Multiple sequence alignment - TraesCS3A01G397000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G397000 chr3A 100.000 3103 0 0 1 3103 644668642 644665540 0.000000e+00 5731.0
1 TraesCS3A01G397000 chr3A 86.105 475 22 26 968 1436 644623563 644623127 3.620000e-129 472.0
2 TraesCS3A01G397000 chr3A 88.169 355 32 6 1092 1440 644610836 644610486 6.190000e-112 414.0
3 TraesCS3A01G397000 chr3A 76.079 857 153 35 1985 2816 644623071 644622242 1.730000e-107 399.0
4 TraesCS3A01G397000 chr3A 84.158 101 11 3 1731 1827 644609268 644609169 3.290000e-15 93.5
5 TraesCS3A01G397000 chr3A 88.889 72 5 1 987 1058 644610911 644610843 5.510000e-13 86.1
6 TraesCS3A01G397000 chr3B 85.175 1430 108 64 152 1543 667710295 667708932 0.000000e+00 1371.0
7 TraesCS3A01G397000 chr3B 85.473 592 51 20 2014 2590 667707740 667707169 4.460000e-163 584.0
8 TraesCS3A01G397000 chr3B 89.091 385 30 8 2606 2979 667707068 667706685 4.690000e-128 468.0
9 TraesCS3A01G397000 chr3B 89.665 358 27 6 1089 1440 667644889 667644536 6.100000e-122 448.0
10 TraesCS3A01G397000 chr3B 84.958 472 25 28 968 1433 667681419 667680988 1.320000e-118 436.0
11 TraesCS3A01G397000 chr3B 75.496 857 155 42 1990 2819 667680887 667680059 4.890000e-98 368.0
12 TraesCS3A01G397000 chr3B 87.697 317 27 5 1679 1988 667708049 667707738 2.940000e-95 359.0
13 TraesCS3A01G397000 chr3B 98.438 64 1 0 995 1058 667644956 667644893 2.530000e-21 113.0
14 TraesCS3A01G397000 chr3B 84.158 101 11 3 1731 1827 667643613 667643514 3.290000e-15 93.5
15 TraesCS3A01G397000 chr3D 89.814 805 43 25 875 1666 505999460 505998682 0.000000e+00 996.0
16 TraesCS3A01G397000 chr3D 88.150 692 61 13 2156 2839 505997754 505997076 0.000000e+00 804.0
17 TraesCS3A01G397000 chr3D 84.318 880 56 46 968 1837 505982526 505981719 0.000000e+00 785.0
18 TraesCS3A01G397000 chr3D 89.207 454 34 11 1821 2273 505974220 505973781 1.260000e-153 553.0
19 TraesCS3A01G397000 chr3D 89.640 444 25 10 1661 2104 505998179 505997757 2.100000e-151 545.0
20 TraesCS3A01G397000 chr3D 86.813 455 24 21 987 1435 505795463 505795039 2.800000e-130 475.0
21 TraesCS3A01G397000 chr3D 84.692 503 36 22 944 1440 505779796 505779329 6.060000e-127 464.0
22 TraesCS3A01G397000 chr3D 76.416 865 139 41 1985 2819 505794982 505794153 1.040000e-109 407.0
23 TraesCS3A01G397000 chr3D 87.455 279 18 10 111 387 506000033 505999770 3.890000e-79 305.0
24 TraesCS3A01G397000 chr3D 84.466 103 11 3 1731 1829 505778144 505778043 2.550000e-16 97.1
25 TraesCS3A01G397000 chr3D 94.000 50 2 1 3 51 495315171 495315220 1.190000e-09 75.0
26 TraesCS3A01G397000 chr6D 87.342 79 4 3 1738 1811 429742764 429742687 5.510000e-13 86.1
27 TraesCS3A01G397000 chr1D 82.353 102 11 5 1731 1827 328845101 328845002 7.130000e-12 82.4
28 TraesCS3A01G397000 chr5D 93.750 48 3 0 1 48 386665279 386665326 4.290000e-09 73.1
29 TraesCS3A01G397000 chr5D 80.851 94 12 4 3010 3103 80435661 80435574 5.550000e-08 69.4
30 TraesCS3A01G397000 chr1A 93.750 48 3 0 1 48 402259131 402259178 4.290000e-09 73.1
31 TraesCS3A01G397000 chr6B 95.349 43 2 0 1 43 604077043 604077085 5.550000e-08 69.4
32 TraesCS3A01G397000 chr2D 93.478 46 3 0 2 47 621261146 621261191 5.550000e-08 69.4
33 TraesCS3A01G397000 chr7A 90.385 52 4 1 1 52 214303214 214303164 2.000000e-07 67.6
34 TraesCS3A01G397000 chr7D 90.196 51 4 1 1 51 60301164 60301213 7.180000e-07 65.8
35 TraesCS3A01G397000 chr4B 86.441 59 8 0 1 59 502730290 502730348 7.180000e-07 65.8
36 TraesCS3A01G397000 chr4B 83.871 62 10 0 2 63 472265973 472265912 3.340000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G397000 chr3A 644665540 644668642 3102 True 5731.000000 5731 100.000000 1 3103 1 chr3A.!!$R1 3102
1 TraesCS3A01G397000 chr3A 644622242 644623563 1321 True 435.500000 472 81.092000 968 2816 2 chr3A.!!$R3 1848
2 TraesCS3A01G397000 chr3B 667706685 667710295 3610 True 695.500000 1371 86.859000 152 2979 4 chr3B.!!$R3 2827
3 TraesCS3A01G397000 chr3B 667680059 667681419 1360 True 402.000000 436 80.227000 968 2819 2 chr3B.!!$R2 1851
4 TraesCS3A01G397000 chr3B 667643514 667644956 1442 True 218.166667 448 90.753667 995 1827 3 chr3B.!!$R1 832
5 TraesCS3A01G397000 chr3D 505981719 505982526 807 True 785.000000 785 84.318000 968 1837 1 chr3D.!!$R2 869
6 TraesCS3A01G397000 chr3D 505997076 506000033 2957 True 662.500000 996 88.764750 111 2839 4 chr3D.!!$R5 2728
7 TraesCS3A01G397000 chr3D 505794153 505795463 1310 True 441.000000 475 81.614500 987 2819 2 chr3D.!!$R4 1832
8 TraesCS3A01G397000 chr3D 505778043 505779796 1753 True 280.550000 464 84.579000 944 1829 2 chr3D.!!$R3 885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 918 0.169672 CCAGCCAATGAGCAAACGAG 59.830 55.0 0.00 0.0 34.23 4.18 F
2002 4286 0.182775 ATGCTGCTCATGGCTGATCA 59.817 50.0 14.28 0.0 41.52 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 4291 0.036732 TCACCTGCCAAAGCCAGTAG 59.963 55.0 0.00 0.00 38.69 2.57 R
3078 5609 0.039256 GCTGGAATCAGTTGCGCAAA 60.039 50.0 26.87 10.39 42.78 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.315525 AGACTTATATTTAGAAACGAAAGGAGC 57.684 33.333 0.00 0.00 0.00 4.70
44 45 9.095065 GACTTATATTTAGAAACGAAAGGAGCA 57.905 33.333 0.00 0.00 0.00 4.26
45 46 9.099454 ACTTATATTTAGAAACGAAAGGAGCAG 57.901 33.333 0.00 0.00 0.00 4.24
46 47 9.099454 CTTATATTTAGAAACGAAAGGAGCAGT 57.901 33.333 0.00 0.00 0.00 4.40
48 49 6.969828 ATTTAGAAACGAAAGGAGCAGTAG 57.030 37.500 0.00 0.00 0.00 2.57
49 50 5.464030 TTAGAAACGAAAGGAGCAGTAGT 57.536 39.130 0.00 0.00 0.00 2.73
50 51 6.579666 TTAGAAACGAAAGGAGCAGTAGTA 57.420 37.500 0.00 0.00 0.00 1.82
51 52 5.464030 AGAAACGAAAGGAGCAGTAGTAA 57.536 39.130 0.00 0.00 0.00 2.24
52 53 5.850614 AGAAACGAAAGGAGCAGTAGTAAA 58.149 37.500 0.00 0.00 0.00 2.01
53 54 6.285990 AGAAACGAAAGGAGCAGTAGTAAAA 58.714 36.000 0.00 0.00 0.00 1.52
54 55 6.764560 AGAAACGAAAGGAGCAGTAGTAAAAA 59.235 34.615 0.00 0.00 0.00 1.94
79 80 5.406767 AAGTAGAGAACTAGCACGATACG 57.593 43.478 0.00 0.00 37.50 3.06
80 81 4.691175 AGTAGAGAACTAGCACGATACGA 58.309 43.478 0.00 0.00 36.36 3.43
81 82 3.948196 AGAGAACTAGCACGATACGAC 57.052 47.619 0.00 0.00 0.00 4.34
82 83 3.268330 AGAGAACTAGCACGATACGACA 58.732 45.455 0.00 0.00 0.00 4.35
83 84 3.063725 AGAGAACTAGCACGATACGACAC 59.936 47.826 0.00 0.00 0.00 3.67
84 85 3.008330 AGAACTAGCACGATACGACACT 58.992 45.455 0.00 0.00 0.00 3.55
85 86 3.063725 AGAACTAGCACGATACGACACTC 59.936 47.826 0.00 0.00 0.00 3.51
86 87 1.669779 ACTAGCACGATACGACACTCC 59.330 52.381 0.00 0.00 0.00 3.85
87 88 0.654160 TAGCACGATACGACACTCCG 59.346 55.000 0.00 0.00 0.00 4.63
88 89 1.022982 AGCACGATACGACACTCCGA 61.023 55.000 0.00 0.00 0.00 4.55
89 90 0.860618 GCACGATACGACACTCCGAC 60.861 60.000 0.00 0.00 0.00 4.79
90 91 0.725686 CACGATACGACACTCCGACT 59.274 55.000 0.00 0.00 0.00 4.18
91 92 1.929169 CACGATACGACACTCCGACTA 59.071 52.381 0.00 0.00 0.00 2.59
92 93 2.033917 CACGATACGACACTCCGACTAG 60.034 54.545 0.00 0.00 0.00 2.57
93 94 2.200067 CGATACGACACTCCGACTAGT 58.800 52.381 0.00 0.00 0.00 2.57
94 95 3.181486 ACGATACGACACTCCGACTAGTA 60.181 47.826 0.00 0.00 0.00 1.82
95 96 3.424861 CGATACGACACTCCGACTAGTAG 59.575 52.174 0.00 0.00 0.00 2.57
96 97 4.615949 GATACGACACTCCGACTAGTAGA 58.384 47.826 3.59 0.00 0.00 2.59
97 98 2.891112 ACGACACTCCGACTAGTAGAG 58.109 52.381 17.06 17.06 0.00 2.43
98 99 2.495270 ACGACACTCCGACTAGTAGAGA 59.505 50.000 22.93 10.40 0.00 3.10
99 100 3.056250 ACGACACTCCGACTAGTAGAGAA 60.056 47.826 22.93 2.10 0.00 2.87
100 101 3.306703 CGACACTCCGACTAGTAGAGAAC 59.693 52.174 22.93 14.17 0.00 3.01
101 102 4.506758 GACACTCCGACTAGTAGAGAACT 58.493 47.826 22.93 9.08 42.62 3.01
102 103 5.659463 GACACTCCGACTAGTAGAGAACTA 58.341 45.833 22.93 0.00 39.80 2.24
124 125 4.413760 AGTAGGAGTGCTAGTGGTGTTTA 58.586 43.478 0.00 0.00 0.00 2.01
141 142 1.825090 TTAGTTACTGAGGCCGTCGA 58.175 50.000 0.00 0.00 0.00 4.20
144 145 1.549170 AGTTACTGAGGCCGTCGAATT 59.451 47.619 0.00 0.00 0.00 2.17
175 176 1.377202 GAGCGGAGGCATGGTCAAA 60.377 57.895 0.00 0.00 43.41 2.69
231 232 3.031495 GATCGATCGAGGGTGCGA 58.969 61.111 23.84 0.00 45.22 5.10
235 236 1.009900 CGATCGAGGGTGCGAGTAC 60.010 63.158 10.26 0.00 44.26 2.73
274 275 0.386838 GCCAGCTGCAGAAACTTGTT 59.613 50.000 20.43 0.00 40.77 2.83
282 287 0.936297 CAGAAACTTGTTGCGCTGGC 60.936 55.000 9.73 0.00 40.52 4.85
283 288 1.103398 AGAAACTTGTTGCGCTGGCT 61.103 50.000 9.73 0.00 40.82 4.75
284 289 0.249031 GAAACTTGTTGCGCTGGCTT 60.249 50.000 9.73 0.00 40.82 4.35
285 290 0.528249 AAACTTGTTGCGCTGGCTTG 60.528 50.000 9.73 0.00 40.82 4.01
288 293 2.467946 CTTGTTGCGCTGGCTTGGAG 62.468 60.000 9.73 0.00 40.82 3.86
289 294 2.980233 GTTGCGCTGGCTTGGAGT 60.980 61.111 9.73 0.00 40.82 3.85
290 295 2.979676 TTGCGCTGGCTTGGAGTG 60.980 61.111 9.73 0.00 40.82 3.51
291 296 3.474486 TTGCGCTGGCTTGGAGTGA 62.474 57.895 9.73 0.00 40.82 3.41
292 297 3.426568 GCGCTGGCTTGGAGTGAC 61.427 66.667 0.00 0.00 35.83 3.67
296 301 0.321919 GCTGGCTTGGAGTGACATGA 60.322 55.000 0.00 0.00 0.00 3.07
297 302 1.681166 GCTGGCTTGGAGTGACATGAT 60.681 52.381 0.00 0.00 0.00 2.45
298 303 2.420547 GCTGGCTTGGAGTGACATGATA 60.421 50.000 0.00 0.00 0.00 2.15
299 304 3.746751 GCTGGCTTGGAGTGACATGATAT 60.747 47.826 0.00 0.00 0.00 1.63
300 305 4.503817 GCTGGCTTGGAGTGACATGATATA 60.504 45.833 0.00 0.00 0.00 0.86
301 306 5.802465 CTGGCTTGGAGTGACATGATATAT 58.198 41.667 0.00 0.00 0.00 0.86
302 307 5.554070 TGGCTTGGAGTGACATGATATATG 58.446 41.667 0.00 0.00 0.00 1.78
303 308 5.072193 TGGCTTGGAGTGACATGATATATGT 59.928 40.000 0.00 0.00 34.52 2.29
308 313 5.764686 TGGAGTGACATGATATATGTTTGCC 59.235 40.000 0.00 0.00 31.52 4.52
347 352 2.260869 CGGCACAGGGGTTCAAGTG 61.261 63.158 0.00 0.00 35.19 3.16
351 356 0.823356 CACAGGGGTTCAAGTGGTGG 60.823 60.000 0.00 0.00 0.00 4.61
387 393 1.342174 GTGGTGGTTACTTGACGGAGA 59.658 52.381 0.00 0.00 0.00 3.71
388 394 2.040939 TGGTGGTTACTTGACGGAGAA 58.959 47.619 0.00 0.00 0.00 2.87
389 395 2.224113 TGGTGGTTACTTGACGGAGAAC 60.224 50.000 0.00 0.00 0.00 3.01
488 513 0.953960 ACGCAATTTCCGGTCCTGAC 60.954 55.000 0.00 0.00 0.00 3.51
503 529 1.386533 CTGACCCATCCAACATCTGC 58.613 55.000 0.00 0.00 0.00 4.26
521 547 2.125326 CGCCTGATCCTGTCCCGTA 61.125 63.158 0.00 0.00 0.00 4.02
522 548 1.442148 GCCTGATCCTGTCCCGTAC 59.558 63.158 0.00 0.00 0.00 3.67
530 556 3.694746 TGTCCCGTACAGCTGGAG 58.305 61.111 19.93 8.49 30.88 3.86
558 584 4.697756 CGACACCGCCACCACCAT 62.698 66.667 0.00 0.00 0.00 3.55
561 587 3.055719 CACCGCCACCACCATCAC 61.056 66.667 0.00 0.00 0.00 3.06
565 591 3.064324 GCCACCACCATCACCAGC 61.064 66.667 0.00 0.00 0.00 4.85
618 644 1.365633 GAAATGTTGGCCGCCACAA 59.634 52.632 13.00 3.27 30.78 3.33
619 645 0.943835 GAAATGTTGGCCGCCACAAC 60.944 55.000 13.00 9.61 46.30 3.32
630 656 0.989890 CGCCACAACGAAGTAGTAGC 59.010 55.000 0.00 0.00 45.00 3.58
682 720 1.384525 TTTATTAAGCACGCGCCCAT 58.615 45.000 5.73 0.00 39.83 4.00
686 724 0.808453 TTAAGCACGCGCCCATCTAC 60.808 55.000 5.73 0.00 39.83 2.59
710 748 2.026590 GCGCATGGCATGGCTAAC 59.973 61.111 27.48 10.43 42.87 2.34
712 750 2.035421 CGCATGGCATGGCTAACAT 58.965 52.632 27.48 2.13 41.57 2.71
718 756 4.701651 GCATGGCATGGCTAACATAGAATA 59.298 41.667 27.48 0.00 37.84 1.75
723 761 6.262944 TGGCATGGCTAACATAGAATAAGTTG 59.737 38.462 21.08 0.00 37.84 3.16
724 762 6.263168 GGCATGGCTAACATAGAATAAGTTGT 59.737 38.462 12.86 0.00 37.84 3.32
728 766 9.686683 ATGGCTAACATAGAATAAGTTGTTTCT 57.313 29.630 7.71 7.71 38.26 2.52
739 777 8.871125 AGAATAAGTTGTTTCTCTTCCTACAGA 58.129 33.333 0.00 0.00 0.00 3.41
747 785 4.156664 TCTCTTCCTACAGAAACGAACG 57.843 45.455 0.00 0.00 32.88 3.95
764 802 3.718864 CGAACGTCACACTCAAAATGTTG 59.281 43.478 0.00 0.00 35.95 3.33
765 803 4.658071 GAACGTCACACTCAAAATGTTGT 58.342 39.130 0.00 0.00 36.07 3.32
766 804 4.695217 ACGTCACACTCAAAATGTTGTT 57.305 36.364 0.00 0.00 36.07 2.83
776 814 5.351189 ACTCAAAATGTTGTTTTCTTGGCAC 59.649 36.000 0.00 0.00 36.07 5.01
810 848 1.972588 AAGGTAGGCTTCCCATGAGT 58.027 50.000 6.54 0.00 0.00 3.41
817 855 4.591321 AGGCTTCCCATGAGTTAATCAA 57.409 40.909 0.00 0.00 42.53 2.57
818 856 5.134725 AGGCTTCCCATGAGTTAATCAAT 57.865 39.130 0.00 0.00 42.53 2.57
819 857 5.136105 AGGCTTCCCATGAGTTAATCAATC 58.864 41.667 0.00 0.00 42.53 2.67
822 860 5.221126 GCTTCCCATGAGTTAATCAATCACC 60.221 44.000 0.00 0.00 42.53 4.02
823 861 5.715439 TCCCATGAGTTAATCAATCACCT 57.285 39.130 0.00 0.00 42.53 4.00
829 874 9.347240 CCATGAGTTAATCAATCACCTAAGAAT 57.653 33.333 0.00 0.00 42.53 2.40
858 903 2.185004 TCTTTTCCTGTACAGCCAGC 57.815 50.000 17.86 0.00 0.00 4.85
867 912 0.677731 GTACAGCCAGCCAATGAGCA 60.678 55.000 0.00 0.00 34.23 4.26
872 917 1.865788 GCCAGCCAATGAGCAAACGA 61.866 55.000 0.00 0.00 34.23 3.85
873 918 0.169672 CCAGCCAATGAGCAAACGAG 59.830 55.000 0.00 0.00 34.23 4.18
933 978 2.737252 CAACTCTAGAAACCGACCAAGC 59.263 50.000 0.00 0.00 0.00 4.01
938 983 0.886490 AGAAACCGACCAAGCAGCAG 60.886 55.000 0.00 0.00 0.00 4.24
962 1007 1.023513 AGCAGCAGCAGACGAATTCC 61.024 55.000 3.17 0.00 45.49 3.01
965 1010 0.610174 AGCAGCAGACGAATTCCAGA 59.390 50.000 0.00 0.00 0.00 3.86
1430 1487 1.221021 CCGGCCCTGGTAAGACTTC 59.779 63.158 0.00 0.00 0.00 3.01
1436 1493 3.082548 GCCCTGGTAAGACTTCTTTTCC 58.917 50.000 0.00 2.06 37.40 3.13
1484 1547 3.120130 TCGTTACAATTGTTTCGGGATGC 60.120 43.478 17.78 0.00 0.00 3.91
1510 1578 0.813821 GATGGCAAGGTTTCTCTGCC 59.186 55.000 5.36 5.36 45.19 4.85
1527 1595 3.906660 CCGTTGTGGCAGAACTCTA 57.093 52.632 22.93 0.00 0.00 2.43
1544 1612 4.978099 ACTCTATGTTTATGCCTCCATGG 58.022 43.478 4.97 4.97 39.35 3.66
1558 1801 4.161377 GCCTCCATGGTTTGCCTTTTATTA 59.839 41.667 12.58 0.00 38.35 0.98
1562 1805 7.926018 CCTCCATGGTTTGCCTTTTATTATAAC 59.074 37.037 12.58 0.00 35.27 1.89
1570 1813 9.997482 GTTTGCCTTTTATTATAACGATCAGAA 57.003 29.630 0.00 0.00 0.00 3.02
1728 3616 8.138074 ACAAAAGAGAAAAGGAACTCAATAAGC 58.862 33.333 0.00 0.00 38.49 3.09
1735 3992 8.157476 AGAAAAGGAACTCAATAAGCTGAACTA 58.843 33.333 0.00 0.00 38.49 2.24
1736 3993 7.674471 AAAGGAACTCAATAAGCTGAACTAC 57.326 36.000 0.00 0.00 38.49 2.73
1811 4071 1.964223 TGTCTCCTCTCTCCAACACAC 59.036 52.381 0.00 0.00 0.00 3.82
1924 4190 1.739562 CGAAGCACCTGGAGCTGTC 60.740 63.158 19.41 15.98 42.53 3.51
1945 4211 9.525409 GCTGTCTTTGATTTGCTATTCATTTAT 57.475 29.630 0.00 0.00 0.00 1.40
1972 4256 9.727627 GATGATGTCCTATTTTTCTTTGTGATC 57.272 33.333 0.00 0.00 0.00 2.92
1986 4270 2.962125 TGTGATCAACAAATGGCATGC 58.038 42.857 9.90 9.90 35.24 4.06
1987 4271 2.563620 TGTGATCAACAAATGGCATGCT 59.436 40.909 18.92 0.00 35.24 3.79
1988 4272 2.927477 GTGATCAACAAATGGCATGCTG 59.073 45.455 18.92 10.48 0.00 4.41
1989 4273 1.931172 GATCAACAAATGGCATGCTGC 59.069 47.619 18.92 1.78 44.08 5.25
1990 4274 0.970640 TCAACAAATGGCATGCTGCT 59.029 45.000 18.92 0.00 44.28 4.24
1991 4275 1.067425 TCAACAAATGGCATGCTGCTC 60.067 47.619 18.92 0.53 44.28 4.26
1992 4276 0.970640 AACAAATGGCATGCTGCTCA 59.029 45.000 18.92 7.28 44.28 4.26
1993 4277 1.191535 ACAAATGGCATGCTGCTCAT 58.808 45.000 18.92 9.52 44.28 2.90
1999 4283 4.235731 CATGCTGCTCATGGCTGA 57.764 55.556 14.28 3.77 46.81 4.26
2000 4284 2.720659 CATGCTGCTCATGGCTGAT 58.279 52.632 14.28 5.36 46.81 2.90
2001 4285 0.593618 CATGCTGCTCATGGCTGATC 59.406 55.000 14.28 0.00 46.81 2.92
2002 4286 0.182775 ATGCTGCTCATGGCTGATCA 59.817 50.000 14.28 0.00 41.52 2.92
2003 4287 0.463833 TGCTGCTCATGGCTGATCAG 60.464 55.000 18.84 18.84 44.70 2.90
2004 4288 0.464013 GCTGCTCATGGCTGATCAGT 60.464 55.000 23.38 1.24 44.08 3.41
2005 4289 2.017623 GCTGCTCATGGCTGATCAGTT 61.018 52.381 23.38 6.84 44.08 3.16
2006 4290 2.744166 GCTGCTCATGGCTGATCAGTTA 60.744 50.000 23.38 13.22 44.08 2.24
2007 4291 2.871022 CTGCTCATGGCTGATCAGTTAC 59.129 50.000 23.38 14.42 39.63 2.50
2008 4292 2.502947 TGCTCATGGCTGATCAGTTACT 59.497 45.455 23.38 4.21 42.39 2.24
2009 4293 3.706086 TGCTCATGGCTGATCAGTTACTA 59.294 43.478 23.38 5.99 42.39 1.82
2010 4294 4.054671 GCTCATGGCTGATCAGTTACTAC 58.945 47.826 23.38 5.94 38.06 2.73
2011 4295 4.202202 GCTCATGGCTGATCAGTTACTACT 60.202 45.833 23.38 0.12 38.06 2.57
2012 4296 6.247625 GCTCATGGCTGATCAGTTACTACTG 61.248 48.000 23.38 11.51 44.20 2.74
2104 4424 3.895656 ACAGTCAAACTCTGCACCTAGTA 59.104 43.478 0.00 0.00 36.50 1.82
2106 4426 3.511934 AGTCAAACTCTGCACCTAGTAGG 59.488 47.826 15.09 15.09 42.49 3.18
2128 4448 0.105607 GGGAACTCGGGACTAGGGAT 60.106 60.000 0.00 0.00 0.00 3.85
2129 4449 1.041437 GGAACTCGGGACTAGGGATG 58.959 60.000 0.00 0.00 0.00 3.51
2130 4450 1.041437 GAACTCGGGACTAGGGATGG 58.959 60.000 0.00 0.00 0.00 3.51
2131 4451 0.398664 AACTCGGGACTAGGGATGGG 60.399 60.000 0.00 0.00 0.00 4.00
2132 4452 2.122989 TCGGGACTAGGGATGGGC 60.123 66.667 0.00 0.00 0.00 5.36
2133 4453 2.122813 CGGGACTAGGGATGGGCT 60.123 66.667 0.00 0.00 0.00 5.19
2135 4455 1.384643 GGGACTAGGGATGGGCTGT 60.385 63.158 0.00 0.00 0.00 4.40
2137 4457 1.147153 GACTAGGGATGGGCTGTGC 59.853 63.158 0.00 0.00 0.00 4.57
2139 4459 0.031111 ACTAGGGATGGGCTGTGCTA 60.031 55.000 0.00 0.00 0.00 3.49
2141 4461 1.071385 CTAGGGATGGGCTGTGCTAAG 59.929 57.143 0.00 0.00 0.00 2.18
2142 4462 0.621571 AGGGATGGGCTGTGCTAAGA 60.622 55.000 0.00 0.00 0.00 2.10
2143 4463 0.475906 GGGATGGGCTGTGCTAAGAT 59.524 55.000 0.00 0.00 0.00 2.40
2144 4464 1.602311 GGATGGGCTGTGCTAAGATG 58.398 55.000 0.00 0.00 0.00 2.90
2145 4465 0.950116 GATGGGCTGTGCTAAGATGC 59.050 55.000 0.00 0.00 0.00 3.91
2146 4466 0.549950 ATGGGCTGTGCTAAGATGCT 59.450 50.000 0.00 0.00 0.00 3.79
2147 4467 0.329261 TGGGCTGTGCTAAGATGCTT 59.671 50.000 0.00 0.00 0.00 3.91
2148 4468 1.020437 GGGCTGTGCTAAGATGCTTC 58.980 55.000 0.00 0.00 0.00 3.86
2149 4469 0.654683 GGCTGTGCTAAGATGCTTCG 59.345 55.000 0.00 0.00 0.00 3.79
2150 4470 0.654683 GCTGTGCTAAGATGCTTCGG 59.345 55.000 0.00 0.00 0.00 4.30
2151 4471 2.009042 GCTGTGCTAAGATGCTTCGGT 61.009 52.381 0.00 0.00 0.00 4.69
2179 4503 1.009829 GTGCTAAGATGGGCTGAACG 58.990 55.000 0.00 0.00 0.00 3.95
2254 4591 0.391661 GAGGAGATGCTTCGGTTGCA 60.392 55.000 0.00 0.00 44.95 4.08
2333 4670 2.299013 ACTTATGACACCGCAGAACAGA 59.701 45.455 0.00 0.00 0.00 3.41
2356 4693 4.551388 GAGAAATCTCGAGCCGATATGTT 58.449 43.478 7.81 0.00 34.61 2.71
2399 4758 5.391449 CATCAGAAGCTTGTCATTTGTCAG 58.609 41.667 2.10 0.00 0.00 3.51
2407 4766 4.202050 GCTTGTCATTTGTCAGAGGTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
2427 4790 7.115378 GGTGTTTTAAACATGCAATTCAGAGAG 59.885 37.037 13.84 0.00 44.35 3.20
2443 4806 4.952957 TCAGAGAGCTGCTAGTGTTTCTAT 59.047 41.667 0.15 0.00 42.01 1.98
2447 4810 5.659463 AGAGCTGCTAGTGTTTCTATTCTG 58.341 41.667 0.15 0.00 0.00 3.02
2449 4812 3.935203 GCTGCTAGTGTTTCTATTCTGCA 59.065 43.478 0.00 0.00 32.30 4.41
2453 4816 6.172630 TGCTAGTGTTTCTATTCTGCATTGA 58.827 36.000 0.00 0.00 0.00 2.57
2488 4853 2.170607 AGCTCCAACTGTGTTGTACTGT 59.829 45.455 9.20 0.00 42.45 3.55
2522 4888 7.555914 TGAGCTTGCAAATATGTTGGTAGATTA 59.444 33.333 0.00 0.00 0.00 1.75
2523 4889 8.469309 AGCTTGCAAATATGTTGGTAGATTAT 57.531 30.769 0.00 0.00 0.00 1.28
2524 4890 8.917088 AGCTTGCAAATATGTTGGTAGATTATT 58.083 29.630 0.00 0.00 0.00 1.40
2525 4891 8.971321 GCTTGCAAATATGTTGGTAGATTATTG 58.029 33.333 0.00 0.00 0.00 1.90
2526 4892 9.467258 CTTGCAAATATGTTGGTAGATTATTGG 57.533 33.333 0.00 0.00 0.00 3.16
2527 4893 7.432869 TGCAAATATGTTGGTAGATTATTGGC 58.567 34.615 0.00 0.00 0.00 4.52
2528 4894 7.287466 TGCAAATATGTTGGTAGATTATTGGCT 59.713 33.333 0.00 0.00 0.00 4.75
2529 4895 7.809806 GCAAATATGTTGGTAGATTATTGGCTC 59.190 37.037 0.00 0.00 0.00 4.70
2532 4898 9.950496 AATATGTTGGTAGATTATTGGCTCTAG 57.050 33.333 0.00 0.00 0.00 2.43
2533 4899 5.611374 TGTTGGTAGATTATTGGCTCTAGC 58.389 41.667 3.70 3.70 40.95 3.42
2534 4900 5.130311 TGTTGGTAGATTATTGGCTCTAGCA 59.870 40.000 8.10 8.10 45.65 3.49
2536 4902 6.247229 TGGTAGATTATTGGCTCTAGCAAA 57.753 37.500 9.36 0.00 44.85 3.68
2537 4903 6.841601 TGGTAGATTATTGGCTCTAGCAAAT 58.158 36.000 9.46 9.46 44.85 2.32
2538 4904 7.973402 TGGTAGATTATTGGCTCTAGCAAATA 58.027 34.615 7.56 7.56 44.85 1.40
2545 4911 6.690194 ATTGGCTCTAGCAAATAAGTTGAG 57.310 37.500 2.64 0.00 42.54 3.02
2546 4912 3.941483 TGGCTCTAGCAAATAAGTTGAGC 59.059 43.478 4.07 0.00 44.36 4.26
2551 4917 5.003160 TCTAGCAAATAAGTTGAGCTTGCA 58.997 37.500 7.72 0.00 43.77 4.08
2552 4918 4.589216 AGCAAATAAGTTGAGCTTGCAA 57.411 36.364 0.00 0.00 43.77 4.08
2642 5124 7.840342 ATTTGTTGATTTTGTTGTACTGCAA 57.160 28.000 0.00 0.00 34.16 4.08
2688 5199 6.248433 TGCCCTGAAATAGATTTCTTTGTCT 58.752 36.000 14.42 0.00 44.85 3.41
2757 5274 6.599244 TGATCCCACTGAACTGAATTTATGAC 59.401 38.462 0.00 0.00 0.00 3.06
2830 5350 1.308998 CCGAAATAAGGCAGCGGATT 58.691 50.000 0.00 0.00 44.43 3.01
2891 5413 6.371595 TTGGTGCCCAATGAAGAATAAAAT 57.628 33.333 2.84 0.00 38.75 1.82
2892 5414 5.732633 TGGTGCCCAATGAAGAATAAAATG 58.267 37.500 0.00 0.00 0.00 2.32
2894 5416 6.172630 GGTGCCCAATGAAGAATAAAATGTT 58.827 36.000 0.00 0.00 0.00 2.71
2897 5426 7.173047 GTGCCCAATGAAGAATAAAATGTTGTT 59.827 33.333 0.00 0.00 0.00 2.83
2901 5430 7.877097 CCAATGAAGAATAAAATGTTGTTCCCA 59.123 33.333 1.73 1.87 35.94 4.37
2940 5471 1.296002 AAAAGGGGATTACCTCGGCT 58.704 50.000 0.00 0.00 42.51 5.52
2948 5479 2.139118 GATTACCTCGGCTTCTGCATC 58.861 52.381 0.00 0.00 41.91 3.91
2950 5481 1.123077 TACCTCGGCTTCTGCATCAT 58.877 50.000 0.00 0.00 41.91 2.45
2952 5483 1.486310 ACCTCGGCTTCTGCATCATAA 59.514 47.619 0.00 0.00 41.91 1.90
2955 5486 2.799412 CTCGGCTTCTGCATCATAAGAC 59.201 50.000 0.00 0.00 41.91 3.01
3007 5538 8.518430 AAACAAATAAAAAGAATGGCCAAACT 57.482 26.923 10.96 9.66 0.00 2.66
3008 5539 7.728847 ACAAATAAAAAGAATGGCCAAACTC 57.271 32.000 10.96 7.19 0.00 3.01
3009 5540 6.423604 ACAAATAAAAAGAATGGCCAAACTCG 59.576 34.615 10.96 0.00 0.00 4.18
3010 5541 5.975693 ATAAAAAGAATGGCCAAACTCGA 57.024 34.783 10.96 0.00 0.00 4.04
3011 5542 3.923017 AAAAGAATGGCCAAACTCGAG 57.077 42.857 10.96 11.84 0.00 4.04
3012 5543 2.859165 AAGAATGGCCAAACTCGAGA 57.141 45.000 21.68 0.00 0.00 4.04
3013 5544 3.356529 AAGAATGGCCAAACTCGAGAT 57.643 42.857 21.68 3.75 0.00 2.75
3014 5545 3.356529 AGAATGGCCAAACTCGAGATT 57.643 42.857 21.68 11.42 0.00 2.40
3015 5546 4.487714 AGAATGGCCAAACTCGAGATTA 57.512 40.909 21.68 0.00 0.00 1.75
3016 5547 4.192317 AGAATGGCCAAACTCGAGATTAC 58.808 43.478 21.68 9.14 0.00 1.89
3017 5548 3.627395 ATGGCCAAACTCGAGATTACA 57.373 42.857 21.68 13.38 0.00 2.41
3018 5549 3.627395 TGGCCAAACTCGAGATTACAT 57.373 42.857 21.68 0.00 0.00 2.29
3019 5550 4.746535 TGGCCAAACTCGAGATTACATA 57.253 40.909 21.68 0.00 0.00 2.29
3020 5551 4.693283 TGGCCAAACTCGAGATTACATAG 58.307 43.478 21.68 0.90 0.00 2.23
3021 5552 3.495001 GGCCAAACTCGAGATTACATAGC 59.505 47.826 21.68 11.38 0.00 2.97
3022 5553 4.372656 GCCAAACTCGAGATTACATAGCT 58.627 43.478 21.68 0.00 0.00 3.32
3023 5554 4.446051 GCCAAACTCGAGATTACATAGCTC 59.554 45.833 21.68 0.00 0.00 4.09
3024 5555 5.592054 CCAAACTCGAGATTACATAGCTCA 58.408 41.667 21.68 0.00 0.00 4.26
3025 5556 6.219473 CCAAACTCGAGATTACATAGCTCAT 58.781 40.000 21.68 0.00 0.00 2.90
3026 5557 6.364706 CCAAACTCGAGATTACATAGCTCATC 59.635 42.308 21.68 0.00 0.00 2.92
3027 5558 5.637006 ACTCGAGATTACATAGCTCATCC 57.363 43.478 21.68 0.00 0.00 3.51
3028 5559 5.073428 ACTCGAGATTACATAGCTCATCCA 58.927 41.667 21.68 0.00 0.00 3.41
3029 5560 5.714333 ACTCGAGATTACATAGCTCATCCAT 59.286 40.000 21.68 0.00 0.00 3.41
3030 5561 6.887002 ACTCGAGATTACATAGCTCATCCATA 59.113 38.462 21.68 0.00 0.00 2.74
3031 5562 7.559533 ACTCGAGATTACATAGCTCATCCATAT 59.440 37.037 21.68 0.00 0.00 1.78
3032 5563 8.980481 TCGAGATTACATAGCTCATCCATATA 57.020 34.615 0.00 0.00 0.00 0.86
3033 5564 9.408648 TCGAGATTACATAGCTCATCCATATAA 57.591 33.333 0.00 0.00 0.00 0.98
3051 5582 9.997172 TCCATATAATCTATGAGTATGAGTGGT 57.003 33.333 11.59 0.00 30.69 4.16
3056 5587 6.909550 ATCTATGAGTATGAGTGGTTCTCC 57.090 41.667 0.00 0.00 42.12 3.71
3057 5588 5.766590 TCTATGAGTATGAGTGGTTCTCCA 58.233 41.667 0.00 0.00 42.12 3.86
3058 5589 6.194967 TCTATGAGTATGAGTGGTTCTCCAA 58.805 40.000 0.00 0.00 46.15 3.53
3059 5590 5.965033 ATGAGTATGAGTGGTTCTCCAAT 57.035 39.130 0.00 0.00 46.15 3.16
3067 5598 3.490348 AGTGGTTCTCCAATCAAACTGG 58.510 45.455 0.00 0.00 46.15 4.00
3068 5599 3.117512 AGTGGTTCTCCAATCAAACTGGT 60.118 43.478 0.00 0.00 46.15 4.00
3069 5600 3.636764 GTGGTTCTCCAATCAAACTGGTT 59.363 43.478 0.00 0.00 46.15 3.67
3070 5601 3.636300 TGGTTCTCCAATCAAACTGGTTG 59.364 43.478 0.00 0.00 41.25 3.77
3071 5602 4.629939 TGGTTCTCCAATCAAACTGGTTGA 60.630 41.667 11.02 11.02 40.81 3.18
3072 5603 6.100989 TGGTTCTCCAATCAAACTGGTTGAA 61.101 40.000 12.76 0.00 40.81 2.69
3073 5604 7.370204 TGGTTCTCCAATCAAACTGGTTGAAT 61.370 38.462 12.76 0.35 40.81 2.57
3074 5605 8.128352 TGGTTCTCCAATCAAACTGGTTGAATA 61.128 37.037 12.76 0.00 40.81 1.75
3083 5614 5.746245 TCAAACTGGTTGAATAAACTTTGCG 59.254 36.000 5.50 0.00 43.43 4.85
3084 5615 3.638484 ACTGGTTGAATAAACTTTGCGC 58.362 40.909 0.00 0.00 38.92 6.09
3085 5616 3.067461 ACTGGTTGAATAAACTTTGCGCA 59.933 39.130 5.66 5.66 38.92 6.09
3086 5617 4.046938 TGGTTGAATAAACTTTGCGCAA 57.953 36.364 21.02 21.02 38.92 4.85
3087 5618 3.799420 TGGTTGAATAAACTTTGCGCAAC 59.201 39.130 24.99 9.35 38.92 4.17
3088 5619 4.048504 GGTTGAATAAACTTTGCGCAACT 58.951 39.130 24.99 8.15 38.92 3.16
3089 5620 4.085107 GGTTGAATAAACTTTGCGCAACTG 60.085 41.667 24.99 20.45 38.92 3.16
3090 5621 4.560136 TGAATAAACTTTGCGCAACTGA 57.440 36.364 24.99 7.70 0.00 3.41
3091 5622 5.119931 TGAATAAACTTTGCGCAACTGAT 57.880 34.783 24.99 12.38 0.00 2.90
3092 5623 5.527951 TGAATAAACTTTGCGCAACTGATT 58.472 33.333 24.99 20.06 0.00 2.57
3093 5624 5.629020 TGAATAAACTTTGCGCAACTGATTC 59.371 36.000 24.99 23.47 0.00 2.52
3094 5625 2.422276 AACTTTGCGCAACTGATTCC 57.578 45.000 24.99 0.00 0.00 3.01
3095 5626 1.317613 ACTTTGCGCAACTGATTCCA 58.682 45.000 24.99 4.29 0.00 3.53
3096 5627 1.267806 ACTTTGCGCAACTGATTCCAG 59.732 47.619 24.99 17.08 45.76 3.86
3097 5628 0.039256 TTTGCGCAACTGATTCCAGC 60.039 50.000 24.99 0.00 44.16 4.85
3098 5629 1.865788 TTGCGCAACTGATTCCAGCC 61.866 55.000 21.02 0.00 44.16 4.85
3099 5630 2.787249 CGCAACTGATTCCAGCCG 59.213 61.111 0.00 0.00 44.16 5.52
3100 5631 2.753966 CGCAACTGATTCCAGCCGG 61.754 63.158 0.00 0.00 44.16 6.13
3101 5632 3.056313 GCAACTGATTCCAGCCGGC 62.056 63.158 21.89 21.89 44.16 6.13
3102 5633 1.377725 CAACTGATTCCAGCCGGCT 60.378 57.895 27.08 27.08 44.16 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.315525 GCTCCTTTCGTTTCTAAATATAAGTCT 57.684 33.333 0.00 0.00 0.00 3.24
18 19 9.095065 TGCTCCTTTCGTTTCTAAATATAAGTC 57.905 33.333 0.00 0.00 0.00 3.01
19 20 9.099454 CTGCTCCTTTCGTTTCTAAATATAAGT 57.901 33.333 0.00 0.00 0.00 2.24
20 21 9.099454 ACTGCTCCTTTCGTTTCTAAATATAAG 57.901 33.333 0.00 0.00 0.00 1.73
22 23 9.745880 CTACTGCTCCTTTCGTTTCTAAATATA 57.254 33.333 0.00 0.00 0.00 0.86
23 24 8.258708 ACTACTGCTCCTTTCGTTTCTAAATAT 58.741 33.333 0.00 0.00 0.00 1.28
24 25 7.609056 ACTACTGCTCCTTTCGTTTCTAAATA 58.391 34.615 0.00 0.00 0.00 1.40
25 26 6.465084 ACTACTGCTCCTTTCGTTTCTAAAT 58.535 36.000 0.00 0.00 0.00 1.40
26 27 5.850614 ACTACTGCTCCTTTCGTTTCTAAA 58.149 37.500 0.00 0.00 0.00 1.85
27 28 5.464030 ACTACTGCTCCTTTCGTTTCTAA 57.536 39.130 0.00 0.00 0.00 2.10
28 29 6.579666 TTACTACTGCTCCTTTCGTTTCTA 57.420 37.500 0.00 0.00 0.00 2.10
29 30 5.464030 TTACTACTGCTCCTTTCGTTTCT 57.536 39.130 0.00 0.00 0.00 2.52
30 31 6.535274 TTTTACTACTGCTCCTTTCGTTTC 57.465 37.500 0.00 0.00 0.00 2.78
31 32 6.930667 TTTTTACTACTGCTCCTTTCGTTT 57.069 33.333 0.00 0.00 0.00 3.60
54 55 6.746364 CGTATCGTGCTAGTTCTCTACTTTTT 59.254 38.462 0.00 0.00 38.33 1.94
55 56 6.093219 TCGTATCGTGCTAGTTCTCTACTTTT 59.907 38.462 0.00 0.00 38.33 2.27
56 57 5.583854 TCGTATCGTGCTAGTTCTCTACTTT 59.416 40.000 0.00 0.00 38.33 2.66
57 58 5.006552 GTCGTATCGTGCTAGTTCTCTACTT 59.993 44.000 0.00 0.00 38.33 2.24
58 59 4.507388 GTCGTATCGTGCTAGTTCTCTACT 59.493 45.833 0.00 0.00 41.04 2.57
59 60 4.269603 TGTCGTATCGTGCTAGTTCTCTAC 59.730 45.833 0.00 0.00 0.00 2.59
60 61 4.269603 GTGTCGTATCGTGCTAGTTCTCTA 59.730 45.833 0.00 0.00 0.00 2.43
61 62 3.063725 GTGTCGTATCGTGCTAGTTCTCT 59.936 47.826 0.00 0.00 0.00 3.10
62 63 3.063725 AGTGTCGTATCGTGCTAGTTCTC 59.936 47.826 0.00 0.00 0.00 2.87
63 64 3.008330 AGTGTCGTATCGTGCTAGTTCT 58.992 45.455 0.00 0.00 0.00 3.01
64 65 3.352652 GAGTGTCGTATCGTGCTAGTTC 58.647 50.000 0.00 0.00 0.00 3.01
65 66 2.097142 GGAGTGTCGTATCGTGCTAGTT 59.903 50.000 0.00 0.00 0.00 2.24
66 67 1.669779 GGAGTGTCGTATCGTGCTAGT 59.330 52.381 0.00 0.00 0.00 2.57
67 68 1.332993 CGGAGTGTCGTATCGTGCTAG 60.333 57.143 0.00 0.00 0.00 3.42
68 69 0.654160 CGGAGTGTCGTATCGTGCTA 59.346 55.000 0.00 0.00 0.00 3.49
69 70 1.022982 TCGGAGTGTCGTATCGTGCT 61.023 55.000 0.00 0.00 0.00 4.40
70 71 0.860618 GTCGGAGTGTCGTATCGTGC 60.861 60.000 0.00 0.00 0.00 5.34
71 72 0.725686 AGTCGGAGTGTCGTATCGTG 59.274 55.000 0.00 0.00 0.00 4.35
72 73 2.200067 CTAGTCGGAGTGTCGTATCGT 58.800 52.381 0.00 0.00 0.00 3.73
73 74 2.200067 ACTAGTCGGAGTGTCGTATCG 58.800 52.381 0.00 0.00 0.00 2.92
74 75 4.615949 TCTACTAGTCGGAGTGTCGTATC 58.384 47.826 0.00 0.00 0.00 2.24
75 76 4.340666 TCTCTACTAGTCGGAGTGTCGTAT 59.659 45.833 18.97 0.00 0.00 3.06
76 77 3.696548 TCTCTACTAGTCGGAGTGTCGTA 59.303 47.826 18.97 3.46 0.00 3.43
77 78 2.495270 TCTCTACTAGTCGGAGTGTCGT 59.505 50.000 18.97 0.00 0.00 4.34
78 79 3.162202 TCTCTACTAGTCGGAGTGTCG 57.838 52.381 18.97 2.40 0.00 4.35
79 80 4.506758 AGTTCTCTACTAGTCGGAGTGTC 58.493 47.826 18.97 12.98 34.56 3.67
80 81 4.556592 AGTTCTCTACTAGTCGGAGTGT 57.443 45.455 18.97 7.86 34.56 3.55
90 91 6.811634 AGCACTCCTACTAGTTCTCTACTA 57.188 41.667 0.00 0.00 38.33 1.82
91 92 5.703730 AGCACTCCTACTAGTTCTCTACT 57.296 43.478 0.00 0.00 41.04 2.57
92 93 6.480981 CACTAGCACTCCTACTAGTTCTCTAC 59.519 46.154 0.00 0.00 45.25 2.59
93 94 6.408320 CCACTAGCACTCCTACTAGTTCTCTA 60.408 46.154 0.00 0.00 45.25 2.43
94 95 5.433526 CACTAGCACTCCTACTAGTTCTCT 58.566 45.833 0.00 0.00 45.25 3.10
95 96 4.577283 CCACTAGCACTCCTACTAGTTCTC 59.423 50.000 0.00 0.00 45.25 2.87
96 97 4.018233 ACCACTAGCACTCCTACTAGTTCT 60.018 45.833 0.00 0.00 45.25 3.01
97 98 4.096682 CACCACTAGCACTCCTACTAGTTC 59.903 50.000 0.00 0.00 45.25 3.01
98 99 4.017808 CACCACTAGCACTCCTACTAGTT 58.982 47.826 0.00 0.00 45.25 2.24
100 101 3.622630 ACACCACTAGCACTCCTACTAG 58.377 50.000 0.00 0.00 41.38 2.57
101 102 3.733883 ACACCACTAGCACTCCTACTA 57.266 47.619 0.00 0.00 0.00 1.82
102 103 2.606751 ACACCACTAGCACTCCTACT 57.393 50.000 0.00 0.00 0.00 2.57
103 104 3.679824 AAACACCACTAGCACTCCTAC 57.320 47.619 0.00 0.00 0.00 3.18
104 105 4.413760 ACTAAACACCACTAGCACTCCTA 58.586 43.478 0.00 0.00 0.00 2.94
105 106 3.240302 ACTAAACACCACTAGCACTCCT 58.760 45.455 0.00 0.00 0.00 3.69
106 107 3.679824 ACTAAACACCACTAGCACTCC 57.320 47.619 0.00 0.00 0.00 3.85
107 108 5.634020 CAGTAACTAAACACCACTAGCACTC 59.366 44.000 0.00 0.00 0.00 3.51
108 109 5.303589 TCAGTAACTAAACACCACTAGCACT 59.696 40.000 0.00 0.00 0.00 4.40
109 110 5.535333 TCAGTAACTAAACACCACTAGCAC 58.465 41.667 0.00 0.00 0.00 4.40
124 125 1.183549 ATTCGACGGCCTCAGTAACT 58.816 50.000 0.00 0.00 0.00 2.24
160 161 1.019673 CTCATTTGACCATGCCTCCG 58.980 55.000 0.00 0.00 0.00 4.63
175 176 2.233676 TGGTTGCTCATCACGTACTCAT 59.766 45.455 0.00 0.00 0.00 2.90
230 231 6.090493 CCTGGCTCTTTTACTTTTACGTACTC 59.910 42.308 0.00 0.00 0.00 2.59
231 232 5.930569 CCTGGCTCTTTTACTTTTACGTACT 59.069 40.000 0.00 0.00 0.00 2.73
235 236 3.119955 GGCCTGGCTCTTTTACTTTTACG 60.120 47.826 19.68 0.00 0.00 3.18
274 275 3.939939 TCACTCCAAGCCAGCGCA 61.940 61.111 11.47 0.00 37.52 6.09
282 287 7.358066 GCAAACATATATCATGTCACTCCAAG 58.642 38.462 0.00 0.00 0.00 3.61
283 288 6.262944 GGCAAACATATATCATGTCACTCCAA 59.737 38.462 0.00 0.00 0.00 3.53
284 289 5.764686 GGCAAACATATATCATGTCACTCCA 59.235 40.000 0.00 0.00 0.00 3.86
285 290 5.106948 CGGCAAACATATATCATGTCACTCC 60.107 44.000 0.00 0.00 0.00 3.85
288 293 5.106948 CCTCGGCAAACATATATCATGTCAC 60.107 44.000 0.00 0.00 0.00 3.67
289 294 4.996758 CCTCGGCAAACATATATCATGTCA 59.003 41.667 0.00 0.00 0.00 3.58
290 295 4.393062 CCCTCGGCAAACATATATCATGTC 59.607 45.833 0.00 0.00 0.00 3.06
291 296 4.326826 CCCTCGGCAAACATATATCATGT 58.673 43.478 0.00 0.00 0.00 3.21
292 297 4.952262 CCCTCGGCAAACATATATCATG 57.048 45.455 0.00 0.00 0.00 3.07
334 339 0.106217 AACCACCACTTGAACCCCTG 60.106 55.000 0.00 0.00 0.00 4.45
436 461 1.430632 GTTGTCGCCATGGCTCATG 59.569 57.895 33.07 18.40 41.10 3.07
437 462 2.108514 CGTTGTCGCCATGGCTCAT 61.109 57.895 33.07 0.00 39.32 2.90
438 463 2.741985 CGTTGTCGCCATGGCTCA 60.742 61.111 33.07 26.82 39.32 4.26
439 464 2.740714 GACGTTGTCGCCATGGCTC 61.741 63.158 33.07 24.71 41.18 4.70
440 465 2.742372 GACGTTGTCGCCATGGCT 60.742 61.111 33.07 13.87 41.18 4.75
449 474 1.069022 TGCACTAGGTACGACGTTGTC 60.069 52.381 12.83 4.33 0.00 3.18
450 475 0.953727 TGCACTAGGTACGACGTTGT 59.046 50.000 14.07 14.07 0.00 3.32
451 476 1.334054 GTGCACTAGGTACGACGTTG 58.666 55.000 10.32 0.00 0.00 4.10
452 477 3.780925 GTGCACTAGGTACGACGTT 57.219 52.632 10.32 0.00 0.00 3.99
458 483 2.095372 GGAAATTGCGTGCACTAGGTAC 59.905 50.000 16.19 1.03 0.00 3.34
459 484 2.352388 GGAAATTGCGTGCACTAGGTA 58.648 47.619 16.19 0.00 0.00 3.08
460 485 1.165270 GGAAATTGCGTGCACTAGGT 58.835 50.000 16.19 0.00 0.00 3.08
488 513 2.484062 GGCGCAGATGTTGGATGGG 61.484 63.158 10.83 0.00 0.00 4.00
503 529 2.125326 TACGGGACAGGATCAGGCG 61.125 63.158 0.00 0.00 0.00 5.52
521 547 1.676014 GGTATTGCGTTCTCCAGCTGT 60.676 52.381 13.81 0.00 0.00 4.40
522 548 1.009829 GGTATTGCGTTCTCCAGCTG 58.990 55.000 6.78 6.78 0.00 4.24
530 556 1.705727 CGGTGTCGGTATTGCGTTC 59.294 57.895 0.00 0.00 0.00 3.95
558 584 0.469892 TGTCACTCTCCTGCTGGTGA 60.470 55.000 13.02 13.02 36.52 4.02
561 587 2.486472 AAATGTCACTCTCCTGCTGG 57.514 50.000 2.58 2.58 0.00 4.85
565 591 3.193691 ACGGAGTAAATGTCACTCTCCTG 59.806 47.826 0.00 0.00 41.94 3.86
618 644 2.362736 TCCATCGTGCTACTACTTCGT 58.637 47.619 0.00 0.00 0.00 3.85
619 645 3.106672 GTTCCATCGTGCTACTACTTCG 58.893 50.000 0.00 0.00 0.00 3.79
724 762 4.980434 CGTTCGTTTCTGTAGGAAGAGAAA 59.020 41.667 0.00 0.00 41.33 2.52
728 766 3.316029 TGACGTTCGTTTCTGTAGGAAGA 59.684 43.478 0.00 0.00 35.16 2.87
736 774 2.190161 TGAGTGTGACGTTCGTTTCTG 58.810 47.619 0.00 0.00 0.00 3.02
739 777 4.142773 ACATTTTGAGTGTGACGTTCGTTT 60.143 37.500 0.00 0.00 0.00 3.60
747 785 7.411804 CCAAGAAAACAACATTTTGAGTGTGAC 60.412 37.037 0.00 0.00 36.48 3.67
776 814 3.877508 CCTACCTTTTCTCGGGCTAATTG 59.122 47.826 0.00 0.00 0.00 2.32
829 874 7.389607 GGCTGTACAGGAAAAGATACTTGTTTA 59.610 37.037 23.95 0.00 0.00 2.01
834 879 5.491982 CTGGCTGTACAGGAAAAGATACTT 58.508 41.667 23.95 0.00 34.84 2.24
836 881 3.623510 GCTGGCTGTACAGGAAAAGATAC 59.376 47.826 23.95 4.05 38.90 2.24
838 883 2.619074 GGCTGGCTGTACAGGAAAAGAT 60.619 50.000 23.95 0.00 38.90 2.40
845 890 0.035152 TCATTGGCTGGCTGTACAGG 60.035 55.000 23.95 8.99 38.90 4.00
847 892 0.677731 GCTCATTGGCTGGCTGTACA 60.678 55.000 2.00 0.00 0.00 2.90
872 917 0.693767 ATAGAGGCAGGGCAAGAGCT 60.694 55.000 0.00 0.00 41.70 4.09
873 918 1.051812 TATAGAGGCAGGGCAAGAGC 58.948 55.000 0.00 0.00 41.10 4.09
876 921 4.457257 GCTTATTTATAGAGGCAGGGCAAG 59.543 45.833 0.00 0.00 0.00 4.01
1383 1431 3.716195 TCTGGGATGGGTGTGGCG 61.716 66.667 0.00 0.00 0.00 5.69
1386 1434 1.200760 TCCAGTCTGGGATGGGTGTG 61.201 60.000 19.11 0.00 38.32 3.82
1387 1435 0.475632 TTCCAGTCTGGGATGGGTGT 60.476 55.000 19.11 0.00 38.32 4.16
1389 1437 0.119155 TCTTCCAGTCTGGGATGGGT 59.881 55.000 19.11 0.00 38.32 4.51
1430 1487 0.588252 CGTGCACAGGACAGGAAAAG 59.412 55.000 18.64 0.00 0.00 2.27
1436 1493 0.530650 AACAGACGTGCACAGGACAG 60.531 55.000 18.64 1.21 0.00 3.51
1484 1547 1.586154 AAACCTTGCCATCTTCGCGG 61.586 55.000 6.13 0.00 0.00 6.46
1499 1565 1.949257 CCACAACGGCAGAGAAACC 59.051 57.895 0.00 0.00 0.00 3.27
1510 1578 2.688507 ACATAGAGTTCTGCCACAACG 58.311 47.619 0.00 0.00 0.00 4.10
1527 1595 3.118665 GCAAACCATGGAGGCATAAACAT 60.119 43.478 21.47 0.00 43.14 2.71
1537 1605 7.647715 CGTTATAATAAAAGGCAAACCATGGAG 59.352 37.037 21.47 9.02 39.06 3.86
1544 1612 9.997482 TTCTGATCGTTATAATAAAAGGCAAAC 57.003 29.630 0.00 0.00 0.00 2.93
1558 1801 6.214191 ACACTCTGATGTTCTGATCGTTAT 57.786 37.500 0.00 0.00 0.00 1.89
1562 1805 4.488879 TCAACACTCTGATGTTCTGATCG 58.511 43.478 3.53 0.00 40.89 3.69
1570 1813 6.767456 AGAGAGAAAATCAACACTCTGATGT 58.233 36.000 0.00 0.00 39.39 3.06
1728 3616 4.873746 TGTCTTGGAGAAGGTAGTTCAG 57.126 45.455 0.00 0.00 37.67 3.02
1735 3992 2.439507 TGAAGCTTGTCTTGGAGAAGGT 59.560 45.455 2.10 3.83 43.60 3.50
1736 3993 2.810852 GTGAAGCTTGTCTTGGAGAAGG 59.189 50.000 2.10 0.00 34.18 3.46
1879 4141 7.570140 CGCTGCTGGTTTTGTATGAAGATATAG 60.570 40.741 0.00 0.00 0.00 1.31
1913 4179 2.094854 GCAAATCAAAGACAGCTCCAGG 60.095 50.000 0.00 0.00 0.00 4.45
1945 4211 8.634335 TCACAAAGAAAAATAGGACATCATCA 57.366 30.769 0.00 0.00 0.00 3.07
1988 4272 3.191078 AGTAACTGATCAGCCATGAGC 57.809 47.619 22.83 6.31 42.33 4.26
1989 4273 5.528043 AGTAGTAACTGATCAGCCATGAG 57.472 43.478 22.83 0.00 34.82 2.90
2002 4286 2.290323 CCTGCCAAAGCCAGTAGTAACT 60.290 50.000 0.00 0.00 38.69 2.24
2003 4287 2.084546 CCTGCCAAAGCCAGTAGTAAC 58.915 52.381 0.00 0.00 38.69 2.50
2004 4288 1.702957 ACCTGCCAAAGCCAGTAGTAA 59.297 47.619 0.00 0.00 38.69 2.24
2005 4289 1.003118 CACCTGCCAAAGCCAGTAGTA 59.997 52.381 0.00 0.00 38.69 1.82
2006 4290 0.250901 CACCTGCCAAAGCCAGTAGT 60.251 55.000 0.00 0.00 38.69 2.73
2007 4291 0.036732 TCACCTGCCAAAGCCAGTAG 59.963 55.000 0.00 0.00 38.69 2.57
2008 4292 0.698238 ATCACCTGCCAAAGCCAGTA 59.302 50.000 0.00 0.00 38.69 2.74
2009 4293 0.896940 CATCACCTGCCAAAGCCAGT 60.897 55.000 0.00 0.00 38.69 4.00
2010 4294 0.609957 TCATCACCTGCCAAAGCCAG 60.610 55.000 0.00 0.00 38.69 4.85
2011 4295 0.040058 ATCATCACCTGCCAAAGCCA 59.960 50.000 0.00 0.00 38.69 4.75
2012 4296 0.743097 GATCATCACCTGCCAAAGCC 59.257 55.000 0.00 0.00 38.69 4.35
2013 4297 0.743097 GGATCATCACCTGCCAAAGC 59.257 55.000 0.00 0.00 40.48 3.51
2104 4424 1.856539 TAGTCCCGAGTTCCCGACCT 61.857 60.000 0.00 0.00 0.00 3.85
2106 4426 1.382692 CCTAGTCCCGAGTTCCCGAC 61.383 65.000 0.00 0.00 0.00 4.79
2107 4427 1.077212 CCTAGTCCCGAGTTCCCGA 60.077 63.158 0.00 0.00 0.00 5.14
2108 4428 2.125961 CCCTAGTCCCGAGTTCCCG 61.126 68.421 0.00 0.00 0.00 5.14
2109 4429 0.105607 ATCCCTAGTCCCGAGTTCCC 60.106 60.000 0.00 0.00 0.00 3.97
2113 4433 1.233369 CCCATCCCTAGTCCCGAGT 59.767 63.158 0.00 0.00 0.00 4.18
2114 4434 2.210711 GCCCATCCCTAGTCCCGAG 61.211 68.421 0.00 0.00 0.00 4.63
2128 4448 0.329261 AAGCATCTTAGCACAGCCCA 59.671 50.000 0.00 0.00 36.85 5.36
2129 4449 1.020437 GAAGCATCTTAGCACAGCCC 58.980 55.000 0.00 0.00 36.85 5.19
2130 4450 0.654683 CGAAGCATCTTAGCACAGCC 59.345 55.000 0.00 0.00 36.85 4.85
2131 4451 0.654683 CCGAAGCATCTTAGCACAGC 59.345 55.000 0.00 0.00 36.85 4.40
2132 4452 2.015736 ACCGAAGCATCTTAGCACAG 57.984 50.000 0.00 0.00 36.85 3.66
2133 4453 2.076100 CAACCGAAGCATCTTAGCACA 58.924 47.619 0.00 0.00 36.85 4.57
2135 4455 2.289382 TGTCAACCGAAGCATCTTAGCA 60.289 45.455 0.00 0.00 36.85 3.49
2137 4457 3.935203 ACATGTCAACCGAAGCATCTTAG 59.065 43.478 0.00 0.00 0.00 2.18
2139 4459 2.485426 CACATGTCAACCGAAGCATCTT 59.515 45.455 0.00 0.00 0.00 2.40
2141 4461 1.806542 ACACATGTCAACCGAAGCATC 59.193 47.619 0.00 0.00 0.00 3.91
2142 4462 1.536766 CACACATGTCAACCGAAGCAT 59.463 47.619 0.00 0.00 0.00 3.79
2143 4463 0.943673 CACACATGTCAACCGAAGCA 59.056 50.000 0.00 0.00 0.00 3.91
2144 4464 0.385974 GCACACATGTCAACCGAAGC 60.386 55.000 0.00 0.00 0.00 3.86
2145 4465 1.229428 AGCACACATGTCAACCGAAG 58.771 50.000 0.00 0.00 0.00 3.79
2146 4466 2.535012 TAGCACACATGTCAACCGAA 57.465 45.000 0.00 0.00 0.00 4.30
2147 4467 2.036604 TCTTAGCACACATGTCAACCGA 59.963 45.455 0.00 0.00 0.00 4.69
2148 4468 2.412870 TCTTAGCACACATGTCAACCG 58.587 47.619 0.00 0.00 0.00 4.44
2149 4469 3.127548 CCATCTTAGCACACATGTCAACC 59.872 47.826 0.00 0.00 0.00 3.77
2150 4470 3.127548 CCCATCTTAGCACACATGTCAAC 59.872 47.826 0.00 0.00 0.00 3.18
2151 4471 3.346315 CCCATCTTAGCACACATGTCAA 58.654 45.455 0.00 0.00 0.00 3.18
2179 4503 0.250901 TTCAGCTTCAGCCACCTTCC 60.251 55.000 0.00 0.00 43.38 3.46
2254 4591 4.521639 TCTGTTATGTTATCCCGATAGCGT 59.478 41.667 0.00 0.00 35.23 5.07
2333 4670 3.823873 ACATATCGGCTCGAGATTTCTCT 59.176 43.478 18.75 0.00 35.60 3.10
2347 4684 6.479990 TCATTAAAGCTCAGACAACATATCGG 59.520 38.462 0.00 0.00 0.00 4.18
2394 4733 4.642437 TGCATGTTTAAAACACCTCTGACA 59.358 37.500 0.00 0.00 45.50 3.58
2399 4758 6.922957 TCTGAATTGCATGTTTAAAACACCTC 59.077 34.615 0.00 0.00 45.50 3.85
2407 4766 5.620654 GCAGCTCTCTGAATTGCATGTTTAA 60.621 40.000 0.00 0.00 42.95 1.52
2427 4790 3.935203 TGCAGAATAGAAACACTAGCAGC 59.065 43.478 0.00 0.00 34.35 5.25
2443 4806 6.417258 TCCTAGTGATCATTTCAATGCAGAA 58.583 36.000 0.00 0.00 35.70 3.02
2447 4810 4.820716 AGCTCCTAGTGATCATTTCAATGC 59.179 41.667 0.00 0.00 35.70 3.56
2449 4812 5.131642 TGGAGCTCCTAGTGATCATTTCAAT 59.868 40.000 32.28 0.00 36.45 2.57
2453 4816 4.472833 AGTTGGAGCTCCTAGTGATCATTT 59.527 41.667 32.28 3.44 36.82 2.32
2503 4868 7.661040 AGCCAATAATCTACCAACATATTTGC 58.339 34.615 0.00 0.00 0.00 3.68
2513 4879 5.887214 TTGCTAGAGCCAATAATCTACCA 57.113 39.130 0.00 0.00 41.18 3.25
2522 4888 5.067023 GCTCAACTTATTTGCTAGAGCCAAT 59.933 40.000 6.15 6.15 40.68 3.16
2523 4889 4.396166 GCTCAACTTATTTGCTAGAGCCAA 59.604 41.667 0.00 0.00 40.68 4.52
2524 4890 3.941483 GCTCAACTTATTTGCTAGAGCCA 59.059 43.478 0.00 0.00 40.68 4.75
2525 4891 4.195416 AGCTCAACTTATTTGCTAGAGCC 58.805 43.478 0.00 0.00 45.93 4.70
2526 4892 5.567552 CAAGCTCAACTTATTTGCTAGAGC 58.432 41.667 0.00 0.00 45.32 4.09
2527 4893 5.122869 TGCAAGCTCAACTTATTTGCTAGAG 59.877 40.000 8.68 0.00 43.29 2.43
2528 4894 5.003160 TGCAAGCTCAACTTATTTGCTAGA 58.997 37.500 8.68 0.00 43.29 2.43
2529 4895 5.300969 TGCAAGCTCAACTTATTTGCTAG 57.699 39.130 8.68 0.00 43.29 3.42
2532 4898 4.925054 TGATTGCAAGCTCAACTTATTTGC 59.075 37.500 16.73 0.89 43.21 3.68
2533 4899 6.588756 ACATGATTGCAAGCTCAACTTATTTG 59.411 34.615 16.73 6.20 36.04 2.32
2534 4900 6.694447 ACATGATTGCAAGCTCAACTTATTT 58.306 32.000 16.73 0.00 36.04 1.40
2536 4902 5.909621 ACATGATTGCAAGCTCAACTTAT 57.090 34.783 16.73 0.00 36.04 1.73
2537 4903 5.335897 GGAACATGATTGCAAGCTCAACTTA 60.336 40.000 16.73 0.00 36.04 2.24
2538 4904 4.553323 GAACATGATTGCAAGCTCAACTT 58.447 39.130 16.73 5.88 40.05 2.66
2539 4905 3.057033 GGAACATGATTGCAAGCTCAACT 60.057 43.478 16.73 0.00 0.00 3.16
2540 4906 3.057033 AGGAACATGATTGCAAGCTCAAC 60.057 43.478 16.73 3.91 0.00 3.18
2541 4907 3.159472 AGGAACATGATTGCAAGCTCAA 58.841 40.909 16.73 0.00 0.00 3.02
2542 4908 2.799017 AGGAACATGATTGCAAGCTCA 58.201 42.857 16.73 10.74 0.00 4.26
2543 4909 3.863142 AAGGAACATGATTGCAAGCTC 57.137 42.857 16.73 4.58 0.00 4.09
2544 4910 3.575256 TCAAAGGAACATGATTGCAAGCT 59.425 39.130 16.73 0.00 0.00 3.74
2545 4911 3.916761 TCAAAGGAACATGATTGCAAGC 58.083 40.909 7.99 7.99 0.00 4.01
2660 5171 8.037166 ACAAAGAAATCTATTTCAGGGCAAATC 58.963 33.333 15.76 0.00 46.50 2.17
2661 5172 7.910584 ACAAAGAAATCTATTTCAGGGCAAAT 58.089 30.769 15.76 0.00 46.50 2.32
2781 5301 2.736978 CTCAGTTAGCTATGTCGCCTG 58.263 52.381 0.00 0.00 0.00 4.85
2881 5403 7.360113 ACACTGGGAACAACATTTTATTCTT 57.640 32.000 0.00 0.00 42.06 2.52
2919 5448 1.749063 GCCGAGGTAATCCCCTTTTTG 59.251 52.381 0.00 0.00 34.03 2.44
2920 5449 1.639108 AGCCGAGGTAATCCCCTTTTT 59.361 47.619 0.00 0.00 34.03 1.94
2935 5466 2.799562 CGTCTTATGATGCAGAAGCCGA 60.800 50.000 0.00 0.00 36.41 5.54
2940 5471 5.418676 TCATGAACGTCTTATGATGCAGAA 58.581 37.500 0.00 0.00 32.64 3.02
2981 5512 8.965819 AGTTTGGCCATTCTTTTTATTTGTTTT 58.034 25.926 6.09 0.00 0.00 2.43
2982 5513 8.518430 AGTTTGGCCATTCTTTTTATTTGTTT 57.482 26.923 6.09 0.00 0.00 2.83
2983 5514 7.042119 CGAGTTTGGCCATTCTTTTTATTTGTT 60.042 33.333 6.09 0.00 0.00 2.83
2984 5515 6.423604 CGAGTTTGGCCATTCTTTTTATTTGT 59.576 34.615 6.09 0.00 0.00 2.83
2985 5516 6.644592 TCGAGTTTGGCCATTCTTTTTATTTG 59.355 34.615 6.09 0.00 0.00 2.32
2986 5517 6.754193 TCGAGTTTGGCCATTCTTTTTATTT 58.246 32.000 6.09 0.00 0.00 1.40
2987 5518 6.208599 TCTCGAGTTTGGCCATTCTTTTTATT 59.791 34.615 6.09 0.00 0.00 1.40
2988 5519 5.710099 TCTCGAGTTTGGCCATTCTTTTTAT 59.290 36.000 6.09 0.00 0.00 1.40
2989 5520 5.067273 TCTCGAGTTTGGCCATTCTTTTTA 58.933 37.500 6.09 0.00 0.00 1.52
2990 5521 3.888930 TCTCGAGTTTGGCCATTCTTTTT 59.111 39.130 6.09 0.00 0.00 1.94
2991 5522 3.486383 TCTCGAGTTTGGCCATTCTTTT 58.514 40.909 6.09 0.00 0.00 2.27
2992 5523 3.140325 TCTCGAGTTTGGCCATTCTTT 57.860 42.857 6.09 0.00 0.00 2.52
2993 5524 2.859165 TCTCGAGTTTGGCCATTCTT 57.141 45.000 6.09 0.00 0.00 2.52
2994 5525 3.356529 AATCTCGAGTTTGGCCATTCT 57.643 42.857 6.09 8.26 0.00 2.40
2995 5526 3.938963 TGTAATCTCGAGTTTGGCCATTC 59.061 43.478 17.14 4.12 0.00 2.67
2996 5527 3.950397 TGTAATCTCGAGTTTGGCCATT 58.050 40.909 17.14 8.41 0.00 3.16
2997 5528 3.627395 TGTAATCTCGAGTTTGGCCAT 57.373 42.857 17.14 0.00 0.00 4.40
2998 5529 3.627395 ATGTAATCTCGAGTTTGGCCA 57.373 42.857 17.14 0.00 0.00 5.36
2999 5530 3.495001 GCTATGTAATCTCGAGTTTGGCC 59.505 47.826 17.14 0.00 0.00 5.36
3000 5531 4.372656 AGCTATGTAATCTCGAGTTTGGC 58.627 43.478 17.14 12.66 0.00 4.52
3001 5532 5.592054 TGAGCTATGTAATCTCGAGTTTGG 58.408 41.667 17.14 5.29 0.00 3.28
3002 5533 6.364706 GGATGAGCTATGTAATCTCGAGTTTG 59.635 42.308 17.14 3.20 0.00 2.93
3003 5534 6.040955 TGGATGAGCTATGTAATCTCGAGTTT 59.959 38.462 13.13 13.08 0.00 2.66
3004 5535 5.536538 TGGATGAGCTATGTAATCTCGAGTT 59.463 40.000 13.13 8.74 0.00 3.01
3005 5536 5.073428 TGGATGAGCTATGTAATCTCGAGT 58.927 41.667 13.13 0.00 0.00 4.18
3006 5537 5.635417 TGGATGAGCTATGTAATCTCGAG 57.365 43.478 5.93 5.93 0.00 4.04
3007 5538 7.888250 ATATGGATGAGCTATGTAATCTCGA 57.112 36.000 0.00 0.00 0.00 4.04
3025 5556 9.997172 ACCACTCATACTCATAGATTATATGGA 57.003 33.333 0.00 0.00 0.00 3.41
3030 5561 9.030452 GGAGAACCACTCATACTCATAGATTAT 57.970 37.037 0.00 0.00 46.54 1.28
3031 5562 8.004801 TGGAGAACCACTCATACTCATAGATTA 58.995 37.037 0.00 0.00 46.54 1.75
3032 5563 6.841229 TGGAGAACCACTCATACTCATAGATT 59.159 38.462 0.00 0.00 46.54 2.40
3033 5564 6.377080 TGGAGAACCACTCATACTCATAGAT 58.623 40.000 0.00 0.00 46.54 1.98
3034 5565 5.766590 TGGAGAACCACTCATACTCATAGA 58.233 41.667 0.00 0.00 46.54 1.98
3035 5566 6.471233 TTGGAGAACCACTCATACTCATAG 57.529 41.667 0.00 0.00 46.80 2.23
3036 5567 6.611236 TGATTGGAGAACCACTCATACTCATA 59.389 38.462 0.00 0.00 46.15 2.15
3037 5568 5.426509 TGATTGGAGAACCACTCATACTCAT 59.573 40.000 0.00 0.00 46.15 2.90
3038 5569 4.777366 TGATTGGAGAACCACTCATACTCA 59.223 41.667 0.00 0.00 46.15 3.41
3039 5570 5.344743 TGATTGGAGAACCACTCATACTC 57.655 43.478 0.00 0.00 46.15 2.59
3045 5576 3.503748 CCAGTTTGATTGGAGAACCACTC 59.496 47.826 0.00 0.00 46.80 3.51
3046 5577 3.117512 ACCAGTTTGATTGGAGAACCACT 60.118 43.478 0.00 0.00 46.80 4.00
3047 5578 3.222603 ACCAGTTTGATTGGAGAACCAC 58.777 45.455 0.00 0.00 46.80 4.16
3048 5579 3.593442 ACCAGTTTGATTGGAGAACCA 57.407 42.857 0.00 0.00 45.34 3.67
3049 5580 3.888930 TCAACCAGTTTGATTGGAGAACC 59.111 43.478 0.00 0.00 39.45 3.62
3050 5581 5.514274 TTCAACCAGTTTGATTGGAGAAC 57.486 39.130 0.00 0.00 43.99 3.01
3051 5582 7.831691 TTATTCAACCAGTTTGATTGGAGAA 57.168 32.000 0.00 2.97 43.99 2.87
3052 5583 7.505585 AGTTTATTCAACCAGTTTGATTGGAGA 59.494 33.333 0.00 0.00 43.99 3.71
3053 5584 7.661040 AGTTTATTCAACCAGTTTGATTGGAG 58.339 34.615 0.00 0.00 43.99 3.86
3054 5585 7.595819 AGTTTATTCAACCAGTTTGATTGGA 57.404 32.000 0.00 0.00 43.99 3.53
3055 5586 8.550376 CAAAGTTTATTCAACCAGTTTGATTGG 58.450 33.333 0.00 0.00 43.99 3.16
3056 5587 8.063630 GCAAAGTTTATTCAACCAGTTTGATTG 58.936 33.333 0.00 0.00 43.99 2.67
3057 5588 7.042791 CGCAAAGTTTATTCAACCAGTTTGATT 60.043 33.333 0.00 0.00 43.99 2.57
3058 5589 6.420604 CGCAAAGTTTATTCAACCAGTTTGAT 59.579 34.615 0.00 0.00 43.99 2.57
3059 5590 5.746245 CGCAAAGTTTATTCAACCAGTTTGA 59.254 36.000 0.00 0.00 42.83 2.69
3060 5591 5.556194 GCGCAAAGTTTATTCAACCAGTTTG 60.556 40.000 0.30 0.00 35.77 2.93
3061 5592 4.506288 GCGCAAAGTTTATTCAACCAGTTT 59.494 37.500 0.30 0.00 35.77 2.66
3062 5593 4.048504 GCGCAAAGTTTATTCAACCAGTT 58.951 39.130 0.30 0.00 35.77 3.16
3063 5594 3.067461 TGCGCAAAGTTTATTCAACCAGT 59.933 39.130 8.16 0.00 35.77 4.00
3064 5595 3.637432 TGCGCAAAGTTTATTCAACCAG 58.363 40.909 8.16 0.00 35.77 4.00
3065 5596 3.717400 TGCGCAAAGTTTATTCAACCA 57.283 38.095 8.16 0.00 35.77 3.67
3066 5597 4.048504 AGTTGCGCAAAGTTTATTCAACC 58.951 39.130 26.87 7.44 35.77 3.77
3067 5598 4.737765 TCAGTTGCGCAAAGTTTATTCAAC 59.262 37.500 26.87 8.49 35.32 3.18
3068 5599 4.926244 TCAGTTGCGCAAAGTTTATTCAA 58.074 34.783 26.87 0.00 0.00 2.69
3069 5600 4.560136 TCAGTTGCGCAAAGTTTATTCA 57.440 36.364 26.87 0.00 0.00 2.57
3070 5601 5.060940 GGAATCAGTTGCGCAAAGTTTATTC 59.939 40.000 26.87 24.36 0.00 1.75
3071 5602 4.923281 GGAATCAGTTGCGCAAAGTTTATT 59.077 37.500 26.87 18.67 0.00 1.40
3072 5603 4.022416 TGGAATCAGTTGCGCAAAGTTTAT 60.022 37.500 26.87 11.31 0.00 1.40
3073 5604 3.316588 TGGAATCAGTTGCGCAAAGTTTA 59.683 39.130 26.87 9.35 0.00 2.01
3074 5605 2.100584 TGGAATCAGTTGCGCAAAGTTT 59.899 40.909 26.87 19.96 0.00 2.66
3075 5606 1.680735 TGGAATCAGTTGCGCAAAGTT 59.319 42.857 26.87 16.42 0.00 2.66
3076 5607 1.267806 CTGGAATCAGTTGCGCAAAGT 59.732 47.619 26.87 12.80 36.30 2.66
3077 5608 1.973138 CTGGAATCAGTTGCGCAAAG 58.027 50.000 26.87 20.27 36.30 2.77
3078 5609 0.039256 GCTGGAATCAGTTGCGCAAA 60.039 50.000 26.87 10.39 42.78 3.68
3079 5610 1.580942 GCTGGAATCAGTTGCGCAA 59.419 52.632 21.02 21.02 42.78 4.85
3080 5611 2.334946 GGCTGGAATCAGTTGCGCA 61.335 57.895 5.66 5.66 42.78 6.09
3081 5612 2.486966 GGCTGGAATCAGTTGCGC 59.513 61.111 0.00 0.00 42.78 6.09
3082 5613 2.753966 CCGGCTGGAATCAGTTGCG 61.754 63.158 5.28 0.00 42.78 4.85
3083 5614 3.056313 GCCGGCTGGAATCAGTTGC 62.056 63.158 22.15 0.00 42.78 4.17
3084 5615 1.377725 AGCCGGCTGGAATCAGTTG 60.378 57.895 32.33 0.00 42.78 3.16
3085 5616 3.081554 AGCCGGCTGGAATCAGTT 58.918 55.556 32.33 0.00 42.78 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.