Multiple sequence alignment - TraesCS3A01G398300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G398300 chr3A 100.000 2820 0 0 1 2820 645541849 645544668 0.000000e+00 5208.0
1 TraesCS3A01G398300 chr3A 100.000 1520 0 0 3241 4760 645545089 645546608 0.000000e+00 2808.0
2 TraesCS3A01G398300 chr3B 89.038 2682 205 59 105 2739 669710118 669712757 0.000000e+00 3241.0
3 TraesCS3A01G398300 chr3B 92.692 1081 56 10 3300 4363 669712760 669713834 0.000000e+00 1537.0
4 TraesCS3A01G398300 chr3B 88.889 405 31 6 4364 4760 669714120 669714518 1.990000e-133 486.0
5 TraesCS3A01G398300 chr3D 92.593 2106 116 27 726 2820 507486182 507488258 0.000000e+00 2988.0
6 TraesCS3A01G398300 chr3D 92.212 963 58 8 3241 4195 507488309 507489262 0.000000e+00 1347.0
7 TraesCS3A01G398300 chr3D 91.818 550 29 7 4219 4760 507489398 507489939 0.000000e+00 752.0
8 TraesCS3A01G398300 chr3D 94.872 78 1 1 2114 2191 507768512 507768586 8.370000e-23 119.0
9 TraesCS3A01G398300 chrUn 86.454 657 70 11 971 1619 361569710 361569065 0.000000e+00 702.0
10 TraesCS3A01G398300 chrUn 94.444 36 1 1 1001 1035 68467144 68467109 2.000000e-03 54.7
11 TraesCS3A01G398300 chr2D 81.393 833 102 16 1983 2804 16268085 16267295 8.690000e-177 630.0
12 TraesCS3A01G398300 chr1A 86.939 490 50 13 1182 1665 206112018 206112499 5.420000e-149 538.0
13 TraesCS3A01G398300 chr4A 86.354 491 50 11 1182 1665 653268057 653267577 1.960000e-143 520.0
14 TraesCS3A01G398300 chr4A 86.094 489 55 12 1182 1665 409227568 409228048 9.130000e-142 514.0
15 TraesCS3A01G398300 chr4A 86.771 446 46 8 1182 1619 555995237 555995677 7.160000e-133 484.0
16 TraesCS3A01G398300 chr4A 92.308 39 1 2 1 38 560963650 560963613 2.000000e-03 54.7
17 TraesCS3A01G398300 chr7D 83.889 540 80 5 2259 2792 578158453 578158991 4.250000e-140 508.0
18 TraesCS3A01G398300 chr6B 85.918 490 43 15 1182 1665 708774616 708775085 2.560000e-137 499.0
19 TraesCS3A01G398300 chr7A 85.396 493 51 17 1182 1665 639933272 639933752 4.280000e-135 492.0
20 TraesCS3A01G398300 chr5B 78.034 824 89 40 1983 2792 338478901 338479646 7.320000e-118 435.0
21 TraesCS3A01G398300 chr5A 88.214 280 30 3 2512 2790 610215961 610216238 9.870000e-87 331.0
22 TraesCS3A01G398300 chr1B 96.774 31 1 0 8 38 25160439 25160469 9.000000e-03 52.8
23 TraesCS3A01G398300 chr1B 96.774 31 1 0 8 38 25199839 25199869 9.000000e-03 52.8
24 TraesCS3A01G398300 chr1B 96.774 31 1 0 8 38 25225280 25225310 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G398300 chr3A 645541849 645546608 4759 False 4008.000000 5208 100.000000 1 4760 2 chr3A.!!$F1 4759
1 TraesCS3A01G398300 chr3B 669710118 669714518 4400 False 1754.666667 3241 90.206333 105 4760 3 chr3B.!!$F1 4655
2 TraesCS3A01G398300 chr3D 507486182 507489939 3757 False 1695.666667 2988 92.207667 726 4760 3 chr3D.!!$F2 4034
3 TraesCS3A01G398300 chrUn 361569065 361569710 645 True 702.000000 702 86.454000 971 1619 1 chrUn.!!$R2 648
4 TraesCS3A01G398300 chr2D 16267295 16268085 790 True 630.000000 630 81.393000 1983 2804 1 chr2D.!!$R1 821
5 TraesCS3A01G398300 chr7D 578158453 578158991 538 False 508.000000 508 83.889000 2259 2792 1 chr7D.!!$F1 533
6 TraesCS3A01G398300 chr5B 338478901 338479646 745 False 435.000000 435 78.034000 1983 2792 1 chr5B.!!$F1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 165 0.245539 TGACTAGCAGGTACCGCAAC 59.754 55.0 24.11 14.78 0.00 4.17 F
896 914 0.248215 CCCGATTGCGTCTTGATTGC 60.248 55.0 0.00 0.00 35.23 3.56 F
1926 1965 0.251165 TGCTGTTTCCCCTTACCTGC 60.251 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 1954 0.603065 GCAAAACAGCAGGTAAGGGG 59.397 55.000 0.0 0.0 0.0 4.79 R
2795 2865 1.136085 CGTGTTGCTGTTGGTAATCGG 60.136 52.381 0.0 0.0 0.0 4.18 R
3925 4035 2.353357 TTCCTCATAGCCCAGCAATG 57.647 50.000 0.0 0.0 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.577110 TTGATGATGCATAGATTGAAAGTTTTC 57.423 29.630 0.00 0.00 37.69 2.29
27 28 8.963725 TGATGATGCATAGATTGAAAGTTTTCT 58.036 29.630 0.00 0.00 38.02 2.52
28 29 9.448294 GATGATGCATAGATTGAAAGTTTTCTC 57.552 33.333 0.00 0.00 38.02 2.87
29 30 7.466805 TGATGCATAGATTGAAAGTTTTCTCG 58.533 34.615 0.00 0.00 38.02 4.04
30 31 5.631026 TGCATAGATTGAAAGTTTTCTCGC 58.369 37.500 6.21 0.00 38.02 5.03
31 32 5.181056 TGCATAGATTGAAAGTTTTCTCGCA 59.819 36.000 6.21 7.96 38.02 5.10
32 33 6.086222 GCATAGATTGAAAGTTTTCTCGCAA 58.914 36.000 6.21 0.00 38.02 4.85
33 34 6.582295 GCATAGATTGAAAGTTTTCTCGCAAA 59.418 34.615 6.21 0.00 38.02 3.68
34 35 7.274250 GCATAGATTGAAAGTTTTCTCGCAAAT 59.726 33.333 6.21 0.00 38.02 2.32
35 36 9.773328 CATAGATTGAAAGTTTTCTCGCAAATA 57.227 29.630 6.21 0.00 38.02 1.40
38 39 9.185192 AGATTGAAAGTTTTCTCGCAAATAAAG 57.815 29.630 6.21 0.00 38.02 1.85
39 40 9.180678 GATTGAAAGTTTTCTCGCAAATAAAGA 57.819 29.630 6.21 0.00 38.02 2.52
40 41 8.560576 TTGAAAGTTTTCTCGCAAATAAAGAG 57.439 30.769 6.21 0.00 38.02 2.85
41 42 7.925993 TGAAAGTTTTCTCGCAAATAAAGAGA 58.074 30.769 6.21 0.00 39.03 3.10
42 43 8.402472 TGAAAGTTTTCTCGCAAATAAAGAGAA 58.598 29.630 6.21 3.35 45.76 2.87
46 47 3.270877 TCTCGCAAATAAAGAGAAGGGC 58.729 45.455 0.00 0.00 38.00 5.19
47 48 2.006888 TCGCAAATAAAGAGAAGGGCG 58.993 47.619 0.00 0.00 44.09 6.13
48 49 1.737793 CGCAAATAAAGAGAAGGGCGT 59.262 47.619 0.00 0.00 38.56 5.68
49 50 2.476185 CGCAAATAAAGAGAAGGGCGTG 60.476 50.000 0.00 0.00 38.56 5.34
50 51 2.747446 GCAAATAAAGAGAAGGGCGTGA 59.253 45.455 0.00 0.00 0.00 4.35
51 52 3.181506 GCAAATAAAGAGAAGGGCGTGAG 60.182 47.826 0.00 0.00 0.00 3.51
52 53 2.990066 ATAAAGAGAAGGGCGTGAGG 57.010 50.000 0.00 0.00 0.00 3.86
53 54 1.933021 TAAAGAGAAGGGCGTGAGGA 58.067 50.000 0.00 0.00 0.00 3.71
54 55 0.321996 AAAGAGAAGGGCGTGAGGAC 59.678 55.000 0.00 0.00 0.00 3.85
55 56 0.543174 AAGAGAAGGGCGTGAGGACT 60.543 55.000 0.00 0.00 0.00 3.85
56 57 0.543174 AGAGAAGGGCGTGAGGACTT 60.543 55.000 0.00 0.00 0.00 3.01
57 58 0.321996 GAGAAGGGCGTGAGGACTTT 59.678 55.000 0.00 0.00 0.00 2.66
58 59 0.765510 AGAAGGGCGTGAGGACTTTT 59.234 50.000 0.00 0.00 0.00 2.27
59 60 1.143073 AGAAGGGCGTGAGGACTTTTT 59.857 47.619 0.00 0.00 0.00 1.94
60 61 1.535896 GAAGGGCGTGAGGACTTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
61 62 0.765510 AGGGCGTGAGGACTTTTTCT 59.234 50.000 0.00 0.00 0.00 2.52
62 63 1.975680 AGGGCGTGAGGACTTTTTCTA 59.024 47.619 0.00 0.00 0.00 2.10
63 64 2.028020 AGGGCGTGAGGACTTTTTCTAG 60.028 50.000 0.00 0.00 0.00 2.43
64 65 2.289506 GGGCGTGAGGACTTTTTCTAGT 60.290 50.000 0.00 0.00 0.00 2.57
65 66 2.737252 GGCGTGAGGACTTTTTCTAGTG 59.263 50.000 0.00 0.00 0.00 2.74
66 67 3.391049 GCGTGAGGACTTTTTCTAGTGT 58.609 45.455 0.00 0.00 0.00 3.55
67 68 3.808174 GCGTGAGGACTTTTTCTAGTGTT 59.192 43.478 0.00 0.00 0.00 3.32
68 69 4.084485 GCGTGAGGACTTTTTCTAGTGTTC 60.084 45.833 0.00 0.00 0.00 3.18
69 70 4.148348 CGTGAGGACTTTTTCTAGTGTTCG 59.852 45.833 0.00 0.00 0.00 3.95
70 71 5.048507 GTGAGGACTTTTTCTAGTGTTCGT 58.951 41.667 0.00 0.00 0.00 3.85
71 72 5.522824 GTGAGGACTTTTTCTAGTGTTCGTT 59.477 40.000 0.00 0.00 0.00 3.85
72 73 5.522460 TGAGGACTTTTTCTAGTGTTCGTTG 59.478 40.000 0.00 0.00 0.00 4.10
73 74 5.425630 AGGACTTTTTCTAGTGTTCGTTGT 58.574 37.500 0.00 0.00 0.00 3.32
74 75 6.576185 AGGACTTTTTCTAGTGTTCGTTGTA 58.424 36.000 0.00 0.00 0.00 2.41
75 76 6.478016 AGGACTTTTTCTAGTGTTCGTTGTAC 59.522 38.462 0.00 0.00 0.00 2.90
76 77 6.478016 GGACTTTTTCTAGTGTTCGTTGTACT 59.522 38.462 0.00 0.00 0.00 2.73
77 78 7.230466 ACTTTTTCTAGTGTTCGTTGTACTG 57.770 36.000 0.00 0.00 0.00 2.74
78 79 6.815142 ACTTTTTCTAGTGTTCGTTGTACTGT 59.185 34.615 0.00 0.00 0.00 3.55
79 80 6.817270 TTTTCTAGTGTTCGTTGTACTGTC 57.183 37.500 0.00 0.00 0.00 3.51
80 81 5.503662 TTCTAGTGTTCGTTGTACTGTCA 57.496 39.130 0.00 0.00 0.00 3.58
81 82 5.104562 TCTAGTGTTCGTTGTACTGTCAG 57.895 43.478 0.00 0.00 0.00 3.51
82 83 3.795623 AGTGTTCGTTGTACTGTCAGT 57.204 42.857 10.99 10.99 0.00 3.41
83 84 3.444916 AGTGTTCGTTGTACTGTCAGTG 58.555 45.455 16.03 0.00 0.00 3.66
84 85 3.129813 AGTGTTCGTTGTACTGTCAGTGA 59.870 43.478 16.03 0.72 0.00 3.41
85 86 3.486108 GTGTTCGTTGTACTGTCAGTGAG 59.514 47.826 16.03 2.72 0.00 3.51
86 87 3.050619 GTTCGTTGTACTGTCAGTGAGG 58.949 50.000 16.03 7.33 0.00 3.86
87 88 1.611977 TCGTTGTACTGTCAGTGAGGG 59.388 52.381 16.03 1.66 0.00 4.30
88 89 1.797025 GTTGTACTGTCAGTGAGGGC 58.203 55.000 16.03 1.79 0.00 5.19
89 90 1.344763 GTTGTACTGTCAGTGAGGGCT 59.655 52.381 16.03 0.00 0.00 5.19
90 91 1.717032 TGTACTGTCAGTGAGGGCTT 58.283 50.000 16.03 0.00 0.00 4.35
91 92 2.047061 TGTACTGTCAGTGAGGGCTTT 58.953 47.619 16.03 0.00 0.00 3.51
92 93 2.438021 TGTACTGTCAGTGAGGGCTTTT 59.562 45.455 16.03 0.00 0.00 2.27
93 94 2.736670 ACTGTCAGTGAGGGCTTTTT 57.263 45.000 4.21 0.00 0.00 1.94
94 95 3.857157 ACTGTCAGTGAGGGCTTTTTA 57.143 42.857 4.21 0.00 0.00 1.52
95 96 4.373156 ACTGTCAGTGAGGGCTTTTTAT 57.627 40.909 4.21 0.00 0.00 1.40
96 97 4.729868 ACTGTCAGTGAGGGCTTTTTATT 58.270 39.130 4.21 0.00 0.00 1.40
97 98 5.876357 ACTGTCAGTGAGGGCTTTTTATTA 58.124 37.500 4.21 0.00 0.00 0.98
98 99 5.940470 ACTGTCAGTGAGGGCTTTTTATTAG 59.060 40.000 4.21 0.00 0.00 1.73
99 100 5.253330 TGTCAGTGAGGGCTTTTTATTAGG 58.747 41.667 0.00 0.00 0.00 2.69
100 101 5.222048 TGTCAGTGAGGGCTTTTTATTAGGT 60.222 40.000 0.00 0.00 0.00 3.08
101 102 5.123979 GTCAGTGAGGGCTTTTTATTAGGTG 59.876 44.000 0.00 0.00 0.00 4.00
102 103 5.010282 CAGTGAGGGCTTTTTATTAGGTGT 58.990 41.667 0.00 0.00 0.00 4.16
103 104 5.476945 CAGTGAGGGCTTTTTATTAGGTGTT 59.523 40.000 0.00 0.00 0.00 3.32
140 142 4.033251 CCCCCTCCCCTACCCACA 62.033 72.222 0.00 0.00 0.00 4.17
142 144 1.308746 CCCCTCCCCTACCCACAAT 60.309 63.158 0.00 0.00 0.00 2.71
152 154 3.308117 CCCTACCCACAATTTGACTAGCA 60.308 47.826 2.79 0.00 0.00 3.49
156 158 3.329520 ACCCACAATTTGACTAGCAGGTA 59.670 43.478 2.79 0.00 0.00 3.08
158 160 3.689649 CCACAATTTGACTAGCAGGTACC 59.310 47.826 2.73 2.73 0.00 3.34
161 163 0.970640 TTTGACTAGCAGGTACCGCA 59.029 50.000 24.11 12.98 0.00 5.69
162 164 0.970640 TTGACTAGCAGGTACCGCAA 59.029 50.000 24.11 11.13 0.00 4.85
163 165 0.245539 TGACTAGCAGGTACCGCAAC 59.754 55.000 24.11 14.78 0.00 4.17
188 190 2.350895 CTCGCCACCCAACCATCA 59.649 61.111 0.00 0.00 0.00 3.07
191 193 0.251564 TCGCCACCCAACCATCATTT 60.252 50.000 0.00 0.00 0.00 2.32
194 196 2.232452 CGCCACCCAACCATCATTTTTA 59.768 45.455 0.00 0.00 0.00 1.52
195 197 3.306364 CGCCACCCAACCATCATTTTTAA 60.306 43.478 0.00 0.00 0.00 1.52
196 198 4.622695 CGCCACCCAACCATCATTTTTAAT 60.623 41.667 0.00 0.00 0.00 1.40
197 199 4.875536 GCCACCCAACCATCATTTTTAATC 59.124 41.667 0.00 0.00 0.00 1.75
216 225 3.863407 CCCCCTTCTTCTTCTTCGG 57.137 57.895 0.00 0.00 0.00 4.30
221 230 1.362406 CTTCTTCTTCTTCGGCGCCC 61.362 60.000 23.46 2.84 0.00 6.13
240 249 4.323477 TAGCCCACCACGCACACC 62.323 66.667 0.00 0.00 0.00 4.16
246 255 4.164087 ACCACGCACACCGAACCA 62.164 61.111 0.00 0.00 41.02 3.67
247 256 3.645975 CCACGCACACCGAACCAC 61.646 66.667 0.00 0.00 41.02 4.16
248 257 2.892914 CACGCACACCGAACCACA 60.893 61.111 0.00 0.00 41.02 4.17
250 259 2.177580 ACGCACACCGAACCACAAG 61.178 57.895 0.00 0.00 41.02 3.16
251 260 2.177580 CGCACACCGAACCACAAGT 61.178 57.895 0.00 0.00 40.02 3.16
252 261 1.647084 GCACACCGAACCACAAGTC 59.353 57.895 0.00 0.00 0.00 3.01
253 262 0.814010 GCACACCGAACCACAAGTCT 60.814 55.000 0.00 0.00 0.00 3.24
276 286 1.717937 CTTTCTCCCGCAAGCGATG 59.282 57.895 16.97 6.81 42.83 3.84
277 287 1.003839 TTTCTCCCGCAAGCGATGT 60.004 52.632 16.97 0.00 42.83 3.06
284 294 4.166011 GCAAGCGATGTCACGGGC 62.166 66.667 0.00 0.00 0.00 6.13
298 308 4.090057 GGGCAGCTGCGACGTTTC 62.090 66.667 31.19 15.85 43.26 2.78
300 310 4.430423 GCAGCTGCGACGTTTCCG 62.430 66.667 25.23 0.00 40.83 4.30
313 323 1.833492 TTTCCGTCCTCACCGGTCA 60.833 57.895 2.59 0.00 45.63 4.02
320 330 1.185618 TCCTCACCGGTCAAGGACAG 61.186 60.000 25.06 4.69 34.26 3.51
326 336 2.250939 CGGTCAAGGACAGCGCAAA 61.251 57.895 11.47 0.00 33.68 3.68
330 340 0.874390 TCAAGGACAGCGCAAACATC 59.126 50.000 11.47 0.00 0.00 3.06
331 341 0.592637 CAAGGACAGCGCAAACATCA 59.407 50.000 11.47 0.00 0.00 3.07
332 342 1.001487 CAAGGACAGCGCAAACATCAA 60.001 47.619 11.47 0.00 0.00 2.57
363 373 0.526662 CTCCGTCTCGTAGCTTTGGT 59.473 55.000 0.00 0.00 0.00 3.67
369 379 1.544691 TCTCGTAGCTTTGGTCCTCAC 59.455 52.381 0.00 0.00 0.00 3.51
374 384 3.564225 CGTAGCTTTGGTCCTCACTTTTT 59.436 43.478 0.00 0.00 0.00 1.94
401 411 3.078594 ACAAAATCAACTTGCACCGAC 57.921 42.857 0.00 0.00 0.00 4.79
405 415 1.800805 ATCAACTTGCACCGACTCTG 58.199 50.000 0.00 0.00 0.00 3.35
406 416 0.750249 TCAACTTGCACCGACTCTGA 59.250 50.000 0.00 0.00 0.00 3.27
413 423 2.416747 TGCACCGACTCTGATTTTCAG 58.583 47.619 0.00 0.00 45.59 3.02
421 431 4.387256 CGACTCTGATTTTCAGGTGACTTC 59.613 45.833 4.78 0.00 44.39 3.01
426 436 5.528690 TCTGATTTTCAGGTGACTTCAGTTG 59.471 40.000 4.78 0.00 44.39 3.16
439 449 6.586082 GTGACTTCAGTTGTCAAACATGTTTT 59.414 34.615 21.10 3.05 44.63 2.43
440 450 7.753132 GTGACTTCAGTTGTCAAACATGTTTTA 59.247 33.333 21.10 11.14 44.63 1.52
460 473 8.536175 TGTTTTATTTATTTAGAAAGGGCCCAG 58.464 33.333 27.56 0.00 0.00 4.45
461 474 6.724893 TTATTTATTTAGAAAGGGCCCAGC 57.275 37.500 27.56 12.87 0.00 4.85
468 481 2.248248 AGAAAGGGCCCAGCTTTTTAC 58.752 47.619 27.56 9.27 0.00 2.01
470 483 2.325661 AAGGGCCCAGCTTTTTACAT 57.674 45.000 27.56 0.00 0.00 2.29
472 485 0.536724 GGGCCCAGCTTTTTACATGG 59.463 55.000 19.95 0.00 0.00 3.66
475 488 2.171003 GCCCAGCTTTTTACATGGAGT 58.829 47.619 0.00 0.00 34.60 3.85
477 490 3.954258 GCCCAGCTTTTTACATGGAGTAT 59.046 43.478 0.00 0.00 34.60 2.12
479 492 4.273480 CCCAGCTTTTTACATGGAGTATCG 59.727 45.833 0.00 0.00 34.60 2.92
480 493 4.260784 CCAGCTTTTTACATGGAGTATCGC 60.261 45.833 0.00 0.00 34.60 4.58
495 510 0.937304 ATCGCGTGGGAATCGATTTG 59.063 50.000 12.81 1.94 39.59 2.32
524 539 5.393124 ACAGAATAACATGCATTTCACACG 58.607 37.500 10.62 0.00 0.00 4.49
540 555 4.123506 TCACACGTTTCTCAAAGCACATA 58.876 39.130 0.00 0.00 0.00 2.29
555 570 9.420118 TCAAAGCACATATCAAAATATACCCTT 57.580 29.630 0.00 0.00 0.00 3.95
568 583 1.555967 TACCCTTTTTCTGCATGGGC 58.444 50.000 0.00 0.00 41.44 5.36
606 622 3.034635 ACAGACCGAGCCTATCAATTCT 58.965 45.455 0.00 0.00 0.00 2.40
607 623 3.452627 ACAGACCGAGCCTATCAATTCTT 59.547 43.478 0.00 0.00 0.00 2.52
611 627 5.364157 AGACCGAGCCTATCAATTCTTTAGT 59.636 40.000 0.00 0.00 0.00 2.24
615 631 8.211629 ACCGAGCCTATCAATTCTTTAGTTTAT 58.788 33.333 0.00 0.00 0.00 1.40
616 632 8.499162 CCGAGCCTATCAATTCTTTAGTTTATG 58.501 37.037 0.00 0.00 0.00 1.90
617 633 8.012241 CGAGCCTATCAATTCTTTAGTTTATGC 58.988 37.037 0.00 0.00 0.00 3.14
629 645 9.640963 TTCTTTAGTTTATGCTACTTCTCTGTC 57.359 33.333 0.00 0.00 0.00 3.51
630 646 8.251721 TCTTTAGTTTATGCTACTTCTCTGTCC 58.748 37.037 0.00 0.00 0.00 4.02
631 647 7.719871 TTAGTTTATGCTACTTCTCTGTCCT 57.280 36.000 0.00 0.00 0.00 3.85
632 648 6.215495 AGTTTATGCTACTTCTCTGTCCTC 57.785 41.667 0.00 0.00 0.00 3.71
634 650 5.584253 TTATGCTACTTCTCTGTCCTCAC 57.416 43.478 0.00 0.00 0.00 3.51
637 653 3.834813 TGCTACTTCTCTGTCCTCACAAT 59.165 43.478 0.00 0.00 29.82 2.71
638 654 5.016831 TGCTACTTCTCTGTCCTCACAATA 58.983 41.667 0.00 0.00 29.82 1.90
639 655 5.658634 TGCTACTTCTCTGTCCTCACAATAT 59.341 40.000 0.00 0.00 29.82 1.28
640 656 6.833933 TGCTACTTCTCTGTCCTCACAATATA 59.166 38.462 0.00 0.00 29.82 0.86
642 658 7.650104 GCTACTTCTCTGTCCTCACAATATAAC 59.350 40.741 0.00 0.00 29.82 1.89
644 660 8.083828 ACTTCTCTGTCCTCACAATATAACAT 57.916 34.615 0.00 0.00 29.82 2.71
646 662 7.423844 TCTCTGTCCTCACAATATAACATGT 57.576 36.000 0.00 0.00 29.82 3.21
647 663 7.851228 TCTCTGTCCTCACAATATAACATGTT 58.149 34.615 16.68 16.68 29.82 2.71
648 664 8.321353 TCTCTGTCCTCACAATATAACATGTTT 58.679 33.333 17.78 7.40 29.82 2.83
685 701 9.846248 AAACAGCTTGTAAAATCATCTTATGTC 57.154 29.630 0.00 0.00 0.00 3.06
686 702 8.565896 ACAGCTTGTAAAATCATCTTATGTCA 57.434 30.769 0.00 0.00 0.00 3.58
687 703 9.182214 ACAGCTTGTAAAATCATCTTATGTCAT 57.818 29.630 0.00 0.00 0.00 3.06
688 704 9.447040 CAGCTTGTAAAATCATCTTATGTCATG 57.553 33.333 0.00 0.00 0.00 3.07
690 706 9.661187 GCTTGTAAAATCATCTTATGTCATGAG 57.339 33.333 0.00 0.00 32.53 2.90
701 717 6.614657 TCTTATGTCATGAGATGAGGGAGTA 58.385 40.000 20.30 2.70 40.53 2.59
708 724 3.570540 TGAGATGAGGGAGTAGATGGTG 58.429 50.000 0.00 0.00 0.00 4.17
710 726 4.168088 TGAGATGAGGGAGTAGATGGTGTA 59.832 45.833 0.00 0.00 0.00 2.90
711 727 4.475345 AGATGAGGGAGTAGATGGTGTAC 58.525 47.826 0.00 0.00 0.00 2.90
714 730 4.684724 TGAGGGAGTAGATGGTGTACTTT 58.315 43.478 0.00 0.00 30.60 2.66
761 777 8.040716 ACCGGTAGAGAACTGATTTTATTTTG 57.959 34.615 4.49 0.00 36.47 2.44
763 779 8.726988 CCGGTAGAGAACTGATTTTATTTTGAA 58.273 33.333 0.00 0.00 36.47 2.69
819 836 1.113517 TCCTATACCTGCCAGGACGC 61.114 60.000 19.90 0.00 37.67 5.19
896 914 0.248215 CCCGATTGCGTCTTGATTGC 60.248 55.000 0.00 0.00 35.23 3.56
905 923 2.092838 GCGTCTTGATTGCACTCTGTAC 59.907 50.000 5.59 0.41 0.00 2.90
906 924 3.579709 CGTCTTGATTGCACTCTGTACT 58.420 45.455 5.59 0.00 0.00 2.73
907 925 4.733850 CGTCTTGATTGCACTCTGTACTA 58.266 43.478 5.59 0.00 0.00 1.82
908 926 4.795795 CGTCTTGATTGCACTCTGTACTAG 59.204 45.833 5.59 0.00 0.00 2.57
915 933 5.791367 TTGCACTCTGTACTAGTACTACG 57.209 43.478 28.56 19.37 37.00 3.51
920 938 5.232626 CACTCTGTACTAGTACTACGCTCAG 59.767 48.000 28.56 17.80 37.00 3.35
921 939 4.118410 TCTGTACTAGTACTACGCTCAGC 58.882 47.826 28.56 4.10 37.00 4.26
924 942 2.203401 ACTAGTACTACGCTCAGCTCG 58.797 52.381 0.00 0.00 0.00 5.03
942 960 1.079612 GGAAACTACGACCCACCCG 60.080 63.158 0.00 0.00 0.00 5.28
1338 1357 3.717707 GGAGATTCGATTCGATTCACCA 58.282 45.455 27.56 9.56 42.19 4.17
1460 1480 6.237384 CGAACATCATGCTTAATTTTGTGCTC 60.237 38.462 0.00 0.00 0.00 4.26
1461 1481 6.276832 ACATCATGCTTAATTTTGTGCTCT 57.723 33.333 0.00 0.00 0.00 4.09
1462 1482 7.395190 ACATCATGCTTAATTTTGTGCTCTA 57.605 32.000 0.00 0.00 0.00 2.43
1464 1484 9.123902 ACATCATGCTTAATTTTGTGCTCTATA 57.876 29.630 0.00 0.00 0.00 1.31
1471 1491 8.129211 GCTTAATTTTGTGCTCTATATCGGTTT 58.871 33.333 0.00 0.00 0.00 3.27
1488 1508 3.181520 CGGTTTCTGGTCGATGTGAATTC 60.182 47.826 0.00 0.00 0.00 2.17
1507 1527 2.434884 CTCACCGGCGTGCTTCAT 60.435 61.111 6.01 0.00 40.04 2.57
1517 1537 1.599419 GCGTGCTTCATTTTCCGTTGT 60.599 47.619 0.00 0.00 0.00 3.32
1518 1538 2.307049 CGTGCTTCATTTTCCGTTGTC 58.693 47.619 0.00 0.00 0.00 3.18
1619 1645 1.228583 TCCGCAGAGACCTCACTGT 60.229 57.895 0.00 0.00 37.00 3.55
1620 1646 1.214062 CCGCAGAGACCTCACTGTC 59.786 63.158 0.00 0.00 37.00 3.51
1621 1647 1.527433 CCGCAGAGACCTCACTGTCA 61.527 60.000 0.00 0.00 37.73 3.58
1622 1648 0.387878 CGCAGAGACCTCACTGTCAC 60.388 60.000 0.00 0.00 37.73 3.67
1623 1649 0.965439 GCAGAGACCTCACTGTCACT 59.035 55.000 0.00 0.00 36.75 3.41
1624 1650 2.721274 CAGAGACCTCACTGTCACTG 57.279 55.000 4.64 4.64 43.89 3.66
1665 1691 4.314522 TCATTAATCCTGCCCAAGTTCA 57.685 40.909 0.00 0.00 0.00 3.18
1733 1759 5.788531 CGTGTATTCTTCGTTGATTTTGGTC 59.211 40.000 0.00 0.00 0.00 4.02
1737 1763 7.876068 TGTATTCTTCGTTGATTTTGGTCTAGT 59.124 33.333 0.00 0.00 0.00 2.57
1802 1828 0.680061 ACTGTTCGACCTCTTCCACC 59.320 55.000 0.00 0.00 0.00 4.61
1843 1869 2.441001 CCTTCTGGGCTCATGAGGTATT 59.559 50.000 23.89 0.00 0.00 1.89
1856 1882 5.245977 TCATGAGGTATTGTGTCAGAACTGA 59.754 40.000 0.00 0.00 37.24 3.41
1878 1917 7.333672 ACTGACGGATTGAACTCTAAAATTACC 59.666 37.037 0.00 0.00 0.00 2.85
1881 1920 6.373495 ACGGATTGAACTCTAAAATTACCCAC 59.627 38.462 0.00 0.00 0.00 4.61
1886 1925 6.110707 TGAACTCTAAAATTACCCACCGATC 58.889 40.000 0.00 0.00 0.00 3.69
1915 1954 4.095782 TGTCACTAACCTTTGTGCTGTTTC 59.904 41.667 0.00 0.00 34.61 2.78
1926 1965 0.251165 TGCTGTTTCCCCTTACCTGC 60.251 55.000 0.00 0.00 0.00 4.85
1972 2011 1.543941 GCTGCTCGATCGGTCATTCG 61.544 60.000 16.41 3.52 36.72 3.34
2039 2078 7.156876 TGACCTAATGAATTGGATTGTTGTC 57.843 36.000 0.00 0.00 0.00 3.18
2075 2116 6.785488 TGCTAATTTAGTAATCCATGAGCG 57.215 37.500 5.38 0.00 0.00 5.03
2112 2153 4.842531 TTCCATTGCTAAGTCTCCATCA 57.157 40.909 0.00 0.00 0.00 3.07
2235 2277 3.955650 ACGTTACAGTAAGCATCTGGT 57.044 42.857 0.00 0.00 37.25 4.00
2267 2311 5.465390 TCATTAGGTGTAGCGCATTATTGTC 59.535 40.000 11.47 0.00 0.00 3.18
2268 2312 3.260475 AGGTGTAGCGCATTATTGTCA 57.740 42.857 11.47 0.00 0.00 3.58
2304 2348 6.969993 ATTAGTGGTTTCTTTTGTTGGCTA 57.030 33.333 0.00 0.00 0.00 3.93
2317 2363 2.289565 GTTGGCTATAGCACCTGAACC 58.710 52.381 25.53 6.72 44.36 3.62
2318 2364 0.464036 TGGCTATAGCACCTGAACCG 59.536 55.000 25.53 0.00 44.36 4.44
2338 2384 8.138712 TGAACCGTTGTTATTCAAATTAGCTTT 58.861 29.630 0.00 0.00 37.81 3.51
2348 2394 9.691362 TTATTCAAATTAGCTTTGTTTCCTGAC 57.309 29.630 0.00 0.00 43.90 3.51
2397 2443 5.676744 CGAATTGTAGTGCGTATGAATTTGG 59.323 40.000 0.00 0.00 0.00 3.28
2795 2865 9.811995 TGACATGAAGTACTATTAATGTGGTAC 57.188 33.333 14.03 14.67 34.88 3.34
2814 2912 1.877443 ACCGATTACCAACAGCAACAC 59.123 47.619 0.00 0.00 0.00 3.32
2816 2914 1.529438 CGATTACCAACAGCAACACGT 59.471 47.619 0.00 0.00 0.00 4.49
3268 3366 9.840427 GATAGTTGCAGTTACAATGTTACATTT 57.160 29.630 7.97 3.38 0.00 2.32
3380 3479 4.771577 TGAATGGAATGGCATAACTGTGTT 59.228 37.500 0.00 0.00 0.00 3.32
3398 3501 4.126437 GTGTTTGGGAAATTTTGGTCTGG 58.874 43.478 0.00 0.00 0.00 3.86
3428 3531 4.973168 ACTGTCCAGCTTACTTTCATTCA 58.027 39.130 0.00 0.00 0.00 2.57
3431 3534 6.491403 ACTGTCCAGCTTACTTTCATTCAATT 59.509 34.615 0.00 0.00 0.00 2.32
3501 3604 2.140717 CGTTGGTTAGGTTCCACTGTC 58.859 52.381 0.00 0.00 34.45 3.51
3563 3666 4.582701 TGGAATACCTGCAAGTGTTTTG 57.417 40.909 0.00 0.00 37.04 2.44
3592 3695 9.373603 TCAAAATGCAAATCTCTTCATAATTGG 57.626 29.630 0.00 0.00 0.00 3.16
3596 3699 5.185442 TGCAAATCTCTTCATAATTGGCACA 59.815 36.000 0.00 0.00 35.06 4.57
3699 3805 5.006746 GGCAATGTACAAGAACCTATCGAAG 59.993 44.000 0.00 0.00 0.00 3.79
3702 3808 4.978186 TGTACAAGAACCTATCGAAGTCG 58.022 43.478 0.00 0.00 41.45 4.18
3760 3866 6.937436 ATGATCCCATCGGTAAGTTTTAAC 57.063 37.500 0.00 0.00 0.00 2.01
3925 4035 6.328641 TCTTTACATCCTAAGATACCGAGC 57.671 41.667 0.00 0.00 0.00 5.03
3932 4042 3.062763 CCTAAGATACCGAGCATTGCTG 58.937 50.000 17.51 5.08 39.88 4.41
4011 4122 2.503061 CTGGGCACTGGAGATCCG 59.497 66.667 0.00 0.00 39.43 4.18
4024 4135 0.616891 AGATCCGGCTAAAACGGGTT 59.383 50.000 0.00 0.00 46.49 4.11
4065 4176 4.822036 TTGTAAAGGACAACATTCCACG 57.178 40.909 0.00 0.00 43.30 4.94
4068 4179 4.641094 TGTAAAGGACAACATTCCACGTTT 59.359 37.500 0.00 0.00 38.25 3.60
4076 4187 4.169508 CAACATTCCACGTTTGAACAACA 58.830 39.130 0.00 0.00 0.00 3.33
4106 4220 9.834628 TTCGATTATGTTCTGATTTGTAAAACC 57.165 29.630 0.00 0.00 0.00 3.27
4124 4238 3.845781 ACCGCTGGATATCAAACTCAT 57.154 42.857 4.83 0.00 0.00 2.90
4125 4239 3.470709 ACCGCTGGATATCAAACTCATG 58.529 45.455 4.83 0.00 0.00 3.07
4134 4249 9.334947 CTGGATATCAAACTCATGTTACTCATT 57.665 33.333 4.83 0.00 34.96 2.57
4135 4250 9.112725 TGGATATCAAACTCATGTTACTCATTG 57.887 33.333 4.83 0.00 34.96 2.82
4136 4251 8.072567 GGATATCAAACTCATGTTACTCATTGC 58.927 37.037 4.83 0.00 34.96 3.56
4137 4252 6.822667 ATCAAACTCATGTTACTCATTGCA 57.177 33.333 0.00 0.00 34.96 4.08
4217 4444 3.925299 GGCCTGTCTAAACGTTTCTAGTC 59.075 47.826 18.42 8.78 0.00 2.59
4250 4477 0.310543 GTCGCATGCAGTTTGTTCCA 59.689 50.000 19.57 0.00 0.00 3.53
4251 4478 1.068333 GTCGCATGCAGTTTGTTCCAT 60.068 47.619 19.57 0.00 0.00 3.41
4324 4551 7.935338 TCTTGAATGAAAAATTGAGTTCAGC 57.065 32.000 5.89 2.55 37.19 4.26
4339 4566 3.693085 AGTTCAGCTGCCAAATAGTGATG 59.307 43.478 9.47 0.00 0.00 3.07
4484 4996 2.406401 GTGCTGGTGATGCGCATC 59.594 61.111 37.43 37.43 40.28 3.91
4550 5062 3.964688 TGATGTATCACCGGGTCATACTT 59.035 43.478 19.94 14.58 0.00 2.24
4551 5063 5.141910 TGATGTATCACCGGGTCATACTTA 58.858 41.667 19.94 3.55 0.00 2.24
4552 5064 4.924305 TGTATCACCGGGTCATACTTAC 57.076 45.455 19.94 0.00 0.00 2.34
4582 5101 5.018809 AGATTAGTTTGTACTACCCCGTGA 58.981 41.667 0.00 0.00 36.61 4.35
4604 5123 9.516314 CGTGATCAACACTAAGATCTGTAATAA 57.484 33.333 0.00 0.00 46.24 1.40
4640 5159 4.751767 TTCAAACTTGTTTCAGGGCAAT 57.248 36.364 0.00 0.00 0.00 3.56
4706 5225 1.553704 ACCAACCTACTCGGATGAACC 59.446 52.381 0.00 0.00 37.76 3.62
4719 5238 2.422093 GGATGAACCCCAGGAGACATTC 60.422 54.545 0.00 0.00 0.00 2.67
4746 5265 1.202417 AGGGTATCGTGCGAACTCATG 60.202 52.381 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.577110 GAAAACTTTCAATCTATGCATCATCAA 57.423 29.630 0.19 0.00 37.15 2.57
1 2 8.963725 AGAAAACTTTCAATCTATGCATCATCA 58.036 29.630 0.19 0.00 39.61 3.07
2 3 9.448294 GAGAAAACTTTCAATCTATGCATCATC 57.552 33.333 0.19 0.00 39.61 2.92
3 4 8.127327 CGAGAAAACTTTCAATCTATGCATCAT 58.873 33.333 0.19 0.00 39.61 2.45
4 5 7.466805 CGAGAAAACTTTCAATCTATGCATCA 58.533 34.615 0.19 0.00 39.61 3.07
5 6 6.413235 GCGAGAAAACTTTCAATCTATGCATC 59.587 38.462 0.19 0.00 39.61 3.91
6 7 6.127925 TGCGAGAAAACTTTCAATCTATGCAT 60.128 34.615 3.79 3.79 39.61 3.96
7 8 5.181056 TGCGAGAAAACTTTCAATCTATGCA 59.819 36.000 5.07 0.00 39.61 3.96
8 9 5.631026 TGCGAGAAAACTTTCAATCTATGC 58.369 37.500 5.07 0.00 39.61 3.14
9 10 8.679288 ATTTGCGAGAAAACTTTCAATCTATG 57.321 30.769 5.07 0.00 39.61 2.23
12 13 9.185192 CTTTATTTGCGAGAAAACTTTCAATCT 57.815 29.630 5.07 0.00 39.61 2.40
13 14 9.180678 TCTTTATTTGCGAGAAAACTTTCAATC 57.819 29.630 5.07 0.00 39.61 2.67
14 15 9.185192 CTCTTTATTTGCGAGAAAACTTTCAAT 57.815 29.630 5.07 0.00 39.61 2.57
15 16 8.402472 TCTCTTTATTTGCGAGAAAACTTTCAA 58.598 29.630 5.07 0.00 39.61 2.69
16 17 7.925993 TCTCTTTATTTGCGAGAAAACTTTCA 58.074 30.769 5.07 0.00 39.61 2.69
17 18 8.782533 TTCTCTTTATTTGCGAGAAAACTTTC 57.217 30.769 0.00 0.00 39.91 2.62
18 19 7.862873 CCTTCTCTTTATTTGCGAGAAAACTTT 59.137 33.333 0.00 0.00 41.62 2.66
19 20 7.363431 CCTTCTCTTTATTTGCGAGAAAACTT 58.637 34.615 0.00 0.00 41.62 2.66
20 21 6.072452 CCCTTCTCTTTATTTGCGAGAAAACT 60.072 38.462 0.00 0.00 41.62 2.66
21 22 6.086871 CCCTTCTCTTTATTTGCGAGAAAAC 58.913 40.000 0.00 0.00 41.62 2.43
22 23 5.335661 GCCCTTCTCTTTATTTGCGAGAAAA 60.336 40.000 0.00 0.00 41.62 2.29
23 24 4.156008 GCCCTTCTCTTTATTTGCGAGAAA 59.844 41.667 0.00 0.00 41.62 2.52
24 25 3.689649 GCCCTTCTCTTTATTTGCGAGAA 59.310 43.478 0.00 0.00 40.40 2.87
25 26 3.270877 GCCCTTCTCTTTATTTGCGAGA 58.729 45.455 0.00 0.00 32.36 4.04
26 27 2.030946 CGCCCTTCTCTTTATTTGCGAG 59.969 50.000 0.00 0.00 43.07 5.03
27 28 2.006888 CGCCCTTCTCTTTATTTGCGA 58.993 47.619 0.00 0.00 43.07 5.10
28 29 1.737793 ACGCCCTTCTCTTTATTTGCG 59.262 47.619 0.00 0.00 45.59 4.85
29 30 2.747446 TCACGCCCTTCTCTTTATTTGC 59.253 45.455 0.00 0.00 0.00 3.68
30 31 3.375299 CCTCACGCCCTTCTCTTTATTTG 59.625 47.826 0.00 0.00 0.00 2.32
31 32 3.263425 TCCTCACGCCCTTCTCTTTATTT 59.737 43.478 0.00 0.00 0.00 1.40
32 33 2.838202 TCCTCACGCCCTTCTCTTTATT 59.162 45.455 0.00 0.00 0.00 1.40
33 34 2.168728 GTCCTCACGCCCTTCTCTTTAT 59.831 50.000 0.00 0.00 0.00 1.40
34 35 1.549170 GTCCTCACGCCCTTCTCTTTA 59.451 52.381 0.00 0.00 0.00 1.85
35 36 0.321996 GTCCTCACGCCCTTCTCTTT 59.678 55.000 0.00 0.00 0.00 2.52
36 37 0.543174 AGTCCTCACGCCCTTCTCTT 60.543 55.000 0.00 0.00 0.00 2.85
37 38 0.543174 AAGTCCTCACGCCCTTCTCT 60.543 55.000 0.00 0.00 0.00 3.10
38 39 0.321996 AAAGTCCTCACGCCCTTCTC 59.678 55.000 0.00 0.00 0.00 2.87
39 40 0.765510 AAAAGTCCTCACGCCCTTCT 59.234 50.000 0.00 0.00 0.00 2.85
40 41 1.535896 GAAAAAGTCCTCACGCCCTTC 59.464 52.381 0.00 0.00 0.00 3.46
41 42 1.143073 AGAAAAAGTCCTCACGCCCTT 59.857 47.619 0.00 0.00 0.00 3.95
42 43 0.765510 AGAAAAAGTCCTCACGCCCT 59.234 50.000 0.00 0.00 0.00 5.19
43 44 2.289506 ACTAGAAAAAGTCCTCACGCCC 60.290 50.000 0.00 0.00 0.00 6.13
44 45 2.737252 CACTAGAAAAAGTCCTCACGCC 59.263 50.000 0.00 0.00 0.00 5.68
45 46 3.391049 ACACTAGAAAAAGTCCTCACGC 58.609 45.455 0.00 0.00 0.00 5.34
46 47 4.148348 CGAACACTAGAAAAAGTCCTCACG 59.852 45.833 0.00 0.00 0.00 4.35
47 48 5.048507 ACGAACACTAGAAAAAGTCCTCAC 58.951 41.667 0.00 0.00 0.00 3.51
48 49 5.272283 ACGAACACTAGAAAAAGTCCTCA 57.728 39.130 0.00 0.00 0.00 3.86
49 50 5.522824 ACAACGAACACTAGAAAAAGTCCTC 59.477 40.000 0.00 0.00 0.00 3.71
50 51 5.425630 ACAACGAACACTAGAAAAAGTCCT 58.574 37.500 0.00 0.00 0.00 3.85
51 52 5.729974 ACAACGAACACTAGAAAAAGTCC 57.270 39.130 0.00 0.00 0.00 3.85
52 53 7.009907 ACAGTACAACGAACACTAGAAAAAGTC 59.990 37.037 0.00 0.00 0.00 3.01
53 54 6.815142 ACAGTACAACGAACACTAGAAAAAGT 59.185 34.615 0.00 0.00 0.00 2.66
54 55 7.009815 TGACAGTACAACGAACACTAGAAAAAG 59.990 37.037 0.00 0.00 0.00 2.27
55 56 6.812656 TGACAGTACAACGAACACTAGAAAAA 59.187 34.615 0.00 0.00 0.00 1.94
56 57 6.331845 TGACAGTACAACGAACACTAGAAAA 58.668 36.000 0.00 0.00 0.00 2.29
57 58 5.893687 TGACAGTACAACGAACACTAGAAA 58.106 37.500 0.00 0.00 0.00 2.52
58 59 5.066893 ACTGACAGTACAACGAACACTAGAA 59.933 40.000 6.24 0.00 0.00 2.10
59 60 4.577693 ACTGACAGTACAACGAACACTAGA 59.422 41.667 6.24 0.00 0.00 2.43
60 61 4.675565 CACTGACAGTACAACGAACACTAG 59.324 45.833 8.02 0.00 0.00 2.57
61 62 4.336153 TCACTGACAGTACAACGAACACTA 59.664 41.667 8.02 0.00 0.00 2.74
62 63 3.129813 TCACTGACAGTACAACGAACACT 59.870 43.478 8.02 0.00 0.00 3.55
63 64 3.441163 TCACTGACAGTACAACGAACAC 58.559 45.455 8.02 0.00 0.00 3.32
64 65 3.490249 CCTCACTGACAGTACAACGAACA 60.490 47.826 8.02 0.00 0.00 3.18
65 66 3.050619 CCTCACTGACAGTACAACGAAC 58.949 50.000 8.02 0.00 0.00 3.95
66 67 2.035449 CCCTCACTGACAGTACAACGAA 59.965 50.000 8.02 0.00 0.00 3.85
67 68 1.611977 CCCTCACTGACAGTACAACGA 59.388 52.381 8.02 0.00 0.00 3.85
68 69 1.935300 GCCCTCACTGACAGTACAACG 60.935 57.143 8.02 0.00 0.00 4.10
69 70 1.344763 AGCCCTCACTGACAGTACAAC 59.655 52.381 8.02 0.00 0.00 3.32
70 71 1.717032 AGCCCTCACTGACAGTACAA 58.283 50.000 8.02 0.00 0.00 2.41
71 72 1.717032 AAGCCCTCACTGACAGTACA 58.283 50.000 8.02 0.00 0.00 2.90
72 73 2.841442 AAAGCCCTCACTGACAGTAC 57.159 50.000 8.02 0.00 0.00 2.73
73 74 3.857157 AAAAAGCCCTCACTGACAGTA 57.143 42.857 8.02 0.00 0.00 2.74
74 75 2.736670 AAAAAGCCCTCACTGACAGT 57.263 45.000 1.07 1.07 0.00 3.55
75 76 5.355350 CCTAATAAAAAGCCCTCACTGACAG 59.645 44.000 0.00 0.00 0.00 3.51
76 77 5.222048 ACCTAATAAAAAGCCCTCACTGACA 60.222 40.000 0.00 0.00 0.00 3.58
77 78 5.123979 CACCTAATAAAAAGCCCTCACTGAC 59.876 44.000 0.00 0.00 0.00 3.51
78 79 5.222048 ACACCTAATAAAAAGCCCTCACTGA 60.222 40.000 0.00 0.00 0.00 3.41
79 80 5.010282 ACACCTAATAAAAAGCCCTCACTG 58.990 41.667 0.00 0.00 0.00 3.66
80 81 5.256806 ACACCTAATAAAAAGCCCTCACT 57.743 39.130 0.00 0.00 0.00 3.41
81 82 5.977489 AACACCTAATAAAAAGCCCTCAC 57.023 39.130 0.00 0.00 0.00 3.51
82 83 7.235804 AGTTAACACCTAATAAAAAGCCCTCA 58.764 34.615 8.61 0.00 0.00 3.86
83 84 7.392393 TGAGTTAACACCTAATAAAAAGCCCTC 59.608 37.037 8.61 0.00 0.00 4.30
84 85 7.235804 TGAGTTAACACCTAATAAAAAGCCCT 58.764 34.615 8.61 0.00 0.00 5.19
85 86 7.457024 TGAGTTAACACCTAATAAAAAGCCC 57.543 36.000 8.61 0.00 0.00 5.19
86 87 9.999009 GTATGAGTTAACACCTAATAAAAAGCC 57.001 33.333 8.61 0.00 0.00 4.35
87 88 9.999009 GGTATGAGTTAACACCTAATAAAAAGC 57.001 33.333 8.61 0.00 0.00 3.51
93 94 9.537192 CGATTTGGTATGAGTTAACACCTAATA 57.463 33.333 16.73 1.68 36.87 0.98
94 95 8.044908 ACGATTTGGTATGAGTTAACACCTAAT 58.955 33.333 16.72 16.72 38.59 1.73
95 96 7.388437 ACGATTTGGTATGAGTTAACACCTAA 58.612 34.615 8.61 9.80 31.90 2.69
96 97 6.938507 ACGATTTGGTATGAGTTAACACCTA 58.061 36.000 8.61 0.75 32.04 3.08
97 98 5.801380 ACGATTTGGTATGAGTTAACACCT 58.199 37.500 8.61 0.00 32.04 4.00
98 99 5.220340 CGACGATTTGGTATGAGTTAACACC 60.220 44.000 8.61 7.12 0.00 4.16
99 100 5.723135 GCGACGATTTGGTATGAGTTAACAC 60.723 44.000 8.61 1.71 0.00 3.32
100 101 4.327898 GCGACGATTTGGTATGAGTTAACA 59.672 41.667 8.61 0.00 0.00 2.41
101 102 4.260091 GGCGACGATTTGGTATGAGTTAAC 60.260 45.833 0.00 0.00 0.00 2.01
102 103 3.866910 GGCGACGATTTGGTATGAGTTAA 59.133 43.478 0.00 0.00 0.00 2.01
103 104 3.450578 GGCGACGATTTGGTATGAGTTA 58.549 45.455 0.00 0.00 0.00 2.24
114 115 3.793888 GGGAGGGGGCGACGATTT 61.794 66.667 0.00 0.00 0.00 2.17
133 135 3.329520 ACCTGCTAGTCAAATTGTGGGTA 59.670 43.478 0.00 0.00 0.00 3.69
140 142 2.027561 TGCGGTACCTGCTAGTCAAATT 60.028 45.455 23.03 0.00 0.00 1.82
142 144 0.970640 TGCGGTACCTGCTAGTCAAA 59.029 50.000 23.03 4.95 0.00 2.69
169 171 4.740822 ATGGTTGGGTGGCGAGGC 62.741 66.667 0.00 0.00 0.00 4.70
171 173 0.680921 AATGATGGTTGGGTGGCGAG 60.681 55.000 0.00 0.00 0.00 5.03
176 178 5.427378 GGGATTAAAAATGATGGTTGGGTG 58.573 41.667 0.00 0.00 0.00 4.61
177 179 4.473196 GGGGATTAAAAATGATGGTTGGGT 59.527 41.667 0.00 0.00 0.00 4.51
203 205 1.375523 GGGCGCCGAAGAAGAAGAA 60.376 57.895 22.54 0.00 0.00 2.52
223 232 4.323477 GGTGTGCGTGGTGGGCTA 62.323 66.667 0.00 0.00 0.00 3.93
234 243 0.814010 AGACTTGTGGTTCGGTGTGC 60.814 55.000 0.00 0.00 0.00 4.57
240 249 0.039074 AGCTCGAGACTTGTGGTTCG 60.039 55.000 18.75 0.00 33.30 3.95
246 255 1.273886 GGGAGAAAGCTCGAGACTTGT 59.726 52.381 18.75 6.44 42.25 3.16
247 256 1.734047 CGGGAGAAAGCTCGAGACTTG 60.734 57.143 18.75 2.75 42.25 3.16
248 257 0.528470 CGGGAGAAAGCTCGAGACTT 59.472 55.000 18.75 15.82 42.25 3.01
250 259 1.517475 GCGGGAGAAAGCTCGAGAC 60.517 63.158 18.75 7.74 42.25 3.36
251 260 1.532604 TTGCGGGAGAAAGCTCGAGA 61.533 55.000 18.75 0.00 42.25 4.04
252 261 1.079819 TTGCGGGAGAAAGCTCGAG 60.080 57.895 8.45 8.45 42.25 4.04
253 262 1.079819 CTTGCGGGAGAAAGCTCGA 60.080 57.895 0.00 0.00 38.98 4.04
300 310 3.787394 TCCTTGACCGGTGAGGAC 58.213 61.111 25.36 7.65 45.00 3.85
313 323 1.317613 TTGATGTTTGCGCTGTCCTT 58.682 45.000 9.73 0.00 0.00 3.36
326 336 2.440409 GAGCCAGGACAACATTGATGT 58.560 47.619 0.00 0.00 44.20 3.06
330 340 0.606401 ACGGAGCCAGGACAACATTG 60.606 55.000 0.00 0.00 0.00 2.82
331 341 0.321653 GACGGAGCCAGGACAACATT 60.322 55.000 0.00 0.00 0.00 2.71
332 342 1.194781 AGACGGAGCCAGGACAACAT 61.195 55.000 0.00 0.00 0.00 2.71
336 346 2.473891 TACGAGACGGAGCCAGGACA 62.474 60.000 0.00 0.00 0.00 4.02
374 384 5.580297 GGTGCAAGTTGATTTTGTTGAAGAA 59.420 36.000 7.16 0.00 0.00 2.52
389 399 2.550830 AATCAGAGTCGGTGCAAGTT 57.449 45.000 0.00 0.00 0.00 2.66
405 415 5.296780 TGACAACTGAAGTCACCTGAAAATC 59.703 40.000 0.00 0.00 40.80 2.17
406 416 5.192927 TGACAACTGAAGTCACCTGAAAAT 58.807 37.500 0.00 0.00 40.80 1.82
413 423 4.096382 ACATGTTTGACAACTGAAGTCACC 59.904 41.667 0.00 2.85 44.95 4.02
439 449 6.025793 AGCTGGGCCCTTTCTAAATAAATA 57.974 37.500 25.70 0.00 0.00 1.40
440 450 4.883759 AGCTGGGCCCTTTCTAAATAAAT 58.116 39.130 25.70 0.00 0.00 1.40
460 473 3.308866 ACGCGATACTCCATGTAAAAAGC 59.691 43.478 15.93 0.00 34.45 3.51
461 474 4.260212 CCACGCGATACTCCATGTAAAAAG 60.260 45.833 15.93 0.00 34.45 2.27
468 481 0.104120 TTCCCACGCGATACTCCATG 59.896 55.000 15.93 0.00 0.00 3.66
470 483 0.387929 GATTCCCACGCGATACTCCA 59.612 55.000 15.93 0.00 0.00 3.86
472 485 0.309922 TCGATTCCCACGCGATACTC 59.690 55.000 15.93 0.32 0.00 2.59
475 488 2.131972 CAAATCGATTCCCACGCGATA 58.868 47.619 15.93 0.00 43.19 2.92
477 490 0.108567 TCAAATCGATTCCCACGCGA 60.109 50.000 15.93 0.00 38.51 5.87
479 492 4.545823 TTATTCAAATCGATTCCCACGC 57.454 40.909 11.83 0.00 0.00 5.34
480 493 5.874831 TGTTTATTCAAATCGATTCCCACG 58.125 37.500 11.83 0.00 0.00 4.94
516 531 3.189495 TGTGCTTTGAGAAACGTGTGAAA 59.811 39.130 0.00 0.00 0.00 2.69
520 535 4.754618 TGATATGTGCTTTGAGAAACGTGT 59.245 37.500 0.00 0.00 0.00 4.49
540 555 8.206189 CCATGCAGAAAAAGGGTATATTTTGAT 58.794 33.333 0.00 0.00 30.52 2.57
551 566 2.364353 TGCCCATGCAGAAAAAGGG 58.636 52.632 0.00 0.00 44.23 3.95
568 583 6.029607 CGGTCTGTGGATGTATTTTGAAATG 58.970 40.000 0.00 0.00 0.00 2.32
580 595 1.000283 GATAGGCTCGGTCTGTGGATG 60.000 57.143 0.00 0.00 0.00 3.51
606 622 8.135382 AGGACAGAGAAGTAGCATAAACTAAA 57.865 34.615 0.00 0.00 0.00 1.85
607 623 7.396339 TGAGGACAGAGAAGTAGCATAAACTAA 59.604 37.037 0.00 0.00 0.00 2.24
611 627 5.480422 TGTGAGGACAGAGAAGTAGCATAAA 59.520 40.000 0.00 0.00 0.00 1.40
615 631 2.876581 TGTGAGGACAGAGAAGTAGCA 58.123 47.619 0.00 0.00 0.00 3.49
616 632 3.944055 TTGTGAGGACAGAGAAGTAGC 57.056 47.619 0.00 0.00 32.26 3.58
617 633 8.687242 TGTTATATTGTGAGGACAGAGAAGTAG 58.313 37.037 0.00 0.00 32.26 2.57
619 635 7.482169 TGTTATATTGTGAGGACAGAGAAGT 57.518 36.000 0.00 0.00 32.26 3.01
624 640 8.862325 AAAACATGTTATATTGTGAGGACAGA 57.138 30.769 12.39 0.00 32.26 3.41
659 675 9.846248 GACATAAGATGATTTTACAAGCTGTTT 57.154 29.630 0.00 0.00 0.00 2.83
662 678 9.447040 CATGACATAAGATGATTTTACAAGCTG 57.553 33.333 0.00 0.00 0.00 4.24
663 679 9.399797 TCATGACATAAGATGATTTTACAAGCT 57.600 29.630 0.00 0.00 0.00 3.74
664 680 9.661187 CTCATGACATAAGATGATTTTACAAGC 57.339 33.333 0.00 0.00 0.00 4.01
675 691 6.014413 ACTCCCTCATCTCATGACATAAGATG 60.014 42.308 19.09 19.09 45.00 2.90
676 692 6.083383 ACTCCCTCATCTCATGACATAAGAT 58.917 40.000 0.00 0.00 35.06 2.40
677 693 5.462240 ACTCCCTCATCTCATGACATAAGA 58.538 41.667 0.00 0.00 35.06 2.10
678 694 5.804944 ACTCCCTCATCTCATGACATAAG 57.195 43.478 0.00 0.00 35.06 1.73
679 695 6.614657 TCTACTCCCTCATCTCATGACATAA 58.385 40.000 0.00 0.00 35.06 1.90
681 697 5.072129 TCTACTCCCTCATCTCATGACAT 57.928 43.478 0.00 0.00 35.06 3.06
683 699 4.220382 CCATCTACTCCCTCATCTCATGAC 59.780 50.000 0.00 0.00 35.06 3.06
685 701 4.021280 CACCATCTACTCCCTCATCTCATG 60.021 50.000 0.00 0.00 0.00 3.07
686 702 4.158786 CACCATCTACTCCCTCATCTCAT 58.841 47.826 0.00 0.00 0.00 2.90
687 703 3.052566 ACACCATCTACTCCCTCATCTCA 60.053 47.826 0.00 0.00 0.00 3.27
688 704 3.571590 ACACCATCTACTCCCTCATCTC 58.428 50.000 0.00 0.00 0.00 2.75
690 706 4.475345 AGTACACCATCTACTCCCTCATC 58.525 47.826 0.00 0.00 0.00 2.92
691 707 4.544564 AGTACACCATCTACTCCCTCAT 57.455 45.455 0.00 0.00 0.00 2.90
692 708 4.332683 AAGTACACCATCTACTCCCTCA 57.667 45.455 0.00 0.00 0.00 3.86
701 717 7.433680 GTTCAAAAATCCAAAGTACACCATCT 58.566 34.615 0.00 0.00 0.00 2.90
708 724 4.612943 TGCCGTTCAAAAATCCAAAGTAC 58.387 39.130 0.00 0.00 0.00 2.73
710 726 3.383185 TCTGCCGTTCAAAAATCCAAAGT 59.617 39.130 0.00 0.00 0.00 2.66
711 727 3.976169 TCTGCCGTTCAAAAATCCAAAG 58.024 40.909 0.00 0.00 0.00 2.77
714 730 1.269448 GCTCTGCCGTTCAAAAATCCA 59.731 47.619 0.00 0.00 0.00 3.41
761 777 3.542712 TCTGCTTTGCTTTCGTGATTC 57.457 42.857 0.00 0.00 0.00 2.52
763 779 3.988379 TTTCTGCTTTGCTTTCGTGAT 57.012 38.095 0.00 0.00 0.00 3.06
765 781 5.340667 GTCTATTTTCTGCTTTGCTTTCGTG 59.659 40.000 0.00 0.00 0.00 4.35
766 782 5.452777 GTCTATTTTCTGCTTTGCTTTCGT 58.547 37.500 0.00 0.00 0.00 3.85
767 783 4.551126 CGTCTATTTTCTGCTTTGCTTTCG 59.449 41.667 0.00 0.00 0.00 3.46
777 794 3.528597 ACCTCTCCGTCTATTTTCTGC 57.471 47.619 0.00 0.00 0.00 4.26
896 914 5.107824 TGAGCGTAGTACTAGTACAGAGTG 58.892 45.833 29.87 17.25 38.48 3.51
905 923 1.527736 CCGAGCTGAGCGTAGTACTAG 59.472 57.143 1.87 0.00 0.00 2.57
906 924 1.137675 TCCGAGCTGAGCGTAGTACTA 59.862 52.381 0.00 0.00 0.00 1.82
907 925 0.107800 TCCGAGCTGAGCGTAGTACT 60.108 55.000 0.00 0.00 0.00 2.73
908 926 0.731417 TTCCGAGCTGAGCGTAGTAC 59.269 55.000 0.00 0.00 0.00 2.73
915 933 0.170561 TCGTAGTTTCCGAGCTGAGC 59.829 55.000 0.00 0.00 0.00 4.26
921 939 0.108945 GGTGGGTCGTAGTTTCCGAG 60.109 60.000 0.00 0.00 34.56 4.63
924 942 1.079612 CGGGTGGGTCGTAGTTTCC 60.080 63.158 0.00 0.00 0.00 3.13
1227 1246 0.759060 GAGAGAGGAGAAGAGGGGGC 60.759 65.000 0.00 0.00 0.00 5.80
1460 1480 4.917998 CACATCGACCAGAAACCGATATAG 59.082 45.833 0.00 0.00 40.54 1.31
1461 1481 4.581409 TCACATCGACCAGAAACCGATATA 59.419 41.667 0.00 0.00 40.54 0.86
1462 1482 3.383505 TCACATCGACCAGAAACCGATAT 59.616 43.478 0.00 0.00 40.54 1.63
1464 1484 1.548719 TCACATCGACCAGAAACCGAT 59.451 47.619 0.00 0.00 42.88 4.18
1471 1491 2.168521 GAGGGAATTCACATCGACCAGA 59.831 50.000 11.02 0.00 0.00 3.86
1614 1640 1.350193 GCCACGTATCAGTGACAGTG 58.650 55.000 14.16 14.16 44.43 3.66
1619 1645 2.183300 GCGGCCACGTATCAGTGA 59.817 61.111 2.24 0.00 44.43 3.41
1620 1646 1.878522 GAGCGGCCACGTATCAGTG 60.879 63.158 2.24 0.00 43.45 3.66
1621 1647 2.052690 AGAGCGGCCACGTATCAGT 61.053 57.895 2.24 0.00 43.45 3.41
1622 1648 1.589993 CAGAGCGGCCACGTATCAG 60.590 63.158 2.24 0.00 43.45 2.90
1623 1649 2.494445 CAGAGCGGCCACGTATCA 59.506 61.111 2.24 0.00 43.45 2.15
1624 1650 2.279517 CCAGAGCGGCCACGTATC 60.280 66.667 2.24 0.00 43.45 2.24
1665 1691 4.298332 GTCAGCACAAAACGAATGGAATT 58.702 39.130 0.00 0.00 40.93 2.17
1713 1739 8.842358 AACTAGACCAAAATCAACGAAGAATA 57.158 30.769 0.00 0.00 0.00 1.75
1714 1740 7.745620 AACTAGACCAAAATCAACGAAGAAT 57.254 32.000 0.00 0.00 0.00 2.40
1715 1741 8.553696 GTTAACTAGACCAAAATCAACGAAGAA 58.446 33.333 0.00 0.00 0.00 2.52
1733 1759 2.541556 GGCTTCAGAGGCGTTAACTAG 58.458 52.381 3.71 0.00 38.80 2.57
1843 1869 2.364002 TCAATCCGTCAGTTCTGACACA 59.636 45.455 25.73 15.21 38.65 3.72
1856 1882 6.373495 GTGGGTAATTTTAGAGTTCAATCCGT 59.627 38.462 0.00 0.00 0.00 4.69
1857 1883 6.183360 GGTGGGTAATTTTAGAGTTCAATCCG 60.183 42.308 0.00 0.00 0.00 4.18
1878 1917 1.006832 GTGACAATTCCGATCGGTGG 58.993 55.000 32.15 21.21 36.47 4.61
1881 1920 2.864343 GGTTAGTGACAATTCCGATCGG 59.136 50.000 28.62 28.62 0.00 4.18
1886 1925 4.783242 CACAAAGGTTAGTGACAATTCCG 58.217 43.478 0.00 0.00 37.97 4.30
1915 1954 0.603065 GCAAAACAGCAGGTAAGGGG 59.397 55.000 0.00 0.00 0.00 4.79
1926 1965 4.930405 TGCCAATGTCATTATGCAAAACAG 59.070 37.500 15.79 0.00 0.00 3.16
2075 2116 5.390145 GCAATGGAAATGAGACAATGTTTGC 60.390 40.000 0.00 0.00 0.00 3.68
2112 2153 9.768662 ATGCTTCTCTGTGAAAATTAAACAAAT 57.231 25.926 0.00 0.00 33.79 2.32
2235 2277 4.682787 CGCTACACCTAATGAGTCAATGA 58.317 43.478 0.00 0.00 0.00 2.57
2267 2311 5.649782 ACCACTAATTCCTGCAAGAAATG 57.350 39.130 1.04 0.00 34.07 2.32
2268 2312 6.494835 AGAAACCACTAATTCCTGCAAGAAAT 59.505 34.615 1.04 0.00 34.07 2.17
2285 2329 5.161358 GCTATAGCCAACAAAAGAAACCAC 58.839 41.667 14.13 0.00 34.31 4.16
2304 2348 2.561478 AACAACGGTTCAGGTGCTAT 57.439 45.000 0.00 0.00 29.00 2.97
2345 2391 7.326547 GTGGTTTTAAGTTTGTTTTCTTCGTCA 59.673 33.333 0.00 0.00 0.00 4.35
2348 2394 7.253190 CGAGTGGTTTTAAGTTTGTTTTCTTCG 60.253 37.037 0.00 0.00 0.00 3.79
2397 2443 6.683974 TTCTATGAACAATTTAGCAGGAGC 57.316 37.500 0.00 0.00 42.56 4.70
2771 2841 7.924412 CGGTACCACATTAATAGTACTTCATGT 59.076 37.037 13.54 2.04 36.25 3.21
2792 2862 3.068560 TGTTGCTGTTGGTAATCGGTAC 58.931 45.455 0.00 0.00 0.00 3.34
2795 2865 1.136085 CGTGTTGCTGTTGGTAATCGG 60.136 52.381 0.00 0.00 0.00 4.18
3346 3445 7.536895 TGCCATTCCATTCAAATAAAAATCG 57.463 32.000 0.00 0.00 0.00 3.34
3380 3479 3.895041 GACTCCAGACCAAAATTTCCCAA 59.105 43.478 0.00 0.00 0.00 4.12
3398 3501 3.759618 AGTAAGCTGGACAGTACAGACTC 59.240 47.826 17.91 0.00 38.20 3.36
3438 3541 4.322567 AGGAAGCAGCTTTGAGTTCTAAG 58.677 43.478 9.62 0.00 33.02 2.18
3448 3551 3.245052 ACACAATAGGAGGAAGCAGCTTT 60.245 43.478 9.62 0.00 0.00 3.51
3591 3694 2.622942 TGACTGAAGTGGAAAATGTGCC 59.377 45.455 0.00 0.00 0.00 5.01
3592 3695 3.988379 TGACTGAAGTGGAAAATGTGC 57.012 42.857 0.00 0.00 0.00 4.57
3618 3721 9.868277 AAAATCAAGATGAGTTTGTTGTACAAA 57.132 25.926 10.51 1.10 42.18 2.83
3699 3805 3.569250 TTTTTAGGGCAATGCTTCGAC 57.431 42.857 4.82 0.00 0.00 4.20
3760 3866 7.939784 AACTTAAAAGCTTCTGTATAAGGGG 57.060 36.000 0.00 0.00 0.00 4.79
3925 4035 2.353357 TTCCTCATAGCCCAGCAATG 57.647 50.000 0.00 0.00 0.00 2.82
3932 4042 2.225467 GCATCTGTTTCCTCATAGCCC 58.775 52.381 0.00 0.00 0.00 5.19
4011 4122 1.612676 ACCAGAAACCCGTTTTAGCC 58.387 50.000 0.00 0.00 32.11 3.93
4065 4176 6.861055 ACATAATCGAACCATGTTGTTCAAAC 59.139 34.615 13.20 0.00 43.84 2.93
4068 4179 6.429692 AGAACATAATCGAACCATGTTGTTCA 59.570 34.615 20.64 3.73 43.84 3.18
4076 4187 7.630242 ACAAATCAGAACATAATCGAACCAT 57.370 32.000 0.00 0.00 0.00 3.55
4106 4220 5.755375 AGTAACATGAGTTTGATATCCAGCG 59.245 40.000 0.00 0.00 39.15 5.18
4178 4293 1.952296 GGCCACATCCTTCAGCAATAG 59.048 52.381 0.00 0.00 0.00 1.73
4179 4294 1.565759 AGGCCACATCCTTCAGCAATA 59.434 47.619 5.01 0.00 30.82 1.90
4250 4477 3.015327 AGTACGTCTAAACTCTGCGGAT 58.985 45.455 0.00 0.00 0.00 4.18
4251 4478 2.430465 AGTACGTCTAAACTCTGCGGA 58.570 47.619 0.00 0.00 0.00 5.54
4324 4551 3.525537 ACGAGACATCACTATTTGGCAG 58.474 45.455 0.00 0.00 0.00 4.85
4339 4566 1.585668 CAGTGAATGCGATGACGAGAC 59.414 52.381 0.00 0.00 42.66 3.36
4392 4904 1.691196 CTGGGTGCAAAGTCTCCAAA 58.309 50.000 0.00 0.00 0.00 3.28
4393 4905 0.178992 CCTGGGTGCAAAGTCTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
4423 4935 6.409704 ACATATGCATCTGTGTTTCTGTACT 58.590 36.000 16.18 0.00 0.00 2.73
4433 4945 9.655769 GAATTTTGTACTACATATGCATCTGTG 57.344 33.333 23.74 16.54 0.00 3.66
4472 4984 2.663602 CGTATTCTAGATGCGCATCACC 59.336 50.000 42.35 23.71 40.22 4.02
4473 4985 3.309388 ACGTATTCTAGATGCGCATCAC 58.691 45.455 42.35 30.93 40.22 3.06
4528 5040 3.572642 AGTATGACCCGGTGATACATCA 58.427 45.455 24.02 3.00 35.62 3.07
4537 5049 1.747355 CAGTCGTAAGTATGACCCGGT 59.253 52.381 0.00 0.00 39.48 5.28
4548 5060 6.807230 AGTACAAACTAATCTGCAGTCGTAAG 59.193 38.462 14.67 8.01 32.84 2.34
4550 5062 6.263516 AGTACAAACTAATCTGCAGTCGTA 57.736 37.500 14.67 3.76 32.84 3.43
4551 5063 5.135508 AGTACAAACTAATCTGCAGTCGT 57.864 39.130 14.67 3.98 32.84 4.34
4552 5064 5.515626 GGTAGTACAAACTAATCTGCAGTCG 59.484 44.000 14.67 3.33 39.90 4.18
4604 5123 6.928492 ACAAGTTTGAATGCCGTTTTTGATAT 59.072 30.769 0.00 0.00 0.00 1.63
4615 5134 3.392882 CCCTGAAACAAGTTTGAATGCC 58.607 45.455 2.45 0.00 32.11 4.40
4640 5159 6.553953 TGGACATGGAAAATAGCTGTAGTA 57.446 37.500 0.00 0.00 0.00 1.82
4719 5238 0.311165 CGCACGATACCCTAGACCAG 59.689 60.000 0.00 0.00 0.00 4.00
4731 5250 0.390340 ACTGCATGAGTTCGCACGAT 60.390 50.000 0.00 0.00 33.75 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.