTC 59.589 47.619 6.32 0.00 0.00 4.09
2135 2190 1.411246 GACAAAAACCGGGGAAAAGCT 59.589 47.619 6.32 0.00 0.00 3.74
2136 2191 1.539496 GGACAAAAACCGGGGAAAAGC 60.539 52.381 6.32 0.00 0.00 3.51
2137 2192 1.269361 CGGACAAAAACCGGGGAAAAG 60.269 52.381 6.32 0.00 45.65 2.27
2138 2193 0.745468 CGGACAAAAACCGGGGAAAA 59.255 50.000 6.32 0.00 45.65 2.29
2139 2194 2.416901 CGGACAAAAACCGGGGAAA 58.583 52.632 6.32 0.00 45.65 3.13
2140 2195 4.160928 CGGACAAAAACCGGGGAA 57.839 55.556 6.32 0.00 45.65 3.97
2147 2202 1.598676 GGCGGAGTTTCGGACAAAAAC 60.599 52.381 0.00 0.00 36.97 2.43
2152 2207 3.154584 AACGGCGGAGTTTCGGACA 62.155 57.895 13.24 0.00 0.00 4.02
2156 2211 1.500512 TTTGGAACGGCGGAGTTTCG 61.501 55.000 13.24 0.00 32.35 3.46
2161 2216 2.406616 CCCATTTGGAACGGCGGAG 61.407 63.158 13.24 0.00 37.39 4.63
2189 2244 8.668394 AATGCAATTAAAAGTGGCAACCCCAT 62.668 38.462 0.00 0.00 39.84 4.00
2224 2284 3.715628 AAGCATGCGTGAAAGAAAAGT 57.284 38.095 13.01 0.00 0.00 2.66
2241 2301 4.617959 GGTTAACAACCCTCTTGAAAAGC 58.382 43.478 8.10 0.00 44.39 3.51
2282 2342 5.886992 AGGACGGTGTTTTAAAAGACTTTG 58.113 37.500 22.92 16.55 33.17 2.77
2375 2439 2.227865 TGAAAATTCAGCCGGTAACAGC 59.772 45.455 1.90 0.00 41.61 4.40
2388 2452 4.048504 CCCACACTTTCGGTTGAAAATTC 58.951 43.478 0.00 0.00 43.21 2.17
2428 2492 2.743664 CCGTGTCATCTCTTGATTGCAA 59.256 45.455 0.00 0.00 36.54 4.08
2473 2537 1.463831 GACAGCAGTGCAGACTTGATG 59.536 52.381 19.20 6.53 0.00 3.07
2519 2583 0.039437 TTCAGAAGCCGTCGTCAGTC 60.039 55.000 0.00 0.00 0.00 3.51
2529 2593 2.237392 ACAGTACAGGGATTCAGAAGCC 59.763 50.000 9.14 9.14 35.82 4.35
2631 2695 1.735198 GAAATCGCCGACGGTGACA 60.735 57.895 31.06 11.88 45.43 3.58
2673 2737 8.446599 TTGGCTAGCCTGTTCTAATTTTATAC 57.553 34.615 33.07 1.68 36.94 1.47
2690 2754 4.925646 CCAAAAAGTCAAAGATTGGCTAGC 59.074 41.667 6.04 6.04 46.66 3.42
2722 2786 1.234615 GCAAGGCCAGCGTCAGTTTA 61.235 55.000 5.01 0.00 0.00 2.01
2723 2787 2.555547 GCAAGGCCAGCGTCAGTTT 61.556 57.895 5.01 0.00 0.00 2.66
2791 2855 1.216710 CTCCAGGTCGCCTTCTGAC 59.783 63.158 0.00 0.00 33.11 3.51
2794 2858 3.701454 GACTCCAGGTCGCCTTCT 58.299 61.111 0.00 0.00 35.07 2.85
2854 2918 2.057408 AGGCTCCTTCTCCAGCTCG 61.057 63.158 0.00 0.00 35.82 5.03
2878 2942 2.926200 CTCGATATCAATGGCGTCATCC 59.074 50.000 1.37 0.00 32.24 3.51
2896 2960 0.312416 CCTTGGAGTCCGATAGCTCG 59.688 60.000 4.30 0.00 44.62 5.03
2902 2966 2.722201 GGCGTCCTTGGAGTCCGAT 61.722 63.158 4.30 0.00 0.00 4.18
2905 2969 4.097361 GGGGCGTCCTTGGAGTCC 62.097 72.222 5.77 0.73 0.00 3.85
2920 2984 1.374758 GGACTGCTTCACGTCAGGG 60.375 63.158 6.89 0.00 34.76 4.45
2930 2994 0.894184 TCTTCGGAGTCGGACTGCTT 60.894 55.000 24.22 0.00 34.11 3.91
2931 2995 1.303398 TCTTCGGAGTCGGACTGCT 60.303 57.895 24.22 0.00 34.11 4.24
2944 3008 0.179124 CCTCTTCGGAAGGCTCTTCG 60.179 60.000 17.19 0.00 33.16 3.79
2969 3033 2.043227 GAAGTATCAGGTGGAGGAGGG 58.957 57.143 0.00 0.00 0.00 4.30
3023 3087 5.618056 TTCTGAATCTGAAGCACATTCAC 57.382 39.130 0.00 0.00 43.09 3.18
3034 3098 6.228995 CCTGCTAATGCTATTCTGAATCTGA 58.771 40.000 6.10 0.00 40.48 3.27
3125 3190 1.261619 GTTCAGTGCTGCTACACACAC 59.738 52.381 11.44 0.00 43.23 3.82
3173 3254 2.123428 GCTGTCATCATGGGCCCAC 61.123 63.158 31.51 14.57 0.00 4.61
3230 3311 2.636830 CTGCAGACAAACTGGATAGGG 58.363 52.381 8.42 0.00 45.30 3.53
3263 3344 3.056313 GAAGCCGAAGCCATGGTGC 62.056 63.158 14.67 8.74 41.25 5.01
3307 3388 4.394712 GTGGAGTGGAGCACCCCG 62.395 72.222 0.00 0.00 34.88 5.73
3345 3427 3.264052 TGGTGATGTGGGGTGGGG 61.264 66.667 0.00 0.00 0.00 4.96
3349 3431 1.761174 GTCACTGGTGATGTGGGGT 59.239 57.895 6.71 0.00 42.18 4.95
3351 3433 1.208052 CTAGGTCACTGGTGATGTGGG 59.792 57.143 6.71 0.00 42.18 4.61
3353 3435 3.119101 GGTACTAGGTCACTGGTGATGTG 60.119 52.174 6.71 0.00 42.18 3.21
3354 3436 3.097614 GGTACTAGGTCACTGGTGATGT 58.902 50.000 6.71 6.75 42.18 3.06
3423 3506 6.362283 GGTTGGAAGAACAATGTATTTCGTTG 59.638 38.462 0.00 0.00 45.51 4.10
3438 3521 5.773176 GGAAAACAAGATAGGGTTGGAAGAA 59.227 40.000 0.00 0.00 0.00 2.52
3440 3523 4.462834 GGGAAAACAAGATAGGGTTGGAAG 59.537 45.833 0.00 0.00 0.00 3.46
3461 3544 2.186903 CACGGGATCGGAGTTGGG 59.813 66.667 0.00 0.00 41.39 4.12
3514 3597 2.430921 CGGTCGCGTCAAGAAGCT 60.431 61.111 5.77 0.00 33.62 3.74
3536 3619 1.736126 CACAAATCTCAGCAGCATCGT 59.264 47.619 0.00 0.00 0.00 3.73
3540 3623 1.162698 GAGCACAAATCTCAGCAGCA 58.837 50.000 0.00 0.00 0.00 4.41
3541 3624 0.450983 GGAGCACAAATCTCAGCAGC 59.549 55.000 0.00 0.00 32.38 5.25
3542 3625 2.110901 AGGAGCACAAATCTCAGCAG 57.889 50.000 0.00 0.00 32.38 4.24
3567 3650 9.807921 ACTAACCTAATCCTTTGAATTTTCTGA 57.192 29.630 0.00 0.00 0.00 3.27
3580 3663 5.216622 TGATGCACCTACTAACCTAATCCT 58.783 41.667 0.00 0.00 0.00 3.24
3603 3686 6.178324 CCACTCATATCCATTATCATGCACT 58.822 40.000 0.00 0.00 0.00 4.40
3616 3699 6.653020 TGGTATAATGATGCCACTCATATCC 58.347 40.000 0.00 0.00 42.37 2.59
3622 3705 5.239525 GGTTTCTGGTATAATGATGCCACTC 59.760 44.000 0.00 0.00 42.37 3.51
3623 3706 5.133221 GGTTTCTGGTATAATGATGCCACT 58.867 41.667 0.00 0.00 42.37 4.00
3626 3709 4.520492 CCTGGTTTCTGGTATAATGATGCC 59.480 45.833 0.00 0.00 38.28 4.40
3678 3764 1.672881 CGAAATCATTCCAGGTCCTGC 59.327 52.381 13.99 0.00 31.52 4.85
3697 3783 1.823899 GGAATAAGGTGGCTGCCCG 60.824 63.158 17.53 0.00 0.00 6.13
3766 3856 2.396590 ATGCGACCACCTAACGATTT 57.603 45.000 0.00 0.00 0.00 2.17
3767 3857 2.223971 CCTATGCGACCACCTAACGATT 60.224 50.000 0.00 0.00 0.00 3.34
3768 3858 1.340248 CCTATGCGACCACCTAACGAT 59.660 52.381 0.00 0.00 0.00 3.73
3770 3860 0.874607 GCCTATGCGACCACCTAACG 60.875 60.000 0.00 0.00 0.00 3.18
3779 3869 1.137086 TCTTGAGAAGGCCTATGCGAC 59.863 52.381 5.16 0.00 38.85 5.19
3780 3870 1.485124 TCTTGAGAAGGCCTATGCGA 58.515 50.000 5.16 0.00 38.85 5.10
3790 3880 4.632538 ACGTTGGGTTTTTCTTGAGAAG 57.367 40.909 0.00 0.00 35.21 2.85
3794 3884 7.513371 AATATGTACGTTGGGTTTTTCTTGA 57.487 32.000 0.00 0.00 0.00 3.02
3827 3917 0.464554 GGTGTCTGGGCTAGAATGGC 60.465 60.000 0.71 0.00 44.56 4.40
3887 3984 4.761739 TCCACAGTGTTCCAAGATTTCATC 59.238 41.667 0.00 0.00 0.00 2.92
3904 4001 7.012704 TGAGAAAAGTTTCTTCTGAATCCACAG 59.987 37.037 7.69 0.00 46.84 3.66
3917 4014 9.830370 CGTTGCCGATGAATGAGAAAAGTTTCT 62.830 40.741 6.00 6.00 42.70 2.52
3918 4015 5.046910 TGCCGATGAATGAGAAAAGTTTC 57.953 39.130 0.00 0.00 37.45 2.78
3930 4027 2.581208 TACCGCCGTTGCCGATGAAT 62.581 55.000 0.00 0.00 35.63 2.57
3942 4039 3.255725 TGTGTTAGAAATTCTACCGCCG 58.744 45.455 8.32 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.