Multiple sequence alignment - TraesCS3A01G397900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G397900 chr3A 100.000 5175 0 0 1 5175 645128846 645134020 0.000000e+00 9557.0
1 TraesCS3A01G397900 chr3B 92.044 5015 216 76 222 5139 669424406 669429334 0.000000e+00 6881.0
2 TraesCS3A01G397900 chr3D 94.785 3087 129 19 2099 5172 507028107 507031174 0.000000e+00 4780.0
3 TraesCS3A01G397900 chr3D 87.345 1778 83 47 244 1935 507026067 507027788 0.000000e+00 1906.0
4 TraesCS3A01G397900 chr4B 86.028 501 32 20 4595 5078 75832569 75832090 2.150000e-138 503.0
5 TraesCS3A01G397900 chr4B 85.629 501 34 20 4595 5078 6977494 6977973 4.660000e-135 492.0
6 TraesCS3A01G397900 chr4B 100.000 28 0 0 4586 4613 6977413 6977440 9.000000e-03 52.8
7 TraesCS3A01G397900 chr7B 85.009 527 37 23 4573 5078 482346709 482347214 1.000000e-136 497.0
8 TraesCS3A01G397900 chr7B 85.629 167 17 4 4573 4733 121186502 121186337 8.910000e-38 169.0
9 TraesCS3A01G397900 chr5B 84.221 526 41 24 4573 5077 84142921 84143425 1.690000e-129 473.0
10 TraesCS3A01G397900 chr5B 86.920 237 13 9 4845 5078 566111774 566111995 3.090000e-62 250.0
11 TraesCS3A01G397900 chr5B 90.132 152 11 1 4586 4733 566111615 566111766 1.470000e-45 195.0
12 TraesCS3A01G397900 chr2A 87.179 234 12 9 4848 5078 357886232 357886014 3.090000e-62 250.0
13 TraesCS3A01G397900 chr7A 85.714 231 15 9 4851 5078 318138096 318137881 1.450000e-55 228.0
14 TraesCS3A01G397900 chr7A 94.231 52 3 0 4682 4733 296676496 296676547 4.300000e-11 80.5
15 TraesCS3A01G397900 chr5A 92.105 152 8 1 4586 4733 589678111 589678262 1.460000e-50 211.0
16 TraesCS3A01G397900 chr5A 88.043 92 9 2 4573 4663 554971274 554971364 1.970000e-19 108.0
17 TraesCS3A01G397900 chr6B 84.211 133 12 6 4946 5078 634999173 634999296 2.530000e-23 121.0
18 TraesCS3A01G397900 chr4A 94.231 52 3 0 4682 4733 433333220 433333169 4.300000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G397900 chr3A 645128846 645134020 5174 False 9557.0 9557 100.0000 1 5175 1 chr3A.!!$F1 5174
1 TraesCS3A01G397900 chr3B 669424406 669429334 4928 False 6881.0 6881 92.0440 222 5139 1 chr3B.!!$F1 4917
2 TraesCS3A01G397900 chr3D 507026067 507031174 5107 False 3343.0 4780 91.0650 244 5172 2 chr3D.!!$F1 4928
3 TraesCS3A01G397900 chr4B 6977413 6977973 560 False 272.4 492 92.8145 4586 5078 2 chr4B.!!$F1 492
4 TraesCS3A01G397900 chr7B 482346709 482347214 505 False 497.0 497 85.0090 4573 5078 1 chr7B.!!$F1 505
5 TraesCS3A01G397900 chr5B 84142921 84143425 504 False 473.0 473 84.2210 4573 5077 1 chr5B.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.026285 GCAATCGGTCCGATGTTTCG 59.974 55.000 27.03 13.94 46.30 3.46 F
212 213 0.441145 CGGTCCGATGTTTCGTTTCC 59.559 55.000 4.91 0.00 43.97 3.13 F
289 290 0.508641 CAACTCGAACTCCAAGCACG 59.491 55.000 0.00 0.00 0.00 5.34 F
662 745 0.815615 GATGAGCCGATGACCAACCC 60.816 60.000 0.00 0.00 0.00 4.11 F
717 806 1.068816 CGTCAACGGAAAATCCCAACC 60.069 52.381 0.00 0.00 31.13 3.77 F
787 889 1.078356 AGACTCTGCGCGTAGAGGA 60.078 57.895 42.99 19.46 46.69 3.71 F
2585 2878 0.035630 AGCTCATTCCAGTGAGTGCC 60.036 55.000 5.87 0.00 45.80 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 1168 1.068250 GCAGGATCGGGAGCAGTAC 59.932 63.158 0.00 0.0 0.00 2.73 R
1968 2106 1.379044 GGAAGGTGCAGGGGACATG 60.379 63.158 0.00 0.0 0.00 3.21 R
2382 2675 4.147449 GAATTGGCGGCTTGGGGC 62.147 66.667 11.43 0.0 40.90 5.80 R
2457 2750 2.599281 TCCTCGGACTTGTCGCCA 60.599 61.111 0.00 0.0 0.00 5.69 R
2585 2878 5.156608 AGAAAAGATGGAAATTTGGCAGG 57.843 39.130 0.00 0.0 0.00 4.85 R
2617 2910 5.350633 TCAGCAAACCAATGAAGAACAAAG 58.649 37.500 0.00 0.0 0.00 2.77 R
4302 4597 0.166814 CGCTGCTAGTTGGTTGAAGC 59.833 55.000 0.00 0.0 35.51 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.137484 ACGTGAGTGCGCAATATGT 57.863 47.368 14.00 10.34 46.97 2.29
29 30 0.721154 ACGTGAGTGCGCAATATGTG 59.279 50.000 14.00 4.30 46.97 3.21
30 31 0.998669 CGTGAGTGCGCAATATGTGA 59.001 50.000 14.00 0.00 0.00 3.58
31 32 1.005662 CGTGAGTGCGCAATATGTGAG 60.006 52.381 14.00 0.00 0.00 3.51
32 33 2.002586 GTGAGTGCGCAATATGTGAGT 58.997 47.619 14.00 0.00 0.00 3.41
33 34 2.001872 TGAGTGCGCAATATGTGAGTG 58.998 47.619 14.00 0.00 0.00 3.51
34 35 2.270923 GAGTGCGCAATATGTGAGTGA 58.729 47.619 14.00 0.00 0.00 3.41
35 36 2.274437 AGTGCGCAATATGTGAGTGAG 58.726 47.619 14.00 0.00 0.00 3.51
36 37 1.328680 GTGCGCAATATGTGAGTGAGG 59.671 52.381 14.00 0.00 0.00 3.86
37 38 1.066215 TGCGCAATATGTGAGTGAGGT 60.066 47.619 8.16 0.00 0.00 3.85
38 39 1.328680 GCGCAATATGTGAGTGAGGTG 59.671 52.381 0.30 0.00 0.00 4.00
39 40 1.935873 CGCAATATGTGAGTGAGGTGG 59.064 52.381 0.00 0.00 0.00 4.61
40 41 2.292267 GCAATATGTGAGTGAGGTGGG 58.708 52.381 0.00 0.00 0.00 4.61
41 42 2.923121 CAATATGTGAGTGAGGTGGGG 58.077 52.381 0.00 0.00 0.00 4.96
42 43 2.505407 CAATATGTGAGTGAGGTGGGGA 59.495 50.000 0.00 0.00 0.00 4.81
43 44 1.866015 TATGTGAGTGAGGTGGGGAG 58.134 55.000 0.00 0.00 0.00 4.30
44 45 0.911525 ATGTGAGTGAGGTGGGGAGG 60.912 60.000 0.00 0.00 0.00 4.30
45 46 2.122729 TGAGTGAGGTGGGGAGGG 59.877 66.667 0.00 0.00 0.00 4.30
46 47 2.450243 GAGTGAGGTGGGGAGGGA 59.550 66.667 0.00 0.00 0.00 4.20
47 48 1.687493 GAGTGAGGTGGGGAGGGAG 60.687 68.421 0.00 0.00 0.00 4.30
48 49 2.689034 GTGAGGTGGGGAGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
49 50 2.874245 TGAGGTGGGGAGGGAGGA 60.874 66.667 0.00 0.00 0.00 3.71
50 51 2.454941 GAGGTGGGGAGGGAGGAA 59.545 66.667 0.00 0.00 0.00 3.36
51 52 1.996187 GAGGTGGGGAGGGAGGAAC 60.996 68.421 0.00 0.00 0.00 3.62
52 53 3.015753 GGTGGGGAGGGAGGAACC 61.016 72.222 0.00 0.00 38.08 3.62
53 54 2.204090 GTGGGGAGGGAGGAACCA 60.204 66.667 0.00 0.00 41.20 3.67
54 55 2.124996 TGGGGAGGGAGGAACCAG 59.875 66.667 0.00 0.00 41.20 4.00
55 56 2.454941 GGGGAGGGAGGAACCAGA 59.545 66.667 0.00 0.00 41.20 3.86
56 57 1.004891 GGGGAGGGAGGAACCAGAT 59.995 63.158 0.00 0.00 41.20 2.90
57 58 0.267960 GGGGAGGGAGGAACCAGATA 59.732 60.000 0.00 0.00 41.20 1.98
58 59 1.345112 GGGGAGGGAGGAACCAGATAA 60.345 57.143 0.00 0.00 41.20 1.75
59 60 2.488836 GGGAGGGAGGAACCAGATAAA 58.511 52.381 0.00 0.00 41.20 1.40
60 61 2.172930 GGGAGGGAGGAACCAGATAAAC 59.827 54.545 0.00 0.00 41.20 2.01
61 62 2.172930 GGAGGGAGGAACCAGATAAACC 59.827 54.545 0.00 0.00 41.20 3.27
62 63 2.844348 GAGGGAGGAACCAGATAAACCA 59.156 50.000 0.00 0.00 41.20 3.67
63 64 3.459969 GAGGGAGGAACCAGATAAACCAT 59.540 47.826 0.00 0.00 41.20 3.55
64 65 3.203040 AGGGAGGAACCAGATAAACCATG 59.797 47.826 0.00 0.00 41.20 3.66
65 66 3.202151 GGGAGGAACCAGATAAACCATGA 59.798 47.826 0.00 0.00 41.20 3.07
66 67 4.141158 GGGAGGAACCAGATAAACCATGAT 60.141 45.833 0.00 0.00 41.20 2.45
67 68 5.449553 GGAGGAACCAGATAAACCATGATT 58.550 41.667 0.00 0.00 38.79 2.57
68 69 5.893824 GGAGGAACCAGATAAACCATGATTT 59.106 40.000 0.00 0.00 38.79 2.17
69 70 7.060421 GGAGGAACCAGATAAACCATGATTTA 58.940 38.462 0.00 0.00 38.79 1.40
70 71 7.013369 GGAGGAACCAGATAAACCATGATTTAC 59.987 40.741 0.00 0.00 38.79 2.01
71 72 6.542370 AGGAACCAGATAAACCATGATTTACG 59.458 38.462 0.00 0.00 0.00 3.18
72 73 6.238648 GGAACCAGATAAACCATGATTTACGG 60.239 42.308 0.00 0.00 0.00 4.02
73 74 5.996644 ACCAGATAAACCATGATTTACGGA 58.003 37.500 10.23 0.00 0.00 4.69
74 75 6.601332 ACCAGATAAACCATGATTTACGGAT 58.399 36.000 10.23 0.00 0.00 4.18
75 76 7.741785 ACCAGATAAACCATGATTTACGGATA 58.258 34.615 10.23 0.00 0.00 2.59
76 77 7.878127 ACCAGATAAACCATGATTTACGGATAG 59.122 37.037 10.23 0.00 0.00 2.08
77 78 8.094548 CCAGATAAACCATGATTTACGGATAGA 58.905 37.037 0.00 0.00 0.00 1.98
78 79 9.144747 CAGATAAACCATGATTTACGGATAGAG 57.855 37.037 0.00 0.00 0.00 2.43
79 80 9.090103 AGATAAACCATGATTTACGGATAGAGA 57.910 33.333 0.00 0.00 0.00 3.10
80 81 9.141400 GATAAACCATGATTTACGGATAGAGAC 57.859 37.037 0.00 0.00 0.00 3.36
81 82 6.479972 AACCATGATTTACGGATAGAGACA 57.520 37.500 0.00 0.00 0.00 3.41
82 83 5.844004 ACCATGATTTACGGATAGAGACAC 58.156 41.667 0.00 0.00 0.00 3.67
83 84 4.917998 CCATGATTTACGGATAGAGACACG 59.082 45.833 0.00 0.00 0.00 4.49
84 85 4.563337 TGATTTACGGATAGAGACACGG 57.437 45.455 0.00 0.00 0.00 4.94
85 86 3.317149 TGATTTACGGATAGAGACACGGG 59.683 47.826 0.00 0.00 0.00 5.28
86 87 2.715749 TTACGGATAGAGACACGGGA 57.284 50.000 0.00 0.00 0.00 5.14
87 88 2.251409 TACGGATAGAGACACGGGAG 57.749 55.000 0.00 0.00 0.00 4.30
89 90 1.340795 ACGGATAGAGACACGGGAGTT 60.341 52.381 0.00 0.00 44.67 3.01
90 91 2.092753 ACGGATAGAGACACGGGAGTTA 60.093 50.000 0.00 0.00 44.67 2.24
91 92 3.147629 CGGATAGAGACACGGGAGTTAT 58.852 50.000 0.00 0.00 44.67 1.89
92 93 3.058155 CGGATAGAGACACGGGAGTTATG 60.058 52.174 0.00 0.00 44.67 1.90
93 94 3.256136 GGATAGAGACACGGGAGTTATGG 59.744 52.174 0.00 0.00 44.67 2.74
94 95 2.233305 AGAGACACGGGAGTTATGGT 57.767 50.000 0.00 0.00 44.67 3.55
95 96 1.825474 AGAGACACGGGAGTTATGGTG 59.175 52.381 0.00 0.00 44.67 4.17
96 97 0.902531 AGACACGGGAGTTATGGTGG 59.097 55.000 0.00 0.00 44.67 4.61
97 98 0.107848 GACACGGGAGTTATGGTGGG 60.108 60.000 0.00 0.00 44.67 4.61
98 99 1.223487 CACGGGAGTTATGGTGGGG 59.777 63.158 0.00 0.00 44.67 4.96
99 100 1.229723 ACGGGAGTTATGGTGGGGT 60.230 57.895 0.00 0.00 43.33 4.95
100 101 1.223487 CGGGAGTTATGGTGGGGTG 59.777 63.158 0.00 0.00 0.00 4.61
101 102 1.613061 GGGAGTTATGGTGGGGTGG 59.387 63.158 0.00 0.00 0.00 4.61
102 103 1.613061 GGAGTTATGGTGGGGTGGG 59.387 63.158 0.00 0.00 0.00 4.61
103 104 1.212250 GGAGTTATGGTGGGGTGGGT 61.212 60.000 0.00 0.00 0.00 4.51
104 105 0.034477 GAGTTATGGTGGGGTGGGTG 60.034 60.000 0.00 0.00 0.00 4.61
105 106 1.680989 GTTATGGTGGGGTGGGTGC 60.681 63.158 0.00 0.00 0.00 5.01
106 107 3.275214 TTATGGTGGGGTGGGTGCG 62.275 63.158 0.00 0.00 0.00 5.34
112 113 3.956314 GGGGTGGGTGCGTGGTAA 61.956 66.667 0.00 0.00 0.00 2.85
113 114 2.353573 GGGTGGGTGCGTGGTAAT 59.646 61.111 0.00 0.00 0.00 1.89
114 115 1.747745 GGGTGGGTGCGTGGTAATC 60.748 63.158 0.00 0.00 0.00 1.75
115 116 2.104253 GGTGGGTGCGTGGTAATCG 61.104 63.158 0.00 0.00 0.00 3.34
116 117 2.104253 GTGGGTGCGTGGTAATCGG 61.104 63.158 0.00 0.00 0.00 4.18
117 118 2.512974 GGGTGCGTGGTAATCGGG 60.513 66.667 0.00 0.00 0.00 5.14
118 119 2.580276 GGTGCGTGGTAATCGGGA 59.420 61.111 0.00 0.00 0.00 5.14
119 120 1.520787 GGTGCGTGGTAATCGGGAG 60.521 63.158 0.00 0.00 0.00 4.30
120 121 1.520787 GTGCGTGGTAATCGGGAGG 60.521 63.158 0.00 0.00 0.00 4.30
121 122 2.588034 GCGTGGTAATCGGGAGGC 60.588 66.667 0.00 0.00 0.00 4.70
122 123 3.090219 GCGTGGTAATCGGGAGGCT 62.090 63.158 0.00 0.00 0.00 4.58
123 124 1.520666 CGTGGTAATCGGGAGGCTT 59.479 57.895 0.00 0.00 0.00 4.35
124 125 0.810031 CGTGGTAATCGGGAGGCTTG 60.810 60.000 0.00 0.00 0.00 4.01
125 126 0.539986 GTGGTAATCGGGAGGCTTGA 59.460 55.000 0.00 0.00 0.00 3.02
126 127 1.065709 GTGGTAATCGGGAGGCTTGAA 60.066 52.381 0.00 0.00 0.00 2.69
127 128 1.065709 TGGTAATCGGGAGGCTTGAAC 60.066 52.381 0.00 0.00 0.00 3.18
128 129 1.209747 GGTAATCGGGAGGCTTGAACT 59.790 52.381 0.00 0.00 0.00 3.01
129 130 2.280628 GTAATCGGGAGGCTTGAACTG 58.719 52.381 0.00 0.00 0.00 3.16
130 131 0.984230 AATCGGGAGGCTTGAACTGA 59.016 50.000 0.00 0.00 0.00 3.41
131 132 1.207791 ATCGGGAGGCTTGAACTGAT 58.792 50.000 0.00 0.00 0.00 2.90
132 133 1.860641 TCGGGAGGCTTGAACTGATA 58.139 50.000 0.00 0.00 0.00 2.15
133 134 2.398588 TCGGGAGGCTTGAACTGATAT 58.601 47.619 0.00 0.00 0.00 1.63
134 135 2.365617 TCGGGAGGCTTGAACTGATATC 59.634 50.000 0.00 0.00 0.00 1.63
135 136 2.366916 CGGGAGGCTTGAACTGATATCT 59.633 50.000 3.98 0.00 0.00 1.98
136 137 3.553922 CGGGAGGCTTGAACTGATATCTC 60.554 52.174 3.98 0.00 0.00 2.75
137 138 3.244387 GGGAGGCTTGAACTGATATCTCC 60.244 52.174 3.98 0.00 38.91 3.71
138 139 3.389329 GGAGGCTTGAACTGATATCTCCA 59.611 47.826 3.98 0.00 39.30 3.86
139 140 4.502950 GGAGGCTTGAACTGATATCTCCAG 60.503 50.000 3.98 0.00 39.30 3.86
140 141 3.137533 GGCTTGAACTGATATCTCCAGC 58.862 50.000 3.98 6.19 35.14 4.85
141 142 2.799412 GCTTGAACTGATATCTCCAGCG 59.201 50.000 3.98 0.00 35.14 5.18
142 143 3.491619 GCTTGAACTGATATCTCCAGCGA 60.492 47.826 3.98 0.00 35.14 4.93
143 144 4.798924 GCTTGAACTGATATCTCCAGCGAT 60.799 45.833 3.98 0.00 35.14 4.58
144 145 5.565637 GCTTGAACTGATATCTCCAGCGATA 60.566 44.000 3.98 0.00 35.14 2.92
145 146 6.596309 TTGAACTGATATCTCCAGCGATAT 57.404 37.500 3.98 0.00 38.85 1.63
146 147 6.201226 TGAACTGATATCTCCAGCGATATC 57.799 41.667 3.98 9.66 46.41 1.63
147 148 5.948758 TGAACTGATATCTCCAGCGATATCT 59.051 40.000 15.19 0.47 46.38 1.98
148 149 6.094742 TGAACTGATATCTCCAGCGATATCTC 59.905 42.308 15.19 8.06 46.38 2.75
149 150 4.574421 ACTGATATCTCCAGCGATATCTCG 59.426 45.833 15.19 10.38 46.38 4.04
150 151 5.627968 ACTGATATCTCCAGCGATATCTCGA 60.628 44.000 15.19 0.00 46.38 4.04
151 152 7.618239 ACTGATATCTCCAGCGATATCTCGAC 61.618 46.154 15.19 0.00 46.38 4.20
160 161 0.516439 GATATCTCGACCGACCGACC 59.484 60.000 0.00 0.00 34.56 4.79
161 162 1.226686 ATATCTCGACCGACCGACCG 61.227 60.000 0.00 0.00 34.56 4.79
162 163 2.296814 TATCTCGACCGACCGACCGA 62.297 60.000 0.00 0.00 34.56 4.69
163 164 4.157958 CTCGACCGACCGACCGAC 62.158 72.222 0.00 0.00 34.56 4.79
173 174 2.260434 CGACCGACGGATGGTGTT 59.740 61.111 23.38 0.00 40.63 3.32
174 175 2.092291 CGACCGACGGATGGTGTTG 61.092 63.158 23.38 0.00 40.63 3.33
175 176 1.740296 GACCGACGGATGGTGTTGG 60.740 63.158 23.38 0.00 44.99 3.77
176 177 2.162338 GACCGACGGATGGTGTTGGA 62.162 60.000 23.38 0.00 42.57 3.53
177 178 1.004320 CCGACGGATGGTGTTGGAA 60.004 57.895 8.64 0.00 42.57 3.53
178 179 0.392461 CCGACGGATGGTGTTGGAAT 60.392 55.000 8.64 0.00 42.57 3.01
179 180 1.134640 CCGACGGATGGTGTTGGAATA 60.135 52.381 8.64 0.00 42.57 1.75
180 181 2.623535 CGACGGATGGTGTTGGAATAA 58.376 47.619 0.00 0.00 0.00 1.40
181 182 3.004171 CGACGGATGGTGTTGGAATAAA 58.996 45.455 0.00 0.00 0.00 1.40
182 183 3.181514 CGACGGATGGTGTTGGAATAAAC 60.182 47.826 0.00 0.00 0.00 2.01
183 184 2.745281 ACGGATGGTGTTGGAATAAACG 59.255 45.455 0.00 0.00 32.47 3.60
184 185 2.096819 CGGATGGTGTTGGAATAAACGG 59.903 50.000 0.00 0.00 32.47 4.44
185 186 3.086282 GGATGGTGTTGGAATAAACGGT 58.914 45.455 0.00 0.00 32.47 4.83
186 187 3.119637 GGATGGTGTTGGAATAAACGGTG 60.120 47.826 0.00 0.00 32.47 4.94
187 188 2.231529 TGGTGTTGGAATAAACGGTGG 58.768 47.619 0.00 0.00 32.47 4.61
188 189 1.542472 GGTGTTGGAATAAACGGTGGG 59.458 52.381 0.00 0.00 32.47 4.61
189 190 1.068125 GTGTTGGAATAAACGGTGGGC 60.068 52.381 0.00 0.00 32.47 5.36
190 191 1.249407 GTTGGAATAAACGGTGGGCA 58.751 50.000 0.00 0.00 0.00 5.36
191 192 1.614413 GTTGGAATAAACGGTGGGCAA 59.386 47.619 0.00 0.00 0.00 4.52
192 193 2.223803 TGGAATAAACGGTGGGCAAT 57.776 45.000 0.00 0.00 0.00 3.56
193 194 2.096248 TGGAATAAACGGTGGGCAATC 58.904 47.619 0.00 0.00 0.00 2.67
194 195 1.064952 GGAATAAACGGTGGGCAATCG 59.935 52.381 0.00 0.00 0.00 3.34
195 196 1.064952 GAATAAACGGTGGGCAATCGG 59.935 52.381 0.00 0.00 0.00 4.18
196 197 0.034863 ATAAACGGTGGGCAATCGGT 60.035 50.000 0.00 0.00 0.00 4.69
197 198 0.674269 TAAACGGTGGGCAATCGGTC 60.674 55.000 0.00 0.00 0.00 4.79
198 199 3.912745 AACGGTGGGCAATCGGTCC 62.913 63.158 0.00 0.00 43.63 4.46
203 204 2.189521 GGGCAATCGGTCCGATGT 59.810 61.111 27.03 14.18 46.30 3.06
204 205 1.451387 GGGCAATCGGTCCGATGTT 60.451 57.895 27.03 10.95 46.30 2.71
205 206 1.029947 GGGCAATCGGTCCGATGTTT 61.030 55.000 27.03 10.18 46.30 2.83
206 207 0.377203 GGCAATCGGTCCGATGTTTC 59.623 55.000 27.03 15.19 46.30 2.78
207 208 0.026285 GCAATCGGTCCGATGTTTCG 59.974 55.000 27.03 13.94 46.30 3.46
208 209 1.355971 CAATCGGTCCGATGTTTCGT 58.644 50.000 27.03 7.81 46.30 3.85
209 210 1.730064 CAATCGGTCCGATGTTTCGTT 59.270 47.619 27.03 7.87 46.30 3.85
210 211 2.088950 ATCGGTCCGATGTTTCGTTT 57.911 45.000 25.86 0.00 45.24 3.60
211 212 1.421382 TCGGTCCGATGTTTCGTTTC 58.579 50.000 10.71 0.00 43.97 2.78
212 213 0.441145 CGGTCCGATGTTTCGTTTCC 59.559 55.000 4.91 0.00 43.97 3.13
213 214 1.515081 GGTCCGATGTTTCGTTTCCA 58.485 50.000 0.00 0.00 43.97 3.53
214 215 2.081462 GGTCCGATGTTTCGTTTCCAT 58.919 47.619 0.00 0.00 43.97 3.41
215 216 2.095372 GGTCCGATGTTTCGTTTCCATC 59.905 50.000 0.00 0.00 43.97 3.51
216 217 2.739913 GTCCGATGTTTCGTTTCCATCA 59.260 45.455 0.00 0.00 43.97 3.07
217 218 3.000041 TCCGATGTTTCGTTTCCATCAG 59.000 45.455 0.00 0.00 43.97 2.90
218 219 3.000041 CCGATGTTTCGTTTCCATCAGA 59.000 45.455 0.00 0.00 43.97 3.27
219 220 3.181520 CCGATGTTTCGTTTCCATCAGAC 60.182 47.826 0.00 0.00 43.97 3.51
220 221 3.481951 CGATGTTTCGTTTCCATCAGACG 60.482 47.826 0.00 0.00 40.53 4.18
224 225 2.347697 TCGTTTCCATCAGACGTCTG 57.652 50.000 34.76 34.76 45.08 3.51
289 290 0.508641 CAACTCGAACTCCAAGCACG 59.491 55.000 0.00 0.00 0.00 5.34
294 295 1.493311 GAACTCCAAGCACGCTTCG 59.507 57.895 0.16 0.00 33.42 3.79
321 353 6.017523 ACCAACCACAAAAGAAAAACAACAAG 60.018 34.615 0.00 0.00 0.00 3.16
323 355 7.290118 CAACCACAAAAGAAAAACAACAAGAG 58.710 34.615 0.00 0.00 0.00 2.85
351 394 2.590575 CGCGGGTCACTGGTTTGT 60.591 61.111 0.00 0.00 0.00 2.83
358 401 2.955660 GGGTCACTGGTTTGTTGATCAA 59.044 45.455 3.38 3.38 0.00 2.57
373 416 4.462508 TGATCAACAACAACAAAAGGCA 57.537 36.364 0.00 0.00 0.00 4.75
374 417 4.180057 TGATCAACAACAACAAAAGGCAC 58.820 39.130 0.00 0.00 0.00 5.01
375 418 3.667497 TCAACAACAACAAAAGGCACA 57.333 38.095 0.00 0.00 0.00 4.57
376 419 4.199432 TCAACAACAACAAAAGGCACAT 57.801 36.364 0.00 0.00 0.00 3.21
377 420 3.931468 TCAACAACAACAAAAGGCACATG 59.069 39.130 0.00 0.00 0.00 3.21
379 422 4.405116 ACAACAACAAAAGGCACATGAT 57.595 36.364 0.00 0.00 0.00 2.45
380 423 4.121317 ACAACAACAAAAGGCACATGATG 58.879 39.130 0.00 0.00 0.00 3.07
423 466 1.871080 CTCGTGCCTGTTTCTGTTCT 58.129 50.000 0.00 0.00 0.00 3.01
431 474 3.673809 GCCTGTTTCTGTTCTACACTACG 59.326 47.826 0.00 0.00 0.00 3.51
434 477 5.335426 CCTGTTTCTGTTCTACACTACGCTA 60.335 44.000 0.00 0.00 0.00 4.26
442 485 7.066645 TCTGTTCTACACTACGCTACACATTAT 59.933 37.037 0.00 0.00 0.00 1.28
478 528 2.118403 TCCCCTCTCCAACAACTCTT 57.882 50.000 0.00 0.00 0.00 2.85
493 543 4.044317 ACAACTCTTCCTCCAGTAGTAGGA 59.956 45.833 0.00 0.00 40.18 2.94
658 741 2.106938 GCGATGAGCCGATGACCA 59.893 61.111 0.00 0.00 40.81 4.02
659 742 1.521457 GCGATGAGCCGATGACCAA 60.521 57.895 0.00 0.00 40.81 3.67
660 743 1.766143 GCGATGAGCCGATGACCAAC 61.766 60.000 0.00 0.00 40.81 3.77
661 744 1.154205 CGATGAGCCGATGACCAACC 61.154 60.000 0.00 0.00 0.00 3.77
662 745 0.815615 GATGAGCCGATGACCAACCC 60.816 60.000 0.00 0.00 0.00 4.11
663 746 2.124695 GAGCCGATGACCAACCCC 60.125 66.667 0.00 0.00 0.00 4.95
664 747 3.699134 GAGCCGATGACCAACCCCC 62.699 68.421 0.00 0.00 0.00 5.40
690 779 1.687123 GGAATGCTTAGCTCGGTAGGA 59.313 52.381 5.60 0.00 0.00 2.94
716 805 2.325509 CGTCAACGGAAAATCCCAAC 57.674 50.000 0.00 0.00 31.13 3.77
717 806 1.068816 CGTCAACGGAAAATCCCAACC 60.069 52.381 0.00 0.00 31.13 3.77
723 824 1.557099 GGAAAATCCCAACCTCCACC 58.443 55.000 0.00 0.00 0.00 4.61
727 828 2.137177 AATCCCAACCTCCACCGTGG 62.137 60.000 11.73 11.73 39.43 4.94
728 829 3.246112 CCCAACCTCCACCGTGGA 61.246 66.667 19.39 19.39 45.98 4.02
744 845 1.139947 GGAAAGAGGACGAGCGAGG 59.860 63.158 0.00 0.00 0.00 4.63
745 846 1.517475 GAAAGAGGACGAGCGAGGC 60.517 63.158 0.00 0.00 0.00 4.70
746 847 3.343788 AAAGAGGACGAGCGAGGCG 62.344 63.158 0.00 0.00 0.00 5.52
773 875 2.684735 GGGAGACCGGGAGAGACT 59.315 66.667 6.32 0.00 43.64 3.24
774 876 1.454295 GGGAGACCGGGAGAGACTC 60.454 68.421 6.32 4.56 43.64 3.36
775 877 1.610873 GGAGACCGGGAGAGACTCT 59.389 63.158 6.32 4.14 0.00 3.24
777 879 1.379309 AGACCGGGAGAGACTCTGC 60.379 63.158 15.22 15.22 33.75 4.26
778 880 2.752238 ACCGGGAGAGACTCTGCG 60.752 66.667 16.75 12.02 35.51 5.18
779 881 4.200283 CCGGGAGAGACTCTGCGC 62.200 72.222 16.75 0.00 35.51 6.09
780 882 4.544689 CGGGAGAGACTCTGCGCG 62.545 72.222 16.75 18.14 35.51 6.86
781 883 3.444805 GGGAGAGACTCTGCGCGT 61.445 66.667 16.75 0.00 35.51 6.01
782 884 2.113433 GGGAGAGACTCTGCGCGTA 61.113 63.158 16.75 0.71 35.51 4.42
783 885 1.353804 GGAGAGACTCTGCGCGTAG 59.646 63.158 18.85 18.85 0.00 3.51
784 886 1.090625 GGAGAGACTCTGCGCGTAGA 61.091 60.000 25.37 25.37 0.00 2.59
786 888 1.092921 AGAGACTCTGCGCGTAGAGG 61.093 60.000 42.99 30.05 46.69 3.69
787 889 1.078356 AGACTCTGCGCGTAGAGGA 60.078 57.895 42.99 19.46 46.69 3.71
789 891 2.054140 GACTCTGCGCGTAGAGGAGG 62.054 65.000 42.99 27.62 46.79 4.30
790 892 3.477224 CTCTGCGCGTAGAGGAGGC 62.477 68.421 37.17 6.90 46.79 4.70
829 931 3.112263 TCCATCCAAAATACTCCTCCGT 58.888 45.455 0.00 0.00 0.00 4.69
834 936 2.500098 CCAAAATACTCCTCCGTCTCCA 59.500 50.000 0.00 0.00 0.00 3.86
840 942 2.037367 CCTCCGTCTCCACCTCCA 59.963 66.667 0.00 0.00 0.00 3.86
841 943 2.352032 CCTCCGTCTCCACCTCCAC 61.352 68.421 0.00 0.00 0.00 4.02
842 944 2.283676 TCCGTCTCCACCTCCACC 60.284 66.667 0.00 0.00 0.00 4.61
843 945 2.283966 CCGTCTCCACCTCCACCT 60.284 66.667 0.00 0.00 0.00 4.00
844 946 2.352032 CCGTCTCCACCTCCACCTC 61.352 68.421 0.00 0.00 0.00 3.85
845 947 2.352032 CGTCTCCACCTCCACCTCC 61.352 68.421 0.00 0.00 0.00 4.30
846 948 1.229209 GTCTCCACCTCCACCTCCA 60.229 63.158 0.00 0.00 0.00 3.86
875 977 4.645588 ACGTAAAGCTAGCTGTATTCCTCT 59.354 41.667 20.16 0.00 0.00 3.69
887 989 4.671590 TCCTCTCCACCGTCGCCA 62.672 66.667 0.00 0.00 0.00 5.69
888 990 4.436998 CCTCTCCACCGTCGCCAC 62.437 72.222 0.00 0.00 0.00 5.01
889 991 4.436998 CTCTCCACCGTCGCCACC 62.437 72.222 0.00 0.00 0.00 4.61
907 1021 4.250305 ACCACCACGCACACTCCC 62.250 66.667 0.00 0.00 0.00 4.30
928 1042 2.158667 CCTCCCCTCACTCTCTCTCTAC 60.159 59.091 0.00 0.00 0.00 2.59
929 1043 1.847737 TCCCCTCACTCTCTCTCTACC 59.152 57.143 0.00 0.00 0.00 3.18
930 1044 1.850345 CCCCTCACTCTCTCTCTACCT 59.150 57.143 0.00 0.00 0.00 3.08
934 1048 4.451900 CCTCACTCTCTCTCTACCTTCTC 58.548 52.174 0.00 0.00 0.00 2.87
935 1049 4.164221 CCTCACTCTCTCTCTACCTTCTCT 59.836 50.000 0.00 0.00 0.00 3.10
936 1050 5.339200 CCTCACTCTCTCTCTACCTTCTCTT 60.339 48.000 0.00 0.00 0.00 2.85
937 1051 6.134535 TCACTCTCTCTCTACCTTCTCTTT 57.865 41.667 0.00 0.00 0.00 2.52
938 1052 6.177610 TCACTCTCTCTCTACCTTCTCTTTC 58.822 44.000 0.00 0.00 0.00 2.62
955 1072 5.018539 TCTTTCTCTCTCTCTACCTCTCG 57.981 47.826 0.00 0.00 0.00 4.04
963 1080 3.067106 CTCTCTACCTCTCGAGATCTGC 58.933 54.545 17.03 0.00 35.87 4.26
965 1082 1.490910 TCTACCTCTCGAGATCTGCCA 59.509 52.381 17.03 0.00 0.00 4.92
1019 1136 4.547367 GCCATCCTTACGGCGGCT 62.547 66.667 13.24 0.00 42.28 5.52
1022 1139 3.547513 ATCCTTACGGCGGCTCCC 61.548 66.667 13.24 0.00 0.00 4.30
1059 1176 1.226831 GCTGCTCCTCGTACTGCTC 60.227 63.158 0.00 0.00 0.00 4.26
1361 1499 1.966451 GGGGCAACAAGTCGTCCAG 60.966 63.158 0.00 0.00 39.74 3.86
2004 2142 4.779733 TCCCCGCCTCTCCTGTCC 62.780 72.222 0.00 0.00 0.00 4.02
2457 2750 1.750399 GCAGGACAATGCGGACCAT 60.750 57.895 0.00 0.00 36.28 3.55
2520 2813 1.151450 CCTGCACTGGGACAAGGTT 59.849 57.895 0.00 0.00 38.70 3.50
2585 2878 0.035630 AGCTCATTCCAGTGAGTGCC 60.036 55.000 5.87 0.00 45.80 5.01
2617 2910 6.391227 TTTCCATCTTTTCTCAGTCCAAAC 57.609 37.500 0.00 0.00 0.00 2.93
2873 3166 1.371183 CCCTCTGCGAAGGTGAACA 59.629 57.895 3.73 0.00 34.34 3.18
2939 3234 3.053455 GAGCTCTATACCGCATTGTGTC 58.947 50.000 6.43 0.00 0.00 3.67
2958 3253 5.049474 TGTGTCGAGAATTTGAGATGTTTGG 60.049 40.000 0.00 0.00 0.00 3.28
2980 3275 1.208052 TCATCCAGCAGCCTTCACTAC 59.792 52.381 0.00 0.00 0.00 2.73
3035 3330 0.163146 GTAACACGCAGAACTTCGGC 59.837 55.000 3.98 3.98 34.21 5.54
3326 3621 3.181510 CCACCGCTGCTCTGTTTTATTAC 60.182 47.826 0.00 0.00 0.00 1.89
3361 3656 0.463654 TCGTTTGACAGGCTGCTTGT 60.464 50.000 17.77 17.77 0.00 3.16
3364 3659 1.002033 GTTTGACAGGCTGCTTGTGAG 60.002 52.381 22.59 0.00 0.00 3.51
3481 3776 2.223947 TGCGTTCAAGCTTGACACTCTA 60.224 45.455 28.46 10.43 36.83 2.43
3565 3860 0.755686 AGATCATCCGAACAGAGGGC 59.244 55.000 0.00 0.00 0.00 5.19
3607 3902 2.160417 CCAATCAACGCCAAGAACTCTC 59.840 50.000 0.00 0.00 0.00 3.20
3775 4070 4.342665 GGAATAGAGAAGATCACCGAGGTT 59.657 45.833 0.00 0.00 0.00 3.50
3814 4109 4.695231 AACACGAGGGACGACGCG 62.695 66.667 3.53 3.53 45.77 6.01
4117 4412 1.084370 CGCAGTTGTTCCCGAGGATC 61.084 60.000 0.00 0.00 0.00 3.36
4204 4499 7.337942 CCACTAGTCTGCCAATAGAATTTTTCT 59.662 37.037 0.00 0.00 43.72 2.52
4210 4505 8.037166 GTCTGCCAATAGAATTTTTCTTGGATT 58.963 33.333 10.70 0.00 41.14 3.01
4222 4517 3.838244 TCTTGGATTATCAACGGGGAG 57.162 47.619 0.00 0.00 0.00 4.30
4225 4520 2.473070 TGGATTATCAACGGGGAGACA 58.527 47.619 0.00 0.00 0.00 3.41
4226 4521 3.045634 TGGATTATCAACGGGGAGACAT 58.954 45.455 0.00 0.00 0.00 3.06
4227 4522 3.181455 TGGATTATCAACGGGGAGACATG 60.181 47.826 0.00 0.00 0.00 3.21
4229 4524 0.468226 TATCAACGGGGAGACATGCC 59.532 55.000 0.00 0.00 35.83 4.40
4230 4525 1.561769 ATCAACGGGGAGACATGCCA 61.562 55.000 0.00 0.00 39.08 4.92
4231 4526 1.746615 CAACGGGGAGACATGCCAG 60.747 63.158 0.00 0.00 39.08 4.85
4319 4614 2.079925 GGAGCTTCAACCAACTAGCAG 58.920 52.381 0.00 0.00 36.11 4.24
4357 4652 2.669569 ATATGGCCATGGCGTCGC 60.670 61.111 29.90 16.73 43.06 5.19
4407 4702 2.267961 CCCCCTAACACCGTGCTC 59.732 66.667 0.00 0.00 0.00 4.26
4408 4703 2.125673 CCCCTAACACCGTGCTCG 60.126 66.667 0.14 0.14 0.00 5.03
4409 4704 2.642254 CCCCTAACACCGTGCTCGA 61.642 63.158 10.21 0.00 39.71 4.04
4530 4828 9.739786 CAAGTTTTTGCAAATATTTATTCCGAC 57.260 29.630 13.65 0.00 0.00 4.79
4564 4862 4.390264 GACAAAAGGCTTTAGGTCAGACT 58.610 43.478 26.74 4.92 31.34 3.24
4583 4881 7.333174 GTCAGACTTCAGAGGAGGAAAAATAAG 59.667 40.741 0.00 0.00 0.00 1.73
4584 4882 6.093357 CAGACTTCAGAGGAGGAAAAATAAGC 59.907 42.308 0.00 0.00 0.00 3.09
4642 5012 9.513906 TCTCAAATTCTGTACATTAACATGGAA 57.486 29.630 0.00 0.00 34.27 3.53
4643 5013 9.778993 CTCAAATTCTGTACATTAACATGGAAG 57.221 33.333 0.00 0.00 34.27 3.46
4718 5098 6.950545 ACAAATTTCAAATGCATGTTGAGTG 58.049 32.000 17.70 16.30 36.41 3.51
4732 5112 3.066621 TGTTGAGTGGTGAAAATGCTGTC 59.933 43.478 0.00 0.00 0.00 3.51
4747 5127 8.686397 AAAATGCTGTCAAAAATTTCAAAACC 57.314 26.923 0.00 0.00 0.00 3.27
4760 5140 5.596836 TTTCAAAACCTTGCTGAATCTGT 57.403 34.783 0.00 0.00 32.14 3.41
4775 5157 2.445565 TCTGTACAGCTGCTTCTGTG 57.554 50.000 18.45 0.00 45.95 3.66
4811 5201 1.280133 TGGGATGCAGGTGAGAAAGAG 59.720 52.381 0.00 0.00 0.00 2.85
4838 5228 3.872511 ACAAGAGCATGAGAGTGAGAG 57.127 47.619 0.00 0.00 0.00 3.20
4840 5230 3.056678 ACAAGAGCATGAGAGTGAGAGTG 60.057 47.826 0.00 0.00 0.00 3.51
4841 5231 3.084536 AGAGCATGAGAGTGAGAGTGA 57.915 47.619 0.00 0.00 0.00 3.41
4842 5232 3.018856 AGAGCATGAGAGTGAGAGTGAG 58.981 50.000 0.00 0.00 0.00 3.51
4843 5233 3.016031 GAGCATGAGAGTGAGAGTGAGA 58.984 50.000 0.00 0.00 0.00 3.27
4873 5267 1.133513 TGGTGGTGCCAAGAAACAGAT 60.134 47.619 0.00 0.00 45.94 2.90
4890 5284 3.181477 ACAGATAGCAGAGCACTCATCAC 60.181 47.826 0.00 0.00 0.00 3.06
5017 5414 6.825721 CCAGAGACTTTTTACCAGAGCATAAT 59.174 38.462 0.00 0.00 0.00 1.28
5052 5452 8.097038 ACTTTCATCTGCAGTAGAAGAATGTTA 58.903 33.333 14.67 2.08 43.25 2.41
5053 5453 7.834068 TTCATCTGCAGTAGAAGAATGTTAC 57.166 36.000 14.67 0.00 37.99 2.50
5054 5454 7.175347 TCATCTGCAGTAGAAGAATGTTACT 57.825 36.000 14.67 0.00 39.30 2.24
5055 5455 8.293699 TCATCTGCAGTAGAAGAATGTTACTA 57.706 34.615 14.67 0.00 39.30 1.82
5056 5456 8.409371 TCATCTGCAGTAGAAGAATGTTACTAG 58.591 37.037 14.67 0.00 39.30 2.57
5061 5461 8.630917 TGCAGTAGAAGAATGTTACTAGTATCC 58.369 37.037 2.79 0.00 0.00 2.59
5116 5516 4.934001 TGAGAAGAACTTTATCTGCTGCAG 59.066 41.667 23.31 23.31 35.34 4.41
5140 5540 3.589988 AGAACCTGAGCAGTTCATTACG 58.410 45.455 6.44 0.00 34.68 3.18
5172 5576 1.973812 GGGCCAAGAGGTGCAAGAC 60.974 63.158 4.39 0.00 37.19 3.01
5173 5577 1.228245 GGCCAAGAGGTGCAAGACA 60.228 57.895 0.00 0.00 37.19 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.135199 CGCACTCACGTATTGGTAGGT 60.135 52.381 0.00 0.00 0.00 3.08
1 2 1.556564 CGCACTCACGTATTGGTAGG 58.443 55.000 0.00 0.00 0.00 3.18
2 3 0.921347 GCGCACTCACGTATTGGTAG 59.079 55.000 0.30 0.00 34.88 3.18
3 4 0.244178 TGCGCACTCACGTATTGGTA 59.756 50.000 5.66 0.00 34.88 3.25
4 5 0.601576 TTGCGCACTCACGTATTGGT 60.602 50.000 11.12 0.00 34.88 3.67
5 6 0.726827 ATTGCGCACTCACGTATTGG 59.273 50.000 11.12 0.00 34.88 3.16
6 7 3.001228 ACATATTGCGCACTCACGTATTG 59.999 43.478 11.12 3.39 34.88 1.90
7 8 3.001228 CACATATTGCGCACTCACGTATT 59.999 43.478 11.12 0.00 34.88 1.89
8 9 2.539688 CACATATTGCGCACTCACGTAT 59.460 45.455 11.12 0.59 34.88 3.06
9 10 1.923864 CACATATTGCGCACTCACGTA 59.076 47.619 11.12 0.00 34.88 3.57
10 11 0.721154 CACATATTGCGCACTCACGT 59.279 50.000 11.12 0.32 34.88 4.49
11 12 0.998669 TCACATATTGCGCACTCACG 59.001 50.000 11.12 0.00 0.00 4.35
12 13 2.002586 ACTCACATATTGCGCACTCAC 58.997 47.619 11.12 0.00 0.00 3.51
13 14 2.001872 CACTCACATATTGCGCACTCA 58.998 47.619 11.12 0.00 0.00 3.41
14 15 2.270923 TCACTCACATATTGCGCACTC 58.729 47.619 11.12 0.00 0.00 3.51
15 16 2.274437 CTCACTCACATATTGCGCACT 58.726 47.619 11.12 7.82 0.00 4.40
16 17 1.328680 CCTCACTCACATATTGCGCAC 59.671 52.381 11.12 0.00 0.00 5.34
17 18 1.066215 ACCTCACTCACATATTGCGCA 60.066 47.619 5.66 5.66 0.00 6.09
18 19 1.328680 CACCTCACTCACATATTGCGC 59.671 52.381 0.00 0.00 0.00 6.09
19 20 1.935873 CCACCTCACTCACATATTGCG 59.064 52.381 0.00 0.00 0.00 4.85
20 21 2.292267 CCCACCTCACTCACATATTGC 58.708 52.381 0.00 0.00 0.00 3.56
21 22 2.505407 TCCCCACCTCACTCACATATTG 59.495 50.000 0.00 0.00 0.00 1.90
22 23 2.774234 CTCCCCACCTCACTCACATATT 59.226 50.000 0.00 0.00 0.00 1.28
23 24 2.402564 CTCCCCACCTCACTCACATAT 58.597 52.381 0.00 0.00 0.00 1.78
24 25 1.622449 CCTCCCCACCTCACTCACATA 60.622 57.143 0.00 0.00 0.00 2.29
25 26 0.911525 CCTCCCCACCTCACTCACAT 60.912 60.000 0.00 0.00 0.00 3.21
26 27 1.536418 CCTCCCCACCTCACTCACA 60.536 63.158 0.00 0.00 0.00 3.58
27 28 2.294078 CCCTCCCCACCTCACTCAC 61.294 68.421 0.00 0.00 0.00 3.51
28 29 2.122729 CCCTCCCCACCTCACTCA 59.877 66.667 0.00 0.00 0.00 3.41
29 30 1.687493 CTCCCTCCCCACCTCACTC 60.687 68.421 0.00 0.00 0.00 3.51
30 31 2.452114 CTCCCTCCCCACCTCACT 59.548 66.667 0.00 0.00 0.00 3.41
31 32 2.689034 CCTCCCTCCCCACCTCAC 60.689 72.222 0.00 0.00 0.00 3.51
32 33 2.497264 TTCCTCCCTCCCCACCTCA 61.497 63.158 0.00 0.00 0.00 3.86
33 34 1.996187 GTTCCTCCCTCCCCACCTC 60.996 68.421 0.00 0.00 0.00 3.85
34 35 2.125225 GTTCCTCCCTCCCCACCT 59.875 66.667 0.00 0.00 0.00 4.00
35 36 3.015753 GGTTCCTCCCTCCCCACC 61.016 72.222 0.00 0.00 0.00 4.61
36 37 2.204090 TGGTTCCTCCCTCCCCAC 60.204 66.667 0.00 0.00 34.77 4.61
37 38 1.837533 ATCTGGTTCCTCCCTCCCCA 61.838 60.000 0.00 0.00 34.77 4.96
38 39 0.267960 TATCTGGTTCCTCCCTCCCC 59.732 60.000 0.00 0.00 34.77 4.81
39 40 2.172930 GTTTATCTGGTTCCTCCCTCCC 59.827 54.545 0.00 0.00 34.77 4.30
40 41 2.172930 GGTTTATCTGGTTCCTCCCTCC 59.827 54.545 0.00 0.00 34.77 4.30
41 42 2.844348 TGGTTTATCTGGTTCCTCCCTC 59.156 50.000 0.00 0.00 34.77 4.30
42 43 2.929301 TGGTTTATCTGGTTCCTCCCT 58.071 47.619 0.00 0.00 34.77 4.20
43 44 3.202151 TCATGGTTTATCTGGTTCCTCCC 59.798 47.826 0.00 0.00 34.77 4.30
44 45 4.503714 TCATGGTTTATCTGGTTCCTCC 57.496 45.455 0.00 0.00 0.00 4.30
45 46 7.254795 CGTAAATCATGGTTTATCTGGTTCCTC 60.255 40.741 14.08 0.00 0.00 3.71
46 47 6.542370 CGTAAATCATGGTTTATCTGGTTCCT 59.458 38.462 14.08 0.00 0.00 3.36
47 48 6.238648 CCGTAAATCATGGTTTATCTGGTTCC 60.239 42.308 14.08 0.00 0.00 3.62
48 49 6.540914 TCCGTAAATCATGGTTTATCTGGTTC 59.459 38.462 14.08 0.00 34.56 3.62
49 50 6.419791 TCCGTAAATCATGGTTTATCTGGTT 58.580 36.000 14.08 0.00 34.56 3.67
50 51 5.996644 TCCGTAAATCATGGTTTATCTGGT 58.003 37.500 14.08 0.00 34.56 4.00
51 52 8.094548 TCTATCCGTAAATCATGGTTTATCTGG 58.905 37.037 14.08 15.11 34.56 3.86
52 53 9.144747 CTCTATCCGTAAATCATGGTTTATCTG 57.855 37.037 14.08 7.65 34.56 2.90
53 54 9.090103 TCTCTATCCGTAAATCATGGTTTATCT 57.910 33.333 14.08 3.15 34.56 1.98
54 55 9.141400 GTCTCTATCCGTAAATCATGGTTTATC 57.859 37.037 14.08 7.50 34.56 1.75
55 56 8.647796 TGTCTCTATCCGTAAATCATGGTTTAT 58.352 33.333 14.08 2.38 34.56 1.40
56 57 7.924412 GTGTCTCTATCCGTAAATCATGGTTTA 59.076 37.037 7.08 7.08 34.56 2.01
57 58 6.761714 GTGTCTCTATCCGTAAATCATGGTTT 59.238 38.462 9.31 9.31 34.56 3.27
58 59 6.281405 GTGTCTCTATCCGTAAATCATGGTT 58.719 40.000 0.00 0.00 34.56 3.67
59 60 5.507482 CGTGTCTCTATCCGTAAATCATGGT 60.507 44.000 0.00 0.00 34.56 3.55
60 61 4.917998 CGTGTCTCTATCCGTAAATCATGG 59.082 45.833 0.00 0.00 34.18 3.66
61 62 4.917998 CCGTGTCTCTATCCGTAAATCATG 59.082 45.833 0.00 0.00 0.00 3.07
62 63 4.022242 CCCGTGTCTCTATCCGTAAATCAT 60.022 45.833 0.00 0.00 0.00 2.45
63 64 3.317149 CCCGTGTCTCTATCCGTAAATCA 59.683 47.826 0.00 0.00 0.00 2.57
64 65 3.567164 TCCCGTGTCTCTATCCGTAAATC 59.433 47.826 0.00 0.00 0.00 2.17
65 66 3.559069 TCCCGTGTCTCTATCCGTAAAT 58.441 45.455 0.00 0.00 0.00 1.40
66 67 2.947652 CTCCCGTGTCTCTATCCGTAAA 59.052 50.000 0.00 0.00 0.00 2.01
67 68 2.092753 ACTCCCGTGTCTCTATCCGTAA 60.093 50.000 0.00 0.00 0.00 3.18
68 69 1.487976 ACTCCCGTGTCTCTATCCGTA 59.512 52.381 0.00 0.00 0.00 4.02
69 70 0.255318 ACTCCCGTGTCTCTATCCGT 59.745 55.000 0.00 0.00 0.00 4.69
70 71 1.390565 AACTCCCGTGTCTCTATCCG 58.609 55.000 0.00 0.00 0.00 4.18
71 72 3.256136 CCATAACTCCCGTGTCTCTATCC 59.744 52.174 0.00 0.00 0.00 2.59
72 73 3.890147 ACCATAACTCCCGTGTCTCTATC 59.110 47.826 0.00 0.00 0.00 2.08
73 74 3.637229 CACCATAACTCCCGTGTCTCTAT 59.363 47.826 0.00 0.00 0.00 1.98
74 75 3.021695 CACCATAACTCCCGTGTCTCTA 58.978 50.000 0.00 0.00 0.00 2.43
75 76 1.825474 CACCATAACTCCCGTGTCTCT 59.175 52.381 0.00 0.00 0.00 3.10
76 77 1.134788 CCACCATAACTCCCGTGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
77 78 0.902531 CCACCATAACTCCCGTGTCT 59.097 55.000 0.00 0.00 0.00 3.41
78 79 0.107848 CCCACCATAACTCCCGTGTC 60.108 60.000 0.00 0.00 0.00 3.67
79 80 1.559065 CCCCACCATAACTCCCGTGT 61.559 60.000 0.00 0.00 0.00 4.49
80 81 1.223487 CCCCACCATAACTCCCGTG 59.777 63.158 0.00 0.00 0.00 4.94
81 82 1.229723 ACCCCACCATAACTCCCGT 60.230 57.895 0.00 0.00 0.00 5.28
82 83 1.223487 CACCCCACCATAACTCCCG 59.777 63.158 0.00 0.00 0.00 5.14
83 84 1.613061 CCACCCCACCATAACTCCC 59.387 63.158 0.00 0.00 0.00 4.30
84 85 1.212250 ACCCACCCCACCATAACTCC 61.212 60.000 0.00 0.00 0.00 3.85
85 86 0.034477 CACCCACCCCACCATAACTC 60.034 60.000 0.00 0.00 0.00 3.01
86 87 2.083715 CACCCACCCCACCATAACT 58.916 57.895 0.00 0.00 0.00 2.24
87 88 1.680989 GCACCCACCCCACCATAAC 60.681 63.158 0.00 0.00 0.00 1.89
88 89 2.767352 GCACCCACCCCACCATAA 59.233 61.111 0.00 0.00 0.00 1.90
89 90 3.722813 CGCACCCACCCCACCATA 61.723 66.667 0.00 0.00 0.00 2.74
95 96 3.276642 ATTACCACGCACCCACCCC 62.277 63.158 0.00 0.00 0.00 4.95
96 97 1.747745 GATTACCACGCACCCACCC 60.748 63.158 0.00 0.00 0.00 4.61
97 98 2.104253 CGATTACCACGCACCCACC 61.104 63.158 0.00 0.00 0.00 4.61
98 99 2.104253 CCGATTACCACGCACCCAC 61.104 63.158 0.00 0.00 0.00 4.61
99 100 2.266372 CCGATTACCACGCACCCA 59.734 61.111 0.00 0.00 0.00 4.51
100 101 2.512974 CCCGATTACCACGCACCC 60.513 66.667 0.00 0.00 0.00 4.61
101 102 1.520787 CTCCCGATTACCACGCACC 60.521 63.158 0.00 0.00 0.00 5.01
102 103 1.520787 CCTCCCGATTACCACGCAC 60.521 63.158 0.00 0.00 0.00 5.34
103 104 2.897207 CCTCCCGATTACCACGCA 59.103 61.111 0.00 0.00 0.00 5.24
104 105 2.588034 GCCTCCCGATTACCACGC 60.588 66.667 0.00 0.00 0.00 5.34
105 106 0.810031 CAAGCCTCCCGATTACCACG 60.810 60.000 0.00 0.00 0.00 4.94
106 107 0.539986 TCAAGCCTCCCGATTACCAC 59.460 55.000 0.00 0.00 0.00 4.16
107 108 1.065709 GTTCAAGCCTCCCGATTACCA 60.066 52.381 0.00 0.00 0.00 3.25
108 109 1.209747 AGTTCAAGCCTCCCGATTACC 59.790 52.381 0.00 0.00 0.00 2.85
109 110 2.093658 TCAGTTCAAGCCTCCCGATTAC 60.094 50.000 0.00 0.00 0.00 1.89
110 111 2.184533 TCAGTTCAAGCCTCCCGATTA 58.815 47.619 0.00 0.00 0.00 1.75
111 112 0.984230 TCAGTTCAAGCCTCCCGATT 59.016 50.000 0.00 0.00 0.00 3.34
112 113 1.207791 ATCAGTTCAAGCCTCCCGAT 58.792 50.000 0.00 0.00 0.00 4.18
113 114 1.860641 TATCAGTTCAAGCCTCCCGA 58.139 50.000 0.00 0.00 0.00 5.14
114 115 2.366916 AGATATCAGTTCAAGCCTCCCG 59.633 50.000 5.32 0.00 0.00 5.14
115 116 3.244387 GGAGATATCAGTTCAAGCCTCCC 60.244 52.174 5.32 0.00 34.43 4.30
116 117 3.389329 TGGAGATATCAGTTCAAGCCTCC 59.611 47.826 5.32 0.00 39.38 4.30
117 118 4.630111 CTGGAGATATCAGTTCAAGCCTC 58.370 47.826 5.32 0.00 0.00 4.70
118 119 3.181456 GCTGGAGATATCAGTTCAAGCCT 60.181 47.826 5.32 0.00 34.89 4.58
119 120 3.137533 GCTGGAGATATCAGTTCAAGCC 58.862 50.000 5.32 0.00 34.89 4.35
120 121 2.799412 CGCTGGAGATATCAGTTCAAGC 59.201 50.000 5.32 7.54 34.89 4.01
121 122 4.313277 TCGCTGGAGATATCAGTTCAAG 57.687 45.455 5.32 0.00 34.89 3.02
122 123 4.944619 ATCGCTGGAGATATCAGTTCAA 57.055 40.909 5.32 0.00 34.89 2.69
130 131 3.880490 GGTCGAGATATCGCTGGAGATAT 59.120 47.826 4.51 6.56 44.07 1.63
131 132 3.271729 GGTCGAGATATCGCTGGAGATA 58.728 50.000 4.51 0.00 37.49 1.98
132 133 2.088423 GGTCGAGATATCGCTGGAGAT 58.912 52.381 4.51 0.00 34.79 2.75
133 134 1.524848 GGTCGAGATATCGCTGGAGA 58.475 55.000 4.51 0.00 0.00 3.71
134 135 0.167033 CGGTCGAGATATCGCTGGAG 59.833 60.000 4.51 0.00 0.00 3.86
135 136 0.250166 TCGGTCGAGATATCGCTGGA 60.250 55.000 4.51 0.00 0.00 3.86
136 137 0.110147 GTCGGTCGAGATATCGCTGG 60.110 60.000 4.51 0.00 0.00 4.85
137 138 0.110147 GGTCGGTCGAGATATCGCTG 60.110 60.000 4.51 5.82 0.00 5.18
138 139 1.566882 CGGTCGGTCGAGATATCGCT 61.567 60.000 4.51 0.00 0.00 4.93
139 140 1.154450 CGGTCGGTCGAGATATCGC 60.154 63.158 4.51 0.11 0.00 4.58
140 141 0.163360 GTCGGTCGGTCGAGATATCG 59.837 60.000 2.64 2.64 40.01 2.92
141 142 0.516439 GGTCGGTCGGTCGAGATATC 59.484 60.000 0.00 0.00 40.01 1.63
142 143 1.226686 CGGTCGGTCGGTCGAGATAT 61.227 60.000 1.56 0.00 40.01 1.63
143 144 1.884464 CGGTCGGTCGGTCGAGATA 60.884 63.158 1.56 0.00 40.01 1.98
144 145 3.200593 CGGTCGGTCGGTCGAGAT 61.201 66.667 1.56 0.00 40.01 2.75
145 146 4.377708 TCGGTCGGTCGGTCGAGA 62.378 66.667 1.56 0.00 40.01 4.04
146 147 4.157958 GTCGGTCGGTCGGTCGAG 62.158 72.222 8.52 0.00 40.01 4.04
156 157 2.092291 CAACACCATCCGTCGGTCG 61.092 63.158 11.88 3.39 33.25 4.79
157 158 1.740296 CCAACACCATCCGTCGGTC 60.740 63.158 11.88 0.00 33.25 4.79
158 159 1.760479 TTCCAACACCATCCGTCGGT 61.760 55.000 11.88 0.00 37.16 4.69
159 160 0.392461 ATTCCAACACCATCCGTCGG 60.392 55.000 4.39 4.39 0.00 4.79
160 161 2.303163 TATTCCAACACCATCCGTCG 57.697 50.000 0.00 0.00 0.00 5.12
161 162 3.181514 CGTTTATTCCAACACCATCCGTC 60.182 47.826 0.00 0.00 0.00 4.79
162 163 2.745281 CGTTTATTCCAACACCATCCGT 59.255 45.455 0.00 0.00 0.00 4.69
163 164 2.096819 CCGTTTATTCCAACACCATCCG 59.903 50.000 0.00 0.00 0.00 4.18
164 165 3.086282 ACCGTTTATTCCAACACCATCC 58.914 45.455 0.00 0.00 0.00 3.51
165 166 3.119637 CCACCGTTTATTCCAACACCATC 60.120 47.826 0.00 0.00 0.00 3.51
166 167 2.823154 CCACCGTTTATTCCAACACCAT 59.177 45.455 0.00 0.00 0.00 3.55
167 168 2.231529 CCACCGTTTATTCCAACACCA 58.768 47.619 0.00 0.00 0.00 4.17
168 169 1.542472 CCCACCGTTTATTCCAACACC 59.458 52.381 0.00 0.00 0.00 4.16
169 170 1.068125 GCCCACCGTTTATTCCAACAC 60.068 52.381 0.00 0.00 0.00 3.32
170 171 1.249407 GCCCACCGTTTATTCCAACA 58.751 50.000 0.00 0.00 0.00 3.33
171 172 1.249407 TGCCCACCGTTTATTCCAAC 58.751 50.000 0.00 0.00 0.00 3.77
172 173 1.996798 TTGCCCACCGTTTATTCCAA 58.003 45.000 0.00 0.00 0.00 3.53
173 174 2.096248 GATTGCCCACCGTTTATTCCA 58.904 47.619 0.00 0.00 0.00 3.53
174 175 1.064952 CGATTGCCCACCGTTTATTCC 59.935 52.381 0.00 0.00 0.00 3.01
175 176 1.064952 CCGATTGCCCACCGTTTATTC 59.935 52.381 0.00 0.00 0.00 1.75
176 177 1.099689 CCGATTGCCCACCGTTTATT 58.900 50.000 0.00 0.00 0.00 1.40
177 178 0.034863 ACCGATTGCCCACCGTTTAT 60.035 50.000 0.00 0.00 0.00 1.40
178 179 0.674269 GACCGATTGCCCACCGTTTA 60.674 55.000 0.00 0.00 0.00 2.01
179 180 1.969589 GACCGATTGCCCACCGTTT 60.970 57.895 0.00 0.00 0.00 3.60
180 181 2.359478 GACCGATTGCCCACCGTT 60.359 61.111 0.00 0.00 0.00 4.44
181 182 4.404098 GGACCGATTGCCCACCGT 62.404 66.667 0.00 0.00 0.00 4.83
183 184 3.400599 ATCGGACCGATTGCCCACC 62.401 63.158 23.78 0.00 44.59 4.61
184 185 2.180204 CATCGGACCGATTGCCCAC 61.180 63.158 26.70 0.00 44.59 4.61
185 186 2.189257 CATCGGACCGATTGCCCA 59.811 61.111 26.70 0.00 44.59 5.36
186 187 1.029947 AAACATCGGACCGATTGCCC 61.030 55.000 26.70 0.00 44.59 5.36
187 188 0.377203 GAAACATCGGACCGATTGCC 59.623 55.000 26.70 12.23 44.59 4.52
188 189 0.026285 CGAAACATCGGACCGATTGC 59.974 55.000 26.70 12.17 44.59 3.56
189 190 1.355971 ACGAAACATCGGACCGATTG 58.644 50.000 26.70 21.92 44.59 2.67
190 191 2.088950 AACGAAACATCGGACCGATT 57.911 45.000 26.70 13.83 44.59 3.34
192 193 1.421382 GAAACGAAACATCGGACCGA 58.579 50.000 20.85 20.85 41.13 4.69
193 194 0.441145 GGAAACGAAACATCGGACCG 59.559 55.000 7.84 7.84 37.45 4.79
194 195 1.515081 TGGAAACGAAACATCGGACC 58.485 50.000 3.12 3.98 37.45 4.46
195 196 2.739913 TGATGGAAACGAAACATCGGAC 59.260 45.455 3.12 0.00 42.91 4.79
196 197 3.000041 CTGATGGAAACGAAACATCGGA 59.000 45.455 13.63 0.00 46.10 4.55
197 198 3.000041 TCTGATGGAAACGAAACATCGG 59.000 45.455 13.05 13.05 45.11 4.18
198 199 3.481951 CGTCTGATGGAAACGAAACATCG 60.482 47.826 0.00 0.00 42.91 3.84
199 200 3.432252 ACGTCTGATGGAAACGAAACATC 59.568 43.478 1.43 0.00 40.96 3.06
200 201 3.399330 ACGTCTGATGGAAACGAAACAT 58.601 40.909 1.43 0.00 39.59 2.71
201 202 2.798283 GACGTCTGATGGAAACGAAACA 59.202 45.455 8.70 0.00 39.59 2.83
202 203 3.057734 AGACGTCTGATGGAAACGAAAC 58.942 45.455 19.30 0.00 39.59 2.78
203 204 3.057019 CAGACGTCTGATGGAAACGAAA 58.943 45.455 36.73 0.00 46.59 3.46
204 205 2.672714 CAGACGTCTGATGGAAACGAA 58.327 47.619 36.73 0.00 46.59 3.85
205 206 2.347697 CAGACGTCTGATGGAAACGA 57.652 50.000 36.73 0.00 46.59 3.85
220 221 6.340537 TGAGAAAAACACTTACGTTCAGAC 57.659 37.500 0.00 0.00 0.00 3.51
236 237 9.699410 ATTGGATTGTTGGACTATATGAGAAAA 57.301 29.630 0.00 0.00 0.00 2.29
238 239 9.342308 GAATTGGATTGTTGGACTATATGAGAA 57.658 33.333 0.00 0.00 0.00 2.87
239 240 7.939039 GGAATTGGATTGTTGGACTATATGAGA 59.061 37.037 0.00 0.00 0.00 3.27
240 241 7.720957 TGGAATTGGATTGTTGGACTATATGAG 59.279 37.037 0.00 0.00 0.00 2.90
241 242 7.502226 GTGGAATTGGATTGTTGGACTATATGA 59.498 37.037 0.00 0.00 0.00 2.15
289 290 2.098443 TCTTTTGTGGTTGGTTCGAAGC 59.902 45.455 20.13 20.13 0.00 3.86
294 295 6.017852 TGTTGTTTTTCTTTTGTGGTTGGTTC 60.018 34.615 0.00 0.00 0.00 3.62
351 394 4.629200 GTGCCTTTTGTTGTTGTTGATCAA 59.371 37.500 3.38 3.38 0.00 2.57
358 401 3.883830 TCATGTGCCTTTTGTTGTTGT 57.116 38.095 0.00 0.00 0.00 3.32
374 417 9.390795 GCTCAAGTTTTATAAGTATGCATCATG 57.609 33.333 0.19 0.00 0.00 3.07
375 418 8.571336 GGCTCAAGTTTTATAAGTATGCATCAT 58.429 33.333 0.19 0.00 0.00 2.45
376 419 7.013274 GGGCTCAAGTTTTATAAGTATGCATCA 59.987 37.037 0.19 0.00 0.00 3.07
377 420 7.363431 GGGCTCAAGTTTTATAAGTATGCATC 58.637 38.462 0.19 0.00 0.00 3.91
379 422 5.295787 CGGGCTCAAGTTTTATAAGTATGCA 59.704 40.000 0.00 0.00 0.00 3.96
380 423 5.748592 CGGGCTCAAGTTTTATAAGTATGC 58.251 41.667 0.00 0.00 0.00 3.14
381 424 5.527582 AGCGGGCTCAAGTTTTATAAGTATG 59.472 40.000 0.00 0.00 0.00 2.39
382 425 5.681639 AGCGGGCTCAAGTTTTATAAGTAT 58.318 37.500 0.00 0.00 0.00 2.12
383 426 5.093849 AGCGGGCTCAAGTTTTATAAGTA 57.906 39.130 0.00 0.00 0.00 2.24
384 427 3.939592 GAGCGGGCTCAAGTTTTATAAGT 59.060 43.478 15.45 0.00 42.31 2.24
385 428 3.001330 CGAGCGGGCTCAAGTTTTATAAG 59.999 47.826 19.65 0.00 42.86 1.73
386 429 2.933906 CGAGCGGGCTCAAGTTTTATAA 59.066 45.455 19.65 0.00 42.86 0.98
416 459 4.067192 TGTGTAGCGTAGTGTAGAACAGA 58.933 43.478 0.00 0.00 0.00 3.41
423 466 6.318396 TGGTGTATAATGTGTAGCGTAGTGTA 59.682 38.462 0.00 0.00 0.00 2.90
431 474 5.065859 TGCAATGTGGTGTATAATGTGTAGC 59.934 40.000 0.00 0.00 0.00 3.58
434 477 5.009631 AGTGCAATGTGGTGTATAATGTGT 58.990 37.500 0.00 0.00 0.00 3.72
442 485 2.235016 GGGAAAGTGCAATGTGGTGTA 58.765 47.619 0.00 0.00 0.00 2.90
506 579 6.315891 GGCATAACCCTTGTTTATTACGTACA 59.684 38.462 0.00 0.00 35.87 2.90
509 582 5.823209 GGCATAACCCTTGTTTATTACGT 57.177 39.130 0.00 0.00 35.87 3.57
662 745 4.183858 TAAGCATTCCGGGCGGGG 62.184 66.667 11.55 0.00 36.01 5.73
663 746 2.591715 CTAAGCATTCCGGGCGGG 60.592 66.667 0.00 4.42 36.08 6.13
664 747 3.279875 GCTAAGCATTCCGGGCGG 61.280 66.667 0.00 0.00 36.08 6.13
665 748 2.203070 AGCTAAGCATTCCGGGCG 60.203 61.111 0.00 0.00 36.08 6.13
666 749 2.247437 CGAGCTAAGCATTCCGGGC 61.247 63.158 0.00 0.00 0.00 6.13
699 788 2.510613 GAGGTTGGGATTTTCCGTTGA 58.489 47.619 0.00 0.00 37.43 3.18
700 789 1.544246 GGAGGTTGGGATTTTCCGTTG 59.456 52.381 0.00 0.00 37.43 4.10
703 792 1.173913 GTGGAGGTTGGGATTTTCCG 58.826 55.000 0.00 0.00 37.43 4.30
708 797 1.378762 CACGGTGGAGGTTGGGATT 59.621 57.895 0.00 0.00 0.00 3.01
710 799 3.246112 CCACGGTGGAGGTTGGGA 61.246 66.667 22.77 0.00 40.96 4.37
711 800 3.246112 TCCACGGTGGAGGTTGGG 61.246 66.667 25.53 0.00 42.67 4.12
723 824 1.801913 CGCTCGTCCTCTTTCCACG 60.802 63.158 0.00 0.00 34.78 4.94
727 828 1.517475 GCCTCGCTCGTCCTCTTTC 60.517 63.158 0.00 0.00 0.00 2.62
728 829 2.574399 GCCTCGCTCGTCCTCTTT 59.426 61.111 0.00 0.00 0.00 2.52
745 846 3.775654 GTCTCCCCCACTGCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
746 847 3.403558 GGTCTCCCCCACTGCTCC 61.404 72.222 0.00 0.00 0.00 4.70
771 873 2.115911 CCTCCTCTACGCGCAGAGT 61.116 63.158 29.47 7.71 46.42 3.24
772 874 2.718731 CCTCCTCTACGCGCAGAG 59.281 66.667 26.28 26.28 41.54 3.35
773 875 3.518998 GCCTCCTCTACGCGCAGA 61.519 66.667 9.07 9.07 0.00 4.26
774 876 4.914420 CGCCTCCTCTACGCGCAG 62.914 72.222 5.73 1.58 39.39 5.18
778 880 2.548295 CCTCTCGCCTCCTCTACGC 61.548 68.421 0.00 0.00 0.00 4.42
779 881 0.882927 CTCCTCTCGCCTCCTCTACG 60.883 65.000 0.00 0.00 0.00 3.51
780 882 0.470766 TCTCCTCTCGCCTCCTCTAC 59.529 60.000 0.00 0.00 0.00 2.59
781 883 1.214217 TTCTCCTCTCGCCTCCTCTA 58.786 55.000 0.00 0.00 0.00 2.43
782 884 0.333312 TTTCTCCTCTCGCCTCCTCT 59.667 55.000 0.00 0.00 0.00 3.69
783 885 0.744281 CTTTCTCCTCTCGCCTCCTC 59.256 60.000 0.00 0.00 0.00 3.71
784 886 0.333312 TCTTTCTCCTCTCGCCTCCT 59.667 55.000 0.00 0.00 0.00 3.69
785 887 0.744281 CTCTTTCTCCTCTCGCCTCC 59.256 60.000 0.00 0.00 0.00 4.30
786 888 1.676006 CTCTCTTTCTCCTCTCGCCTC 59.324 57.143 0.00 0.00 0.00 4.70
787 889 1.283613 TCTCTCTTTCTCCTCTCGCCT 59.716 52.381 0.00 0.00 0.00 5.52
788 890 1.757682 TCTCTCTTTCTCCTCTCGCC 58.242 55.000 0.00 0.00 0.00 5.54
789 891 2.293399 GGATCTCTCTTTCTCCTCTCGC 59.707 54.545 0.00 0.00 0.00 5.03
790 892 3.550820 TGGATCTCTCTTTCTCCTCTCG 58.449 50.000 0.00 0.00 0.00 4.04
791 893 4.524328 GGATGGATCTCTCTTTCTCCTCTC 59.476 50.000 0.00 0.00 0.00 3.20
829 931 1.229209 GTGGAGGTGGAGGTGGAGA 60.229 63.158 0.00 0.00 0.00 3.71
834 936 2.122954 GGAGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
840 942 0.974383 CTTTACGTGGAGGTGGAGGT 59.026 55.000 0.00 0.00 0.00 3.85
841 943 0.391263 GCTTTACGTGGAGGTGGAGG 60.391 60.000 0.00 0.00 0.00 4.30
842 944 0.608640 AGCTTTACGTGGAGGTGGAG 59.391 55.000 0.00 0.00 0.00 3.86
843 945 1.822990 CTAGCTTTACGTGGAGGTGGA 59.177 52.381 12.98 0.00 0.00 4.02
844 946 1.739371 GCTAGCTTTACGTGGAGGTGG 60.739 57.143 7.70 11.42 0.00 4.61
845 947 1.204941 AGCTAGCTTTACGTGGAGGTG 59.795 52.381 12.68 6.27 0.00 4.00
846 948 1.204941 CAGCTAGCTTTACGTGGAGGT 59.795 52.381 16.46 4.02 0.00 3.85
887 989 3.750373 GAGTGTGCGTGGTGGTGGT 62.750 63.158 0.00 0.00 0.00 4.16
888 990 2.972505 GAGTGTGCGTGGTGGTGG 60.973 66.667 0.00 0.00 0.00 4.61
889 991 2.972505 GGAGTGTGCGTGGTGGTG 60.973 66.667 0.00 0.00 0.00 4.17
890 992 4.250305 GGGAGTGTGCGTGGTGGT 62.250 66.667 0.00 0.00 0.00 4.16
892 994 3.883744 GAGGGGAGTGTGCGTGGTG 62.884 68.421 0.00 0.00 0.00 4.17
907 1021 0.926293 AGAGAGAGAGTGAGGGGAGG 59.074 60.000 0.00 0.00 0.00 4.30
928 1042 5.755849 AGGTAGAGAGAGAGAAAGAGAAGG 58.244 45.833 0.00 0.00 0.00 3.46
929 1043 6.653989 AGAGGTAGAGAGAGAGAAAGAGAAG 58.346 44.000 0.00 0.00 0.00 2.85
930 1044 6.629515 CGAGAGGTAGAGAGAGAGAAAGAGAA 60.630 46.154 0.00 0.00 0.00 2.87
934 1048 5.018539 TCGAGAGGTAGAGAGAGAGAAAG 57.981 47.826 0.00 0.00 0.00 2.62
935 1049 4.712829 TCTCGAGAGGTAGAGAGAGAGAAA 59.287 45.833 12.08 0.00 38.46 2.52
936 1050 4.283337 TCTCGAGAGGTAGAGAGAGAGAA 58.717 47.826 12.08 0.00 38.46 2.87
937 1051 3.905968 TCTCGAGAGGTAGAGAGAGAGA 58.094 50.000 12.08 0.00 38.46 3.10
938 1052 4.524714 AGATCTCGAGAGGTAGAGAGAGAG 59.475 50.000 21.52 0.00 45.36 3.20
955 1072 2.583593 GCGTCCGTGGCAGATCTC 60.584 66.667 0.00 0.00 0.00 2.75
963 1080 2.433491 TGAATTCCGCGTCCGTGG 60.433 61.111 12.90 12.90 46.45 4.94
965 1082 2.781595 AAGCTGAATTCCGCGTCCGT 62.782 55.000 15.07 0.00 0.00 4.69
1040 1157 2.580867 GCAGTACGAGGAGCAGCG 60.581 66.667 0.00 0.00 0.00 5.18
1043 1160 2.052690 GGGAGCAGTACGAGGAGCA 61.053 63.158 0.00 0.00 0.00 4.26
1047 1164 1.655329 GATCGGGAGCAGTACGAGG 59.345 63.158 0.00 0.00 40.21 4.63
1051 1168 1.068250 GCAGGATCGGGAGCAGTAC 59.932 63.158 0.00 0.00 0.00 2.73
1344 1470 1.966451 CCTGGACGACTTGTTGCCC 60.966 63.158 0.00 0.00 0.00 5.36
1968 2106 1.379044 GGAAGGTGCAGGGGACATG 60.379 63.158 0.00 0.00 0.00 3.21
2382 2675 4.147449 GAATTGGCGGCTTGGGGC 62.147 66.667 11.43 0.00 40.90 5.80
2457 2750 2.599281 TCCTCGGACTTGTCGCCA 60.599 61.111 0.00 0.00 0.00 5.69
2585 2878 5.156608 AGAAAAGATGGAAATTTGGCAGG 57.843 39.130 0.00 0.00 0.00 4.85
2617 2910 5.350633 TCAGCAAACCAATGAAGAACAAAG 58.649 37.500 0.00 0.00 0.00 2.77
2929 3224 3.123453 TCTCAAATTCTCGACACAATGCG 59.877 43.478 0.00 0.00 0.00 4.73
2939 3234 6.426980 TGATCCAAACATCTCAAATTCTCG 57.573 37.500 0.00 0.00 0.00 4.04
2958 3253 1.134159 AGTGAAGGCTGCTGGATGATC 60.134 52.381 0.00 0.00 0.00 2.92
2980 3275 5.916883 GCACATAGCAAATTGGTAAGCATAG 59.083 40.000 9.04 0.00 44.79 2.23
3035 3330 2.932614 CAAGGTCTCCAGTAAATCTGCG 59.067 50.000 0.00 0.00 42.38 5.18
3326 3621 7.751732 TGTCAAACGAAGAATGATCATTTAGG 58.248 34.615 21.57 13.46 0.00 2.69
3361 3656 0.392706 TGCTGTTTCGAAGCTCCTCA 59.607 50.000 13.36 3.34 41.42 3.86
3364 3659 0.793250 GTCTGCTGTTTCGAAGCTCC 59.207 55.000 13.36 4.79 41.42 4.70
3448 3743 3.173390 GAACGCATGAGCATCGCCC 62.173 63.158 0.00 0.00 42.27 6.13
3463 3758 4.621991 TGAGTAGAGTGTCAAGCTTGAAC 58.378 43.478 29.99 25.79 39.21 3.18
3481 3776 2.936919 TGACATCAGCCAGTTTGAGT 57.063 45.000 0.00 0.00 0.00 3.41
3565 3860 3.074999 GCTGGCAGAGAGACGGGAG 62.075 68.421 20.86 0.00 29.59 4.30
3673 3968 2.724708 GACGCTGCTGAGCTCGTTG 61.725 63.158 21.43 3.00 43.77 4.10
3775 4070 2.030893 CAGCTCTTCATTCAACCGCAAA 60.031 45.455 0.00 0.00 0.00 3.68
4117 4412 3.114616 CCAGCTCTCAACGCGTGG 61.115 66.667 14.98 11.08 0.00 4.94
4204 4499 2.841266 TGTCTCCCCGTTGATAATCCAA 59.159 45.455 0.00 0.00 0.00 3.53
4210 4505 0.468226 GGCATGTCTCCCCGTTGATA 59.532 55.000 0.00 0.00 0.00 2.15
4216 4511 2.025767 CTCTCTGGCATGTCTCCCCG 62.026 65.000 0.00 0.00 0.00 5.73
4218 4513 1.694133 CCCTCTCTGGCATGTCTCCC 61.694 65.000 0.00 0.00 0.00 4.30
4229 4524 0.970937 TGTAGTTCCCGCCCTCTCTG 60.971 60.000 0.00 0.00 0.00 3.35
4230 4525 0.684805 CTGTAGTTCCCGCCCTCTCT 60.685 60.000 0.00 0.00 0.00 3.10
4231 4526 0.683504 TCTGTAGTTCCCGCCCTCTC 60.684 60.000 0.00 0.00 0.00 3.20
4302 4597 0.166814 CGCTGCTAGTTGGTTGAAGC 59.833 55.000 0.00 0.00 35.51 3.86
4319 4614 0.239347 GCATGTTGGATAGATGCCGC 59.761 55.000 0.00 0.00 45.29 6.53
4357 4652 0.397941 TCCAACTCACCTGAGCTTGG 59.602 55.000 19.99 19.99 45.79 3.61
4394 4689 3.750162 CGTCGAGCACGGTGTTAG 58.250 61.111 10.24 4.31 45.46 2.34
4406 4701 4.081030 GGTGTCGAGCGTCGTCGA 62.081 66.667 6.17 13.40 46.52 4.20
4530 4828 7.410120 AAAGCCTTTTGTCCCTTCTTATATG 57.590 36.000 0.00 0.00 0.00 1.78
4564 4862 5.183904 GCTTGCTTATTTTTCCTCCTCTGAA 59.816 40.000 0.00 0.00 0.00 3.02
4583 4881 5.490139 ACATACATACATGAACTGCTTGC 57.510 39.130 0.00 0.00 0.00 4.01
4584 4882 8.146479 ACATACATACATACATGAACTGCTTG 57.854 34.615 0.00 0.00 0.00 4.01
4642 5012 4.023980 TCGACATCTGATTTACCCACTCT 58.976 43.478 0.00 0.00 0.00 3.24
4643 5013 4.386867 TCGACATCTGATTTACCCACTC 57.613 45.455 0.00 0.00 0.00 3.51
4718 5098 7.014092 TGAAATTTTTGACAGCATTTTCACC 57.986 32.000 0.00 0.00 29.45 4.02
4732 5112 8.400186 AGATTCAGCAAGGTTTTGAAATTTTTG 58.600 29.630 0.00 0.00 36.36 2.44
4760 5140 0.758734 ACCACACAGAAGCAGCTGTA 59.241 50.000 16.64 0.00 46.80 2.74
4768 5148 1.001293 TCAGCAGCTACCACACAGAAG 59.999 52.381 0.00 0.00 0.00 2.85
4769 5149 1.047801 TCAGCAGCTACCACACAGAA 58.952 50.000 0.00 0.00 0.00 3.02
4771 5151 1.151668 GTTCAGCAGCTACCACACAG 58.848 55.000 0.00 0.00 0.00 3.66
4775 5157 0.674895 CCCAGTTCAGCAGCTACCAC 60.675 60.000 0.00 0.00 0.00 4.16
4811 5201 5.008019 TCACTCTCATGCTCTTGTTTTGTTC 59.992 40.000 0.00 0.00 0.00 3.18
4838 5228 0.034059 CACCACCAGACCAGTCTCAC 59.966 60.000 0.00 0.00 37.98 3.51
4840 5230 1.122019 ACCACCACCAGACCAGTCTC 61.122 60.000 0.00 0.00 37.98 3.36
4841 5231 1.074471 ACCACCACCAGACCAGTCT 60.074 57.895 0.00 0.00 41.37 3.24
4842 5232 1.071471 CACCACCACCAGACCAGTC 59.929 63.158 0.00 0.00 0.00 3.51
4843 5233 3.120086 GCACCACCACCAGACCAGT 62.120 63.158 0.00 0.00 0.00 4.00
4873 5267 0.457443 CCGTGATGAGTGCTCTGCTA 59.543 55.000 0.00 0.00 0.00 3.49
4890 5284 2.437200 AATGTGATGCCAAAACACCG 57.563 45.000 0.00 0.00 34.18 4.94
4974 5368 1.134401 TGGCTGCATCTTAGTAGTGGC 60.134 52.381 0.50 0.00 0.00 5.01
5017 5414 5.798132 ACTGCAGATGAAAGTATTGTCAGA 58.202 37.500 23.35 0.00 0.00 3.27
5052 5452 1.123928 GCCCTGCAGTGGATACTAGT 58.876 55.000 21.37 0.00 34.74 2.57
5053 5453 1.123077 TGCCCTGCAGTGGATACTAG 58.877 55.000 21.37 0.16 34.74 2.57
5054 5454 3.315544 TGCCCTGCAGTGGATACTA 57.684 52.632 21.37 3.13 34.74 1.82
5055 5455 4.152248 TGCCCTGCAGTGGATACT 57.848 55.556 21.37 0.00 37.75 2.12
5094 5494 5.174395 TCTGCAGCAGATAAAGTTCTTCTC 58.826 41.667 21.85 0.00 35.39 2.87
5095 5495 5.157940 TCTGCAGCAGATAAAGTTCTTCT 57.842 39.130 21.85 0.00 35.39 2.85
5110 5510 0.520847 GCTCAGGTTCTTTCTGCAGC 59.479 55.000 9.47 0.00 32.69 5.25
5116 5516 5.389935 CGTAATGAACTGCTCAGGTTCTTTC 60.390 44.000 9.73 0.00 42.27 2.62
5140 5540 2.435372 TGGCCCATAATGAACTCACC 57.565 50.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.