Multiple sequence alignment - TraesCS3A01G399300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G399300 chr3A 100.000 2204 0 0 1 2204 646275714 646277917 0.000000e+00 4071.0
1 TraesCS3A01G399300 chr3A 94.024 820 41 5 1 817 51409496 51410310 0.000000e+00 1236.0
2 TraesCS3A01G399300 chr3A 94.565 368 15 3 1838 2204 53330706 53330343 4.110000e-157 564.0
3 TraesCS3A01G399300 chr3A 89.899 297 24 2 1543 1838 291788647 291788356 5.740000e-101 377.0
4 TraesCS3A01G399300 chr2A 98.654 817 11 0 1 817 33690022 33689206 0.000000e+00 1448.0
5 TraesCS3A01G399300 chr2A 98.046 819 14 2 1 817 60281970 60281152 0.000000e+00 1423.0
6 TraesCS3A01G399300 chr2A 90.476 294 26 2 1546 1838 118447791 118447499 9.540000e-104 387.0
7 TraesCS3A01G399300 chr4A 97.311 818 21 1 1 817 487884083 487883266 0.000000e+00 1387.0
8 TraesCS3A01G399300 chr4A 89.899 297 24 3 1543 1838 514634712 514634421 5.740000e-101 377.0
9 TraesCS3A01G399300 chr4A 90.341 176 14 1 2010 2182 502167803 502167628 6.120000e-56 228.0
10 TraesCS3A01G399300 chr4A 88.312 77 9 0 1259 1335 595655168 595655244 2.330000e-15 93.5
11 TraesCS3A01G399300 chr2B 95.116 819 33 5 1 817 215942648 215941835 0.000000e+00 1284.0
12 TraesCS3A01G399300 chr2B 95.821 335 13 1 483 817 254292715 254293048 6.920000e-150 540.0
13 TraesCS3A01G399300 chr2B 92.857 238 13 3 1 238 254291485 254291718 2.100000e-90 342.0
14 TraesCS3A01G399300 chr3B 94.189 826 34 7 1 817 94872937 94872117 0.000000e+00 1247.0
15 TraesCS3A01G399300 chr3B 88.552 594 63 5 943 1534 671485011 671485601 0.000000e+00 715.0
16 TraesCS3A01G399300 chr3B 85.459 447 38 14 822 1249 671334483 671334921 7.220000e-120 440.0
17 TraesCS3A01G399300 chr3B 91.968 249 20 0 1838 2086 758410124 758409876 1.250000e-92 350.0
18 TraesCS3A01G399300 chr3B 97.037 135 1 1 2073 2204 758408172 758408038 7.920000e-55 224.0
19 TraesCS3A01G399300 chr7B 93.505 816 45 5 1 814 477426261 477425452 0.000000e+00 1206.0
20 TraesCS3A01G399300 chr3D 86.775 431 34 15 818 1244 508432191 508432602 1.990000e-125 459.0
21 TraesCS3A01G399300 chr3D 87.017 362 38 7 1851 2204 20541710 20542070 1.230000e-107 399.0
22 TraesCS3A01G399300 chr3D 84.048 420 41 7 999 1418 508467404 508467797 4.440000e-102 381.0
23 TraesCS3A01G399300 chr3D 92.248 129 8 2 1407 1534 508469227 508469354 4.830000e-42 182.0
24 TraesCS3A01G399300 chr1A 90.301 299 22 4 1542 1838 350489901 350489608 3.430000e-103 385.0
25 TraesCS3A01G399300 chr6B 90.268 298 22 4 1543 1838 580307641 580307933 1.230000e-102 383.0
26 TraesCS3A01G399300 chr5B 90.476 294 23 3 1546 1838 416592180 416591891 1.230000e-102 383.0
27 TraesCS3A01G399300 chr5A 90.203 296 23 3 1544 1838 630124088 630123798 4.440000e-102 381.0
28 TraesCS3A01G399300 chr5A 89.899 297 25 2 1543 1838 366030495 366030787 5.740000e-101 377.0
29 TraesCS3A01G399300 chr7A 90.136 294 24 2 1546 1838 230300941 230300652 5.740000e-101 377.0
30 TraesCS3A01G399300 chr4B 80.864 324 47 8 508 817 76636131 76636453 7.860000e-60 241.0
31 TraesCS3A01G399300 chr4B 89.041 73 8 0 1259 1331 617394181 617394253 8.380000e-15 91.6
32 TraesCS3A01G399300 chr4D 88.158 76 9 0 1259 1334 472429981 472429906 8.380000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G399300 chr3A 646275714 646277917 2203 False 4071.0 4071 100.0000 1 2204 1 chr3A.!!$F2 2203
1 TraesCS3A01G399300 chr3A 51409496 51410310 814 False 1236.0 1236 94.0240 1 817 1 chr3A.!!$F1 816
2 TraesCS3A01G399300 chr2A 33689206 33690022 816 True 1448.0 1448 98.6540 1 817 1 chr2A.!!$R1 816
3 TraesCS3A01G399300 chr2A 60281152 60281970 818 True 1423.0 1423 98.0460 1 817 1 chr2A.!!$R2 816
4 TraesCS3A01G399300 chr4A 487883266 487884083 817 True 1387.0 1387 97.3110 1 817 1 chr4A.!!$R1 816
5 TraesCS3A01G399300 chr2B 215941835 215942648 813 True 1284.0 1284 95.1160 1 817 1 chr2B.!!$R1 816
6 TraesCS3A01G399300 chr2B 254291485 254293048 1563 False 441.0 540 94.3390 1 817 2 chr2B.!!$F1 816
7 TraesCS3A01G399300 chr3B 94872117 94872937 820 True 1247.0 1247 94.1890 1 817 1 chr3B.!!$R1 816
8 TraesCS3A01G399300 chr3B 671485011 671485601 590 False 715.0 715 88.5520 943 1534 1 chr3B.!!$F2 591
9 TraesCS3A01G399300 chr3B 758408038 758410124 2086 True 287.0 350 94.5025 1838 2204 2 chr3B.!!$R2 366
10 TraesCS3A01G399300 chr7B 477425452 477426261 809 True 1206.0 1206 93.5050 1 814 1 chr7B.!!$R1 813
11 TraesCS3A01G399300 chr3D 508467404 508469354 1950 False 281.5 381 88.1480 999 1534 2 chr3D.!!$F3 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 1675 0.03563 AGCACCAGACTGCAATCTCC 60.036 55.0 0.0 0.0 39.86 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 4267 0.249911 GGAGAGGTTGCGTGTGACTT 60.25 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
322 335 0.433492 CTACACTTGCGTACGTGCAC 59.567 55.000 17.90 6.82 46.25 4.57
329 342 0.810426 TGCGTACGTGCACCTTCAAA 60.810 50.000 17.90 0.00 40.62 2.69
383 676 2.270434 AGTTAGGATCTTGGGGCAGA 57.730 50.000 0.00 0.00 0.00 4.26
669 1453 2.028020 AGTAGCAGGTGAACCTAGTTGC 60.028 50.000 0.62 2.51 46.65 4.17
821 1610 4.799715 TTTTTCAGACTTTACTCCCCCA 57.200 40.909 0.00 0.00 0.00 4.96
822 1611 5.333566 TTTTTCAGACTTTACTCCCCCAT 57.666 39.130 0.00 0.00 0.00 4.00
823 1612 6.457159 TTTTTCAGACTTTACTCCCCCATA 57.543 37.500 0.00 0.00 0.00 2.74
824 1613 6.652205 TTTTCAGACTTTACTCCCCCATAT 57.348 37.500 0.00 0.00 0.00 1.78
825 1614 7.758820 TTTTCAGACTTTACTCCCCCATATA 57.241 36.000 0.00 0.00 0.00 0.86
826 1615 7.947782 TTTCAGACTTTACTCCCCCATATAT 57.052 36.000 0.00 0.00 0.00 0.86
827 1616 9.455144 TTTTCAGACTTTACTCCCCCATATATA 57.545 33.333 0.00 0.00 0.00 0.86
828 1617 8.431910 TTCAGACTTTACTCCCCCATATATAC 57.568 38.462 0.00 0.00 0.00 1.47
829 1618 7.541074 TCAGACTTTACTCCCCCATATATACA 58.459 38.462 0.00 0.00 0.00 2.29
830 1619 7.453752 TCAGACTTTACTCCCCCATATATACAC 59.546 40.741 0.00 0.00 0.00 2.90
831 1620 7.234782 CAGACTTTACTCCCCCATATATACACA 59.765 40.741 0.00 0.00 0.00 3.72
832 1621 7.234988 AGACTTTACTCCCCCATATATACACAC 59.765 40.741 0.00 0.00 0.00 3.82
833 1622 6.847567 ACTTTACTCCCCCATATATACACACA 59.152 38.462 0.00 0.00 0.00 3.72
834 1623 7.516209 ACTTTACTCCCCCATATATACACACAT 59.484 37.037 0.00 0.00 0.00 3.21
835 1624 7.490657 TTACTCCCCCATATATACACACATC 57.509 40.000 0.00 0.00 0.00 3.06
836 1625 5.411493 ACTCCCCCATATATACACACATCA 58.589 41.667 0.00 0.00 0.00 3.07
837 1626 5.485353 ACTCCCCCATATATACACACATCAG 59.515 44.000 0.00 0.00 0.00 2.90
838 1627 5.660533 TCCCCCATATATACACACATCAGA 58.339 41.667 0.00 0.00 0.00 3.27
839 1628 6.271537 TCCCCCATATATACACACATCAGAT 58.728 40.000 0.00 0.00 0.00 2.90
840 1629 6.156775 TCCCCCATATATACACACATCAGATG 59.843 42.308 9.03 9.03 0.00 2.90
841 1630 6.156775 CCCCCATATATACACACATCAGATGA 59.843 42.308 17.81 0.00 0.00 2.92
842 1631 7.044181 CCCCATATATACACACATCAGATGAC 58.956 42.308 17.81 0.00 0.00 3.06
843 1632 7.093156 CCCCATATATACACACATCAGATGACT 60.093 40.741 17.81 0.00 0.00 3.41
844 1633 7.978414 CCCATATATACACACATCAGATGACTC 59.022 40.741 17.81 0.00 0.00 3.36
845 1634 8.526147 CCATATATACACACATCAGATGACTCA 58.474 37.037 17.81 0.00 0.00 3.41
846 1635 9.351570 CATATATACACACATCAGATGACTCAC 57.648 37.037 17.81 0.00 0.00 3.51
847 1636 5.665916 ATACACACATCAGATGACTCACA 57.334 39.130 17.81 0.00 0.00 3.58
848 1637 3.657634 ACACACATCAGATGACTCACAC 58.342 45.455 17.81 0.00 0.00 3.82
849 1638 3.070015 ACACACATCAGATGACTCACACA 59.930 43.478 17.81 0.00 0.00 3.72
850 1639 4.060205 CACACATCAGATGACTCACACAA 58.940 43.478 17.81 0.00 0.00 3.33
851 1640 4.151867 CACACATCAGATGACTCACACAAG 59.848 45.833 17.81 0.00 0.00 3.16
852 1641 4.202295 ACACATCAGATGACTCACACAAGT 60.202 41.667 17.81 0.00 0.00 3.16
854 1643 3.391506 TCAGATGACTCACACAAGTGG 57.608 47.619 5.08 0.00 45.91 4.00
855 1644 2.700371 TCAGATGACTCACACAAGTGGT 59.300 45.455 5.08 0.00 45.91 4.16
871 1660 4.285851 GTGGACTAGCACCAGCAC 57.714 61.111 9.15 0.00 45.49 4.40
872 1661 1.376037 GTGGACTAGCACCAGCACC 60.376 63.158 9.15 0.00 45.49 5.01
873 1662 1.841103 TGGACTAGCACCAGCACCA 60.841 57.895 5.31 0.00 45.49 4.17
874 1663 1.078848 GGACTAGCACCAGCACCAG 60.079 63.158 0.00 0.00 45.49 4.00
875 1664 1.544825 GGACTAGCACCAGCACCAGA 61.545 60.000 0.00 0.00 45.49 3.86
876 1665 0.390472 GACTAGCACCAGCACCAGAC 60.390 60.000 0.00 0.00 45.49 3.51
877 1666 0.833834 ACTAGCACCAGCACCAGACT 60.834 55.000 0.00 0.00 45.49 3.24
878 1667 0.390866 CTAGCACCAGCACCAGACTG 60.391 60.000 0.00 0.00 45.49 3.51
879 1668 2.454832 TAGCACCAGCACCAGACTGC 62.455 60.000 0.00 0.00 45.49 4.40
880 1669 2.111669 CACCAGCACCAGACTGCA 59.888 61.111 0.00 0.00 39.86 4.41
881 1670 1.526686 CACCAGCACCAGACTGCAA 60.527 57.895 0.00 0.00 39.86 4.08
882 1671 0.892358 CACCAGCACCAGACTGCAAT 60.892 55.000 0.00 0.00 39.86 3.56
883 1672 0.607489 ACCAGCACCAGACTGCAATC 60.607 55.000 0.00 0.00 39.86 2.67
884 1673 0.322277 CCAGCACCAGACTGCAATCT 60.322 55.000 0.00 0.00 39.86 2.40
885 1674 1.085091 CAGCACCAGACTGCAATCTC 58.915 55.000 0.00 0.00 39.86 2.75
886 1675 0.035630 AGCACCAGACTGCAATCTCC 60.036 55.000 0.00 0.00 39.86 3.71
887 1676 0.321919 GCACCAGACTGCAATCTCCA 60.322 55.000 0.00 0.00 37.11 3.86
888 1677 1.446907 CACCAGACTGCAATCTCCAC 58.553 55.000 0.00 0.00 0.00 4.02
889 1678 1.059098 ACCAGACTGCAATCTCCACA 58.941 50.000 0.00 0.00 0.00 4.17
890 1679 1.271054 ACCAGACTGCAATCTCCACAC 60.271 52.381 0.00 0.00 0.00 3.82
891 1680 1.446907 CAGACTGCAATCTCCACACC 58.553 55.000 0.00 0.00 0.00 4.16
892 1681 0.326264 AGACTGCAATCTCCACACCC 59.674 55.000 0.00 0.00 0.00 4.61
893 1682 0.036732 GACTGCAATCTCCACACCCA 59.963 55.000 0.00 0.00 0.00 4.51
894 1683 0.037303 ACTGCAATCTCCACACCCAG 59.963 55.000 0.00 0.00 0.00 4.45
895 1684 0.325933 CTGCAATCTCCACACCCAGA 59.674 55.000 0.00 0.00 0.00 3.86
896 1685 0.770499 TGCAATCTCCACACCCAGAA 59.230 50.000 0.00 0.00 0.00 3.02
897 1686 1.168714 GCAATCTCCACACCCAGAAC 58.831 55.000 0.00 0.00 0.00 3.01
898 1687 1.826385 CAATCTCCACACCCAGAACC 58.174 55.000 0.00 0.00 0.00 3.62
899 1688 1.073763 CAATCTCCACACCCAGAACCA 59.926 52.381 0.00 0.00 0.00 3.67
900 1689 0.987294 ATCTCCACACCCAGAACCAG 59.013 55.000 0.00 0.00 0.00 4.00
901 1690 1.127567 TCTCCACACCCAGAACCAGG 61.128 60.000 0.00 0.00 0.00 4.45
902 1691 2.282462 CCACACCCAGAACCAGGC 60.282 66.667 0.00 0.00 0.00 4.85
903 1692 2.669569 CACACCCAGAACCAGGCG 60.670 66.667 0.00 0.00 0.00 5.52
904 1693 2.847234 ACACCCAGAACCAGGCGA 60.847 61.111 0.00 0.00 0.00 5.54
905 1694 2.224159 ACACCCAGAACCAGGCGAT 61.224 57.895 0.00 0.00 0.00 4.58
906 1695 1.002134 CACCCAGAACCAGGCGATT 60.002 57.895 0.00 0.00 0.00 3.34
907 1696 1.026718 CACCCAGAACCAGGCGATTC 61.027 60.000 0.00 0.00 0.00 2.52
908 1697 1.452108 CCCAGAACCAGGCGATTCC 60.452 63.158 0.00 0.00 0.00 3.01
909 1698 1.815421 CCAGAACCAGGCGATTCCG 60.815 63.158 0.00 0.00 40.77 4.30
910 1699 1.815421 CAGAACCAGGCGATTCCGG 60.815 63.158 0.00 0.00 40.77 5.14
915 1704 2.107141 CAGGCGATTCCGGGAGAC 59.893 66.667 0.00 0.00 40.77 3.36
916 1705 2.363795 AGGCGATTCCGGGAGACA 60.364 61.111 0.00 0.00 40.77 3.41
917 1706 2.202892 GGCGATTCCGGGAGACAC 60.203 66.667 0.00 0.00 36.06 3.67
918 1707 2.202892 GCGATTCCGGGAGACACC 60.203 66.667 0.00 0.00 36.06 4.16
919 1708 2.722201 GCGATTCCGGGAGACACCT 61.722 63.158 0.00 0.00 38.98 4.00
920 1709 1.141881 CGATTCCGGGAGACACCTG 59.858 63.158 0.00 0.00 44.27 4.00
921 1710 1.153349 GATTCCGGGAGACACCTGC 60.153 63.158 0.00 0.00 43.37 4.85
922 1711 2.907897 GATTCCGGGAGACACCTGCG 62.908 65.000 0.00 0.00 43.37 5.18
923 1712 4.988716 TCCGGGAGACACCTGCGT 62.989 66.667 0.00 0.00 43.37 5.24
924 1713 4.742201 CCGGGAGACACCTGCGTG 62.742 72.222 0.00 0.00 46.11 5.34
926 1715 4.314440 GGGAGACACCTGCGTGCA 62.314 66.667 0.00 0.00 44.40 4.57
927 1716 2.046892 GGAGACACCTGCGTGCAT 60.047 61.111 0.00 0.00 44.40 3.96
928 1717 2.393768 GGAGACACCTGCGTGCATG 61.394 63.158 0.09 0.09 44.40 4.06
929 1718 3.031964 GAGACACCTGCGTGCATGC 62.032 63.158 24.20 24.20 44.40 4.06
930 1719 4.450122 GACACCTGCGTGCATGCG 62.450 66.667 25.05 18.70 44.40 4.73
932 1721 4.746951 CACCTGCGTGCATGCGTG 62.747 66.667 25.05 22.19 37.81 5.34
942 1731 4.185413 CATGCGTGCTCCGTAAGT 57.815 55.556 0.00 0.00 39.32 2.24
943 1732 1.999051 CATGCGTGCTCCGTAAGTC 59.001 57.895 0.00 0.00 39.32 3.01
944 1733 1.153628 ATGCGTGCTCCGTAAGTCC 60.154 57.895 0.00 0.00 39.32 3.85
945 1734 2.879462 GCGTGCTCCGTAAGTCCG 60.879 66.667 0.00 0.00 39.32 4.79
949 1738 1.089920 GTGCTCCGTAAGTCCGTAGA 58.910 55.000 0.00 0.00 0.00 2.59
951 1740 1.339438 TGCTCCGTAAGTCCGTAGAGT 60.339 52.381 0.00 0.00 0.00 3.24
970 1759 5.200483 AGAGTTTTCAGAGGATCGAGATCT 58.800 41.667 12.22 0.00 42.67 2.75
971 1760 5.299279 AGAGTTTTCAGAGGATCGAGATCTC 59.701 44.000 13.05 13.05 42.67 2.75
978 1767 0.316841 GGATCGAGATCTCAGGGCAC 59.683 60.000 22.31 7.07 37.92 5.01
981 1770 1.064946 CGAGATCTCAGGGCACGTC 59.935 63.158 22.31 0.00 0.00 4.34
990 1780 1.600916 AGGGCACGTCCTTTGCTTC 60.601 57.895 0.00 0.00 40.07 3.86
993 1783 0.040067 GGCACGTCCTTTGCTTCTTG 60.040 55.000 0.00 0.00 40.07 3.02
995 1785 1.593196 CACGTCCTTTGCTTCTTGGA 58.407 50.000 0.00 0.00 0.00 3.53
1007 1797 0.960364 TTCTTGGAAGCCATGGACGC 60.960 55.000 18.40 0.00 31.53 5.19
1026 1816 2.388232 CCACCGTAACCGCAGCTTC 61.388 63.158 0.00 0.00 0.00 3.86
1027 1817 1.374252 CACCGTAACCGCAGCTTCT 60.374 57.895 0.00 0.00 0.00 2.85
1033 1823 1.390463 GTAACCGCAGCTTCTTCTTCG 59.610 52.381 0.00 0.00 0.00 3.79
1036 1826 1.678269 CCGCAGCTTCTTCTTCGTCG 61.678 60.000 0.00 0.00 0.00 5.12
1044 1834 0.583438 TCTTCTTCGTCGTCGTCGTT 59.417 50.000 11.41 0.00 38.33 3.85
1049 1839 4.104633 CGTCGTCGTCGTTGCTGC 62.105 66.667 3.67 0.00 38.33 5.25
1059 1849 4.824166 GTTGCTGCCGCTGCGATG 62.824 66.667 25.45 13.50 41.78 3.84
1063 1853 3.120385 CTGCCGCTGCGATGTTCA 61.120 61.111 25.45 11.44 41.78 3.18
1067 1857 2.108514 CCGCTGCGATGTTCACCAT 61.109 57.895 25.45 0.00 36.13 3.55
1084 1874 1.003355 ATGAGCTTCGTGGGGTGTG 60.003 57.895 0.00 0.00 0.00 3.82
1244 2049 2.452105 GCGAGAAGCGTAGTTTAGAGG 58.548 52.381 0.00 0.00 43.41 3.69
1249 2054 5.502220 CGAGAAGCGTAGTTTAGAGGTCTAC 60.502 48.000 0.00 0.00 34.64 2.59
1250 2055 5.251764 AGAAGCGTAGTTTAGAGGTCTACA 58.748 41.667 0.00 0.00 35.26 2.74
1257 2062 7.573843 GCGTAGTTTAGAGGTCTACAAAGTGTA 60.574 40.741 0.00 0.00 35.26 2.90
1269 2074 7.412672 GGTCTACAAAGTGTATGAACGATTTCC 60.413 40.741 0.00 0.00 31.66 3.13
1272 2077 7.214467 ACAAAGTGTATGAACGATTTCCAAT 57.786 32.000 0.00 0.00 0.00 3.16
1285 2090 7.387119 ACGATTTCCAATTTTTAGGACCTAC 57.613 36.000 0.00 0.00 32.62 3.18
1288 2093 9.169592 CGATTTCCAATTTTTAGGACCTACTTA 57.830 33.333 0.00 0.00 32.62 2.24
1301 2106 6.838382 AGGACCTACTTAACACACTTGAAAT 58.162 36.000 0.00 0.00 0.00 2.17
1303 2108 7.876582 AGGACCTACTTAACACACTTGAAATAC 59.123 37.037 0.00 0.00 0.00 1.89
1316 2121 8.352942 CACACTTGAAATACTTTTAGGAGCTTT 58.647 33.333 0.00 0.00 0.00 3.51
1419 3665 6.427853 AGCTTGATACGCATATGCTCAATAAA 59.572 34.615 23.40 13.88 39.32 1.40
1421 3667 8.390354 GCTTGATACGCATATGCTCAATAAATA 58.610 33.333 23.40 7.74 39.32 1.40
1483 3729 3.560025 CCAATGTCTAGCCATATCCCACC 60.560 52.174 0.00 0.00 0.00 4.61
1489 3735 3.785887 TCTAGCCATATCCCACCACTTTT 59.214 43.478 0.00 0.00 0.00 2.27
1502 3749 3.503748 CACCACTTTTCATCTCCTTGTCC 59.496 47.826 0.00 0.00 0.00 4.02
1508 3755 6.148480 CACTTTTCATCTCCTTGTCCAACTAG 59.852 42.308 0.00 0.00 0.00 2.57
1523 3770 0.343372 ACTAGCAGGGAGGGGAATGA 59.657 55.000 0.00 0.00 0.00 2.57
1534 3781 3.282885 GAGGGGAATGACCACAAGAATC 58.717 50.000 0.00 0.00 46.31 2.52
1535 3782 2.017049 GGGGAATGACCACAAGAATCG 58.983 52.381 0.00 0.00 42.69 3.34
1536 3783 2.355716 GGGGAATGACCACAAGAATCGA 60.356 50.000 0.00 0.00 42.69 3.59
1537 3784 2.939103 GGGAATGACCACAAGAATCGAG 59.061 50.000 0.00 0.00 41.20 4.04
1538 3785 3.369471 GGGAATGACCACAAGAATCGAGA 60.369 47.826 0.00 0.00 41.20 4.04
1539 3786 4.253685 GGAATGACCACAAGAATCGAGAA 58.746 43.478 0.00 0.00 38.79 2.87
1540 3787 4.331168 GGAATGACCACAAGAATCGAGAAG 59.669 45.833 0.00 0.00 38.79 2.85
1541 3788 2.688507 TGACCACAAGAATCGAGAAGC 58.311 47.619 0.00 0.00 0.00 3.86
1542 3789 2.037121 TGACCACAAGAATCGAGAAGCA 59.963 45.455 0.00 0.00 0.00 3.91
1543 3790 3.265791 GACCACAAGAATCGAGAAGCAT 58.734 45.455 0.00 0.00 0.00 3.79
1544 3791 3.679389 ACCACAAGAATCGAGAAGCATT 58.321 40.909 0.00 0.00 0.00 3.56
1545 3792 4.832248 ACCACAAGAATCGAGAAGCATTA 58.168 39.130 0.00 0.00 0.00 1.90
1546 3793 4.872691 ACCACAAGAATCGAGAAGCATTAG 59.127 41.667 0.00 0.00 0.00 1.73
1547 3794 4.272018 CCACAAGAATCGAGAAGCATTAGG 59.728 45.833 0.00 0.00 0.00 2.69
1548 3795 3.873952 ACAAGAATCGAGAAGCATTAGGC 59.126 43.478 0.00 0.00 45.30 3.93
1549 3796 3.118905 AGAATCGAGAAGCATTAGGCC 57.881 47.619 0.00 0.00 46.50 5.19
1550 3797 2.703007 AGAATCGAGAAGCATTAGGCCT 59.297 45.455 11.78 11.78 46.50 5.19
1551 3798 2.829741 ATCGAGAAGCATTAGGCCTC 57.170 50.000 9.68 0.00 46.50 4.70
1552 3799 0.753262 TCGAGAAGCATTAGGCCTCC 59.247 55.000 9.68 0.00 46.50 4.30
1553 3800 0.755686 CGAGAAGCATTAGGCCTCCT 59.244 55.000 9.68 0.00 46.50 3.69
1554 3801 1.139853 CGAGAAGCATTAGGCCTCCTT 59.860 52.381 9.68 8.15 46.50 3.36
1555 3802 2.420687 CGAGAAGCATTAGGCCTCCTTT 60.421 50.000 9.68 0.00 46.50 3.11
1556 3803 2.948315 GAGAAGCATTAGGCCTCCTTTG 59.052 50.000 9.68 3.94 46.50 2.77
1557 3804 2.027385 GAAGCATTAGGCCTCCTTTGG 58.973 52.381 9.68 0.00 46.50 3.28
1558 3805 1.002857 AGCATTAGGCCTCCTTTGGT 58.997 50.000 9.68 5.73 46.50 3.67
1559 3806 1.359130 AGCATTAGGCCTCCTTTGGTT 59.641 47.619 9.68 0.00 46.50 3.67
1560 3807 2.179427 GCATTAGGCCTCCTTTGGTTT 58.821 47.619 9.68 0.00 34.61 3.27
1561 3808 2.094026 GCATTAGGCCTCCTTTGGTTTG 60.094 50.000 9.68 0.00 34.61 2.93
1562 3809 2.302587 TTAGGCCTCCTTTGGTTTGG 57.697 50.000 9.68 0.00 34.61 3.28
1563 3810 1.451449 TAGGCCTCCTTTGGTTTGGA 58.549 50.000 9.68 0.00 34.61 3.53
1564 3811 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
1571 3818 5.139435 CTCCTTTGGTTTGGAGGAATTTC 57.861 43.478 0.00 0.00 44.44 2.17
1572 3819 4.551671 TCCTTTGGTTTGGAGGAATTTCA 58.448 39.130 0.00 0.00 36.67 2.69
1573 3820 5.154418 TCCTTTGGTTTGGAGGAATTTCAT 58.846 37.500 0.00 0.00 36.67 2.57
1574 3821 6.318913 TCCTTTGGTTTGGAGGAATTTCATA 58.681 36.000 0.00 0.00 36.67 2.15
1575 3822 6.437162 TCCTTTGGTTTGGAGGAATTTCATAG 59.563 38.462 0.00 0.00 36.67 2.23
1576 3823 6.351286 CCTTTGGTTTGGAGGAATTTCATAGG 60.351 42.308 0.00 0.00 32.11 2.57
1577 3824 5.528600 TGGTTTGGAGGAATTTCATAGGA 57.471 39.130 0.00 0.00 0.00 2.94
1578 3825 5.898120 TGGTTTGGAGGAATTTCATAGGAA 58.102 37.500 0.00 0.00 0.00 3.36
1579 3826 6.502138 TGGTTTGGAGGAATTTCATAGGAAT 58.498 36.000 0.00 0.00 31.93 3.01
1580 3827 6.959366 TGGTTTGGAGGAATTTCATAGGAATT 59.041 34.615 0.00 0.00 31.93 2.17
1581 3828 7.124147 TGGTTTGGAGGAATTTCATAGGAATTC 59.876 37.037 0.00 0.00 31.93 2.17
1582 3829 7.343057 GGTTTGGAGGAATTTCATAGGAATTCT 59.657 37.037 5.23 0.00 31.93 2.40
1583 3830 9.408648 GTTTGGAGGAATTTCATAGGAATTCTA 57.591 33.333 5.23 0.00 31.93 2.10
1584 3831 9.632638 TTTGGAGGAATTTCATAGGAATTCTAG 57.367 33.333 5.23 0.00 31.93 2.43
1585 3832 8.567198 TGGAGGAATTTCATAGGAATTCTAGA 57.433 34.615 5.23 0.00 31.93 2.43
1586 3833 9.003145 TGGAGGAATTTCATAGGAATTCTAGAA 57.997 33.333 7.82 7.82 31.93 2.10
1587 3834 9.500785 GGAGGAATTTCATAGGAATTCTAGAAG 57.499 37.037 11.53 0.00 31.93 2.85
1636 3883 8.918202 TCTTTTATTTAGAGCTCTTTGGTTCA 57.082 30.769 23.84 0.00 0.00 3.18
1637 3884 9.520515 TCTTTTATTTAGAGCTCTTTGGTTCAT 57.479 29.630 23.84 6.39 0.00 2.57
1640 3887 8.964476 TTATTTAGAGCTCTTTGGTTCATAGG 57.036 34.615 23.84 0.00 0.00 2.57
1641 3888 6.620877 TTTAGAGCTCTTTGGTTCATAGGA 57.379 37.500 23.84 0.00 0.00 2.94
1642 3889 6.620877 TTAGAGCTCTTTGGTTCATAGGAA 57.379 37.500 23.84 1.75 0.00 3.36
1643 3890 5.707066 AGAGCTCTTTGGTTCATAGGAAT 57.293 39.130 11.45 0.00 35.05 3.01
1644 3891 6.814954 AGAGCTCTTTGGTTCATAGGAATA 57.185 37.500 11.45 0.00 35.05 1.75
1645 3892 6.825610 AGAGCTCTTTGGTTCATAGGAATAG 58.174 40.000 11.45 0.00 35.05 1.73
1646 3893 6.613271 AGAGCTCTTTGGTTCATAGGAATAGA 59.387 38.462 11.45 0.00 35.05 1.98
1647 3894 7.292120 AGAGCTCTTTGGTTCATAGGAATAGAT 59.708 37.037 11.45 0.00 35.05 1.98
1648 3895 7.810260 AGCTCTTTGGTTCATAGGAATAGATT 58.190 34.615 0.00 0.00 35.05 2.40
1649 3896 7.936301 AGCTCTTTGGTTCATAGGAATAGATTC 59.064 37.037 0.00 0.00 35.05 2.52
1685 3932 5.032327 GGATTGGTTCCTATCCTTTACGT 57.968 43.478 19.71 0.00 41.78 3.57
1686 3933 5.434408 GGATTGGTTCCTATCCTTTACGTT 58.566 41.667 19.71 0.00 41.78 3.99
1687 3934 5.884232 GGATTGGTTCCTATCCTTTACGTTT 59.116 40.000 19.71 0.00 41.78 3.60
1688 3935 6.037940 GGATTGGTTCCTATCCTTTACGTTTC 59.962 42.308 19.71 0.00 41.78 2.78
1689 3936 5.486735 TGGTTCCTATCCTTTACGTTTCA 57.513 39.130 0.00 0.00 0.00 2.69
1690 3937 6.057321 TGGTTCCTATCCTTTACGTTTCAT 57.943 37.500 0.00 0.00 0.00 2.57
1691 3938 7.185318 TGGTTCCTATCCTTTACGTTTCATA 57.815 36.000 0.00 0.00 0.00 2.15
1692 3939 7.270047 TGGTTCCTATCCTTTACGTTTCATAG 58.730 38.462 0.00 0.00 0.00 2.23
1693 3940 6.704937 GGTTCCTATCCTTTACGTTTCATAGG 59.295 42.308 0.00 2.99 35.93 2.57
1694 3941 7.418254 GGTTCCTATCCTTTACGTTTCATAGGA 60.418 40.741 13.36 13.36 39.98 2.94
1695 3942 7.664552 TCCTATCCTTTACGTTTCATAGGAA 57.335 36.000 14.34 0.00 39.17 3.36
1696 3943 8.081517 TCCTATCCTTTACGTTTCATAGGAAA 57.918 34.615 14.34 0.00 39.17 3.13
1697 3944 8.542080 TCCTATCCTTTACGTTTCATAGGAAAA 58.458 33.333 3.78 0.00 44.18 2.29
1698 3945 9.338622 CCTATCCTTTACGTTTCATAGGAAAAT 57.661 33.333 3.78 0.00 44.18 1.82
1717 3964 9.975218 AGGAAAATAAAAATTAGCCTAGACTCA 57.025 29.630 0.00 0.00 0.00 3.41
1759 4006 5.766150 TCAACCAAATGACATCTCGTTTT 57.234 34.783 0.00 0.00 33.97 2.43
1760 4007 5.757886 TCAACCAAATGACATCTCGTTTTC 58.242 37.500 0.00 0.00 33.97 2.29
1761 4008 5.530915 TCAACCAAATGACATCTCGTTTTCT 59.469 36.000 0.00 0.00 33.97 2.52
1762 4009 6.708502 TCAACCAAATGACATCTCGTTTTCTA 59.291 34.615 0.00 0.00 33.97 2.10
1763 4010 7.390440 TCAACCAAATGACATCTCGTTTTCTAT 59.610 33.333 0.00 0.00 33.97 1.98
1764 4011 7.687941 ACCAAATGACATCTCGTTTTCTATT 57.312 32.000 0.00 0.00 33.97 1.73
1765 4012 7.752695 ACCAAATGACATCTCGTTTTCTATTC 58.247 34.615 0.00 0.00 33.97 1.75
1766 4013 7.148239 ACCAAATGACATCTCGTTTTCTATTCC 60.148 37.037 0.00 0.00 33.97 3.01
1767 4014 7.066284 CCAAATGACATCTCGTTTTCTATTCCT 59.934 37.037 0.00 0.00 33.97 3.36
1768 4015 9.098355 CAAATGACATCTCGTTTTCTATTCCTA 57.902 33.333 0.00 0.00 33.97 2.94
1769 4016 8.649973 AATGACATCTCGTTTTCTATTCCTAC 57.350 34.615 0.00 0.00 0.00 3.18
1770 4017 7.406031 TGACATCTCGTTTTCTATTCCTACT 57.594 36.000 0.00 0.00 0.00 2.57
1771 4018 7.481642 TGACATCTCGTTTTCTATTCCTACTC 58.518 38.462 0.00 0.00 0.00 2.59
1772 4019 7.122204 TGACATCTCGTTTTCTATTCCTACTCA 59.878 37.037 0.00 0.00 0.00 3.41
1773 4020 8.012957 ACATCTCGTTTTCTATTCCTACTCAT 57.987 34.615 0.00 0.00 0.00 2.90
1774 4021 9.132923 ACATCTCGTTTTCTATTCCTACTCATA 57.867 33.333 0.00 0.00 0.00 2.15
1775 4022 9.619316 CATCTCGTTTTCTATTCCTACTCATAG 57.381 37.037 0.00 0.00 0.00 2.23
1792 4039 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
1793 4040 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
1794 4041 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
1795 4042 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
1796 4043 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
1797 4044 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
1806 4053 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
1807 4054 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
1808 4055 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
1809 4056 9.330063 GATACATGTCATCTCATTTCCTACAAA 57.670 33.333 0.00 0.00 0.00 2.83
1810 4057 9.857656 ATACATGTCATCTCATTTCCTACAAAT 57.142 29.630 0.00 0.00 0.00 2.32
1811 4058 8.585471 ACATGTCATCTCATTTCCTACAAATT 57.415 30.769 0.00 0.00 0.00 1.82
1812 4059 9.028284 ACATGTCATCTCATTTCCTACAAATTT 57.972 29.630 0.00 0.00 0.00 1.82
1813 4060 9.865321 CATGTCATCTCATTTCCTACAAATTTT 57.135 29.630 0.00 0.00 0.00 1.82
1815 4062 9.300681 TGTCATCTCATTTCCTACAAATTTTCT 57.699 29.630 0.00 0.00 0.00 2.52
1824 4071 8.964420 TTTCCTACAAATTTTCTATTTCTGCG 57.036 30.769 0.00 0.00 0.00 5.18
1825 4072 7.915293 TCCTACAAATTTTCTATTTCTGCGA 57.085 32.000 0.00 0.00 0.00 5.10
1826 4073 8.506168 TCCTACAAATTTTCTATTTCTGCGAT 57.494 30.769 0.00 0.00 0.00 4.58
1827 4074 9.607988 TCCTACAAATTTTCTATTTCTGCGATA 57.392 29.630 0.00 0.00 0.00 2.92
1831 4078 9.736023 ACAAATTTTCTATTTCTGCGATAATCC 57.264 29.630 0.00 0.00 0.00 3.01
1832 4079 9.956720 CAAATTTTCTATTTCTGCGATAATCCT 57.043 29.630 0.00 0.00 0.00 3.24
1836 4083 9.436957 TTTTCTATTTCTGCGATAATCCTATCC 57.563 33.333 0.00 0.00 31.68 2.59
1853 4100 4.634004 CCTATCCTTAACGTGTGCATCAAA 59.366 41.667 0.00 0.00 0.00 2.69
1854 4101 5.123186 CCTATCCTTAACGTGTGCATCAAAA 59.877 40.000 0.00 0.00 0.00 2.44
1855 4102 4.481930 TCCTTAACGTGTGCATCAAAAG 57.518 40.909 0.00 0.00 0.00 2.27
1856 4103 3.252215 TCCTTAACGTGTGCATCAAAAGG 59.748 43.478 0.00 0.00 34.79 3.11
1861 4108 0.961019 GTGTGCATCAAAAGGGCTCA 59.039 50.000 0.00 0.00 0.00 4.26
1875 4122 2.893895 CTCACTCGCGCATGCCAT 60.894 61.111 13.15 0.00 38.08 4.40
1893 4140 0.396435 ATGTCGGCAGAGGAACACAA 59.604 50.000 0.00 0.00 0.00 3.33
1903 4150 5.451798 GGCAGAGGAACACAATGAAAAGAAA 60.452 40.000 0.00 0.00 0.00 2.52
1914 4161 9.154847 ACACAATGAAAAGAAAAGAGGAAAAAG 57.845 29.630 0.00 0.00 0.00 2.27
1920 4167 4.210832 AGAAAAGAGGAAAAAGCGAACG 57.789 40.909 0.00 0.00 0.00 3.95
1922 4169 1.305201 AAGAGGAAAAAGCGAACGCA 58.695 45.000 20.66 0.00 44.88 5.24
1966 4213 1.371267 CGGTCAAGTCGTCGCTTCA 60.371 57.895 0.00 0.00 0.00 3.02
2006 4253 1.329599 ACGTGAAAACGCCTTGAACTC 59.670 47.619 0.00 0.00 36.44 3.01
2020 4267 1.132849 TGAACTCCACCCCTTCTCTCA 60.133 52.381 0.00 0.00 0.00 3.27
2025 4272 1.132849 TCCACCCCTTCTCTCAAGTCA 60.133 52.381 0.00 0.00 0.00 3.41
2045 4292 0.035458 CACGCAACCTCTCCTTTCCT 59.965 55.000 0.00 0.00 0.00 3.36
2055 4302 3.387699 CCTCTCCTTTCCTCTCCAATCTC 59.612 52.174 0.00 0.00 0.00 2.75
2082 4329 3.574284 TTTTCATTCACATCGGCAAGG 57.426 42.857 0.00 0.00 0.00 3.61
2086 4333 1.135315 CATTCACATCGGCAAGGGTTG 60.135 52.381 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
322 335 5.953183 TGATCGATTGGTCAAATTTGAAGG 58.047 37.500 22.07 8.36 39.21 3.46
329 342 4.440525 GCATGGTTGATCGATTGGTCAAAT 60.441 41.667 10.33 0.00 36.23 2.32
383 676 2.644798 ACTTCCTAGGCTTTGTCATGGT 59.355 45.455 2.96 0.00 0.00 3.55
669 1453 0.109319 CACCGGGAAAAAGGCAATCG 60.109 55.000 6.32 0.00 0.00 3.34
817 1606 7.044181 GTCATCTGATGTGTGTATATATGGGG 58.956 42.308 16.66 0.00 0.00 4.96
818 1607 7.845037 AGTCATCTGATGTGTGTATATATGGG 58.155 38.462 16.66 0.00 0.00 4.00
819 1608 8.526147 TGAGTCATCTGATGTGTGTATATATGG 58.474 37.037 16.66 0.00 0.00 2.74
820 1609 9.351570 GTGAGTCATCTGATGTGTGTATATATG 57.648 37.037 16.66 0.00 0.00 1.78
821 1610 9.082313 TGTGAGTCATCTGATGTGTGTATATAT 57.918 33.333 16.66 0.00 0.00 0.86
822 1611 8.352942 GTGTGAGTCATCTGATGTGTGTATATA 58.647 37.037 16.66 0.00 0.00 0.86
823 1612 7.147846 TGTGTGAGTCATCTGATGTGTGTATAT 60.148 37.037 16.66 0.00 0.00 0.86
824 1613 6.152661 TGTGTGAGTCATCTGATGTGTGTATA 59.847 38.462 16.66 0.00 0.00 1.47
825 1614 5.047092 TGTGTGAGTCATCTGATGTGTGTAT 60.047 40.000 16.66 0.00 0.00 2.29
826 1615 4.280677 TGTGTGAGTCATCTGATGTGTGTA 59.719 41.667 16.66 0.00 0.00 2.90
827 1616 3.070015 TGTGTGAGTCATCTGATGTGTGT 59.930 43.478 16.66 1.24 0.00 3.72
828 1617 3.656559 TGTGTGAGTCATCTGATGTGTG 58.343 45.455 16.66 0.00 0.00 3.82
829 1618 4.202295 ACTTGTGTGAGTCATCTGATGTGT 60.202 41.667 16.66 5.95 0.00 3.72
830 1619 4.151867 CACTTGTGTGAGTCATCTGATGTG 59.848 45.833 16.66 0.53 46.55 3.21
831 1620 4.313282 CACTTGTGTGAGTCATCTGATGT 58.687 43.478 16.66 0.00 46.55 3.06
832 1621 3.683340 CCACTTGTGTGAGTCATCTGATG 59.317 47.826 11.42 11.42 46.55 3.07
833 1622 3.326006 ACCACTTGTGTGAGTCATCTGAT 59.674 43.478 0.00 0.00 46.55 2.90
834 1623 2.700371 ACCACTTGTGTGAGTCATCTGA 59.300 45.455 0.00 0.00 46.55 3.27
835 1624 2.804527 CACCACTTGTGTGAGTCATCTG 59.195 50.000 0.00 0.00 46.55 2.90
836 1625 2.224378 CCACCACTTGTGTGAGTCATCT 60.224 50.000 0.00 0.00 46.55 2.90
837 1626 2.146342 CCACCACTTGTGTGAGTCATC 58.854 52.381 0.00 0.00 46.55 2.92
838 1627 1.768275 TCCACCACTTGTGTGAGTCAT 59.232 47.619 0.00 0.00 46.55 3.06
839 1628 1.134521 GTCCACCACTTGTGTGAGTCA 60.135 52.381 0.00 0.00 46.55 3.41
840 1629 1.139058 AGTCCACCACTTGTGTGAGTC 59.861 52.381 0.00 0.00 46.55 3.36
841 1630 1.204146 AGTCCACCACTTGTGTGAGT 58.796 50.000 0.00 0.00 46.55 3.41
842 1631 2.868044 GCTAGTCCACCACTTGTGTGAG 60.868 54.545 0.00 0.00 46.55 3.51
843 1632 1.070134 GCTAGTCCACCACTTGTGTGA 59.930 52.381 0.00 0.00 46.55 3.58
844 1633 1.202639 TGCTAGTCCACCACTTGTGTG 60.203 52.381 0.00 0.00 43.85 3.82
845 1634 1.128200 TGCTAGTCCACCACTTGTGT 58.872 50.000 0.00 0.00 43.85 3.72
846 1635 1.512926 GTGCTAGTCCACCACTTGTG 58.487 55.000 0.00 0.00 45.01 3.33
854 1643 1.376037 GGTGCTGGTGCTAGTCCAC 60.376 63.158 5.00 0.00 40.48 4.02
855 1644 1.830587 CTGGTGCTGGTGCTAGTCCA 61.831 60.000 8.16 8.16 40.48 4.02
856 1645 1.078848 CTGGTGCTGGTGCTAGTCC 60.079 63.158 0.00 0.00 40.48 3.85
857 1646 0.390472 GTCTGGTGCTGGTGCTAGTC 60.390 60.000 0.00 0.00 40.48 2.59
858 1647 0.833834 AGTCTGGTGCTGGTGCTAGT 60.834 55.000 0.00 0.00 40.48 2.57
859 1648 0.390866 CAGTCTGGTGCTGGTGCTAG 60.391 60.000 0.00 0.00 40.48 3.42
860 1649 1.673477 CAGTCTGGTGCTGGTGCTA 59.327 57.895 0.00 0.00 40.48 3.49
861 1650 2.429058 CAGTCTGGTGCTGGTGCT 59.571 61.111 0.00 0.00 40.48 4.40
862 1651 3.360340 GCAGTCTGGTGCTGGTGC 61.360 66.667 1.14 0.00 40.54 5.01
863 1652 0.892358 ATTGCAGTCTGGTGCTGGTG 60.892 55.000 1.14 0.00 44.32 4.17
864 1653 0.607489 GATTGCAGTCTGGTGCTGGT 60.607 55.000 1.27 0.00 44.32 4.00
865 1654 0.322277 AGATTGCAGTCTGGTGCTGG 60.322 55.000 11.42 0.00 44.32 4.85
866 1655 1.085091 GAGATTGCAGTCTGGTGCTG 58.915 55.000 17.40 0.00 44.32 4.41
867 1656 0.035630 GGAGATTGCAGTCTGGTGCT 60.036 55.000 17.40 0.00 44.32 4.40
868 1657 0.321919 TGGAGATTGCAGTCTGGTGC 60.322 55.000 17.40 1.70 44.27 5.01
869 1658 1.271001 TGTGGAGATTGCAGTCTGGTG 60.271 52.381 17.40 0.00 0.00 4.17
870 1659 1.059098 TGTGGAGATTGCAGTCTGGT 58.941 50.000 17.40 0.00 0.00 4.00
871 1660 1.446907 GTGTGGAGATTGCAGTCTGG 58.553 55.000 17.40 0.00 0.00 3.86
872 1661 1.446907 GGTGTGGAGATTGCAGTCTG 58.553 55.000 17.40 0.00 0.00 3.51
873 1662 0.326264 GGGTGTGGAGATTGCAGTCT 59.674 55.000 12.08 12.08 0.00 3.24
874 1663 0.036732 TGGGTGTGGAGATTGCAGTC 59.963 55.000 0.00 0.00 0.00 3.51
875 1664 0.037303 CTGGGTGTGGAGATTGCAGT 59.963 55.000 0.00 0.00 0.00 4.40
876 1665 0.325933 TCTGGGTGTGGAGATTGCAG 59.674 55.000 0.00 0.00 0.00 4.41
877 1666 0.770499 TTCTGGGTGTGGAGATTGCA 59.230 50.000 0.00 0.00 0.00 4.08
878 1667 1.168714 GTTCTGGGTGTGGAGATTGC 58.831 55.000 0.00 0.00 0.00 3.56
879 1668 1.073763 TGGTTCTGGGTGTGGAGATTG 59.926 52.381 0.00 0.00 0.00 2.67
880 1669 1.352352 CTGGTTCTGGGTGTGGAGATT 59.648 52.381 0.00 0.00 0.00 2.40
881 1670 0.987294 CTGGTTCTGGGTGTGGAGAT 59.013 55.000 0.00 0.00 0.00 2.75
882 1671 1.127567 CCTGGTTCTGGGTGTGGAGA 61.128 60.000 0.00 0.00 0.00 3.71
883 1672 1.376466 CCTGGTTCTGGGTGTGGAG 59.624 63.158 0.00 0.00 0.00 3.86
884 1673 2.829384 GCCTGGTTCTGGGTGTGGA 61.829 63.158 0.00 0.00 0.00 4.02
885 1674 2.282462 GCCTGGTTCTGGGTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
886 1675 2.469465 ATCGCCTGGTTCTGGGTGTG 62.469 60.000 0.00 0.00 34.96 3.82
887 1676 1.779061 AATCGCCTGGTTCTGGGTGT 61.779 55.000 0.00 0.00 34.96 4.16
888 1677 1.002134 AATCGCCTGGTTCTGGGTG 60.002 57.895 0.00 0.00 34.71 4.61
889 1678 1.299976 GAATCGCCTGGTTCTGGGT 59.700 57.895 0.00 0.00 0.00 4.51
890 1679 1.452108 GGAATCGCCTGGTTCTGGG 60.452 63.158 0.00 0.00 0.00 4.45
891 1680 1.815421 CGGAATCGCCTGGTTCTGG 60.815 63.158 0.00 0.00 0.00 3.86
892 1681 1.815421 CCGGAATCGCCTGGTTCTG 60.815 63.158 0.00 0.00 34.56 3.02
893 1682 2.584608 CCGGAATCGCCTGGTTCT 59.415 61.111 0.00 0.00 34.56 3.01
894 1683 2.513897 CCCGGAATCGCCTGGTTC 60.514 66.667 0.73 0.00 36.35 3.62
895 1684 3.006728 TCCCGGAATCGCCTGGTT 61.007 61.111 0.73 0.00 41.52 3.67
896 1685 3.470888 CTCCCGGAATCGCCTGGT 61.471 66.667 0.73 0.00 41.52 4.00
897 1686 3.154473 TCTCCCGGAATCGCCTGG 61.154 66.667 0.73 0.00 42.12 4.45
898 1687 2.107141 GTCTCCCGGAATCGCCTG 59.893 66.667 0.73 0.00 34.56 4.85
899 1688 2.363795 TGTCTCCCGGAATCGCCT 60.364 61.111 0.73 0.00 34.56 5.52
900 1689 2.202892 GTGTCTCCCGGAATCGCC 60.203 66.667 0.73 0.00 34.56 5.54
901 1690 2.202892 GGTGTCTCCCGGAATCGC 60.203 66.667 0.73 0.00 34.56 4.58
902 1691 1.141881 CAGGTGTCTCCCGGAATCG 59.858 63.158 0.73 0.00 36.75 3.34
903 1692 1.153349 GCAGGTGTCTCCCGGAATC 60.153 63.158 0.73 0.00 36.75 2.52
904 1693 2.990479 GCAGGTGTCTCCCGGAAT 59.010 61.111 0.73 0.00 36.75 3.01
905 1694 3.691342 CGCAGGTGTCTCCCGGAA 61.691 66.667 0.73 0.00 36.75 4.30
906 1695 4.988716 ACGCAGGTGTCTCCCGGA 62.989 66.667 0.73 0.00 36.75 5.14
907 1696 4.742201 CACGCAGGTGTCTCCCGG 62.742 72.222 0.00 0.00 39.38 5.73
909 1698 3.612247 ATGCACGCAGGTGTCTCCC 62.612 63.158 0.00 0.00 46.13 4.30
910 1699 2.046892 ATGCACGCAGGTGTCTCC 60.047 61.111 0.00 0.00 46.13 3.71
911 1700 3.031964 GCATGCACGCAGGTGTCTC 62.032 63.158 14.21 0.00 46.13 3.36
912 1701 3.052082 GCATGCACGCAGGTGTCT 61.052 61.111 14.21 0.00 46.13 3.41
913 1702 4.450122 CGCATGCACGCAGGTGTC 62.450 66.667 19.57 0.00 46.13 3.67
929 1718 2.600321 TCTACGGACTTACGGAGCACG 61.600 57.143 0.00 0.00 44.38 5.34
930 1719 1.063764 CTCTACGGACTTACGGAGCAC 59.936 57.143 0.00 0.00 44.38 4.40
931 1720 1.339438 ACTCTACGGACTTACGGAGCA 60.339 52.381 0.00 0.00 44.38 4.26
932 1721 1.377536 ACTCTACGGACTTACGGAGC 58.622 55.000 0.00 0.00 44.38 4.70
933 1722 4.083110 TGAAAACTCTACGGACTTACGGAG 60.083 45.833 0.00 0.00 46.07 4.63
934 1723 3.820467 TGAAAACTCTACGGACTTACGGA 59.180 43.478 0.00 0.00 38.39 4.69
935 1724 4.083110 TCTGAAAACTCTACGGACTTACGG 60.083 45.833 0.00 0.00 38.39 4.02
936 1725 5.039480 TCTGAAAACTCTACGGACTTACG 57.961 43.478 0.00 0.00 40.31 3.18
937 1726 5.182760 TCCTCTGAAAACTCTACGGACTTAC 59.817 44.000 0.00 0.00 0.00 2.34
938 1727 5.319453 TCCTCTGAAAACTCTACGGACTTA 58.681 41.667 0.00 0.00 0.00 2.24
939 1728 4.150359 TCCTCTGAAAACTCTACGGACTT 58.850 43.478 0.00 0.00 0.00 3.01
940 1729 3.764218 TCCTCTGAAAACTCTACGGACT 58.236 45.455 0.00 0.00 0.00 3.85
941 1730 4.674475 GATCCTCTGAAAACTCTACGGAC 58.326 47.826 0.00 0.00 0.00 4.79
942 1731 3.377485 CGATCCTCTGAAAACTCTACGGA 59.623 47.826 0.00 0.00 0.00 4.69
943 1732 3.377485 TCGATCCTCTGAAAACTCTACGG 59.623 47.826 0.00 0.00 0.00 4.02
944 1733 4.333095 TCTCGATCCTCTGAAAACTCTACG 59.667 45.833 0.00 0.00 0.00 3.51
945 1734 5.821516 TCTCGATCCTCTGAAAACTCTAC 57.178 43.478 0.00 0.00 0.00 2.59
949 1738 4.952957 TGAGATCTCGATCCTCTGAAAACT 59.047 41.667 17.76 0.00 38.58 2.66
951 1740 4.340666 CCTGAGATCTCGATCCTCTGAAAA 59.659 45.833 17.76 0.00 38.58 2.29
970 1759 2.281484 GCAAAGGACGTGCCCTGA 60.281 61.111 2.38 0.00 36.49 3.86
971 1760 1.856265 GAAGCAAAGGACGTGCCCTG 61.856 60.000 2.38 2.21 43.27 4.45
978 1767 1.068954 GCTTCCAAGAAGCAAAGGACG 60.069 52.381 21.30 0.00 42.56 4.79
981 1770 1.331214 TGGCTTCCAAGAAGCAAAGG 58.669 50.000 25.78 0.00 44.71 3.11
990 1780 2.409870 GGCGTCCATGGCTTCCAAG 61.410 63.158 6.96 0.00 36.95 3.61
993 1783 4.424711 TGGGCGTCCATGGCTTCC 62.425 66.667 3.51 7.15 38.32 3.46
995 1785 4.740822 GGTGGGCGTCCATGGCTT 62.741 66.667 14.23 0.00 46.09 4.35
1007 1797 3.894547 AAGCTGCGGTTACGGTGGG 62.895 63.158 0.00 0.00 41.36 4.61
1015 1805 0.249911 ACGAAGAAGAAGCTGCGGTT 60.250 50.000 0.00 0.00 41.30 4.44
1026 1816 0.695943 CAACGACGACGACGAAGAAG 59.304 55.000 25.15 6.91 42.66 2.85
1027 1817 1.264141 GCAACGACGACGACGAAGAA 61.264 55.000 25.15 0.00 42.66 2.52
1033 1823 3.764049 GGCAGCAACGACGACGAC 61.764 66.667 15.32 3.02 42.66 4.34
1049 1839 2.108514 ATGGTGAACATCGCAGCGG 61.109 57.895 16.42 1.60 33.53 5.52
1054 1844 1.063174 GAAGCTCATGGTGAACATCGC 59.937 52.381 0.00 0.00 37.84 4.58
1055 1845 1.325640 CGAAGCTCATGGTGAACATCG 59.674 52.381 0.00 0.00 37.84 3.84
1059 1849 0.798776 CCACGAAGCTCATGGTGAAC 59.201 55.000 2.43 0.00 32.23 3.18
1060 1850 0.321564 CCCACGAAGCTCATGGTGAA 60.322 55.000 9.36 0.00 32.23 3.18
1063 1853 2.224159 ACCCCACGAAGCTCATGGT 61.224 57.895 9.36 0.00 0.00 3.55
1067 1857 2.425592 CACACCCCACGAAGCTCA 59.574 61.111 0.00 0.00 0.00 4.26
1119 1909 4.736896 GACGCCGTGGTGGAGGAC 62.737 72.222 0.00 0.00 42.78 3.85
1238 2043 7.175467 TCGTTCATACACTTTGTAGACCTCTAA 59.825 37.037 0.00 0.00 36.14 2.10
1243 2048 6.963049 AATCGTTCATACACTTTGTAGACC 57.037 37.500 0.00 0.00 36.14 3.85
1244 2049 7.117236 TGGAAATCGTTCATACACTTTGTAGAC 59.883 37.037 0.00 0.00 36.14 2.59
1249 2054 8.519492 AAATTGGAAATCGTTCATACACTTTG 57.481 30.769 0.00 0.00 35.25 2.77
1250 2055 9.541143 AAAAATTGGAAATCGTTCATACACTTT 57.459 25.926 0.00 0.00 35.25 2.66
1257 2062 7.178451 AGGTCCTAAAAATTGGAAATCGTTCAT 59.822 33.333 0.00 0.00 35.25 2.57
1269 2074 9.063615 AGTGTGTTAAGTAGGTCCTAAAAATTG 57.936 33.333 0.00 0.00 0.00 2.32
1272 2077 8.266473 TCAAGTGTGTTAAGTAGGTCCTAAAAA 58.734 33.333 0.00 0.00 0.00 1.94
1288 2093 7.502561 AGCTCCTAAAAGTATTTCAAGTGTGTT 59.497 33.333 0.00 0.00 37.28 3.32
1289 2094 6.998673 AGCTCCTAAAAGTATTTCAAGTGTGT 59.001 34.615 0.00 0.00 37.28 3.72
1335 2140 9.770097 TGAGTTCCTCAAAGATCATATGTATTC 57.230 33.333 1.90 0.00 37.57 1.75
1345 2150 6.205464 TGTGAAATGTGAGTTCCTCAAAGATC 59.795 38.462 0.00 0.00 42.46 2.75
1353 2158 4.949856 AGTGTTTGTGAAATGTGAGTTCCT 59.050 37.500 0.00 0.00 0.00 3.36
1361 2166 4.318760 CGATGACGAGTGTTTGTGAAATGT 60.319 41.667 0.00 0.00 42.66 2.71
1362 2167 4.143835 CGATGACGAGTGTTTGTGAAATG 58.856 43.478 0.00 0.00 42.66 2.32
1372 2177 5.563085 GCTTATTATCTCCGATGACGAGTGT 60.563 44.000 0.00 0.00 42.66 3.55
1426 3672 2.027837 CCTTTTGCTTCCAAATCCAGGG 60.028 50.000 0.00 0.00 40.40 4.45
1483 3729 4.823989 AGTTGGACAAGGAGATGAAAAGTG 59.176 41.667 0.00 0.00 0.00 3.16
1489 3735 3.173151 TGCTAGTTGGACAAGGAGATGA 58.827 45.455 0.00 0.00 0.00 2.92
1502 3749 1.133976 CATTCCCCTCCCTGCTAGTTG 60.134 57.143 0.00 0.00 0.00 3.16
1508 3755 2.308722 TGGTCATTCCCCTCCCTGC 61.309 63.158 0.00 0.00 34.77 4.85
1523 3770 2.839486 TGCTTCTCGATTCTTGTGGT 57.161 45.000 0.00 0.00 0.00 4.16
1534 3781 0.755686 AGGAGGCCTAATGCTTCTCG 59.244 55.000 4.42 0.00 45.00 4.04
1535 3782 2.948315 CAAAGGAGGCCTAATGCTTCTC 59.052 50.000 4.42 0.00 45.00 2.87
1536 3783 2.357569 CCAAAGGAGGCCTAATGCTTCT 60.358 50.000 4.42 0.00 45.00 2.85
1537 3784 2.027385 CCAAAGGAGGCCTAATGCTTC 58.973 52.381 4.42 0.00 44.92 3.86
1538 3785 1.359130 ACCAAAGGAGGCCTAATGCTT 59.641 47.619 4.42 0.00 40.92 3.91
1539 3786 1.002857 ACCAAAGGAGGCCTAATGCT 58.997 50.000 4.42 0.00 40.92 3.79
1540 3787 1.852633 AACCAAAGGAGGCCTAATGC 58.147 50.000 4.42 0.00 40.16 3.56
1541 3788 2.497273 CCAAACCAAAGGAGGCCTAATG 59.503 50.000 4.42 1.99 31.13 1.90
1542 3789 2.381961 TCCAAACCAAAGGAGGCCTAAT 59.618 45.455 4.42 0.00 31.13 1.73
1543 3790 1.783979 TCCAAACCAAAGGAGGCCTAA 59.216 47.619 4.42 0.00 31.13 2.69
1544 3791 1.354368 CTCCAAACCAAAGGAGGCCTA 59.646 52.381 4.42 0.00 46.11 3.93
1545 3792 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19
1546 3793 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
1550 3797 4.551671 TGAAATTCCTCCAAACCAAAGGA 58.448 39.130 0.00 0.00 37.42 3.36
1551 3798 4.953940 TGAAATTCCTCCAAACCAAAGG 57.046 40.909 0.00 0.00 0.00 3.11
1552 3799 6.437162 TCCTATGAAATTCCTCCAAACCAAAG 59.563 38.462 0.00 0.00 0.00 2.77
1553 3800 6.318913 TCCTATGAAATTCCTCCAAACCAAA 58.681 36.000 0.00 0.00 0.00 3.28
1554 3801 5.898120 TCCTATGAAATTCCTCCAAACCAA 58.102 37.500 0.00 0.00 0.00 3.67
1555 3802 5.528600 TCCTATGAAATTCCTCCAAACCA 57.471 39.130 0.00 0.00 0.00 3.67
1556 3803 7.343057 AGAATTCCTATGAAATTCCTCCAAACC 59.657 37.037 0.65 0.00 33.32 3.27
1557 3804 8.298729 AGAATTCCTATGAAATTCCTCCAAAC 57.701 34.615 0.65 0.00 33.32 2.93
1558 3805 9.632638 CTAGAATTCCTATGAAATTCCTCCAAA 57.367 33.333 0.65 0.00 33.32 3.28
1559 3806 9.003145 TCTAGAATTCCTATGAAATTCCTCCAA 57.997 33.333 0.65 0.00 33.32 3.53
1560 3807 8.567198 TCTAGAATTCCTATGAAATTCCTCCA 57.433 34.615 0.65 0.00 33.32 3.86
1561 3808 9.500785 CTTCTAGAATTCCTATGAAATTCCTCC 57.499 37.037 5.44 0.00 33.32 4.30
1610 3857 9.349713 TGAACCAAAGAGCTCTAAATAAAAGAA 57.650 29.630 18.59 0.00 0.00 2.52
1611 3858 8.918202 TGAACCAAAGAGCTCTAAATAAAAGA 57.082 30.769 18.59 0.00 0.00 2.52
1614 3861 9.396022 CCTATGAACCAAAGAGCTCTAAATAAA 57.604 33.333 18.59 0.83 0.00 1.40
1615 3862 8.768397 TCCTATGAACCAAAGAGCTCTAAATAA 58.232 33.333 18.59 0.15 0.00 1.40
1616 3863 8.319057 TCCTATGAACCAAAGAGCTCTAAATA 57.681 34.615 18.59 6.68 0.00 1.40
1617 3864 7.200434 TCCTATGAACCAAAGAGCTCTAAAT 57.800 36.000 18.59 3.51 0.00 1.40
1618 3865 6.620877 TCCTATGAACCAAAGAGCTCTAAA 57.379 37.500 18.59 0.00 0.00 1.85
1619 3866 6.620877 TTCCTATGAACCAAAGAGCTCTAA 57.379 37.500 18.59 0.00 0.00 2.10
1620 3867 6.814954 ATTCCTATGAACCAAAGAGCTCTA 57.185 37.500 18.59 0.00 32.13 2.43
1621 3868 5.707066 ATTCCTATGAACCAAAGAGCTCT 57.293 39.130 11.45 11.45 32.13 4.09
1622 3869 6.821388 TCTATTCCTATGAACCAAAGAGCTC 58.179 40.000 5.27 5.27 32.13 4.09
1623 3870 6.814954 TCTATTCCTATGAACCAAAGAGCT 57.185 37.500 0.00 0.00 32.13 4.09
1624 3871 8.093659 GAATCTATTCCTATGAACCAAAGAGC 57.906 38.462 0.00 0.00 32.13 4.09
1664 3911 6.596497 TGAAACGTAAAGGATAGGAACCAATC 59.404 38.462 0.00 0.00 0.00 2.67
1665 3912 6.478129 TGAAACGTAAAGGATAGGAACCAAT 58.522 36.000 0.00 0.00 0.00 3.16
1666 3913 5.867330 TGAAACGTAAAGGATAGGAACCAA 58.133 37.500 0.00 0.00 0.00 3.67
1667 3914 5.486735 TGAAACGTAAAGGATAGGAACCA 57.513 39.130 0.00 0.00 0.00 3.67
1668 3915 6.704937 CCTATGAAACGTAAAGGATAGGAACC 59.295 42.308 11.07 0.00 36.16 3.62
1669 3916 7.495055 TCCTATGAAACGTAAAGGATAGGAAC 58.505 38.462 14.58 0.00 38.86 3.62
1670 3917 7.664552 TCCTATGAAACGTAAAGGATAGGAA 57.335 36.000 14.58 4.51 38.86 3.36
1671 3918 7.664552 TTCCTATGAAACGTAAAGGATAGGA 57.335 36.000 13.60 13.60 39.66 2.94
1672 3919 8.726870 TTTTCCTATGAAACGTAAAGGATAGG 57.273 34.615 10.57 10.57 40.12 2.57
1691 3938 9.975218 TGAGTCTAGGCTAATTTTTATTTTCCT 57.025 29.630 0.00 0.00 0.00 3.36
1736 3983 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
1737 3984 5.530915 AGAAAACGAGATGTCATTTGGTTGA 59.469 36.000 4.80 0.00 0.00 3.18
1738 3985 5.762045 AGAAAACGAGATGTCATTTGGTTG 58.238 37.500 4.80 0.00 0.00 3.77
1739 3986 7.687941 ATAGAAAACGAGATGTCATTTGGTT 57.312 32.000 0.00 0.00 0.00 3.67
1740 3987 7.148239 GGAATAGAAAACGAGATGTCATTTGGT 60.148 37.037 0.00 0.00 0.00 3.67
1741 3988 7.066284 AGGAATAGAAAACGAGATGTCATTTGG 59.934 37.037 0.00 0.00 0.00 3.28
1742 3989 7.978982 AGGAATAGAAAACGAGATGTCATTTG 58.021 34.615 0.00 0.00 0.00 2.32
1743 3990 9.099454 GTAGGAATAGAAAACGAGATGTCATTT 57.901 33.333 0.00 0.00 0.00 2.32
1744 3991 8.478877 AGTAGGAATAGAAAACGAGATGTCATT 58.521 33.333 0.00 0.00 0.00 2.57
1745 3992 8.012957 AGTAGGAATAGAAAACGAGATGTCAT 57.987 34.615 0.00 0.00 0.00 3.06
1746 3993 7.122204 TGAGTAGGAATAGAAAACGAGATGTCA 59.878 37.037 0.00 0.00 0.00 3.58
1747 3994 7.481642 TGAGTAGGAATAGAAAACGAGATGTC 58.518 38.462 0.00 0.00 0.00 3.06
1748 3995 7.406031 TGAGTAGGAATAGAAAACGAGATGT 57.594 36.000 0.00 0.00 0.00 3.06
1749 3996 9.619316 CTATGAGTAGGAATAGAAAACGAGATG 57.381 37.037 0.00 0.00 0.00 2.90
1766 4013 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
1767 4014 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
1768 4015 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
1769 4016 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
1770 4017 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
1771 4018 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
1781 4028 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
1782 4029 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
1783 4030 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
1784 4031 9.857656 ATTTGTAGGAAATGAGATGACATGTAT 57.142 29.630 0.00 0.00 0.00 2.29
1785 4032 9.685276 AATTTGTAGGAAATGAGATGACATGTA 57.315 29.630 0.00 0.00 0.00 2.29
1786 4033 8.585471 AATTTGTAGGAAATGAGATGACATGT 57.415 30.769 0.00 0.00 0.00 3.21
1787 4034 9.865321 AAAATTTGTAGGAAATGAGATGACATG 57.135 29.630 0.00 0.00 0.00 3.21
1789 4036 9.300681 AGAAAATTTGTAGGAAATGAGATGACA 57.699 29.630 0.00 0.00 0.00 3.58
1798 4045 9.573133 CGCAGAAATAGAAAATTTGTAGGAAAT 57.427 29.630 0.00 0.00 0.00 2.17
1799 4046 8.788806 TCGCAGAAATAGAAAATTTGTAGGAAA 58.211 29.630 0.00 0.00 0.00 3.13
1800 4047 8.330466 TCGCAGAAATAGAAAATTTGTAGGAA 57.670 30.769 0.00 0.00 0.00 3.36
1801 4048 7.915293 TCGCAGAAATAGAAAATTTGTAGGA 57.085 32.000 0.00 0.00 0.00 2.94
1805 4052 9.736023 GGATTATCGCAGAAATAGAAAATTTGT 57.264 29.630 0.00 0.00 43.58 2.83
1806 4053 9.956720 AGGATTATCGCAGAAATAGAAAATTTG 57.043 29.630 0.00 0.00 43.58 2.32
1810 4057 9.436957 GGATAGGATTATCGCAGAAATAGAAAA 57.563 33.333 0.00 0.00 43.58 2.29
1811 4058 8.816894 AGGATAGGATTATCGCAGAAATAGAAA 58.183 33.333 0.00 0.00 43.58 2.52
1812 4059 8.367660 AGGATAGGATTATCGCAGAAATAGAA 57.632 34.615 0.00 0.00 43.58 2.10
1813 4060 7.962995 AGGATAGGATTATCGCAGAAATAGA 57.037 36.000 0.00 0.00 43.58 1.98
1815 4062 9.871238 GTTAAGGATAGGATTATCGCAGAAATA 57.129 33.333 0.00 0.00 43.58 1.40
1816 4063 7.545965 CGTTAAGGATAGGATTATCGCAGAAAT 59.454 37.037 0.00 0.00 43.58 2.17
1817 4064 6.866770 CGTTAAGGATAGGATTATCGCAGAAA 59.133 38.462 0.00 0.00 43.58 2.52
1818 4065 6.015688 ACGTTAAGGATAGGATTATCGCAGAA 60.016 38.462 1.43 0.00 43.58 3.02
1819 4066 5.475909 ACGTTAAGGATAGGATTATCGCAGA 59.524 40.000 1.43 0.00 45.75 4.26
1820 4067 5.573282 CACGTTAAGGATAGGATTATCGCAG 59.427 44.000 1.43 0.00 37.20 5.18
1821 4068 5.010314 ACACGTTAAGGATAGGATTATCGCA 59.990 40.000 1.43 0.00 37.20 5.10
1822 4069 5.345202 CACACGTTAAGGATAGGATTATCGC 59.655 44.000 1.43 0.00 37.20 4.58
1823 4070 5.345202 GCACACGTTAAGGATAGGATTATCG 59.655 44.000 1.43 0.00 37.20 2.92
1824 4071 6.220930 TGCACACGTTAAGGATAGGATTATC 58.779 40.000 1.43 0.00 35.87 1.75
1825 4072 6.169557 TGCACACGTTAAGGATAGGATTAT 57.830 37.500 1.43 0.00 0.00 1.28
1826 4073 5.601583 TGCACACGTTAAGGATAGGATTA 57.398 39.130 1.43 0.00 0.00 1.75
1827 4074 4.481368 TGCACACGTTAAGGATAGGATT 57.519 40.909 1.43 0.00 0.00 3.01
1828 4075 4.100963 TGATGCACACGTTAAGGATAGGAT 59.899 41.667 1.43 0.00 0.00 3.24
1829 4076 3.449377 TGATGCACACGTTAAGGATAGGA 59.551 43.478 1.43 0.00 0.00 2.94
1830 4077 3.792401 TGATGCACACGTTAAGGATAGG 58.208 45.455 1.43 0.00 0.00 2.57
1831 4078 5.794687 TTTGATGCACACGTTAAGGATAG 57.205 39.130 1.43 0.00 0.00 2.08
1832 4079 5.123186 CCTTTTGATGCACACGTTAAGGATA 59.877 40.000 1.43 0.00 0.00 2.59
1833 4080 4.082787 CCTTTTGATGCACACGTTAAGGAT 60.083 41.667 1.43 0.00 0.00 3.24
1834 4081 3.252215 CCTTTTGATGCACACGTTAAGGA 59.748 43.478 1.43 0.00 0.00 3.36
1835 4082 3.564511 CCTTTTGATGCACACGTTAAGG 58.435 45.455 0.00 0.00 0.00 2.69
1836 4083 3.564511 CCCTTTTGATGCACACGTTAAG 58.435 45.455 0.00 0.00 0.00 1.85
1853 4100 4.087892 ATGCGCGAGTGAGCCCTT 62.088 61.111 12.10 0.00 40.58 3.95
1854 4101 4.827087 CATGCGCGAGTGAGCCCT 62.827 66.667 12.10 0.00 40.58 5.19
1861 4108 3.197790 GACATGGCATGCGCGAGT 61.198 61.111 26.70 6.55 39.92 4.18
1875 4122 0.396435 ATTGTGTTCCTCTGCCGACA 59.604 50.000 0.00 0.00 0.00 4.35
1883 4130 6.920210 CCTCTTTTCTTTTCATTGTGTTCCTC 59.080 38.462 0.00 0.00 0.00 3.71
1893 4140 6.805713 TCGCTTTTTCCTCTTTTCTTTTCAT 58.194 32.000 0.00 0.00 0.00 2.57
1903 4150 1.264288 CTGCGTTCGCTTTTTCCTCTT 59.736 47.619 17.63 0.00 0.00 2.85
1920 4167 2.099062 CAACCAATCTCGCGCTGC 59.901 61.111 5.56 0.00 0.00 5.25
1922 4169 0.807667 CTAGCAACCAATCTCGCGCT 60.808 55.000 5.56 0.00 0.00 5.92
1966 4213 4.770010 ACGTTCTCTCTCTTTCTTCCAGAT 59.230 41.667 0.00 0.00 0.00 2.90
2006 4253 1.002544 GTGACTTGAGAGAAGGGGTGG 59.997 57.143 0.00 0.00 0.00 4.61
2020 4267 0.249911 GGAGAGGTTGCGTGTGACTT 60.250 55.000 0.00 0.00 0.00 3.01
2025 4272 0.250338 GGAAAGGAGAGGTTGCGTGT 60.250 55.000 0.00 0.00 0.00 4.49
2045 4292 5.468540 TGAAAAACGAGAGAGATTGGAGA 57.531 39.130 0.00 0.00 0.00 3.71
2055 4302 4.641954 CCGATGTGAATGAAAAACGAGAG 58.358 43.478 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.