Multiple sequence alignment - TraesCS3A01G398700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G398700 chr3A 100.000 2408 0 0 1 2408 645617815 645620222 0.000000e+00 4447.0
1 TraesCS3A01G398700 chr3A 99.333 2098 13 1 1 2097 719624519 719626616 0.000000e+00 3795.0
2 TraesCS3A01G398700 chr4A 91.324 2167 90 25 1 2111 669174142 669172018 0.000000e+00 2870.0
3 TraesCS3A01G398700 chr4A 94.511 1093 50 5 1 1090 715366266 715365181 0.000000e+00 1677.0
4 TraesCS3A01G398700 chr4A 92.276 479 21 7 1202 1666 715365181 715364705 0.000000e+00 665.0
5 TraesCS3A01G398700 chr3D 88.337 986 76 20 890 1852 561048565 561049534 0.000000e+00 1147.0
6 TraesCS3A01G398700 chr3D 88.435 882 69 14 890 1749 561032850 561033720 0.000000e+00 1033.0
7 TraesCS3A01G398700 chr3D 90.588 510 38 4 890 1398 561010541 561011041 0.000000e+00 667.0
8 TraesCS3A01G398700 chr3D 86.626 486 37 17 1388 1852 561030757 561031235 1.650000e-141 512.0
9 TraesCS3A01G398700 chr3D 91.692 325 23 2 535 859 561010218 561010538 4.720000e-122 448.0
10 TraesCS3A01G398700 chr3D 91.692 325 23 2 535 859 561032527 561032847 4.720000e-122 448.0
11 TraesCS3A01G398700 chr3D 85.903 227 25 6 1888 2111 561049544 561049766 4.000000e-58 235.0
12 TraesCS3A01G398700 chr3D 85.841 226 25 7 1888 2111 561031245 561031465 1.440000e-57 233.0
13 TraesCS3A01G398700 chr3D 85.778 225 27 5 1888 2111 561033778 561033998 1.440000e-57 233.0
14 TraesCS3A01G398700 chr3D 96.825 63 2 0 797 859 561048500 561048562 3.270000e-19 106.0
15 TraesCS3A01G398700 chrUn 88.067 595 65 5 535 1126 70143348 70143939 0.000000e+00 701.0
16 TraesCS3A01G398700 chr6D 87.805 205 24 1 566 770 326983866 326984069 3.090000e-59 239.0
17 TraesCS3A01G398700 chr1A 77.859 411 67 17 1121 1520 295574473 295574076 1.440000e-57 233.0
18 TraesCS3A01G398700 chr1A 100.000 28 0 0 763 790 295574802 295574775 4.000000e-03 52.8
19 TraesCS3A01G398700 chr5B 85.922 206 27 2 566 770 698046363 698046567 4.030000e-53 219.0
20 TraesCS3A01G398700 chr5D 76.585 410 73 16 1121 1520 50981436 50981832 1.130000e-48 204.0
21 TraesCS3A01G398700 chr5D 83.562 73 12 0 2327 2399 214173358 214173430 4.300000e-08 69.4
22 TraesCS3A01G398700 chr5D 94.286 35 0 2 756 790 50981100 50981132 4.000000e-03 52.8
23 TraesCS3A01G398700 chr1B 84.951 206 26 4 566 770 610005329 610005128 1.130000e-48 204.0
24 TraesCS3A01G398700 chr2B 84.106 151 12 6 106 256 725155397 725155535 4.180000e-28 135.0
25 TraesCS3A01G398700 chr4B 78.916 166 18 12 96 257 625335385 625335537 1.970000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G398700 chr3A 645617815 645620222 2407 False 4447.0 4447 100.0000 1 2408 1 chr3A.!!$F1 2407
1 TraesCS3A01G398700 chr3A 719624519 719626616 2097 False 3795.0 3795 99.3330 1 2097 1 chr3A.!!$F2 2096
2 TraesCS3A01G398700 chr4A 669172018 669174142 2124 True 2870.0 2870 91.3240 1 2111 1 chr4A.!!$R1 2110
3 TraesCS3A01G398700 chr4A 715364705 715366266 1561 True 1171.0 1677 93.3935 1 1666 2 chr4A.!!$R2 1665
4 TraesCS3A01G398700 chr3D 561010218 561011041 823 False 557.5 667 91.1400 535 1398 2 chr3D.!!$F1 863
5 TraesCS3A01G398700 chr3D 561048500 561049766 1266 False 496.0 1147 90.3550 797 2111 3 chr3D.!!$F3 1314
6 TraesCS3A01G398700 chr3D 561030757 561033998 3241 False 491.8 1033 87.6744 535 2111 5 chr3D.!!$F2 1576
7 TraesCS3A01G398700 chrUn 70143348 70143939 591 False 701.0 701 88.0670 535 1126 1 chrUn.!!$F1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 2199 7.87494 TCAGTCATCTTCATTGTAACTTTTGG 58.125 34.615 0.0 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 3603 0.106419 AAAAGACAAAGGCCACCGGA 60.106 50.0 9.46 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
961 2199 7.874940 TCAGTCATCTTCATTGTAACTTTTGG 58.125 34.615 0.00 0.00 0.00 3.28
2111 3422 3.378427 CAGACGTCTGATGGATAGACACA 59.622 47.826 36.73 0.00 46.59 3.72
2112 3423 4.037327 CAGACGTCTGATGGATAGACACAT 59.963 45.833 36.73 0.00 46.59 3.21
2113 3424 5.239525 CAGACGTCTGATGGATAGACACATA 59.760 44.000 36.73 0.00 46.59 2.29
2114 3425 6.007076 AGACGTCTGATGGATAGACACATAT 58.993 40.000 19.30 0.00 43.65 1.78
2115 3426 7.119846 CAGACGTCTGATGGATAGACACATATA 59.880 40.741 36.73 0.00 46.59 0.86
2116 3427 7.119992 AGACGTCTGATGGATAGACACATATAC 59.880 40.741 19.30 0.00 43.65 1.47
2117 3428 6.715264 ACGTCTGATGGATAGACACATATACA 59.285 38.462 1.43 0.00 43.65 2.29
2118 3429 7.094592 ACGTCTGATGGATAGACACATATACAG 60.095 40.741 1.43 0.00 43.65 2.74
2119 3430 7.032580 GTCTGATGGATAGACACATATACAGC 58.967 42.308 0.00 0.00 43.12 4.40
2120 3431 6.153510 TCTGATGGATAGACACATATACAGCC 59.846 42.308 0.00 0.00 32.43 4.85
2121 3432 6.019108 TGATGGATAGACACATATACAGCCT 58.981 40.000 0.00 0.00 32.43 4.58
2122 3433 5.728637 TGGATAGACACATATACAGCCTG 57.271 43.478 0.00 0.00 0.00 4.85
2123 3434 5.393866 TGGATAGACACATATACAGCCTGA 58.606 41.667 0.00 0.00 0.00 3.86
2124 3435 5.838521 TGGATAGACACATATACAGCCTGAA 59.161 40.000 0.00 0.00 0.00 3.02
2125 3436 6.159988 GGATAGACACATATACAGCCTGAAC 58.840 44.000 0.00 0.00 0.00 3.18
2126 3437 4.408182 AGACACATATACAGCCTGAACC 57.592 45.455 0.00 0.00 0.00 3.62
2127 3438 3.774766 AGACACATATACAGCCTGAACCA 59.225 43.478 0.00 0.00 0.00 3.67
2128 3439 4.410228 AGACACATATACAGCCTGAACCAT 59.590 41.667 0.00 0.00 0.00 3.55
2129 3440 5.602561 AGACACATATACAGCCTGAACCATA 59.397 40.000 0.00 0.00 0.00 2.74
2130 3441 6.270927 AGACACATATACAGCCTGAACCATAT 59.729 38.462 0.00 0.00 0.00 1.78
2131 3442 7.454694 AGACACATATACAGCCTGAACCATATA 59.545 37.037 0.00 0.00 0.00 0.86
2132 3443 8.150827 ACACATATACAGCCTGAACCATATAT 57.849 34.615 0.00 0.00 0.00 0.86
2133 3444 9.267071 ACACATATACAGCCTGAACCATATATA 57.733 33.333 0.00 0.00 0.00 0.86
2139 3450 9.904732 ATACAGCCTGAACCATATATATATCCT 57.095 33.333 0.00 0.00 0.00 3.24
2141 3452 9.904732 ACAGCCTGAACCATATATATATCCTAT 57.095 33.333 0.00 0.00 0.00 2.57
2159 3470 5.754782 TCCTATCTTGCAGGATTTAAAGCA 58.245 37.500 17.25 0.68 37.27 3.91
2160 3471 5.824624 TCCTATCTTGCAGGATTTAAAGCAG 59.175 40.000 17.25 6.12 37.27 4.24
2161 3472 5.591877 CCTATCTTGCAGGATTTAAAGCAGT 59.408 40.000 17.25 0.00 38.35 4.40
2162 3473 5.990120 ATCTTGCAGGATTTAAAGCAGTT 57.010 34.783 5.32 0.00 38.35 3.16
2163 3474 5.125100 TCTTGCAGGATTTAAAGCAGTTG 57.875 39.130 5.72 2.10 38.35 3.16
2164 3475 4.584325 TCTTGCAGGATTTAAAGCAGTTGT 59.416 37.500 5.72 0.00 38.35 3.32
2165 3476 4.241590 TGCAGGATTTAAAGCAGTTGTG 57.758 40.909 5.72 0.00 32.48 3.33
2166 3477 3.636300 TGCAGGATTTAAAGCAGTTGTGT 59.364 39.130 5.72 0.00 32.48 3.72
2167 3478 4.099266 TGCAGGATTTAAAGCAGTTGTGTT 59.901 37.500 5.72 0.00 32.48 3.32
2168 3479 5.049828 GCAGGATTTAAAGCAGTTGTGTTT 58.950 37.500 5.72 0.00 0.00 2.83
2169 3480 5.523552 GCAGGATTTAAAGCAGTTGTGTTTT 59.476 36.000 5.72 0.00 40.00 2.43
2170 3481 6.037062 GCAGGATTTAAAGCAGTTGTGTTTTT 59.963 34.615 5.72 0.00 38.06 1.94
2171 3482 7.621102 CAGGATTTAAAGCAGTTGTGTTTTTC 58.379 34.615 5.72 0.00 38.06 2.29
2172 3483 7.492344 CAGGATTTAAAGCAGTTGTGTTTTTCT 59.508 33.333 5.72 0.00 38.06 2.52
2173 3484 8.040727 AGGATTTAAAGCAGTTGTGTTTTTCTT 58.959 29.630 5.72 0.00 38.06 2.52
2174 3485 8.116136 GGATTTAAAGCAGTTGTGTTTTTCTTG 58.884 33.333 5.72 0.00 38.06 3.02
2175 3486 8.770438 ATTTAAAGCAGTTGTGTTTTTCTTGA 57.230 26.923 0.00 0.00 38.06 3.02
2176 3487 7.575332 TTAAAGCAGTTGTGTTTTTCTTGAC 57.425 32.000 0.00 0.00 38.06 3.18
2177 3488 4.110036 AGCAGTTGTGTTTTTCTTGACC 57.890 40.909 0.00 0.00 0.00 4.02
2178 3489 3.509575 AGCAGTTGTGTTTTTCTTGACCA 59.490 39.130 0.00 0.00 0.00 4.02
2179 3490 4.021544 AGCAGTTGTGTTTTTCTTGACCAA 60.022 37.500 0.00 0.00 0.00 3.67
2180 3491 4.688413 GCAGTTGTGTTTTTCTTGACCAAA 59.312 37.500 0.00 0.00 0.00 3.28
2181 3492 5.351189 GCAGTTGTGTTTTTCTTGACCAAAT 59.649 36.000 0.00 0.00 0.00 2.32
2182 3493 6.128309 GCAGTTGTGTTTTTCTTGACCAAATT 60.128 34.615 0.00 0.00 0.00 1.82
2183 3494 7.572910 GCAGTTGTGTTTTTCTTGACCAAATTT 60.573 33.333 0.00 0.00 0.00 1.82
2184 3495 8.930760 CAGTTGTGTTTTTCTTGACCAAATTTA 58.069 29.630 0.00 0.00 0.00 1.40
2185 3496 9.150348 AGTTGTGTTTTTCTTGACCAAATTTAG 57.850 29.630 0.00 0.00 0.00 1.85
2186 3497 8.931775 GTTGTGTTTTTCTTGACCAAATTTAGT 58.068 29.630 0.00 0.00 0.00 2.24
2187 3498 8.472683 TGTGTTTTTCTTGACCAAATTTAGTG 57.527 30.769 0.00 0.00 0.00 2.74
2188 3499 7.064016 TGTGTTTTTCTTGACCAAATTTAGTGC 59.936 33.333 0.00 0.00 0.00 4.40
2189 3500 7.277760 GTGTTTTTCTTGACCAAATTTAGTGCT 59.722 33.333 0.00 0.00 0.00 4.40
2190 3501 7.277539 TGTTTTTCTTGACCAAATTTAGTGCTG 59.722 33.333 0.00 0.00 0.00 4.41
2191 3502 4.503741 TCTTGACCAAATTTAGTGCTGC 57.496 40.909 0.00 0.00 0.00 5.25
2192 3503 3.888323 TCTTGACCAAATTTAGTGCTGCA 59.112 39.130 0.00 0.00 0.00 4.41
2193 3504 3.921119 TGACCAAATTTAGTGCTGCAG 57.079 42.857 10.11 10.11 0.00 4.41
2194 3505 3.221771 TGACCAAATTTAGTGCTGCAGT 58.778 40.909 16.64 15.20 0.00 4.40
2195 3506 4.393834 TGACCAAATTTAGTGCTGCAGTA 58.606 39.130 16.64 12.98 0.00 2.74
2196 3507 4.215399 TGACCAAATTTAGTGCTGCAGTAC 59.785 41.667 25.52 25.52 0.00 2.73
2197 3508 4.398319 ACCAAATTTAGTGCTGCAGTACT 58.602 39.130 34.81 34.81 43.35 2.73
2198 3509 5.556915 ACCAAATTTAGTGCTGCAGTACTA 58.443 37.500 32.82 32.82 41.24 1.82
2199 3510 5.411669 ACCAAATTTAGTGCTGCAGTACTAC 59.588 40.000 35.27 20.12 41.70 2.73
2200 3511 5.411361 CCAAATTTAGTGCTGCAGTACTACA 59.589 40.000 35.27 30.68 41.70 2.74
2201 3512 6.094048 CCAAATTTAGTGCTGCAGTACTACAT 59.906 38.462 35.27 31.31 41.70 2.29
2202 3513 7.362056 CCAAATTTAGTGCTGCAGTACTACATT 60.362 37.037 32.97 32.97 41.77 2.71
2203 3514 6.910536 ATTTAGTGCTGCAGTACTACATTC 57.089 37.500 35.27 10.72 41.70 2.67
2204 3515 3.961480 AGTGCTGCAGTACTACATTCA 57.039 42.857 32.63 8.20 39.21 2.57
2205 3516 3.854666 AGTGCTGCAGTACTACATTCAG 58.145 45.455 32.63 0.00 39.21 3.02
2206 3517 3.259374 AGTGCTGCAGTACTACATTCAGT 59.741 43.478 32.63 10.76 39.21 3.41
2207 3518 3.997021 GTGCTGCAGTACTACATTCAGTT 59.003 43.478 25.57 0.00 0.00 3.16
2208 3519 4.452455 GTGCTGCAGTACTACATTCAGTTT 59.548 41.667 25.57 0.00 0.00 2.66
2209 3520 5.637810 GTGCTGCAGTACTACATTCAGTTTA 59.362 40.000 25.57 0.00 0.00 2.01
2210 3521 6.313905 GTGCTGCAGTACTACATTCAGTTTAT 59.686 38.462 25.57 0.00 0.00 1.40
2211 3522 6.878923 TGCTGCAGTACTACATTCAGTTTATT 59.121 34.615 16.64 0.00 0.00 1.40
2212 3523 7.148423 TGCTGCAGTACTACATTCAGTTTATTG 60.148 37.037 16.64 0.00 0.00 1.90
2213 3524 7.064609 GCTGCAGTACTACATTCAGTTTATTGA 59.935 37.037 16.64 0.00 0.00 2.57
2214 3525 8.840833 TGCAGTACTACATTCAGTTTATTGAA 57.159 30.769 0.00 0.00 41.00 2.69
2215 3526 8.935844 TGCAGTACTACATTCAGTTTATTGAAG 58.064 33.333 0.00 0.00 40.16 3.02
2216 3527 9.151471 GCAGTACTACATTCAGTTTATTGAAGA 57.849 33.333 0.00 0.00 40.16 2.87
2221 3532 9.778741 ACTACATTCAGTTTATTGAAGAAGTGA 57.221 29.630 0.00 0.00 40.16 3.41
2247 3558 9.912634 AATTTGAATAACATAAATAGCGATGGG 57.087 29.630 0.00 0.00 0.00 4.00
2248 3559 8.684386 TTTGAATAACATAAATAGCGATGGGA 57.316 30.769 0.00 0.00 0.00 4.37
2249 3560 8.862325 TTGAATAACATAAATAGCGATGGGAT 57.138 30.769 0.00 0.00 0.00 3.85
2250 3561 8.862325 TGAATAACATAAATAGCGATGGGATT 57.138 30.769 0.00 0.00 0.00 3.01
2251 3562 8.946085 TGAATAACATAAATAGCGATGGGATTC 58.054 33.333 0.00 0.00 33.35 2.52
2252 3563 7.865706 ATAACATAAATAGCGATGGGATTCC 57.134 36.000 0.00 0.00 0.00 3.01
2253 3564 4.589908 ACATAAATAGCGATGGGATTCCC 58.410 43.478 15.40 15.40 45.71 3.97
2266 3577 4.471904 GGGATTCCCACAAAAATTCCTC 57.528 45.455 17.36 0.00 44.65 3.71
2267 3578 3.197766 GGGATTCCCACAAAAATTCCTCC 59.802 47.826 17.36 0.00 44.65 4.30
2268 3579 4.096681 GGATTCCCACAAAAATTCCTCCT 58.903 43.478 0.00 0.00 0.00 3.69
2269 3580 4.160439 GGATTCCCACAAAAATTCCTCCTC 59.840 45.833 0.00 0.00 0.00 3.71
2270 3581 3.169512 TCCCACAAAAATTCCTCCTCC 57.830 47.619 0.00 0.00 0.00 4.30
2271 3582 2.721906 TCCCACAAAAATTCCTCCTCCT 59.278 45.455 0.00 0.00 0.00 3.69
2272 3583 3.092301 CCCACAAAAATTCCTCCTCCTC 58.908 50.000 0.00 0.00 0.00 3.71
2273 3584 3.092301 CCACAAAAATTCCTCCTCCTCC 58.908 50.000 0.00 0.00 0.00 4.30
2274 3585 3.092301 CACAAAAATTCCTCCTCCTCCC 58.908 50.000 0.00 0.00 0.00 4.30
2275 3586 2.721906 ACAAAAATTCCTCCTCCTCCCA 59.278 45.455 0.00 0.00 0.00 4.37
2276 3587 3.092301 CAAAAATTCCTCCTCCTCCCAC 58.908 50.000 0.00 0.00 0.00 4.61
2277 3588 1.299939 AAATTCCTCCTCCTCCCACC 58.700 55.000 0.00 0.00 0.00 4.61
2278 3589 0.983378 AATTCCTCCTCCTCCCACCG 60.983 60.000 0.00 0.00 0.00 4.94
2279 3590 2.898472 ATTCCTCCTCCTCCCACCGG 62.898 65.000 0.00 0.00 0.00 5.28
2293 3604 4.785453 CCGGGGCAGCCTTGTCTC 62.785 72.222 12.43 0.00 0.00 3.36
2294 3605 4.785453 CGGGGCAGCCTTGTCTCC 62.785 72.222 12.43 1.20 0.00 3.71
2295 3606 4.785453 GGGGCAGCCTTGTCTCCG 62.785 72.222 12.43 0.00 0.00 4.63
2296 3607 4.785453 GGGCAGCCTTGTCTCCGG 62.785 72.222 12.43 0.00 0.00 5.14
2297 3608 4.021925 GGCAGCCTTGTCTCCGGT 62.022 66.667 3.29 0.00 0.00 5.28
2298 3609 2.743928 GCAGCCTTGTCTCCGGTG 60.744 66.667 0.00 0.00 0.00 4.94
2299 3610 2.046892 CAGCCTTGTCTCCGGTGG 60.047 66.667 0.00 0.00 0.00 4.61
2300 3611 4.021925 AGCCTTGTCTCCGGTGGC 62.022 66.667 0.00 0.00 43.52 5.01
2302 3613 3.322466 CCTTGTCTCCGGTGGCCT 61.322 66.667 3.32 0.00 0.00 5.19
2303 3614 2.750350 CTTGTCTCCGGTGGCCTT 59.250 61.111 3.32 0.00 0.00 4.35
2304 3615 1.073199 CTTGTCTCCGGTGGCCTTT 59.927 57.895 3.32 0.00 0.00 3.11
2305 3616 1.228124 TTGTCTCCGGTGGCCTTTG 60.228 57.895 3.32 0.00 0.00 2.77
2306 3617 1.990160 TTGTCTCCGGTGGCCTTTGT 61.990 55.000 3.32 0.00 0.00 2.83
2307 3618 1.671379 GTCTCCGGTGGCCTTTGTC 60.671 63.158 3.32 0.00 0.00 3.18
2308 3619 1.841556 TCTCCGGTGGCCTTTGTCT 60.842 57.895 3.32 0.00 0.00 3.41
2309 3620 1.073199 CTCCGGTGGCCTTTGTCTT 59.927 57.895 3.32 0.00 0.00 3.01
2310 3621 0.537371 CTCCGGTGGCCTTTGTCTTT 60.537 55.000 3.32 0.00 0.00 2.52
2311 3622 0.106419 TCCGGTGGCCTTTGTCTTTT 60.106 50.000 3.32 0.00 0.00 2.27
2312 3623 0.750249 CCGGTGGCCTTTGTCTTTTT 59.250 50.000 3.32 0.00 0.00 1.94
2327 3638 3.274601 TTTTTAGGCCATGACCCCG 57.725 52.632 5.01 0.00 0.00 5.73
2328 3639 0.323908 TTTTTAGGCCATGACCCCGG 60.324 55.000 5.01 0.00 0.00 5.73
2333 3644 4.759205 GCCATGACCCCGGCCTTT 62.759 66.667 0.00 0.00 42.82 3.11
2334 3645 2.440247 CCATGACCCCGGCCTTTC 60.440 66.667 0.00 0.00 0.00 2.62
2335 3646 2.440247 CATGACCCCGGCCTTTCC 60.440 66.667 0.00 0.00 0.00 3.13
2336 3647 3.739613 ATGACCCCGGCCTTTCCC 61.740 66.667 0.00 0.00 0.00 3.97
2338 3649 4.426313 GACCCCGGCCTTTCCCAG 62.426 72.222 0.00 0.00 0.00 4.45
2343 3654 4.715523 CGGCCTTTCCCAGCGGAA 62.716 66.667 0.00 0.00 46.91 4.30
2349 3660 3.388841 TTCCCAGCGGAAGGACTC 58.611 61.111 0.00 0.00 43.57 3.36
2350 3661 2.291043 TTCCCAGCGGAAGGACTCC 61.291 63.158 0.00 0.00 43.57 3.85
2351 3662 2.685380 CCCAGCGGAAGGACTCCT 60.685 66.667 0.00 0.00 42.85 3.69
2353 3664 1.679898 CCAGCGGAAGGACTCCTTT 59.320 57.895 11.85 0.00 44.82 3.11
2354 3665 0.036875 CCAGCGGAAGGACTCCTTTT 59.963 55.000 11.85 0.00 44.82 2.27
2355 3666 1.545651 CCAGCGGAAGGACTCCTTTTT 60.546 52.381 11.85 0.00 44.82 1.94
2377 3688 7.444558 TTTTAGATGTTTCTTCGTGTTTTGC 57.555 32.000 0.00 0.00 33.17 3.68
2378 3689 4.900635 AGATGTTTCTTCGTGTTTTGCT 57.099 36.364 0.00 0.00 0.00 3.91
2379 3690 7.485418 TTAGATGTTTCTTCGTGTTTTGCTA 57.515 32.000 0.00 0.00 33.17 3.49
2380 3691 5.990408 AGATGTTTCTTCGTGTTTTGCTAG 58.010 37.500 0.00 0.00 0.00 3.42
2381 3692 4.545823 TGTTTCTTCGTGTTTTGCTAGG 57.454 40.909 0.00 0.00 0.00 3.02
2382 3693 3.314080 TGTTTCTTCGTGTTTTGCTAGGG 59.686 43.478 0.00 0.00 0.00 3.53
2383 3694 2.922740 TCTTCGTGTTTTGCTAGGGT 57.077 45.000 0.00 0.00 0.00 4.34
2384 3695 3.202829 TCTTCGTGTTTTGCTAGGGTT 57.797 42.857 0.00 0.00 0.00 4.11
2385 3696 3.547746 TCTTCGTGTTTTGCTAGGGTTT 58.452 40.909 0.00 0.00 0.00 3.27
2386 3697 3.314080 TCTTCGTGTTTTGCTAGGGTTTG 59.686 43.478 0.00 0.00 0.00 2.93
2387 3698 2.645802 TCGTGTTTTGCTAGGGTTTGT 58.354 42.857 0.00 0.00 0.00 2.83
2388 3699 2.356382 TCGTGTTTTGCTAGGGTTTGTG 59.644 45.455 0.00 0.00 0.00 3.33
2389 3700 2.098443 CGTGTTTTGCTAGGGTTTGTGT 59.902 45.455 0.00 0.00 0.00 3.72
2390 3701 3.428316 CGTGTTTTGCTAGGGTTTGTGTT 60.428 43.478 0.00 0.00 0.00 3.32
2391 3702 4.500127 GTGTTTTGCTAGGGTTTGTGTTT 58.500 39.130 0.00 0.00 0.00 2.83
2392 3703 4.932799 GTGTTTTGCTAGGGTTTGTGTTTT 59.067 37.500 0.00 0.00 0.00 2.43
2393 3704 4.932200 TGTTTTGCTAGGGTTTGTGTTTTG 59.068 37.500 0.00 0.00 0.00 2.44
2394 3705 2.880963 TGCTAGGGTTTGTGTTTTGC 57.119 45.000 0.00 0.00 0.00 3.68
2395 3706 2.383855 TGCTAGGGTTTGTGTTTTGCT 58.616 42.857 0.00 0.00 0.00 3.91
2396 3707 2.360801 TGCTAGGGTTTGTGTTTTGCTC 59.639 45.455 0.00 0.00 0.00 4.26
2397 3708 2.360801 GCTAGGGTTTGTGTTTTGCTCA 59.639 45.455 0.00 0.00 0.00 4.26
2398 3709 3.550842 GCTAGGGTTTGTGTTTTGCTCAG 60.551 47.826 0.00 0.00 0.00 3.35
2399 3710 1.756538 AGGGTTTGTGTTTTGCTCAGG 59.243 47.619 0.00 0.00 0.00 3.86
2400 3711 1.754226 GGGTTTGTGTTTTGCTCAGGA 59.246 47.619 0.00 0.00 0.00 3.86
2401 3712 2.167487 GGGTTTGTGTTTTGCTCAGGAA 59.833 45.455 0.00 0.00 0.00 3.36
2402 3713 3.186909 GGTTTGTGTTTTGCTCAGGAAC 58.813 45.455 0.00 0.00 0.00 3.62
2403 3714 3.367910 GGTTTGTGTTTTGCTCAGGAACA 60.368 43.478 0.00 0.00 0.00 3.18
2404 3715 4.432712 GTTTGTGTTTTGCTCAGGAACAT 58.567 39.130 0.00 0.00 35.91 2.71
2405 3716 3.713858 TGTGTTTTGCTCAGGAACATG 57.286 42.857 0.00 0.00 35.91 3.21
2406 3717 3.286353 TGTGTTTTGCTCAGGAACATGA 58.714 40.909 0.00 0.00 35.91 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 264 4.992319 CACCTAACACTGAAAATACCGACA 59.008 41.667 0.00 0.00 0.00 4.35
562 1800 5.854010 AACACAAGACTGAGAAGTGACTA 57.146 39.130 0.00 0.00 34.47 2.59
898 2136 5.761726 TCATAGACAAATCTGATCATGCCAC 59.238 40.000 0.00 0.00 36.29 5.01
961 2199 9.597999 GATGCCAAATCAAATCTTTAACAAAAC 57.402 29.630 0.00 0.00 0.00 2.43
2113 3424 9.904732 AGGATATATATATGGTTCAGGCTGTAT 57.095 33.333 15.27 7.08 0.00 2.29
2115 3426 9.904732 ATAGGATATATATATGGTTCAGGCTGT 57.095 33.333 15.27 0.00 0.00 4.40
2137 3448 5.591877 ACTGCTTTAAATCCTGCAAGATAGG 59.408 40.000 0.00 0.00 34.07 2.57
2138 3449 6.690194 ACTGCTTTAAATCCTGCAAGATAG 57.310 37.500 0.00 0.00 34.07 2.08
2139 3450 6.434028 ACAACTGCTTTAAATCCTGCAAGATA 59.566 34.615 0.00 0.00 34.07 1.98
2140 3451 5.244626 ACAACTGCTTTAAATCCTGCAAGAT 59.755 36.000 0.00 0.00 34.07 2.40
2141 3452 4.584325 ACAACTGCTTTAAATCCTGCAAGA 59.416 37.500 2.05 0.00 34.07 3.02
2142 3453 4.682860 CACAACTGCTTTAAATCCTGCAAG 59.317 41.667 2.05 0.00 34.90 4.01
2143 3454 4.099266 ACACAACTGCTTTAAATCCTGCAA 59.901 37.500 2.05 0.00 34.90 4.08
2144 3455 3.636300 ACACAACTGCTTTAAATCCTGCA 59.364 39.130 0.61 0.61 0.00 4.41
2145 3456 4.243007 ACACAACTGCTTTAAATCCTGC 57.757 40.909 0.00 0.00 0.00 4.85
2146 3457 7.492344 AGAAAAACACAACTGCTTTAAATCCTG 59.508 33.333 0.00 0.00 0.00 3.86
2147 3458 7.555965 AGAAAAACACAACTGCTTTAAATCCT 58.444 30.769 0.00 0.00 0.00 3.24
2148 3459 7.770801 AGAAAAACACAACTGCTTTAAATCC 57.229 32.000 0.00 0.00 0.00 3.01
2149 3460 8.868916 TCAAGAAAAACACAACTGCTTTAAATC 58.131 29.630 0.00 0.00 0.00 2.17
2150 3461 8.655970 GTCAAGAAAAACACAACTGCTTTAAAT 58.344 29.630 0.00 0.00 0.00 1.40
2151 3462 7.117092 GGTCAAGAAAAACACAACTGCTTTAAA 59.883 33.333 0.00 0.00 0.00 1.52
2152 3463 6.588373 GGTCAAGAAAAACACAACTGCTTTAA 59.412 34.615 0.00 0.00 0.00 1.52
2153 3464 6.096695 GGTCAAGAAAAACACAACTGCTTTA 58.903 36.000 0.00 0.00 0.00 1.85
2154 3465 4.929211 GGTCAAGAAAAACACAACTGCTTT 59.071 37.500 0.00 0.00 0.00 3.51
2155 3466 4.021544 TGGTCAAGAAAAACACAACTGCTT 60.022 37.500 0.00 0.00 0.00 3.91
2156 3467 3.509575 TGGTCAAGAAAAACACAACTGCT 59.490 39.130 0.00 0.00 0.00 4.24
2157 3468 3.843999 TGGTCAAGAAAAACACAACTGC 58.156 40.909 0.00 0.00 0.00 4.40
2158 3469 6.966435 ATTTGGTCAAGAAAAACACAACTG 57.034 33.333 0.00 0.00 0.00 3.16
2159 3470 7.977789 AAATTTGGTCAAGAAAAACACAACT 57.022 28.000 0.00 0.00 0.00 3.16
2160 3471 8.931775 ACTAAATTTGGTCAAGAAAAACACAAC 58.068 29.630 0.65 0.00 0.00 3.32
2161 3472 8.930760 CACTAAATTTGGTCAAGAAAAACACAA 58.069 29.630 3.92 0.00 0.00 3.33
2162 3473 7.064016 GCACTAAATTTGGTCAAGAAAAACACA 59.936 33.333 3.92 0.00 0.00 3.72
2163 3474 7.277760 AGCACTAAATTTGGTCAAGAAAAACAC 59.722 33.333 3.92 0.00 0.00 3.32
2164 3475 7.277539 CAGCACTAAATTTGGTCAAGAAAAACA 59.722 33.333 3.92 0.00 0.00 2.83
2165 3476 7.621102 CAGCACTAAATTTGGTCAAGAAAAAC 58.379 34.615 3.92 0.00 0.00 2.43
2166 3477 6.257630 GCAGCACTAAATTTGGTCAAGAAAAA 59.742 34.615 3.92 0.00 0.00 1.94
2167 3478 5.752955 GCAGCACTAAATTTGGTCAAGAAAA 59.247 36.000 3.92 0.00 0.00 2.29
2168 3479 5.163468 TGCAGCACTAAATTTGGTCAAGAAA 60.163 36.000 3.92 0.00 0.00 2.52
2169 3480 4.340666 TGCAGCACTAAATTTGGTCAAGAA 59.659 37.500 3.92 0.00 0.00 2.52
2170 3481 3.888323 TGCAGCACTAAATTTGGTCAAGA 59.112 39.130 3.92 0.00 0.00 3.02
2171 3482 4.232221 CTGCAGCACTAAATTTGGTCAAG 58.768 43.478 3.92 0.00 0.00 3.02
2172 3483 3.636300 ACTGCAGCACTAAATTTGGTCAA 59.364 39.130 15.27 0.00 0.00 3.18
2173 3484 3.221771 ACTGCAGCACTAAATTTGGTCA 58.778 40.909 15.27 0.00 0.00 4.02
2174 3485 3.923017 ACTGCAGCACTAAATTTGGTC 57.077 42.857 15.27 0.75 0.00 4.02
2175 3486 4.398319 AGTACTGCAGCACTAAATTTGGT 58.602 39.130 18.24 0.65 0.00 3.67
2176 3487 5.411361 TGTAGTACTGCAGCACTAAATTTGG 59.589 40.000 25.07 0.00 0.00 3.28
2177 3488 6.480524 TGTAGTACTGCAGCACTAAATTTG 57.519 37.500 25.07 0.00 0.00 2.32
2178 3489 7.390440 TGAATGTAGTACTGCAGCACTAAATTT 59.610 33.333 30.56 21.94 36.00 1.82
2179 3490 6.878923 TGAATGTAGTACTGCAGCACTAAATT 59.121 34.615 30.51 30.51 37.71 1.82
2180 3491 6.406370 TGAATGTAGTACTGCAGCACTAAAT 58.594 36.000 25.07 22.50 28.28 1.40
2181 3492 5.789521 TGAATGTAGTACTGCAGCACTAAA 58.210 37.500 25.07 21.35 0.00 1.85
2182 3493 5.047306 ACTGAATGTAGTACTGCAGCACTAA 60.047 40.000 25.07 16.51 0.00 2.24
2183 3494 4.462834 ACTGAATGTAGTACTGCAGCACTA 59.537 41.667 20.71 20.71 0.00 2.74
2184 3495 3.259374 ACTGAATGTAGTACTGCAGCACT 59.741 43.478 22.80 22.80 0.00 4.40
2185 3496 3.589988 ACTGAATGTAGTACTGCAGCAC 58.410 45.455 18.73 12.04 0.00 4.40
2186 3497 3.961480 ACTGAATGTAGTACTGCAGCA 57.039 42.857 18.73 16.67 0.00 4.41
2187 3498 6.910536 ATAAACTGAATGTAGTACTGCAGC 57.089 37.500 18.73 13.32 0.00 5.25
2188 3499 8.479313 TCAATAAACTGAATGTAGTACTGCAG 57.521 34.615 18.73 13.48 0.00 4.41
2189 3500 8.840833 TTCAATAAACTGAATGTAGTACTGCA 57.159 30.769 16.34 16.34 30.31 4.41
2190 3501 9.151471 TCTTCAATAAACTGAATGTAGTACTGC 57.849 33.333 5.39 4.49 34.86 4.40
2195 3506 9.778741 TCACTTCTTCAATAAACTGAATGTAGT 57.221 29.630 0.00 0.00 34.86 2.73
2221 3532 9.912634 CCCATCGCTATTTATGTTATTCAAATT 57.087 29.630 0.00 0.00 0.00 1.82
2222 3533 9.295825 TCCCATCGCTATTTATGTTATTCAAAT 57.704 29.630 0.00 0.00 0.00 2.32
2223 3534 8.684386 TCCCATCGCTATTTATGTTATTCAAA 57.316 30.769 0.00 0.00 0.00 2.69
2224 3535 8.862325 ATCCCATCGCTATTTATGTTATTCAA 57.138 30.769 0.00 0.00 0.00 2.69
2225 3536 8.862325 AATCCCATCGCTATTTATGTTATTCA 57.138 30.769 0.00 0.00 0.00 2.57
2226 3537 8.398665 GGAATCCCATCGCTATTTATGTTATTC 58.601 37.037 0.00 0.00 0.00 1.75
2227 3538 7.339466 GGGAATCCCATCGCTATTTATGTTATT 59.661 37.037 14.67 0.00 44.65 1.40
2228 3539 6.828785 GGGAATCCCATCGCTATTTATGTTAT 59.171 38.462 14.67 0.00 44.65 1.89
2229 3540 6.177610 GGGAATCCCATCGCTATTTATGTTA 58.822 40.000 14.67 0.00 44.65 2.41
2230 3541 5.010282 GGGAATCCCATCGCTATTTATGTT 58.990 41.667 14.67 0.00 44.65 2.71
2231 3542 4.589908 GGGAATCCCATCGCTATTTATGT 58.410 43.478 14.67 0.00 44.65 2.29
2245 3556 3.197766 GGAGGAATTTTTGTGGGAATCCC 59.802 47.826 12.39 12.39 45.71 3.85
2246 3557 4.096681 AGGAGGAATTTTTGTGGGAATCC 58.903 43.478 0.00 0.00 0.00 3.01
2247 3558 4.160439 GGAGGAGGAATTTTTGTGGGAATC 59.840 45.833 0.00 0.00 0.00 2.52
2248 3559 4.096681 GGAGGAGGAATTTTTGTGGGAAT 58.903 43.478 0.00 0.00 0.00 3.01
2249 3560 3.142028 AGGAGGAGGAATTTTTGTGGGAA 59.858 43.478 0.00 0.00 0.00 3.97
2250 3561 2.721906 AGGAGGAGGAATTTTTGTGGGA 59.278 45.455 0.00 0.00 0.00 4.37
2251 3562 3.092301 GAGGAGGAGGAATTTTTGTGGG 58.908 50.000 0.00 0.00 0.00 4.61
2252 3563 3.092301 GGAGGAGGAGGAATTTTTGTGG 58.908 50.000 0.00 0.00 0.00 4.17
2253 3564 3.092301 GGGAGGAGGAGGAATTTTTGTG 58.908 50.000 0.00 0.00 0.00 3.33
2254 3565 2.721906 TGGGAGGAGGAGGAATTTTTGT 59.278 45.455 0.00 0.00 0.00 2.83
2255 3566 3.092301 GTGGGAGGAGGAGGAATTTTTG 58.908 50.000 0.00 0.00 0.00 2.44
2256 3567 2.043115 GGTGGGAGGAGGAGGAATTTTT 59.957 50.000 0.00 0.00 0.00 1.94
2257 3568 1.641192 GGTGGGAGGAGGAGGAATTTT 59.359 52.381 0.00 0.00 0.00 1.82
2258 3569 1.299939 GGTGGGAGGAGGAGGAATTT 58.700 55.000 0.00 0.00 0.00 1.82
2259 3570 0.983378 CGGTGGGAGGAGGAGGAATT 60.983 60.000 0.00 0.00 0.00 2.17
2260 3571 1.383248 CGGTGGGAGGAGGAGGAAT 60.383 63.158 0.00 0.00 0.00 3.01
2261 3572 2.038975 CGGTGGGAGGAGGAGGAA 59.961 66.667 0.00 0.00 0.00 3.36
2262 3573 4.075793 CCGGTGGGAGGAGGAGGA 62.076 72.222 0.00 0.00 34.06 3.71
2276 3587 4.785453 GAGACAAGGCTGCCCCGG 62.785 72.222 16.57 7.70 39.21 5.73
2277 3588 4.785453 GGAGACAAGGCTGCCCCG 62.785 72.222 16.57 9.37 39.21 5.73
2278 3589 4.785453 CGGAGACAAGGCTGCCCC 62.785 72.222 16.57 7.22 0.00 5.80
2279 3590 4.785453 CCGGAGACAAGGCTGCCC 62.785 72.222 16.57 0.00 0.00 5.36
2280 3591 4.021925 ACCGGAGACAAGGCTGCC 62.022 66.667 9.46 11.65 0.00 4.85
2281 3592 2.743928 CACCGGAGACAAGGCTGC 60.744 66.667 9.46 0.00 0.00 5.25
2282 3593 2.046892 CCACCGGAGACAAGGCTG 60.047 66.667 9.46 0.00 0.00 4.85
2283 3594 4.021925 GCCACCGGAGACAAGGCT 62.022 66.667 9.46 0.00 42.01 4.58
2285 3596 2.411765 AAAGGCCACCGGAGACAAGG 62.412 60.000 9.46 0.54 0.00 3.61
2286 3597 1.073199 AAAGGCCACCGGAGACAAG 59.927 57.895 9.46 0.00 0.00 3.16
2287 3598 1.228124 CAAAGGCCACCGGAGACAA 60.228 57.895 9.46 0.00 0.00 3.18
2288 3599 2.391724 GACAAAGGCCACCGGAGACA 62.392 60.000 9.46 0.00 0.00 3.41
2289 3600 1.671379 GACAAAGGCCACCGGAGAC 60.671 63.158 9.46 0.00 0.00 3.36
2290 3601 1.415672 AAGACAAAGGCCACCGGAGA 61.416 55.000 9.46 0.00 0.00 3.71
2291 3602 0.537371 AAAGACAAAGGCCACCGGAG 60.537 55.000 9.46 0.00 0.00 4.63
2292 3603 0.106419 AAAAGACAAAGGCCACCGGA 60.106 50.000 9.46 0.00 0.00 5.14
2293 3604 0.750249 AAAAAGACAAAGGCCACCGG 59.250 50.000 5.01 0.00 0.00 5.28
2309 3620 0.323908 CCGGGGTCATGGCCTAAAAA 60.324 55.000 17.62 0.00 0.00 1.94
2310 3621 1.304952 CCGGGGTCATGGCCTAAAA 59.695 57.895 17.62 0.00 0.00 1.52
2311 3622 3.003230 CCGGGGTCATGGCCTAAA 58.997 61.111 17.62 0.00 0.00 1.85
2312 3623 3.804329 GCCGGGGTCATGGCCTAA 61.804 66.667 17.62 0.00 45.73 2.69
2317 3628 2.440247 GAAAGGCCGGGGTCATGG 60.440 66.667 2.18 0.00 0.00 3.66
2318 3629 2.440247 GGAAAGGCCGGGGTCATG 60.440 66.667 2.18 0.00 0.00 3.07
2319 3630 3.739613 GGGAAAGGCCGGGGTCAT 61.740 66.667 2.18 0.00 37.63 3.06
2321 3632 4.426313 CTGGGAAAGGCCGGGGTC 62.426 72.222 2.18 0.00 37.63 4.46
2333 3644 2.683933 GGAGTCCTTCCGCTGGGA 60.684 66.667 0.41 0.00 41.83 4.37
2352 3663 7.757624 AGCAAAACACGAAGAAACATCTAAAAA 59.242 29.630 0.00 0.00 0.00 1.94
2353 3664 7.254852 AGCAAAACACGAAGAAACATCTAAAA 58.745 30.769 0.00 0.00 0.00 1.52
2354 3665 6.791303 AGCAAAACACGAAGAAACATCTAAA 58.209 32.000 0.00 0.00 0.00 1.85
2355 3666 6.371809 AGCAAAACACGAAGAAACATCTAA 57.628 33.333 0.00 0.00 0.00 2.10
2356 3667 6.147164 CCTAGCAAAACACGAAGAAACATCTA 59.853 38.462 0.00 0.00 0.00 1.98
2357 3668 4.900635 AGCAAAACACGAAGAAACATCT 57.099 36.364 0.00 0.00 0.00 2.90
2358 3669 5.147162 CCTAGCAAAACACGAAGAAACATC 58.853 41.667 0.00 0.00 0.00 3.06
2359 3670 4.023193 CCCTAGCAAAACACGAAGAAACAT 60.023 41.667 0.00 0.00 0.00 2.71
2360 3671 3.314080 CCCTAGCAAAACACGAAGAAACA 59.686 43.478 0.00 0.00 0.00 2.83
2361 3672 3.314357 ACCCTAGCAAAACACGAAGAAAC 59.686 43.478 0.00 0.00 0.00 2.78
2362 3673 3.547746 ACCCTAGCAAAACACGAAGAAA 58.452 40.909 0.00 0.00 0.00 2.52
2363 3674 3.202829 ACCCTAGCAAAACACGAAGAA 57.797 42.857 0.00 0.00 0.00 2.52
2364 3675 2.922740 ACCCTAGCAAAACACGAAGA 57.077 45.000 0.00 0.00 0.00 2.87
2365 3676 3.066203 ACAAACCCTAGCAAAACACGAAG 59.934 43.478 0.00 0.00 0.00 3.79
2366 3677 3.018149 ACAAACCCTAGCAAAACACGAA 58.982 40.909 0.00 0.00 0.00 3.85
2367 3678 2.356382 CACAAACCCTAGCAAAACACGA 59.644 45.455 0.00 0.00 0.00 4.35
2368 3679 2.098443 ACACAAACCCTAGCAAAACACG 59.902 45.455 0.00 0.00 0.00 4.49
2369 3680 3.793797 ACACAAACCCTAGCAAAACAC 57.206 42.857 0.00 0.00 0.00 3.32
2370 3681 4.810191 AAACACAAACCCTAGCAAAACA 57.190 36.364 0.00 0.00 0.00 2.83
2371 3682 4.201773 GCAAAACACAAACCCTAGCAAAAC 60.202 41.667 0.00 0.00 0.00 2.43
2372 3683 3.935828 GCAAAACACAAACCCTAGCAAAA 59.064 39.130 0.00 0.00 0.00 2.44
2373 3684 3.196685 AGCAAAACACAAACCCTAGCAAA 59.803 39.130 0.00 0.00 0.00 3.68
2374 3685 2.763448 AGCAAAACACAAACCCTAGCAA 59.237 40.909 0.00 0.00 0.00 3.91
2375 3686 2.360801 GAGCAAAACACAAACCCTAGCA 59.639 45.455 0.00 0.00 0.00 3.49
2376 3687 2.360801 TGAGCAAAACACAAACCCTAGC 59.639 45.455 0.00 0.00 0.00 3.42
2377 3688 3.004734 CCTGAGCAAAACACAAACCCTAG 59.995 47.826 0.00 0.00 0.00 3.02
2378 3689 2.955660 CCTGAGCAAAACACAAACCCTA 59.044 45.455 0.00 0.00 0.00 3.53
2379 3690 1.756538 CCTGAGCAAAACACAAACCCT 59.243 47.619 0.00 0.00 0.00 4.34
2380 3691 1.754226 TCCTGAGCAAAACACAAACCC 59.246 47.619 0.00 0.00 0.00 4.11
2381 3692 3.186909 GTTCCTGAGCAAAACACAAACC 58.813 45.455 0.00 0.00 0.00 3.27
2382 3693 3.843999 TGTTCCTGAGCAAAACACAAAC 58.156 40.909 0.00 0.00 0.00 2.93
2383 3694 4.159321 TCATGTTCCTGAGCAAAACACAAA 59.841 37.500 0.00 0.00 35.87 2.83
2384 3695 3.698539 TCATGTTCCTGAGCAAAACACAA 59.301 39.130 0.00 0.00 35.87 3.33
2385 3696 3.286353 TCATGTTCCTGAGCAAAACACA 58.714 40.909 0.00 0.00 35.87 3.72
2386 3697 3.893720 CTCATGTTCCTGAGCAAAACAC 58.106 45.455 0.00 0.00 36.53 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.