Multiple sequence alignment - TraesCS3A01G398800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G398800 chr3A 100.000 2504 0 0 1 2504 645633540 645636043 0.000000e+00 4625.0
1 TraesCS3A01G398800 chr3A 98.374 123 2 0 1 123 476148506 476148384 1.510000e-52 217.0
2 TraesCS3A01G398800 chr3A 90.977 133 11 1 394 525 58825578 58825446 7.120000e-41 178.0
3 TraesCS3A01G398800 chr3A 84.746 177 22 4 352 525 714296479 714296653 3.310000e-39 172.0
4 TraesCS3A01G398800 chr3B 92.632 1045 32 21 723 1724 669950646 669951688 0.000000e+00 1461.0
5 TraesCS3A01G398800 chr3B 83.465 381 56 6 157 535 78566225 78566600 5.130000e-92 348.0
6 TraesCS3A01G398800 chr3B 83.598 378 54 7 157 532 78566839 78567210 5.130000e-92 348.0
7 TraesCS3A01G398800 chr3B 82.064 407 55 12 129 533 78552220 78552610 5.160000e-87 331.0
8 TraesCS3A01G398800 chr3B 99.187 123 1 0 1 123 14546359 14546481 3.240000e-54 222.0
9 TraesCS3A01G398800 chr3D 91.755 1043 48 13 705 1720 508072228 508073259 0.000000e+00 1415.0
10 TraesCS3A01G398800 chr3D 85.642 397 28 9 2118 2504 508073701 508074078 8.400000e-105 390.0
11 TraesCS3A01G398800 chr3D 84.259 108 7 4 1984 2085 508073381 508073484 2.050000e-16 97.1
12 TraesCS3A01G398800 chr1D 82.380 437 74 3 1010 1445 418261557 418261991 6.540000e-101 377.0
13 TraesCS3A01G398800 chr1A 82.547 424 72 2 1023 1445 515651058 515651480 3.040000e-99 372.0
14 TraesCS3A01G398800 chr1A 92.683 41 2 1 2455 2495 8723343 8723304 9.670000e-05 58.4
15 TraesCS3A01G398800 chr5A 99.194 124 1 0 1 124 398686260 398686137 9.010000e-55 224.0
16 TraesCS3A01G398800 chr5A 92.683 41 2 1 2455 2495 52424046 52424007 9.670000e-05 58.4
17 TraesCS3A01G398800 chr1B 99.187 123 1 0 1 123 558927332 558927454 3.240000e-54 222.0
18 TraesCS3A01G398800 chr4B 99.174 121 1 0 1 121 115387168 115387288 4.190000e-53 219.0
19 TraesCS3A01G398800 chr2A 99.174 121 1 0 1 121 120677745 120677865 4.190000e-53 219.0
20 TraesCS3A01G398800 chr2A 98.374 123 2 0 1 123 746768376 746768498 1.510000e-52 217.0
21 TraesCS3A01G398800 chr2A 91.489 47 2 2 2451 2496 46834115 46834070 2.080000e-06 63.9
22 TraesCS3A01G398800 chr7B 98.374 123 2 0 1 123 726305936 726305814 1.510000e-52 217.0
23 TraesCS3A01G398800 chrUn 98.361 122 2 0 1 122 306831037 306830916 5.420000e-52 215.0
24 TraesCS3A01G398800 chr5B 81.893 243 41 3 291 531 493633387 493633628 4.220000e-48 202.0
25 TraesCS3A01G398800 chr5B 82.407 216 31 5 315 526 208703628 208703416 5.500000e-42 182.0
26 TraesCS3A01G398800 chr5B 79.741 232 37 7 302 528 420575849 420576075 2.580000e-35 159.0
27 TraesCS3A01G398800 chr2D 83.889 180 20 8 352 526 13619091 13618916 1.990000e-36 163.0
28 TraesCS3A01G398800 chr2D 96.970 33 0 1 2459 2491 445703289 445703258 1.000000e-03 54.7
29 TraesCS3A01G398800 chr7D 92.683 41 2 1 2455 2495 6783958 6783919 9.670000e-05 58.4
30 TraesCS3A01G398800 chr6D 94.595 37 1 1 2455 2491 306594928 306594963 3.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G398800 chr3A 645633540 645636043 2503 False 4625.000000 4625 100.000000 1 2504 1 chr3A.!!$F1 2503
1 TraesCS3A01G398800 chr3B 669950646 669951688 1042 False 1461.000000 1461 92.632000 723 1724 1 chr3B.!!$F3 1001
2 TraesCS3A01G398800 chr3B 78566225 78567210 985 False 348.000000 348 83.531500 157 535 2 chr3B.!!$F4 378
3 TraesCS3A01G398800 chr3D 508072228 508074078 1850 False 634.033333 1415 87.218667 705 2504 3 chr3D.!!$F1 1799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.038251 AGCTTCGCGTGATTGTCTCA 60.038 50.0 5.77 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2321 0.60864 AGTACACCCTAGCACACAGC 59.391 55.0 0.0 0.0 46.19 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.419762 AGTTTGAATTTGGGGGTTGGC 59.580 47.619 0.00 0.00 0.00 4.52
23 24 0.767998 TTTGAATTTGGGGGTTGGCC 59.232 50.000 0.00 0.00 0.00 5.36
24 25 1.476007 TTGAATTTGGGGGTTGGCCG 61.476 55.000 0.00 0.00 34.97 6.13
25 26 3.309436 GAATTTGGGGGTTGGCCGC 62.309 63.158 0.00 0.00 45.93 6.53
31 32 2.912025 GGGGTTGGCCGCCATATG 60.912 66.667 14.30 0.00 45.40 1.78
32 33 2.123897 GGGTTGGCCGCCATATGT 60.124 61.111 14.30 0.00 31.53 2.29
33 34 2.489275 GGGTTGGCCGCCATATGTG 61.489 63.158 14.30 0.00 31.53 3.21
46 47 4.104383 CCATATGTGGTTAGGCAATCCT 57.896 45.455 0.00 0.00 42.39 3.24
47 48 3.822735 CCATATGTGGTTAGGCAATCCTG 59.177 47.826 0.00 0.00 40.97 3.86
48 49 2.442236 ATGTGGTTAGGCAATCCTGG 57.558 50.000 0.00 0.00 44.08 4.45
49 50 1.072266 TGTGGTTAGGCAATCCTGGT 58.928 50.000 0.00 0.00 44.08 4.00
50 51 2.270858 TGTGGTTAGGCAATCCTGGTA 58.729 47.619 0.00 0.00 44.08 3.25
51 52 2.645297 TGTGGTTAGGCAATCCTGGTAA 59.355 45.455 0.00 0.00 44.08 2.85
52 53 3.268334 TGTGGTTAGGCAATCCTGGTAAT 59.732 43.478 0.00 0.00 44.08 1.89
53 54 3.883489 GTGGTTAGGCAATCCTGGTAATC 59.117 47.826 0.00 0.00 44.08 1.75
54 55 3.785887 TGGTTAGGCAATCCTGGTAATCT 59.214 43.478 0.00 0.00 44.08 2.40
55 56 4.229582 TGGTTAGGCAATCCTGGTAATCTT 59.770 41.667 0.00 0.00 44.08 2.40
56 57 5.201243 GGTTAGGCAATCCTGGTAATCTTT 58.799 41.667 0.00 0.00 44.08 2.52
57 58 5.299531 GGTTAGGCAATCCTGGTAATCTTTC 59.700 44.000 0.00 0.00 44.08 2.62
58 59 4.870021 AGGCAATCCTGGTAATCTTTCT 57.130 40.909 0.00 0.00 42.34 2.52
59 60 5.198602 AGGCAATCCTGGTAATCTTTCTT 57.801 39.130 0.00 0.00 42.34 2.52
60 61 5.583932 AGGCAATCCTGGTAATCTTTCTTT 58.416 37.500 0.00 0.00 42.34 2.52
61 62 6.019108 AGGCAATCCTGGTAATCTTTCTTTT 58.981 36.000 0.00 0.00 42.34 2.27
62 63 6.071165 AGGCAATCCTGGTAATCTTTCTTTTG 60.071 38.462 0.00 0.00 42.34 2.44
63 64 6.295292 GGCAATCCTGGTAATCTTTCTTTTGT 60.295 38.462 0.00 0.00 0.00 2.83
64 65 7.093945 GGCAATCCTGGTAATCTTTCTTTTGTA 60.094 37.037 0.00 0.00 0.00 2.41
65 66 7.755373 GCAATCCTGGTAATCTTTCTTTTGTAC 59.245 37.037 0.00 0.00 0.00 2.90
66 67 7.939784 ATCCTGGTAATCTTTCTTTTGTACC 57.060 36.000 0.00 0.00 33.14 3.34
67 68 7.086685 TCCTGGTAATCTTTCTTTTGTACCT 57.913 36.000 0.00 0.00 33.60 3.08
68 69 7.523415 TCCTGGTAATCTTTCTTTTGTACCTT 58.477 34.615 0.00 0.00 33.60 3.50
69 70 8.002459 TCCTGGTAATCTTTCTTTTGTACCTTT 58.998 33.333 0.00 0.00 33.60 3.11
70 71 8.082242 CCTGGTAATCTTTCTTTTGTACCTTTG 58.918 37.037 0.00 0.00 33.60 2.77
71 72 8.754991 TGGTAATCTTTCTTTTGTACCTTTGA 57.245 30.769 0.00 0.00 33.60 2.69
72 73 9.191479 TGGTAATCTTTCTTTTGTACCTTTGAA 57.809 29.630 0.00 0.00 33.60 2.69
73 74 9.459640 GGTAATCTTTCTTTTGTACCTTTGAAC 57.540 33.333 0.00 0.00 0.00 3.18
77 78 8.925161 TCTTTCTTTTGTACCTTTGAACATTG 57.075 30.769 0.00 0.00 0.00 2.82
78 79 7.978975 TCTTTCTTTTGTACCTTTGAACATTGG 59.021 33.333 0.00 0.00 0.00 3.16
79 80 5.596845 TCTTTTGTACCTTTGAACATTGGC 58.403 37.500 0.00 0.00 0.00 4.52
80 81 5.127845 TCTTTTGTACCTTTGAACATTGGCA 59.872 36.000 0.00 0.00 0.00 4.92
81 82 4.314740 TTGTACCTTTGAACATTGGCAC 57.685 40.909 0.00 0.00 0.00 5.01
82 83 3.291584 TGTACCTTTGAACATTGGCACA 58.708 40.909 0.00 0.00 0.00 4.57
99 100 5.457140 TGGCACAAGTTAAATAAAGCTTCG 58.543 37.500 0.00 0.00 31.92 3.79
100 101 4.323602 GGCACAAGTTAAATAAAGCTTCGC 59.676 41.667 0.00 0.00 0.00 4.70
101 102 4.029087 GCACAAGTTAAATAAAGCTTCGCG 59.971 41.667 0.00 0.00 0.00 5.87
102 103 5.144359 CACAAGTTAAATAAAGCTTCGCGT 58.856 37.500 5.77 0.00 0.00 6.01
103 104 5.058008 CACAAGTTAAATAAAGCTTCGCGTG 59.942 40.000 5.77 1.17 0.00 5.34
104 105 5.049954 ACAAGTTAAATAAAGCTTCGCGTGA 60.050 36.000 5.77 0.00 0.00 4.35
105 106 5.796350 AGTTAAATAAAGCTTCGCGTGAT 57.204 34.783 5.77 0.00 0.00 3.06
106 107 6.178239 AGTTAAATAAAGCTTCGCGTGATT 57.822 33.333 5.77 2.43 0.00 2.57
107 108 6.021596 AGTTAAATAAAGCTTCGCGTGATTG 58.978 36.000 5.77 0.00 0.00 2.67
108 109 4.419522 AAATAAAGCTTCGCGTGATTGT 57.580 36.364 5.77 0.36 0.00 2.71
109 110 3.658351 ATAAAGCTTCGCGTGATTGTC 57.342 42.857 5.77 0.00 0.00 3.18
110 111 1.512926 AAAGCTTCGCGTGATTGTCT 58.487 45.000 5.77 0.00 0.00 3.41
111 112 1.071605 AAGCTTCGCGTGATTGTCTC 58.928 50.000 5.77 0.00 0.00 3.36
112 113 0.038251 AGCTTCGCGTGATTGTCTCA 60.038 50.000 5.77 0.00 0.00 3.27
113 114 0.790207 GCTTCGCGTGATTGTCTCAA 59.210 50.000 5.77 0.00 35.07 3.02
114 115 1.194547 GCTTCGCGTGATTGTCTCAAA 59.805 47.619 5.77 0.00 35.07 2.69
115 116 2.349438 GCTTCGCGTGATTGTCTCAAAA 60.349 45.455 5.77 0.00 35.07 2.44
116 117 3.848191 GCTTCGCGTGATTGTCTCAAAAA 60.848 43.478 5.77 0.00 35.07 1.94
145 146 8.839310 AAATTGTATAGCATTCTAGCTGTAGG 57.161 34.615 0.00 0.00 46.11 3.18
146 147 6.978674 TTGTATAGCATTCTAGCTGTAGGT 57.021 37.500 0.00 0.00 46.11 3.08
147 148 6.332735 TGTATAGCATTCTAGCTGTAGGTG 57.667 41.667 0.00 0.00 46.11 4.00
148 149 2.611225 AGCATTCTAGCTGTAGGTGC 57.389 50.000 0.00 1.68 44.66 5.01
149 150 2.114616 AGCATTCTAGCTGTAGGTGCT 58.885 47.619 0.00 4.08 44.66 4.40
150 151 2.158986 AGCATTCTAGCTGTAGGTGCTG 60.159 50.000 13.21 0.00 44.66 4.41
151 152 2.159043 GCATTCTAGCTGTAGGTGCTGA 60.159 50.000 0.00 0.00 41.32 4.26
152 153 3.715495 CATTCTAGCTGTAGGTGCTGAG 58.285 50.000 0.00 0.00 41.32 3.35
153 154 2.516227 TCTAGCTGTAGGTGCTGAGT 57.484 50.000 0.00 0.00 41.32 3.41
154 155 2.808919 TCTAGCTGTAGGTGCTGAGTT 58.191 47.619 0.00 0.00 41.32 3.01
155 156 3.165875 TCTAGCTGTAGGTGCTGAGTTT 58.834 45.455 0.00 0.00 41.32 2.66
161 162 1.071699 GTAGGTGCTGAGTTTGACCCA 59.928 52.381 0.00 0.00 0.00 4.51
162 163 0.773644 AGGTGCTGAGTTTGACCCAT 59.226 50.000 0.00 0.00 0.00 4.00
168 169 2.424956 GCTGAGTTTGACCCATGGATTC 59.575 50.000 15.22 9.91 0.00 2.52
172 173 3.633986 GAGTTTGACCCATGGATTCCATC 59.366 47.826 15.22 6.17 43.15 3.51
177 178 4.686891 TGACCCATGGATTCCATCTTTTT 58.313 39.130 15.22 0.00 43.15 1.94
180 181 3.068590 CCCATGGATTCCATCTTTTTCCG 59.931 47.826 15.22 2.14 43.15 4.30
181 182 3.953612 CCATGGATTCCATCTTTTTCCGA 59.046 43.478 15.50 0.00 43.15 4.55
189 191 9.599866 GGATTCCATCTTTTTCCGATTAATTTT 57.400 29.630 0.00 0.00 0.00 1.82
193 195 8.757877 TCCATCTTTTTCCGATTAATTTTCCAT 58.242 29.630 0.00 0.00 0.00 3.41
197 199 9.863845 TCTTTTTCCGATTAATTTTCCATTACC 57.136 29.630 0.00 0.00 0.00 2.85
208 210 0.616395 TCCATTACCGACAGCTGGGA 60.616 55.000 19.93 9.33 0.00 4.37
212 214 3.533079 TACCGACAGCTGGGACCCA 62.533 63.158 19.93 14.08 0.00 4.51
226 228 2.119495 GGACCCATGTGTCATAGAGGT 58.881 52.381 10.59 0.00 36.97 3.85
228 230 2.766263 GACCCATGTGTCATAGAGGTGA 59.234 50.000 3.18 0.00 35.29 4.02
230 232 3.587061 ACCCATGTGTCATAGAGGTGAAA 59.413 43.478 0.00 0.00 0.00 2.69
259 261 1.269723 TGCCTTCTGACACGTAGACAG 59.730 52.381 8.77 8.77 0.00 3.51
262 264 1.202582 CTTCTGACACGTAGACAGGGG 59.797 57.143 13.19 5.73 33.19 4.79
263 265 1.215647 CTGACACGTAGACAGGGGC 59.784 63.158 0.00 0.00 0.00 5.80
340 342 0.390472 GTGTTCCTCTCTGCCTTCCG 60.390 60.000 0.00 0.00 0.00 4.30
349 351 3.997064 CTGCCTTCCGGTCGCTGAG 62.997 68.421 0.00 0.00 0.00 3.35
378 381 2.740826 GACACGCTGGCGCCTTAA 60.741 61.111 29.70 6.34 44.19 1.85
383 386 2.740714 CGCTGGCGCCTTAAGTCAC 61.741 63.158 29.70 6.75 0.00 3.67
384 387 1.376037 GCTGGCGCCTTAAGTCACT 60.376 57.895 29.70 0.00 0.00 3.41
394 397 4.201871 CGCCTTAAGTCACTGTTGTTTTCA 60.202 41.667 0.97 0.00 0.00 2.69
403 406 7.425606 AGTCACTGTTGTTTTCATATCAAACC 58.574 34.615 5.09 0.00 33.83 3.27
429 432 3.122323 ACCGTATTTGCACGCCCG 61.122 61.111 0.00 0.00 40.59 6.13
433 436 2.106683 GTATTTGCACGCCCGAGCT 61.107 57.895 11.05 0.00 36.60 4.09
439 442 2.740714 GCACGCCCGAGCTAAGTTG 61.741 63.158 2.92 0.00 36.60 3.16
450 453 2.618709 GAGCTAAGTTGTTGCACCAGTT 59.381 45.455 0.00 0.00 0.00 3.16
455 458 5.278266 GCTAAGTTGTTGCACCAGTTCAATA 60.278 40.000 0.00 0.00 0.00 1.90
460 463 6.658816 AGTTGTTGCACCAGTTCAATATATGA 59.341 34.615 0.00 0.00 35.85 2.15
493 496 1.944032 ACTAAAGTGACCGTTTGCGT 58.056 45.000 0.00 0.00 36.15 5.24
503 506 2.540931 GACCGTTTGCGTCAAGTTCTAA 59.459 45.455 0.00 0.00 36.15 2.10
509 512 2.206750 TGCGTCAAGTTCTAACACCAC 58.793 47.619 0.00 0.00 0.00 4.16
512 515 2.544277 CGTCAAGTTCTAACACCACCGA 60.544 50.000 0.00 0.00 0.00 4.69
520 523 5.642063 AGTTCTAACACCACCGATGTAATTG 59.358 40.000 0.00 0.00 0.00 2.32
522 525 5.172934 TCTAACACCACCGATGTAATTGAC 58.827 41.667 0.00 0.00 0.00 3.18
524 527 3.596214 ACACCACCGATGTAATTGACTC 58.404 45.455 0.00 0.00 0.00 3.36
551 554 6.783708 TTTTTATAACCGAAATGGGCTCAT 57.216 33.333 0.00 0.00 44.64 2.90
552 555 7.883391 TTTTTATAACCGAAATGGGCTCATA 57.117 32.000 0.00 0.00 44.64 2.15
553 556 7.504924 TTTTATAACCGAAATGGGCTCATAG 57.495 36.000 0.00 0.00 44.64 2.23
554 557 4.706842 ATAACCGAAATGGGCTCATAGT 57.293 40.909 0.00 0.00 44.64 2.12
555 558 3.366052 AACCGAAATGGGCTCATAGTT 57.634 42.857 0.00 0.00 44.64 2.24
556 559 4.497291 AACCGAAATGGGCTCATAGTTA 57.503 40.909 0.00 0.00 44.64 2.24
557 560 4.706842 ACCGAAATGGGCTCATAGTTAT 57.293 40.909 0.00 0.00 44.64 1.89
558 561 4.642429 ACCGAAATGGGCTCATAGTTATC 58.358 43.478 0.00 0.00 44.64 1.75
559 562 4.102524 ACCGAAATGGGCTCATAGTTATCA 59.897 41.667 0.00 0.00 44.64 2.15
560 563 5.221925 ACCGAAATGGGCTCATAGTTATCAT 60.222 40.000 0.00 0.00 44.64 2.45
561 564 6.013725 ACCGAAATGGGCTCATAGTTATCATA 60.014 38.462 0.00 0.00 44.64 2.15
562 565 6.313905 CCGAAATGGGCTCATAGTTATCATAC 59.686 42.308 0.00 0.00 32.44 2.39
563 566 7.099764 CGAAATGGGCTCATAGTTATCATACT 58.900 38.462 0.00 0.00 32.44 2.12
564 567 7.604164 CGAAATGGGCTCATAGTTATCATACTT 59.396 37.037 0.00 0.00 32.44 2.24
565 568 8.627208 AAATGGGCTCATAGTTATCATACTTG 57.373 34.615 0.00 0.00 32.44 3.16
566 569 6.994421 TGGGCTCATAGTTATCATACTTGA 57.006 37.500 0.00 0.00 36.00 3.02
567 570 7.373617 TGGGCTCATAGTTATCATACTTGAA 57.626 36.000 0.00 0.00 34.96 2.69
568 571 7.977818 TGGGCTCATAGTTATCATACTTGAAT 58.022 34.615 0.00 0.00 34.96 2.57
569 572 8.439971 TGGGCTCATAGTTATCATACTTGAATT 58.560 33.333 0.00 0.00 34.96 2.17
570 573 8.725148 GGGCTCATAGTTATCATACTTGAATTG 58.275 37.037 0.00 0.00 34.96 2.32
571 574 9.277783 GGCTCATAGTTATCATACTTGAATTGT 57.722 33.333 0.00 0.00 34.96 2.71
577 580 8.498054 AGTTATCATACTTGAATTGTGGAGTG 57.502 34.615 0.00 0.00 34.96 3.51
578 581 8.103305 AGTTATCATACTTGAATTGTGGAGTGT 58.897 33.333 0.00 0.00 34.96 3.55
579 582 6.748333 ATCATACTTGAATTGTGGAGTGTG 57.252 37.500 0.00 0.00 34.96 3.82
580 583 4.455533 TCATACTTGAATTGTGGAGTGTGC 59.544 41.667 0.00 0.00 33.11 4.57
581 584 2.936202 ACTTGAATTGTGGAGTGTGCT 58.064 42.857 0.00 0.00 0.00 4.40
582 585 3.290710 ACTTGAATTGTGGAGTGTGCTT 58.709 40.909 0.00 0.00 0.00 3.91
583 586 3.701040 ACTTGAATTGTGGAGTGTGCTTT 59.299 39.130 0.00 0.00 0.00 3.51
584 587 4.887071 ACTTGAATTGTGGAGTGTGCTTTA 59.113 37.500 0.00 0.00 0.00 1.85
585 588 5.009010 ACTTGAATTGTGGAGTGTGCTTTAG 59.991 40.000 0.00 0.00 0.00 1.85
586 589 4.713553 TGAATTGTGGAGTGTGCTTTAGA 58.286 39.130 0.00 0.00 0.00 2.10
587 590 5.129634 TGAATTGTGGAGTGTGCTTTAGAA 58.870 37.500 0.00 0.00 0.00 2.10
588 591 5.592282 TGAATTGTGGAGTGTGCTTTAGAAA 59.408 36.000 0.00 0.00 0.00 2.52
589 592 6.265196 TGAATTGTGGAGTGTGCTTTAGAAAT 59.735 34.615 0.00 0.00 0.00 2.17
590 593 5.437289 TTGTGGAGTGTGCTTTAGAAATG 57.563 39.130 0.00 0.00 0.00 2.32
591 594 4.713553 TGTGGAGTGTGCTTTAGAAATGA 58.286 39.130 0.00 0.00 0.00 2.57
592 595 5.129634 TGTGGAGTGTGCTTTAGAAATGAA 58.870 37.500 0.00 0.00 0.00 2.57
593 596 5.769662 TGTGGAGTGTGCTTTAGAAATGAAT 59.230 36.000 0.00 0.00 0.00 2.57
594 597 6.265196 TGTGGAGTGTGCTTTAGAAATGAATT 59.735 34.615 0.00 0.00 0.00 2.17
595 598 7.446931 TGTGGAGTGTGCTTTAGAAATGAATTA 59.553 33.333 0.00 0.00 0.00 1.40
596 599 8.296713 GTGGAGTGTGCTTTAGAAATGAATTAA 58.703 33.333 0.00 0.00 0.00 1.40
597 600 9.023962 TGGAGTGTGCTTTAGAAATGAATTAAT 57.976 29.630 0.00 0.00 0.00 1.40
598 601 9.294030 GGAGTGTGCTTTAGAAATGAATTAATG 57.706 33.333 0.00 0.00 0.00 1.90
600 603 9.846248 AGTGTGCTTTAGAAATGAATTAATGAC 57.154 29.630 0.00 0.00 0.00 3.06
601 604 8.788813 GTGTGCTTTAGAAATGAATTAATGACG 58.211 33.333 0.00 0.00 0.00 4.35
602 605 8.511321 TGTGCTTTAGAAATGAATTAATGACGT 58.489 29.630 0.00 0.00 0.00 4.34
603 606 9.000018 GTGCTTTAGAAATGAATTAATGACGTC 58.000 33.333 9.11 9.11 0.00 4.34
604 607 8.946085 TGCTTTAGAAATGAATTAATGACGTCT 58.054 29.630 17.92 0.00 0.00 4.18
605 608 9.774742 GCTTTAGAAATGAATTAATGACGTCTT 57.225 29.630 17.92 7.74 0.00 3.01
620 623 8.452989 AATGACGTCTTCAATTTATTTTCTGC 57.547 30.769 17.92 0.00 37.92 4.26
621 624 6.378582 TGACGTCTTCAATTTATTTTCTGCC 58.621 36.000 17.92 0.00 0.00 4.85
622 625 6.016693 TGACGTCTTCAATTTATTTTCTGCCA 60.017 34.615 17.92 0.00 0.00 4.92
623 626 6.744112 ACGTCTTCAATTTATTTTCTGCCAA 58.256 32.000 0.00 0.00 0.00 4.52
624 627 7.206687 ACGTCTTCAATTTATTTTCTGCCAAA 58.793 30.769 0.00 0.00 0.00 3.28
625 628 7.872483 ACGTCTTCAATTTATTTTCTGCCAAAT 59.128 29.630 0.00 0.00 0.00 2.32
626 629 8.711457 CGTCTTCAATTTATTTTCTGCCAAATT 58.289 29.630 0.00 0.00 32.29 1.82
627 630 9.815936 GTCTTCAATTTATTTTCTGCCAAATTG 57.184 29.630 10.78 10.78 44.23 2.32
639 642 7.903995 TTCTGCCAAATTGAATAAATTCACC 57.096 32.000 4.89 0.00 45.63 4.02
640 643 7.002250 TCTGCCAAATTGAATAAATTCACCA 57.998 32.000 4.89 0.00 45.63 4.17
641 644 7.622713 TCTGCCAAATTGAATAAATTCACCAT 58.377 30.769 4.89 0.00 45.63 3.55
642 645 8.756927 TCTGCCAAATTGAATAAATTCACCATA 58.243 29.630 4.89 0.00 45.63 2.74
643 646 9.381033 CTGCCAAATTGAATAAATTCACCATAA 57.619 29.630 4.89 0.00 45.63 1.90
644 647 9.902684 TGCCAAATTGAATAAATTCACCATAAT 57.097 25.926 4.89 0.00 45.63 1.28
675 678 6.702716 CCTTAAAAAGGGGCGTATTAATGA 57.297 37.500 0.00 0.00 45.27 2.57
676 679 7.102847 CCTTAAAAAGGGGCGTATTAATGAA 57.897 36.000 0.00 0.00 45.27 2.57
677 680 7.722363 CCTTAAAAAGGGGCGTATTAATGAAT 58.278 34.615 0.00 0.00 45.27 2.57
678 681 8.852135 CCTTAAAAAGGGGCGTATTAATGAATA 58.148 33.333 0.00 0.00 45.27 1.75
765 768 4.106925 CCACTGGCCAGGCTCTCC 62.107 72.222 35.42 0.00 0.00 3.71
957 1263 2.695147 CCACCAAGCAAAGAAAACCTCT 59.305 45.455 0.00 0.00 35.13 3.69
1107 1420 3.213402 CTCTCCCTCCGCCTCGTC 61.213 72.222 0.00 0.00 0.00 4.20
1113 1426 4.271816 CTCCGCCTCGTCCCATCG 62.272 72.222 0.00 0.00 0.00 3.84
1452 1771 3.418068 GACGAGGACGACGACGGT 61.418 66.667 12.58 0.00 44.46 4.83
1534 1853 2.124983 GCGCTCCCTGCATCTTCA 60.125 61.111 0.00 0.00 43.06 3.02
1672 2016 7.310609 AAGGCAAATGTATATTGCTTTTGACCT 60.311 33.333 10.63 15.77 46.76 3.85
1717 2062 8.602472 TTTATATTGCTTTGGATTTGGGTACT 57.398 30.769 0.00 0.00 0.00 2.73
1718 2063 8.602472 TTATATTGCTTTGGATTTGGGTACTT 57.398 30.769 0.00 0.00 0.00 2.24
1719 2064 4.599047 TTGCTTTGGATTTGGGTACTTG 57.401 40.909 0.00 0.00 0.00 3.16
1720 2065 2.896685 TGCTTTGGATTTGGGTACTTGG 59.103 45.455 0.00 0.00 0.00 3.61
1721 2066 2.897326 GCTTTGGATTTGGGTACTTGGT 59.103 45.455 0.00 0.00 0.00 3.67
1722 2067 3.323691 GCTTTGGATTTGGGTACTTGGTT 59.676 43.478 0.00 0.00 0.00 3.67
1723 2068 4.799255 GCTTTGGATTTGGGTACTTGGTTG 60.799 45.833 0.00 0.00 0.00 3.77
1724 2069 3.603965 TGGATTTGGGTACTTGGTTGT 57.396 42.857 0.00 0.00 0.00 3.32
1725 2070 4.726035 TGGATTTGGGTACTTGGTTGTA 57.274 40.909 0.00 0.00 0.00 2.41
1726 2071 4.400120 TGGATTTGGGTACTTGGTTGTAC 58.600 43.478 0.00 0.00 41.31 2.90
1727 2072 4.105057 TGGATTTGGGTACTTGGTTGTACT 59.895 41.667 0.00 0.00 41.64 2.73
1728 2073 4.698780 GGATTTGGGTACTTGGTTGTACTC 59.301 45.833 0.00 0.00 42.53 2.59
1729 2074 3.775261 TTGGGTACTTGGTTGTACTCC 57.225 47.619 2.75 0.00 41.77 3.85
1730 2075 1.980036 TGGGTACTTGGTTGTACTCCC 59.020 52.381 2.75 0.00 41.77 4.30
1731 2076 2.263545 GGGTACTTGGTTGTACTCCCT 58.736 52.381 0.00 0.00 41.64 4.20
1732 2077 2.641321 GGGTACTTGGTTGTACTCCCTT 59.359 50.000 0.00 0.00 41.64 3.95
1733 2078 3.307269 GGGTACTTGGTTGTACTCCCTTC 60.307 52.174 0.00 0.00 41.64 3.46
1734 2079 3.325716 GGTACTTGGTTGTACTCCCTTCA 59.674 47.826 0.00 0.00 41.64 3.02
1735 2080 4.202388 GGTACTTGGTTGTACTCCCTTCAA 60.202 45.833 0.00 0.00 41.64 2.69
1736 2081 4.724279 ACTTGGTTGTACTCCCTTCAAT 57.276 40.909 0.00 0.00 0.00 2.57
1737 2082 5.061721 ACTTGGTTGTACTCCCTTCAATT 57.938 39.130 0.00 0.00 0.00 2.32
1738 2083 5.454966 ACTTGGTTGTACTCCCTTCAATTT 58.545 37.500 0.00 0.00 0.00 1.82
1739 2084 5.535030 ACTTGGTTGTACTCCCTTCAATTTC 59.465 40.000 0.00 0.00 0.00 2.17
1740 2085 5.055265 TGGTTGTACTCCCTTCAATTTCA 57.945 39.130 0.00 0.00 0.00 2.69
1741 2086 5.450453 TGGTTGTACTCCCTTCAATTTCAA 58.550 37.500 0.00 0.00 0.00 2.69
1742 2087 5.894393 TGGTTGTACTCCCTTCAATTTCAAA 59.106 36.000 0.00 0.00 0.00 2.69
1743 2088 6.381420 TGGTTGTACTCCCTTCAATTTCAAAA 59.619 34.615 0.00 0.00 0.00 2.44
1744 2089 7.070571 TGGTTGTACTCCCTTCAATTTCAAAAT 59.929 33.333 0.00 0.00 0.00 1.82
1745 2090 8.581578 GGTTGTACTCCCTTCAATTTCAAAATA 58.418 33.333 0.00 0.00 0.00 1.40
1746 2091 9.626045 GTTGTACTCCCTTCAATTTCAAAATAG 57.374 33.333 0.00 0.00 0.00 1.73
1747 2092 9.581289 TTGTACTCCCTTCAATTTCAAAATAGA 57.419 29.630 0.00 0.00 0.00 1.98
1748 2093 9.753674 TGTACTCCCTTCAATTTCAAAATAGAT 57.246 29.630 0.00 0.00 0.00 1.98
1750 2095 8.884124 ACTCCCTTCAATTTCAAAATAGATGA 57.116 30.769 0.00 0.00 0.00 2.92
1751 2096 8.743714 ACTCCCTTCAATTTCAAAATAGATGAC 58.256 33.333 0.00 0.00 0.00 3.06
1752 2097 8.884124 TCCCTTCAATTTCAAAATAGATGACT 57.116 30.769 0.00 0.00 0.00 3.41
1753 2098 8.960591 TCCCTTCAATTTCAAAATAGATGACTC 58.039 33.333 0.00 0.00 0.00 3.36
1754 2099 8.742777 CCCTTCAATTTCAAAATAGATGACTCA 58.257 33.333 0.00 0.00 0.00 3.41
1764 2109 9.778741 TCAAAATAGATGACTCAACTTGTAAGT 57.221 29.630 0.00 0.00 42.04 2.24
1765 2110 9.817365 CAAAATAGATGACTCAACTTGTAAGTG 57.183 33.333 0.00 0.00 39.66 3.16
1766 2111 7.602517 AATAGATGACTCAACTTGTAAGTGC 57.397 36.000 0.00 0.00 39.66 4.40
1767 2112 4.960938 AGATGACTCAACTTGTAAGTGCA 58.039 39.130 0.00 0.00 39.66 4.57
1768 2113 5.555017 AGATGACTCAACTTGTAAGTGCAT 58.445 37.500 0.00 0.00 39.66 3.96
1769 2114 5.410746 AGATGACTCAACTTGTAAGTGCATG 59.589 40.000 0.00 0.00 39.66 4.06
1770 2115 4.702831 TGACTCAACTTGTAAGTGCATGA 58.297 39.130 0.00 0.00 39.66 3.07
1771 2116 5.308014 TGACTCAACTTGTAAGTGCATGAT 58.692 37.500 0.00 0.00 39.66 2.45
1772 2117 5.764686 TGACTCAACTTGTAAGTGCATGATT 59.235 36.000 0.00 0.00 39.66 2.57
1773 2118 6.262944 TGACTCAACTTGTAAGTGCATGATTT 59.737 34.615 0.00 0.00 39.66 2.17
1774 2119 7.443879 TGACTCAACTTGTAAGTGCATGATTTA 59.556 33.333 0.00 0.00 39.66 1.40
1775 2120 8.340618 ACTCAACTTGTAAGTGCATGATTTAT 57.659 30.769 0.00 0.00 39.66 1.40
1776 2121 8.239314 ACTCAACTTGTAAGTGCATGATTTATG 58.761 33.333 0.00 0.00 39.66 1.90
1803 2148 8.408601 CAGCCAATTAAACTAGATTTATGCAGT 58.591 33.333 0.00 0.00 32.71 4.40
1818 2163 9.319143 GATTTATGCAGTCAATTCAGTACTACT 57.681 33.333 0.00 0.00 0.00 2.57
1821 2166 6.584185 TGCAGTCAATTCAGTACTACTACA 57.416 37.500 0.00 0.00 0.00 2.74
1822 2167 6.621613 TGCAGTCAATTCAGTACTACTACAG 58.378 40.000 0.00 0.00 0.00 2.74
1823 2168 6.208797 TGCAGTCAATTCAGTACTACTACAGT 59.791 38.462 0.00 0.00 41.62 3.55
1824 2169 7.392393 TGCAGTCAATTCAGTACTACTACAGTA 59.608 37.037 0.00 0.00 38.80 2.74
1840 2185 6.420638 ACTACAGTACAACTTGGGAAAACTT 58.579 36.000 0.00 0.00 0.00 2.66
1848 2193 5.128663 ACAACTTGGGAAAACTTGTGCTATT 59.871 36.000 0.00 0.00 0.00 1.73
1850 2195 6.233905 ACTTGGGAAAACTTGTGCTATTTT 57.766 33.333 0.00 0.00 0.00 1.82
1866 2211 5.764686 TGCTATTTTTCAGAGTTCTTGCTGA 59.235 36.000 0.00 0.00 39.24 4.26
1913 2268 2.029844 GTCTTGAGTGAGCCGGTGC 61.030 63.158 1.90 0.00 37.95 5.01
1914 2269 3.114616 CTTGAGTGAGCCGGTGCG 61.115 66.667 1.90 0.00 44.33 5.34
1944 2299 2.919228 GGCACCTATTGGTAGAAGTGG 58.081 52.381 0.00 0.00 46.60 4.00
1945 2300 2.421529 GGCACCTATTGGTAGAAGTGGG 60.422 54.545 0.00 0.00 46.60 4.61
1946 2301 2.421529 GCACCTATTGGTAGAAGTGGGG 60.422 54.545 0.00 0.00 46.60 4.96
1947 2302 3.112263 CACCTATTGGTAGAAGTGGGGA 58.888 50.000 0.00 0.00 46.60 4.81
1948 2303 3.716872 CACCTATTGGTAGAAGTGGGGAT 59.283 47.826 0.00 0.00 46.60 3.85
1949 2304 4.166144 CACCTATTGGTAGAAGTGGGGATT 59.834 45.833 0.00 0.00 46.60 3.01
1950 2305 5.368523 CACCTATTGGTAGAAGTGGGGATTA 59.631 44.000 0.00 0.00 46.60 1.75
1951 2306 5.974370 ACCTATTGGTAGAAGTGGGGATTAA 59.026 40.000 0.00 0.00 46.43 1.40
1952 2307 6.449041 ACCTATTGGTAGAAGTGGGGATTAAA 59.551 38.462 0.00 0.00 46.43 1.52
1953 2308 6.771267 CCTATTGGTAGAAGTGGGGATTAAAC 59.229 42.308 0.00 0.00 0.00 2.01
1954 2309 4.210724 TGGTAGAAGTGGGGATTAAACG 57.789 45.455 0.00 0.00 0.00 3.60
1955 2310 2.941064 GGTAGAAGTGGGGATTAAACGC 59.059 50.000 0.00 0.00 0.00 4.84
1956 2311 2.871096 AGAAGTGGGGATTAAACGCA 57.129 45.000 2.29 0.00 0.00 5.24
1957 2312 3.149005 AGAAGTGGGGATTAAACGCAA 57.851 42.857 2.29 0.00 32.38 4.85
1958 2313 2.817844 AGAAGTGGGGATTAAACGCAAC 59.182 45.455 0.00 0.00 32.38 4.17
1959 2314 2.579410 AGTGGGGATTAAACGCAACT 57.421 45.000 4.22 4.22 33.20 3.16
1960 2315 2.159382 AGTGGGGATTAAACGCAACTG 58.841 47.619 8.77 0.00 36.01 3.16
1961 2316 1.883926 GTGGGGATTAAACGCAACTGT 59.116 47.619 2.29 0.00 32.38 3.55
1962 2317 3.075884 GTGGGGATTAAACGCAACTGTA 58.924 45.455 2.29 0.00 32.38 2.74
1963 2318 3.126343 GTGGGGATTAAACGCAACTGTAG 59.874 47.826 2.29 0.00 32.38 2.74
1964 2319 3.244630 TGGGGATTAAACGCAACTGTAGT 60.245 43.478 2.29 0.00 0.00 2.73
1965 2320 3.754850 GGGGATTAAACGCAACTGTAGTT 59.245 43.478 2.29 0.00 39.12 2.24
1975 2330 2.332063 AACTGTAGTTGCTGTGTGCT 57.668 45.000 0.00 0.00 43.37 4.40
1976 2331 3.469008 AACTGTAGTTGCTGTGTGCTA 57.531 42.857 0.00 0.00 43.37 3.49
1977 2332 3.032017 ACTGTAGTTGCTGTGTGCTAG 57.968 47.619 0.00 0.00 43.37 3.42
1978 2333 2.289072 ACTGTAGTTGCTGTGTGCTAGG 60.289 50.000 0.00 0.00 43.37 3.02
1979 2334 1.001974 TGTAGTTGCTGTGTGCTAGGG 59.998 52.381 0.00 0.00 43.37 3.53
1980 2335 1.002087 GTAGTTGCTGTGTGCTAGGGT 59.998 52.381 0.00 0.00 43.37 4.34
1981 2336 0.250467 AGTTGCTGTGTGCTAGGGTG 60.250 55.000 0.00 0.00 43.37 4.61
1982 2337 0.535102 GTTGCTGTGTGCTAGGGTGT 60.535 55.000 0.00 0.00 43.37 4.16
1997 2352 2.567615 AGGGTGTACTGAACCTGCTTAG 59.432 50.000 1.28 0.00 37.85 2.18
2002 2357 0.326264 ACTGAACCTGCTTAGGCCAG 59.674 55.000 5.01 12.07 38.25 4.85
2006 2361 2.290071 TGAACCTGCTTAGGCCAGTTAC 60.290 50.000 5.01 0.00 34.37 2.50
2036 2391 1.568612 CTTCGATGCAACAGTGGCGT 61.569 55.000 0.00 0.00 0.00 5.68
2037 2392 1.840630 TTCGATGCAACAGTGGCGTG 61.841 55.000 0.00 0.00 0.00 5.34
2038 2393 2.606961 CGATGCAACAGTGGCGTGT 61.607 57.895 0.00 0.00 0.00 4.49
2039 2394 1.081906 GATGCAACAGTGGCGTGTG 60.082 57.895 0.00 0.00 0.00 3.82
2040 2395 2.462255 GATGCAACAGTGGCGTGTGG 62.462 60.000 0.00 0.00 0.00 4.17
2041 2396 4.629115 GCAACAGTGGCGTGTGGC 62.629 66.667 3.65 3.65 40.17 5.01
2042 2397 4.312231 CAACAGTGGCGTGTGGCG 62.312 66.667 0.00 0.00 44.92 5.69
2097 2609 1.940613 GGATCGAGGTAAATGCACCAC 59.059 52.381 0.00 0.00 41.40 4.16
2130 2675 0.955428 GCCACGGCTGATCACTTTGA 60.955 55.000 0.00 0.00 38.26 2.69
2137 2682 2.681848 GGCTGATCACTTTGATGTCTGG 59.318 50.000 0.00 0.00 37.20 3.86
2139 2684 3.373439 GCTGATCACTTTGATGTCTGGAC 59.627 47.826 0.00 0.00 37.20 4.02
2178 2723 5.972107 AGTGATGCATGAACTTAGCTTTT 57.028 34.783 2.46 0.00 0.00 2.27
2218 2763 0.034337 TGCCGTCTGTGGACCTTAAC 59.966 55.000 0.00 0.00 39.15 2.01
2228 2781 0.608308 GGACCTTAACTGTGGCACCC 60.608 60.000 16.26 1.29 0.00 4.61
2261 2814 4.208686 CCGTCTACTCAGCCGGCC 62.209 72.222 26.15 5.07 33.20 6.13
2266 2819 2.043349 TACTCAGCCGGCCTAGCA 60.043 61.111 26.15 8.85 0.00 3.49
2267 2820 1.457643 TACTCAGCCGGCCTAGCAT 60.458 57.895 26.15 8.37 0.00 3.79
2268 2821 1.464376 TACTCAGCCGGCCTAGCATC 61.464 60.000 26.15 0.00 0.00 3.91
2269 2822 3.855352 CTCAGCCGGCCTAGCATCG 62.855 68.421 26.15 1.34 0.00 3.84
2270 2823 4.976925 CAGCCGGCCTAGCATCGG 62.977 72.222 26.15 10.87 45.84 4.18
2273 2826 4.609018 CCGGCCTAGCATCGGGTG 62.609 72.222 0.00 0.00 40.07 4.61
2274 2827 4.609018 CGGCCTAGCATCGGGTGG 62.609 72.222 0.00 0.00 0.00 4.61
2275 2828 3.161450 GGCCTAGCATCGGGTGGA 61.161 66.667 0.00 0.00 0.00 4.02
2276 2829 2.423446 GCCTAGCATCGGGTGGAG 59.577 66.667 0.00 0.00 0.00 3.86
2277 2830 2.435693 GCCTAGCATCGGGTGGAGT 61.436 63.158 0.00 0.00 0.00 3.85
2278 2831 1.113517 GCCTAGCATCGGGTGGAGTA 61.114 60.000 0.00 0.00 0.00 2.59
2279 2832 0.962489 CCTAGCATCGGGTGGAGTAG 59.038 60.000 0.00 0.00 0.00 2.57
2280 2833 1.693627 CTAGCATCGGGTGGAGTAGT 58.306 55.000 0.00 0.00 0.00 2.73
2281 2834 1.338337 CTAGCATCGGGTGGAGTAGTG 59.662 57.143 0.00 0.00 0.00 2.74
2287 2840 1.735376 CGGGTGGAGTAGTGATCGGG 61.735 65.000 0.00 0.00 0.00 5.14
2312 2865 0.740737 GGATTGGAATTGCCGACCTG 59.259 55.000 0.00 0.00 40.66 4.00
2313 2866 0.101219 GATTGGAATTGCCGACCTGC 59.899 55.000 0.00 0.00 40.66 4.85
2334 2889 3.688272 CAGGCAATTCATGTGTTCGATC 58.312 45.455 0.00 0.00 0.00 3.69
2335 2890 2.684881 AGGCAATTCATGTGTTCGATCC 59.315 45.455 0.00 0.00 0.00 3.36
2338 2893 3.002656 GCAATTCATGTGTTCGATCCGAT 59.997 43.478 0.00 0.00 35.23 4.18
2347 2902 0.527600 TTCGATCCGATGAACGCAGG 60.528 55.000 0.00 0.00 41.07 4.85
2353 2908 0.852777 CCGATGAACGCAGGTTATCG 59.147 55.000 11.71 11.71 41.07 2.92
2363 2918 0.583438 CAGGTTATCGCGCTCCAATG 59.417 55.000 5.56 0.00 0.00 2.82
2365 2920 0.861837 GGTTATCGCGCTCCAATGAG 59.138 55.000 5.56 0.00 41.84 2.90
2379 2934 2.474526 CCAATGAGCGACGTTTCATGAC 60.475 50.000 14.74 0.00 34.43 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.263170 GCCAACCCCCAAATTCAAACTAT 59.737 43.478 0.00 0.00 0.00 2.12
1 2 2.635427 GCCAACCCCCAAATTCAAACTA 59.365 45.455 0.00 0.00 0.00 2.24
3 4 1.544537 GGCCAACCCCCAAATTCAAAC 60.545 52.381 0.00 0.00 0.00 2.93
4 5 0.767998 GGCCAACCCCCAAATTCAAA 59.232 50.000 0.00 0.00 0.00 2.69
5 6 1.476007 CGGCCAACCCCCAAATTCAA 61.476 55.000 2.24 0.00 0.00 2.69
6 7 1.910772 CGGCCAACCCCCAAATTCA 60.911 57.895 2.24 0.00 0.00 2.57
7 8 2.978000 CGGCCAACCCCCAAATTC 59.022 61.111 2.24 0.00 0.00 2.17
13 14 4.218686 ATATGGCGGCCAACCCCC 62.219 66.667 27.70 0.00 36.95 5.40
14 15 2.912025 CATATGGCGGCCAACCCC 60.912 66.667 27.70 0.00 36.95 4.95
15 16 2.123897 ACATATGGCGGCCAACCC 60.124 61.111 27.70 0.00 36.95 4.11
16 17 2.489275 CCACATATGGCGGCCAACC 61.489 63.158 27.70 3.71 39.82 3.77
17 18 3.119193 CCACATATGGCGGCCAAC 58.881 61.111 27.70 0.00 39.82 3.77
24 25 3.751893 AGGATTGCCTAACCACATATGGC 60.752 47.826 7.80 0.00 46.91 4.40
26 27 3.822735 CCAGGATTGCCTAACCACATATG 59.177 47.826 0.00 0.00 44.80 1.78
27 28 3.463329 ACCAGGATTGCCTAACCACATAT 59.537 43.478 0.00 0.00 44.80 1.78
28 29 2.849943 ACCAGGATTGCCTAACCACATA 59.150 45.455 0.00 0.00 44.80 2.29
29 30 1.640670 ACCAGGATTGCCTAACCACAT 59.359 47.619 0.00 0.00 44.80 3.21
30 31 1.072266 ACCAGGATTGCCTAACCACA 58.928 50.000 0.00 0.00 44.80 4.17
31 32 3.359695 TTACCAGGATTGCCTAACCAC 57.640 47.619 0.00 0.00 44.80 4.16
32 33 3.785887 AGATTACCAGGATTGCCTAACCA 59.214 43.478 0.00 0.00 44.80 3.67
33 34 4.439253 AGATTACCAGGATTGCCTAACC 57.561 45.455 0.00 0.00 44.80 2.85
34 35 6.122964 AGAAAGATTACCAGGATTGCCTAAC 58.877 40.000 0.00 0.00 44.80 2.34
35 36 6.327386 AGAAAGATTACCAGGATTGCCTAA 57.673 37.500 0.00 0.00 44.80 2.69
36 37 5.975988 AGAAAGATTACCAGGATTGCCTA 57.024 39.130 0.00 0.00 44.80 3.93
38 39 5.921962 AAAGAAAGATTACCAGGATTGCC 57.078 39.130 0.00 0.00 0.00 4.52
39 40 6.691508 ACAAAAGAAAGATTACCAGGATTGC 58.308 36.000 0.00 0.00 0.00 3.56
40 41 8.244113 GGTACAAAAGAAAGATTACCAGGATTG 58.756 37.037 0.00 0.00 31.10 2.67
41 42 8.170730 AGGTACAAAAGAAAGATTACCAGGATT 58.829 33.333 0.00 0.00 32.85 3.01
42 43 7.699878 AGGTACAAAAGAAAGATTACCAGGAT 58.300 34.615 0.00 0.00 32.85 3.24
43 44 7.086685 AGGTACAAAAGAAAGATTACCAGGA 57.913 36.000 0.00 0.00 32.85 3.86
44 45 7.761038 AAGGTACAAAAGAAAGATTACCAGG 57.239 36.000 0.00 0.00 32.85 4.45
45 46 8.846211 TCAAAGGTACAAAAGAAAGATTACCAG 58.154 33.333 0.00 0.00 32.85 4.00
46 47 8.754991 TCAAAGGTACAAAAGAAAGATTACCA 57.245 30.769 0.00 0.00 32.85 3.25
47 48 9.459640 GTTCAAAGGTACAAAAGAAAGATTACC 57.540 33.333 0.00 0.00 0.00 2.85
51 52 9.533253 CAATGTTCAAAGGTACAAAAGAAAGAT 57.467 29.630 0.00 0.00 0.00 2.40
52 53 7.978975 CCAATGTTCAAAGGTACAAAAGAAAGA 59.021 33.333 0.00 0.00 0.00 2.52
53 54 7.254421 GCCAATGTTCAAAGGTACAAAAGAAAG 60.254 37.037 0.00 0.00 0.00 2.62
54 55 6.536941 GCCAATGTTCAAAGGTACAAAAGAAA 59.463 34.615 0.00 0.00 0.00 2.52
55 56 6.045955 GCCAATGTTCAAAGGTACAAAAGAA 58.954 36.000 0.00 0.00 0.00 2.52
56 57 5.127845 TGCCAATGTTCAAAGGTACAAAAGA 59.872 36.000 0.00 0.00 0.00 2.52
57 58 5.234116 GTGCCAATGTTCAAAGGTACAAAAG 59.766 40.000 0.00 0.00 36.84 2.27
58 59 5.112686 GTGCCAATGTTCAAAGGTACAAAA 58.887 37.500 0.00 0.00 36.84 2.44
59 60 4.160439 TGTGCCAATGTTCAAAGGTACAAA 59.840 37.500 12.39 0.00 42.45 2.83
60 61 3.701542 TGTGCCAATGTTCAAAGGTACAA 59.298 39.130 12.39 1.89 42.45 2.41
61 62 3.291584 TGTGCCAATGTTCAAAGGTACA 58.708 40.909 11.34 11.34 43.03 2.90
62 63 4.202111 ACTTGTGCCAATGTTCAAAGGTAC 60.202 41.667 0.00 0.00 37.28 3.34
63 64 3.957497 ACTTGTGCCAATGTTCAAAGGTA 59.043 39.130 0.00 0.00 0.00 3.08
64 65 2.765699 ACTTGTGCCAATGTTCAAAGGT 59.234 40.909 0.00 0.00 0.00 3.50
65 66 3.457610 ACTTGTGCCAATGTTCAAAGG 57.542 42.857 0.00 0.00 0.00 3.11
66 67 6.900568 TTTAACTTGTGCCAATGTTCAAAG 57.099 33.333 0.00 0.00 0.00 2.77
67 68 8.948631 TTATTTAACTTGTGCCAATGTTCAAA 57.051 26.923 0.00 0.00 0.00 2.69
68 69 8.948631 TTTATTTAACTTGTGCCAATGTTCAA 57.051 26.923 0.00 0.00 0.00 2.69
69 70 7.170658 GCTTTATTTAACTTGTGCCAATGTTCA 59.829 33.333 0.00 0.00 0.00 3.18
70 71 7.384932 AGCTTTATTTAACTTGTGCCAATGTTC 59.615 33.333 0.00 0.00 0.00 3.18
71 72 7.216494 AGCTTTATTTAACTTGTGCCAATGTT 58.784 30.769 0.00 0.00 0.00 2.71
72 73 6.758254 AGCTTTATTTAACTTGTGCCAATGT 58.242 32.000 0.00 0.00 0.00 2.71
73 74 7.410728 CGAAGCTTTATTTAACTTGTGCCAATG 60.411 37.037 0.00 0.00 0.00 2.82
74 75 6.586082 CGAAGCTTTATTTAACTTGTGCCAAT 59.414 34.615 0.00 0.00 0.00 3.16
75 76 5.918011 CGAAGCTTTATTTAACTTGTGCCAA 59.082 36.000 0.00 0.00 0.00 4.52
76 77 5.457140 CGAAGCTTTATTTAACTTGTGCCA 58.543 37.500 0.00 0.00 0.00 4.92
77 78 5.992489 CGAAGCTTTATTTAACTTGTGCC 57.008 39.130 0.00 0.00 0.00 5.01
86 87 8.736499 TGAGACAATCACGCGAAGCTTTATTTA 61.736 37.037 15.93 0.00 42.85 1.40
87 88 7.993166 TGAGACAATCACGCGAAGCTTTATTT 61.993 38.462 15.93 0.00 42.85 1.40
88 89 6.588452 TGAGACAATCACGCGAAGCTTTATT 61.588 40.000 15.93 0.00 42.85 1.40
89 90 5.150809 TGAGACAATCACGCGAAGCTTTAT 61.151 41.667 15.93 0.00 42.85 1.40
90 91 3.859252 TGAGACAATCACGCGAAGCTTTA 60.859 43.478 15.93 0.00 42.85 1.85
91 92 3.122687 TGAGACAATCACGCGAAGCTTT 61.123 45.455 15.93 0.00 42.85 3.51
92 93 1.605457 TGAGACAATCACGCGAAGCTT 60.605 47.619 15.93 0.00 42.85 3.74
93 94 0.038251 TGAGACAATCACGCGAAGCT 60.038 50.000 15.93 0.00 42.85 3.74
94 95 0.790207 TTGAGACAATCACGCGAAGC 59.210 50.000 15.93 0.00 43.09 3.86
95 96 3.519908 TTTTGAGACAATCACGCGAAG 57.480 42.857 15.93 4.76 37.77 3.79
96 97 3.953874 TTTTTGAGACAATCACGCGAA 57.046 38.095 15.93 0.00 37.77 4.70
119 120 9.277783 CCTACAGCTAGAATGCTATACAATTTT 57.722 33.333 0.00 0.00 41.98 1.82
120 121 8.432805 ACCTACAGCTAGAATGCTATACAATTT 58.567 33.333 0.00 0.00 41.98 1.82
121 122 7.875041 CACCTACAGCTAGAATGCTATACAATT 59.125 37.037 0.00 0.00 41.98 2.32
122 123 7.382110 CACCTACAGCTAGAATGCTATACAAT 58.618 38.462 0.00 0.00 41.98 2.71
123 124 6.738731 GCACCTACAGCTAGAATGCTATACAA 60.739 42.308 0.00 0.00 41.98 2.41
124 125 5.279006 GCACCTACAGCTAGAATGCTATACA 60.279 44.000 0.00 0.00 41.98 2.29
125 126 5.047660 AGCACCTACAGCTAGAATGCTATAC 60.048 44.000 11.45 0.00 41.98 1.47
126 127 5.047731 CAGCACCTACAGCTAGAATGCTATA 60.048 44.000 12.31 0.00 41.98 1.31
127 128 3.900601 AGCACCTACAGCTAGAATGCTAT 59.099 43.478 11.45 0.00 41.98 2.97
128 129 3.068732 CAGCACCTACAGCTAGAATGCTA 59.931 47.826 12.31 0.00 41.98 3.49
129 130 2.114616 AGCACCTACAGCTAGAATGCT 58.885 47.619 8.60 8.60 45.18 3.79
130 131 2.159043 TCAGCACCTACAGCTAGAATGC 60.159 50.000 0.00 0.00 41.14 3.56
131 132 3.131933 ACTCAGCACCTACAGCTAGAATG 59.868 47.826 0.00 0.00 41.14 2.67
132 133 3.370104 ACTCAGCACCTACAGCTAGAAT 58.630 45.455 0.00 0.00 41.14 2.40
133 134 2.808919 ACTCAGCACCTACAGCTAGAA 58.191 47.619 0.00 0.00 41.14 2.10
134 135 2.516227 ACTCAGCACCTACAGCTAGA 57.484 50.000 0.00 0.00 41.14 2.43
135 136 3.056536 TCAAACTCAGCACCTACAGCTAG 60.057 47.826 0.00 0.00 41.14 3.42
136 137 2.897326 TCAAACTCAGCACCTACAGCTA 59.103 45.455 0.00 0.00 41.14 3.32
137 138 1.694150 TCAAACTCAGCACCTACAGCT 59.306 47.619 0.00 0.00 44.62 4.24
138 139 1.801178 GTCAAACTCAGCACCTACAGC 59.199 52.381 0.00 0.00 0.00 4.40
139 140 2.417719 GGTCAAACTCAGCACCTACAG 58.582 52.381 0.00 0.00 0.00 2.74
140 141 1.071699 GGGTCAAACTCAGCACCTACA 59.928 52.381 0.00 0.00 0.00 2.74
141 142 1.071699 TGGGTCAAACTCAGCACCTAC 59.928 52.381 0.00 0.00 0.00 3.18
142 143 1.429930 TGGGTCAAACTCAGCACCTA 58.570 50.000 0.00 0.00 0.00 3.08
143 144 0.773644 ATGGGTCAAACTCAGCACCT 59.226 50.000 0.00 0.00 28.45 4.00
144 145 0.883833 CATGGGTCAAACTCAGCACC 59.116 55.000 0.00 0.00 28.45 5.01
145 146 0.883833 CCATGGGTCAAACTCAGCAC 59.116 55.000 2.85 0.00 28.45 4.40
146 147 0.770499 TCCATGGGTCAAACTCAGCA 59.230 50.000 13.02 0.00 28.45 4.41
147 148 2.134789 ATCCATGGGTCAAACTCAGC 57.865 50.000 13.02 0.00 28.45 4.26
148 149 3.019564 GGAATCCATGGGTCAAACTCAG 58.980 50.000 13.02 0.00 28.45 3.35
149 150 2.378208 TGGAATCCATGGGTCAAACTCA 59.622 45.455 13.02 0.53 30.24 3.41
150 151 3.085952 TGGAATCCATGGGTCAAACTC 57.914 47.619 13.02 0.00 0.00 3.01
151 152 3.635591 GATGGAATCCATGGGTCAAACT 58.364 45.455 21.01 0.00 45.26 2.66
168 169 8.947055 ATGGAAAATTAATCGGAAAAAGATGG 57.053 30.769 0.00 0.00 0.00 3.51
172 173 8.803799 CGGTAATGGAAAATTAATCGGAAAAAG 58.196 33.333 0.00 0.00 0.00 2.27
177 178 6.114089 TGTCGGTAATGGAAAATTAATCGGA 58.886 36.000 0.00 0.00 0.00 4.55
180 181 6.912591 CAGCTGTCGGTAATGGAAAATTAATC 59.087 38.462 5.25 0.00 0.00 1.75
181 182 6.183360 CCAGCTGTCGGTAATGGAAAATTAAT 60.183 38.462 13.81 0.00 32.55 1.40
189 191 0.616395 TCCCAGCTGTCGGTAATGGA 60.616 55.000 13.81 6.47 32.55 3.41
193 195 2.288025 GGGTCCCAGCTGTCGGTAA 61.288 63.158 13.81 0.00 0.00 2.85
197 199 2.124983 CATGGGTCCCAGCTGTCG 60.125 66.667 17.70 1.99 36.75 4.35
208 210 2.832838 TCACCTCTATGACACATGGGT 58.167 47.619 0.00 0.00 0.00 4.51
230 232 6.084326 ACGTGTCAGAAGGCATTTTATTTT 57.916 33.333 0.00 0.00 0.00 1.82
246 248 2.632544 CGCCCCTGTCTACGTGTCA 61.633 63.158 0.00 0.00 0.00 3.58
247 249 2.181021 CGCCCCTGTCTACGTGTC 59.819 66.667 0.00 0.00 0.00 3.67
249 251 2.781595 AAAGCGCCCCTGTCTACGTG 62.782 60.000 2.29 0.00 0.00 4.49
250 252 2.108278 AAAAGCGCCCCTGTCTACGT 62.108 55.000 2.29 0.00 0.00 3.57
252 254 2.103537 TAAAAAGCGCCCCTGTCTAC 57.896 50.000 2.29 0.00 0.00 2.59
259 261 3.801114 ATTTCTCATAAAAAGCGCCCC 57.199 42.857 2.29 0.00 0.00 5.80
309 311 2.186826 GGAACACGTGTGGCTTGCT 61.187 57.895 24.16 3.82 34.19 3.91
310 312 2.117941 GAGGAACACGTGTGGCTTGC 62.118 60.000 24.16 11.92 34.19 4.01
313 315 1.115930 AGAGAGGAACACGTGTGGCT 61.116 55.000 24.16 16.37 34.19 4.75
322 324 1.975327 CGGAAGGCAGAGAGGAACA 59.025 57.895 0.00 0.00 0.00 3.18
362 365 2.742372 CTTAAGGCGCCAGCGTGT 60.742 61.111 31.54 2.66 46.35 4.49
363 366 2.740714 GACTTAAGGCGCCAGCGTG 61.741 63.158 31.54 16.50 46.35 5.34
365 368 2.434185 TGACTTAAGGCGCCAGCG 60.434 61.111 31.54 16.10 46.35 5.18
372 375 5.243426 TGAAAACAACAGTGACTTAAGGC 57.757 39.130 7.53 3.92 0.00 4.35
376 379 9.944663 GTTTGATATGAAAACAACAGTGACTTA 57.055 29.630 0.00 0.00 37.45 2.24
378 381 7.285401 AGGTTTGATATGAAAACAACAGTGACT 59.715 33.333 5.47 0.00 38.91 3.41
383 386 9.480053 AAATCAGGTTTGATATGAAAACAACAG 57.520 29.630 5.47 0.00 43.20 3.16
429 432 2.222027 ACTGGTGCAACAACTTAGCTC 58.778 47.619 5.64 0.00 39.98 4.09
433 436 6.892658 ATATTGAACTGGTGCAACAACTTA 57.107 33.333 5.64 0.00 39.98 2.24
439 442 6.128035 TGTGTCATATATTGAACTGGTGCAAC 60.128 38.462 0.00 0.00 35.70 4.17
450 453 8.478066 AGTGCTAGAACTTGTGTCATATATTGA 58.522 33.333 0.00 0.00 0.00 2.57
455 458 8.314751 ACTTTAGTGCTAGAACTTGTGTCATAT 58.685 33.333 9.19 0.00 0.00 1.78
460 463 5.753921 GTCACTTTAGTGCTAGAACTTGTGT 59.246 40.000 20.93 11.47 45.25 3.72
493 496 3.070446 ACATCGGTGGTGTTAGAACTTGA 59.930 43.478 0.00 0.00 0.00 3.02
503 506 3.007506 TGAGTCAATTACATCGGTGGTGT 59.992 43.478 0.00 0.00 0.00 4.16
534 537 4.497291 AACTATGAGCCCATTTCGGTTA 57.503 40.909 0.00 0.00 34.31 2.85
535 538 3.366052 AACTATGAGCCCATTTCGGTT 57.634 42.857 0.00 0.00 34.31 4.44
536 539 4.102524 TGATAACTATGAGCCCATTTCGGT 59.897 41.667 0.00 0.00 34.31 4.69
537 540 4.641396 TGATAACTATGAGCCCATTTCGG 58.359 43.478 0.00 0.00 34.31 4.30
538 541 7.099764 AGTATGATAACTATGAGCCCATTTCG 58.900 38.462 0.00 0.00 34.31 3.46
539 542 8.725148 CAAGTATGATAACTATGAGCCCATTTC 58.275 37.037 0.00 0.00 34.31 2.17
540 543 8.439971 TCAAGTATGATAACTATGAGCCCATTT 58.560 33.333 0.00 0.00 34.31 2.32
541 544 7.977818 TCAAGTATGATAACTATGAGCCCATT 58.022 34.615 0.00 0.00 34.31 3.16
542 545 7.559335 TCAAGTATGATAACTATGAGCCCAT 57.441 36.000 0.00 0.00 36.81 4.00
543 546 6.994421 TCAAGTATGATAACTATGAGCCCA 57.006 37.500 0.00 0.00 0.00 5.36
544 547 8.725148 CAATTCAAGTATGATAACTATGAGCCC 58.275 37.037 0.00 0.00 34.96 5.19
545 548 9.277783 ACAATTCAAGTATGATAACTATGAGCC 57.722 33.333 0.00 0.00 34.96 4.70
551 554 9.599866 CACTCCACAATTCAAGTATGATAACTA 57.400 33.333 0.00 0.00 34.96 2.24
552 555 8.103305 ACACTCCACAATTCAAGTATGATAACT 58.897 33.333 0.00 0.00 34.96 2.24
553 556 8.177663 CACACTCCACAATTCAAGTATGATAAC 58.822 37.037 0.00 0.00 34.96 1.89
554 557 7.148255 GCACACTCCACAATTCAAGTATGATAA 60.148 37.037 0.00 0.00 34.96 1.75
555 558 6.316140 GCACACTCCACAATTCAAGTATGATA 59.684 38.462 0.00 0.00 34.96 2.15
556 559 5.124457 GCACACTCCACAATTCAAGTATGAT 59.876 40.000 0.00 0.00 34.96 2.45
557 560 4.455533 GCACACTCCACAATTCAAGTATGA 59.544 41.667 0.00 0.00 0.00 2.15
558 561 4.456911 AGCACACTCCACAATTCAAGTATG 59.543 41.667 0.00 0.00 0.00 2.39
559 562 4.655963 AGCACACTCCACAATTCAAGTAT 58.344 39.130 0.00 0.00 0.00 2.12
560 563 4.085357 AGCACACTCCACAATTCAAGTA 57.915 40.909 0.00 0.00 0.00 2.24
561 564 2.936202 AGCACACTCCACAATTCAAGT 58.064 42.857 0.00 0.00 0.00 3.16
562 565 3.996150 AAGCACACTCCACAATTCAAG 57.004 42.857 0.00 0.00 0.00 3.02
563 566 5.129634 TCTAAAGCACACTCCACAATTCAA 58.870 37.500 0.00 0.00 0.00 2.69
564 567 4.713553 TCTAAAGCACACTCCACAATTCA 58.286 39.130 0.00 0.00 0.00 2.57
565 568 5.689383 TTCTAAAGCACACTCCACAATTC 57.311 39.130 0.00 0.00 0.00 2.17
566 569 6.265196 TCATTTCTAAAGCACACTCCACAATT 59.735 34.615 0.00 0.00 0.00 2.32
567 570 5.769662 TCATTTCTAAAGCACACTCCACAAT 59.230 36.000 0.00 0.00 0.00 2.71
568 571 5.129634 TCATTTCTAAAGCACACTCCACAA 58.870 37.500 0.00 0.00 0.00 3.33
569 572 4.713553 TCATTTCTAAAGCACACTCCACA 58.286 39.130 0.00 0.00 0.00 4.17
570 573 5.689383 TTCATTTCTAAAGCACACTCCAC 57.311 39.130 0.00 0.00 0.00 4.02
571 574 6.899393 AATTCATTTCTAAAGCACACTCCA 57.101 33.333 0.00 0.00 0.00 3.86
572 575 9.294030 CATTAATTCATTTCTAAAGCACACTCC 57.706 33.333 0.00 0.00 0.00 3.85
574 577 9.846248 GTCATTAATTCATTTCTAAAGCACACT 57.154 29.630 0.00 0.00 0.00 3.55
575 578 8.788813 CGTCATTAATTCATTTCTAAAGCACAC 58.211 33.333 0.00 0.00 0.00 3.82
576 579 8.511321 ACGTCATTAATTCATTTCTAAAGCACA 58.489 29.630 0.00 0.00 0.00 4.57
577 580 8.895932 ACGTCATTAATTCATTTCTAAAGCAC 57.104 30.769 0.00 0.00 0.00 4.40
578 581 8.946085 AGACGTCATTAATTCATTTCTAAAGCA 58.054 29.630 19.50 0.00 0.00 3.91
579 582 9.774742 AAGACGTCATTAATTCATTTCTAAAGC 57.225 29.630 19.50 0.00 0.00 3.51
594 597 9.554724 GCAGAAAATAAATTGAAGACGTCATTA 57.445 29.630 19.50 0.00 35.70 1.90
595 598 7.542130 GGCAGAAAATAAATTGAAGACGTCATT 59.458 33.333 19.50 9.10 35.70 2.57
596 599 7.029563 GGCAGAAAATAAATTGAAGACGTCAT 58.970 34.615 19.50 5.41 35.70 3.06
597 600 6.016693 TGGCAGAAAATAAATTGAAGACGTCA 60.017 34.615 19.50 0.00 0.00 4.35
598 601 6.378582 TGGCAGAAAATAAATTGAAGACGTC 58.621 36.000 7.70 7.70 0.00 4.34
599 602 6.325919 TGGCAGAAAATAAATTGAAGACGT 57.674 33.333 0.00 0.00 0.00 4.34
600 603 7.636259 TTTGGCAGAAAATAAATTGAAGACG 57.364 32.000 0.00 0.00 0.00 4.18
601 604 9.815936 CAATTTGGCAGAAAATAAATTGAAGAC 57.184 29.630 11.30 0.00 45.99 3.01
636 639 9.430623 CCTTTTTAAGGTAAAACCATTATGGTG 57.569 33.333 18.48 0.00 46.57 4.17
721 724 5.120363 AGTCGCCTTCTTTCGATTTTTCTAC 59.880 40.000 0.00 0.00 37.06 2.59
791 798 3.628958 GCCGTTGCTTTGCTTTGG 58.371 55.556 0.00 0.00 33.53 3.28
1173 1486 2.435059 GTGAAGGAGCCCGAGCAC 60.435 66.667 0.00 0.00 43.56 4.40
1452 1771 3.822192 CGGCGGAGGTCATCGTCA 61.822 66.667 0.00 0.00 0.00 4.35
1715 2060 4.724279 ATTGAAGGGAGTACAACCAAGT 57.276 40.909 8.35 0.00 0.00 3.16
1716 2061 5.534654 TGAAATTGAAGGGAGTACAACCAAG 59.465 40.000 8.35 0.00 0.00 3.61
1717 2062 5.450453 TGAAATTGAAGGGAGTACAACCAA 58.550 37.500 8.35 0.00 0.00 3.67
1718 2063 5.055265 TGAAATTGAAGGGAGTACAACCA 57.945 39.130 8.35 0.00 0.00 3.67
1719 2064 6.399639 TTTGAAATTGAAGGGAGTACAACC 57.600 37.500 0.00 0.00 0.00 3.77
1720 2065 9.626045 CTATTTTGAAATTGAAGGGAGTACAAC 57.374 33.333 0.00 0.00 0.00 3.32
1721 2066 9.581289 TCTATTTTGAAATTGAAGGGAGTACAA 57.419 29.630 0.00 0.00 29.52 2.41
1722 2067 9.753674 ATCTATTTTGAAATTGAAGGGAGTACA 57.246 29.630 0.00 0.00 34.70 2.90
1724 2069 9.973661 TCATCTATTTTGAAATTGAAGGGAGTA 57.026 29.630 5.06 0.00 34.70 2.59
1725 2070 8.743714 GTCATCTATTTTGAAATTGAAGGGAGT 58.256 33.333 5.06 0.00 34.70 3.85
1726 2071 8.964772 AGTCATCTATTTTGAAATTGAAGGGAG 58.035 33.333 5.06 0.00 34.70 4.30
1727 2072 8.884124 AGTCATCTATTTTGAAATTGAAGGGA 57.116 30.769 5.06 2.30 34.70 4.20
1728 2073 8.742777 TGAGTCATCTATTTTGAAATTGAAGGG 58.257 33.333 5.06 0.49 34.70 3.95
1738 2083 9.778741 ACTTACAAGTTGAGTCATCTATTTTGA 57.221 29.630 10.54 0.00 35.21 2.69
1739 2084 9.817365 CACTTACAAGTTGAGTCATCTATTTTG 57.183 33.333 10.54 2.30 37.08 2.44
1740 2085 8.507249 GCACTTACAAGTTGAGTCATCTATTTT 58.493 33.333 10.54 0.00 37.08 1.82
1741 2086 7.661437 TGCACTTACAAGTTGAGTCATCTATTT 59.339 33.333 10.54 0.00 37.08 1.40
1742 2087 7.161404 TGCACTTACAAGTTGAGTCATCTATT 58.839 34.615 10.54 0.00 37.08 1.73
1743 2088 6.701340 TGCACTTACAAGTTGAGTCATCTAT 58.299 36.000 10.54 0.00 37.08 1.98
1744 2089 6.096673 TGCACTTACAAGTTGAGTCATCTA 57.903 37.500 10.54 0.00 37.08 1.98
1745 2090 4.960938 TGCACTTACAAGTTGAGTCATCT 58.039 39.130 10.54 0.00 37.08 2.90
1746 2091 5.409520 TCATGCACTTACAAGTTGAGTCATC 59.590 40.000 10.54 0.00 37.08 2.92
1747 2092 5.308014 TCATGCACTTACAAGTTGAGTCAT 58.692 37.500 10.54 6.80 37.08 3.06
1748 2093 4.702831 TCATGCACTTACAAGTTGAGTCA 58.297 39.130 10.54 4.92 37.08 3.41
1749 2094 5.869753 ATCATGCACTTACAAGTTGAGTC 57.130 39.130 10.54 0.00 37.08 3.36
1750 2095 6.639632 AAATCATGCACTTACAAGTTGAGT 57.360 33.333 10.54 0.08 37.08 3.41
1751 2096 8.610855 CATAAATCATGCACTTACAAGTTGAG 57.389 34.615 10.54 0.00 37.08 3.02
1766 2111 9.188588 CTAGTTTAATTGGCTGCATAAATCATG 57.811 33.333 0.50 0.00 37.73 3.07
1767 2112 9.135189 TCTAGTTTAATTGGCTGCATAAATCAT 57.865 29.630 0.50 0.00 0.00 2.45
1768 2113 8.518430 TCTAGTTTAATTGGCTGCATAAATCA 57.482 30.769 0.50 0.00 0.00 2.57
1769 2114 9.971922 AATCTAGTTTAATTGGCTGCATAAATC 57.028 29.630 0.50 0.00 0.00 2.17
1774 2119 7.869429 GCATAAATCTAGTTTAATTGGCTGCAT 59.131 33.333 0.50 0.00 35.98 3.96
1775 2120 7.147932 TGCATAAATCTAGTTTAATTGGCTGCA 60.148 33.333 0.50 12.40 37.95 4.41
1776 2121 7.202526 TGCATAAATCTAGTTTAATTGGCTGC 58.797 34.615 0.00 0.00 35.98 5.25
1777 2122 8.408601 ACTGCATAAATCTAGTTTAATTGGCTG 58.591 33.333 0.00 0.00 35.98 4.85
1778 2123 8.525290 ACTGCATAAATCTAGTTTAATTGGCT 57.475 30.769 0.00 0.00 35.98 4.75
1779 2124 8.405531 TGACTGCATAAATCTAGTTTAATTGGC 58.594 33.333 0.00 0.00 35.98 4.52
1786 2131 9.236006 ACTGAATTGACTGCATAAATCTAGTTT 57.764 29.630 0.00 0.00 0.00 2.66
1787 2132 8.798859 ACTGAATTGACTGCATAAATCTAGTT 57.201 30.769 0.00 0.00 0.00 2.24
1791 2136 9.319143 GTAGTACTGAATTGACTGCATAAATCT 57.681 33.333 5.39 0.00 0.00 2.40
1818 2163 6.094325 CACAAGTTTTCCCAAGTTGTACTGTA 59.906 38.462 7.33 0.00 40.64 2.74
1821 2166 4.142249 GCACAAGTTTTCCCAAGTTGTACT 60.142 41.667 7.33 0.00 40.64 2.73
1822 2167 4.109766 GCACAAGTTTTCCCAAGTTGTAC 58.890 43.478 7.33 0.00 40.64 2.90
1823 2168 4.020543 AGCACAAGTTTTCCCAAGTTGTA 58.979 39.130 7.33 0.00 40.64 2.41
1824 2169 2.831526 AGCACAAGTTTTCCCAAGTTGT 59.168 40.909 1.45 2.56 42.63 3.32
1825 2170 3.525268 AGCACAAGTTTTCCCAAGTTG 57.475 42.857 0.00 0.00 36.80 3.16
1826 2171 5.869649 AATAGCACAAGTTTTCCCAAGTT 57.130 34.783 0.00 0.00 0.00 2.66
1827 2172 5.869649 AAATAGCACAAGTTTTCCCAAGT 57.130 34.783 0.00 0.00 0.00 3.16
1828 2173 6.760770 TGAAAAATAGCACAAGTTTTCCCAAG 59.239 34.615 13.28 0.00 38.58 3.61
1829 2174 6.644347 TGAAAAATAGCACAAGTTTTCCCAA 58.356 32.000 13.28 0.00 38.58 4.12
1840 2185 5.532406 AGCAAGAACTCTGAAAAATAGCACA 59.468 36.000 0.00 0.00 0.00 4.57
1850 2195 5.468072 GTCTGATTTCAGCAAGAACTCTGAA 59.532 40.000 14.98 1.03 44.70 3.02
1866 2211 1.808945 CAAAGCGAGCCAGTCTGATTT 59.191 47.619 0.00 0.00 0.00 2.17
1928 2283 6.509523 TTAATCCCCACTTCTACCAATAGG 57.490 41.667 0.00 0.00 42.21 2.57
1929 2284 6.482308 CGTTTAATCCCCACTTCTACCAATAG 59.518 42.308 0.00 0.00 0.00 1.73
1930 2285 6.350906 CGTTTAATCCCCACTTCTACCAATA 58.649 40.000 0.00 0.00 0.00 1.90
1931 2286 5.190677 CGTTTAATCCCCACTTCTACCAAT 58.809 41.667 0.00 0.00 0.00 3.16
1932 2287 4.581868 CGTTTAATCCCCACTTCTACCAA 58.418 43.478 0.00 0.00 0.00 3.67
1933 2288 3.620472 GCGTTTAATCCCCACTTCTACCA 60.620 47.826 0.00 0.00 0.00 3.25
1934 2289 2.941064 GCGTTTAATCCCCACTTCTACC 59.059 50.000 0.00 0.00 0.00 3.18
1935 2290 3.602483 TGCGTTTAATCCCCACTTCTAC 58.398 45.455 0.00 0.00 0.00 2.59
1936 2291 3.985019 TGCGTTTAATCCCCACTTCTA 57.015 42.857 0.00 0.00 0.00 2.10
1937 2292 2.817844 GTTGCGTTTAATCCCCACTTCT 59.182 45.455 0.00 0.00 0.00 2.85
1938 2293 2.817844 AGTTGCGTTTAATCCCCACTTC 59.182 45.455 0.00 0.00 0.00 3.01
1939 2294 2.556622 CAGTTGCGTTTAATCCCCACTT 59.443 45.455 0.00 0.00 0.00 3.16
1940 2295 2.159382 CAGTTGCGTTTAATCCCCACT 58.841 47.619 0.00 0.00 0.00 4.00
1941 2296 1.883926 ACAGTTGCGTTTAATCCCCAC 59.116 47.619 0.00 0.00 0.00 4.61
1942 2297 2.279935 ACAGTTGCGTTTAATCCCCA 57.720 45.000 0.00 0.00 0.00 4.96
1943 2298 3.340928 ACTACAGTTGCGTTTAATCCCC 58.659 45.455 0.00 0.00 0.00 4.81
1966 2321 0.608640 AGTACACCCTAGCACACAGC 59.391 55.000 0.00 0.00 46.19 4.40
1967 2322 1.893137 TCAGTACACCCTAGCACACAG 59.107 52.381 0.00 0.00 0.00 3.66
1968 2323 2.003937 TCAGTACACCCTAGCACACA 57.996 50.000 0.00 0.00 0.00 3.72
1969 2324 2.612221 GGTTCAGTACACCCTAGCACAC 60.612 54.545 0.00 0.00 0.00 3.82
1970 2325 1.621814 GGTTCAGTACACCCTAGCACA 59.378 52.381 0.00 0.00 0.00 4.57
1971 2326 1.900486 AGGTTCAGTACACCCTAGCAC 59.100 52.381 0.00 0.00 34.44 4.40
1972 2327 1.899814 CAGGTTCAGTACACCCTAGCA 59.100 52.381 0.00 0.00 34.44 3.49
1973 2328 1.405661 GCAGGTTCAGTACACCCTAGC 60.406 57.143 0.00 0.00 34.44 3.42
1974 2329 2.180276 AGCAGGTTCAGTACACCCTAG 58.820 52.381 0.00 0.00 34.44 3.02
1975 2330 2.320681 AGCAGGTTCAGTACACCCTA 57.679 50.000 0.00 0.00 34.44 3.53
1976 2331 1.435256 AAGCAGGTTCAGTACACCCT 58.565 50.000 0.00 0.00 34.44 4.34
1977 2332 2.354805 CCTAAGCAGGTTCAGTACACCC 60.355 54.545 0.00 0.00 37.15 4.61
1978 2333 2.935676 GCCTAAGCAGGTTCAGTACACC 60.936 54.545 0.00 0.00 44.68 4.16
1979 2334 2.347731 GCCTAAGCAGGTTCAGTACAC 58.652 52.381 0.00 0.00 44.68 2.90
1980 2335 1.278127 GGCCTAAGCAGGTTCAGTACA 59.722 52.381 0.00 0.00 44.68 2.90
1981 2336 1.278127 TGGCCTAAGCAGGTTCAGTAC 59.722 52.381 3.32 0.00 44.68 2.73
1982 2337 1.555075 CTGGCCTAAGCAGGTTCAGTA 59.445 52.381 3.32 0.00 44.68 2.74
1997 2352 5.463724 CGAAGATATTTCTGAGTAACTGGCC 59.536 44.000 0.00 0.00 30.72 5.36
2002 2357 7.700322 TGCATCGAAGATATTTCTGAGTAAC 57.300 36.000 0.00 0.00 45.12 2.50
2006 2361 6.257411 ACTGTTGCATCGAAGATATTTCTGAG 59.743 38.462 0.00 0.00 45.12 3.35
2077 2438 1.940613 GTGGTGCATTTACCTCGATCC 59.059 52.381 0.00 0.00 41.43 3.36
2097 2609 3.364442 TGGCAAATTCAGGCACCG 58.636 55.556 3.41 0.00 36.56 4.94
2103 2615 0.813184 ATCAGCCGTGGCAAATTCAG 59.187 50.000 14.29 0.00 44.88 3.02
2130 2675 2.305635 TGTATGCCACAAGTCCAGACAT 59.694 45.455 0.00 0.00 32.95 3.06
2160 2705 3.057315 ACGCAAAAGCTAAGTTCATGCAT 60.057 39.130 0.00 0.00 32.80 3.96
2172 2717 4.414852 CAACTATATTGCACGCAAAAGCT 58.585 39.130 8.76 0.00 39.55 3.74
2192 2737 0.821301 TCCACAGACGGCAAATGCAA 60.821 50.000 7.80 0.00 44.36 4.08
2218 2763 1.821216 ACGAAAATAGGGTGCCACAG 58.179 50.000 0.00 0.00 0.00 3.66
2228 2781 4.663636 AGACGGCTTCAAACGAAAATAG 57.336 40.909 0.00 0.00 0.00 1.73
2261 2814 1.338337 CACTACTCCACCCGATGCTAG 59.662 57.143 0.00 0.00 0.00 3.42
2266 2819 1.319541 CGATCACTACTCCACCCGAT 58.680 55.000 0.00 0.00 0.00 4.18
2267 2820 0.750546 CCGATCACTACTCCACCCGA 60.751 60.000 0.00 0.00 0.00 5.14
2268 2821 1.734137 CCGATCACTACTCCACCCG 59.266 63.158 0.00 0.00 0.00 5.28
2269 2822 0.686769 ACCCGATCACTACTCCACCC 60.687 60.000 0.00 0.00 0.00 4.61
2270 2823 0.460311 CACCCGATCACTACTCCACC 59.540 60.000 0.00 0.00 0.00 4.61
2271 2824 0.460311 CCACCCGATCACTACTCCAC 59.540 60.000 0.00 0.00 0.00 4.02
2272 2825 0.686441 CCCACCCGATCACTACTCCA 60.686 60.000 0.00 0.00 0.00 3.86
2273 2826 1.400530 CCCCACCCGATCACTACTCC 61.401 65.000 0.00 0.00 0.00 3.85
2274 2827 1.400530 CCCCCACCCGATCACTACTC 61.401 65.000 0.00 0.00 0.00 2.59
2275 2828 1.382695 CCCCCACCCGATCACTACT 60.383 63.158 0.00 0.00 0.00 2.57
2276 2829 3.227250 CCCCCACCCGATCACTAC 58.773 66.667 0.00 0.00 0.00 2.73
2312 2865 1.199789 TCGAACACATGAATTGCCTGC 59.800 47.619 0.00 0.00 0.00 4.85
2313 2866 3.488047 GGATCGAACACATGAATTGCCTG 60.488 47.826 0.00 0.00 0.00 4.85
2321 2876 3.186909 GTTCATCGGATCGAACACATGA 58.813 45.455 19.35 0.00 40.97 3.07
2334 2889 0.852777 CGATAACCTGCGTTCATCGG 59.147 55.000 0.00 0.00 40.26 4.18
2335 2890 0.229753 GCGATAACCTGCGTTCATCG 59.770 55.000 0.00 0.00 40.99 3.84
2363 2918 1.983972 AGAGTCATGAAACGTCGCTC 58.016 50.000 0.00 0.00 0.00 5.03
2365 2920 2.058798 TGAAGAGTCATGAAACGTCGC 58.941 47.619 0.00 0.00 0.00 5.19
2373 2928 4.099113 CAGACATAGCCTGAAGAGTCATGA 59.901 45.833 0.00 0.00 33.65 3.07
2379 2934 5.330455 TGTTACAGACATAGCCTGAAGAG 57.670 43.478 0.00 0.00 35.69 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.