Multiple sequence alignment - TraesCS3A01G396500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G396500 chr3A 100.000 6403 0 0 1 6403 643752189 643745787 0.000000e+00 11825
1 TraesCS3A01G396500 chr3B 94.059 2727 116 20 3194 5906 667385344 667382650 0.000000e+00 4096
2 TraesCS3A01G396500 chr3B 93.337 1891 84 9 1330 3197 667387629 667385758 0.000000e+00 2756
3 TraesCS3A01G396500 chr3B 93.364 437 28 1 879 1314 667388272 667387836 0.000000e+00 645
4 TraesCS3A01G396500 chr3B 85.653 467 44 10 1 445 667389317 667388852 2.700000e-128 470
5 TraesCS3A01G396500 chr3B 90.419 334 15 12 460 777 667388867 667388535 2.130000e-114 424
6 TraesCS3A01G396500 chr3B 87.671 365 39 6 5925 6287 580790051 580789691 2.760000e-113 420
7 TraesCS3A01G396500 chr3B 87.123 365 42 5 5925 6286 13422702 13423064 5.980000e-110 409
8 TraesCS3A01G396500 chr3D 93.020 1891 87 12 1330 3197 505560686 505558818 0.000000e+00 2719
9 TraesCS3A01G396500 chr3D 96.986 1294 38 1 3194 4487 505558683 505557391 0.000000e+00 2172
10 TraesCS3A01G396500 chr3D 94.460 1408 51 9 4484 5877 505557311 505555917 0.000000e+00 2143
11 TraesCS3A01G396500 chr3D 92.674 819 50 6 461 1273 505561736 505560922 0.000000e+00 1171
12 TraesCS3A01G396500 chr3D 86.327 373 42 8 5925 6292 442978862 442978494 1.290000e-106 398
13 TraesCS3A01G396500 chr3D 88.652 282 16 6 1 266 505562226 505561945 4.790000e-86 329
14 TraesCS3A01G396500 chr2D 88.587 368 34 8 5925 6286 618123497 618123862 2.120000e-119 440
15 TraesCS3A01G396500 chr2A 87.603 363 41 4 5925 6286 765513951 765513592 9.930000e-113 418
16 TraesCS3A01G396500 chr2A 87.432 366 39 6 5925 6286 19378379 19378741 1.280000e-111 414
17 TraesCS3A01G396500 chr1D 87.363 364 40 6 5925 6286 143545282 143544923 4.620000e-111 412
18 TraesCS3A01G396500 chr5D 86.777 363 43 5 5925 6286 114642977 114643335 3.600000e-107 399
19 TraesCS3A01G396500 chr1B 86.777 363 42 6 5925 6286 602245925 602246282 3.600000e-107 399


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G396500 chr3A 643745787 643752189 6402 True 11825.0 11825 100.0000 1 6403 1 chr3A.!!$R1 6402
1 TraesCS3A01G396500 chr3B 667382650 667389317 6667 True 1678.2 4096 91.3664 1 5906 5 chr3B.!!$R2 5905
2 TraesCS3A01G396500 chr3D 505555917 505562226 6309 True 1706.8 2719 93.1584 1 5877 5 chr3D.!!$R2 5876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 412 0.441145 GACCGTGTTTGGTATGACGC 59.559 55.000 0.00 0.00 44.01 5.19 F
989 1256 0.545787 TTTGGCGGGACTCCTCCTAA 60.546 55.000 0.00 0.00 38.71 2.69 F
1314 1581 0.168128 GCGAATTGAGTGGTTTCGGG 59.832 55.000 6.44 0.00 41.78 5.14 F
1315 1582 0.802494 CGAATTGAGTGGTTTCGGGG 59.198 55.000 0.00 0.00 38.77 5.73 F
1460 1922 1.593265 GCCCATTGTTGCAGAAGGG 59.407 57.895 4.65 4.65 39.33 3.95 F
2532 2995 1.607178 CCATTTGACAGGCTGCCCA 60.607 57.895 16.57 10.34 0.00 5.36 F
3647 4554 0.517316 GGTTACCTGCAACTTCAGCG 59.483 55.000 0.00 0.00 32.87 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 1560 0.168128 CGAAACCACTCAATTCGCCC 59.832 55.000 0.0 0.0 39.36 6.13 R
1909 2371 0.462047 ACGGAACTGGCGATGATTCC 60.462 55.000 0.0 0.0 37.79 3.01 R
2784 3247 0.592637 CCAGCATTTTCACTGTCGCA 59.407 50.000 0.0 0.0 31.76 5.10 R
3007 3492 3.455543 AGGCCCCAAATGAATGTTAATGG 59.544 43.478 0.0 0.0 0.00 3.16 R
3449 4356 1.826720 TCCCAAATTTCATCAGCAGGC 59.173 47.619 0.0 0.0 0.00 4.85 R
3833 4740 0.874390 ACGCAATGTCACATGTCACC 59.126 50.000 0.0 0.0 0.00 4.02 R
5455 6473 0.524862 GTGCATGGTGGAGAGCAAAG 59.475 55.000 0.0 0.0 38.91 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.396790 TGAATTTGGACGCTATTTGGTACC 59.603 41.667 4.43 4.43 0.00 3.34
43 44 1.065709 CGCTATTTGGTACCCACCTGT 60.066 52.381 10.07 0.00 45.98 4.00
44 45 2.168936 CGCTATTTGGTACCCACCTGTA 59.831 50.000 10.07 0.00 45.98 2.74
45 46 3.740141 CGCTATTTGGTACCCACCTGTAG 60.740 52.174 10.07 4.71 45.98 2.74
48 49 5.452917 GCTATTTGGTACCCACCTGTAGTAG 60.453 48.000 10.07 0.74 45.98 2.57
49 50 3.548162 TTGGTACCCACCTGTAGTAGT 57.452 47.619 10.07 0.00 45.98 2.73
50 51 4.673328 TTGGTACCCACCTGTAGTAGTA 57.327 45.455 10.07 0.00 45.98 1.82
51 52 3.968265 TGGTACCCACCTGTAGTAGTAC 58.032 50.000 10.07 0.37 45.98 2.73
52 53 3.593328 TGGTACCCACCTGTAGTAGTACT 59.407 47.826 10.07 8.14 45.98 2.73
53 54 4.044571 TGGTACCCACCTGTAGTAGTACTT 59.955 45.833 10.07 0.00 45.98 2.24
54 55 4.642437 GGTACCCACCTGTAGTAGTACTTC 59.358 50.000 8.40 3.89 42.11 3.01
55 56 3.706183 ACCCACCTGTAGTAGTACTTCC 58.294 50.000 8.40 0.53 0.00 3.46
56 57 3.029570 CCCACCTGTAGTAGTACTTCCC 58.970 54.545 8.40 0.00 0.00 3.97
57 58 3.309701 CCCACCTGTAGTAGTACTTCCCT 60.310 52.174 8.40 0.00 0.00 4.20
58 59 4.079558 CCCACCTGTAGTAGTACTTCCCTA 60.080 50.000 8.40 0.00 0.00 3.53
145 164 4.114794 GCAATAGTTTCATGCCATTCACC 58.885 43.478 0.00 0.00 34.03 4.02
182 201 4.935808 CGGGTAATCCTAGCCAATTATGAC 59.064 45.833 1.69 0.00 44.66 3.06
201 220 1.140252 ACGGACCAAAGTAAGCACTGT 59.860 47.619 0.00 0.00 34.36 3.55
226 245 3.744719 GGAAAAGCCCCGCGGTTC 61.745 66.667 26.12 19.83 0.00 3.62
266 285 0.923358 TCCACAGGGACACCAAAGTT 59.077 50.000 0.00 0.00 38.64 2.66
267 286 1.032014 CCACAGGGACACCAAAGTTG 58.968 55.000 0.00 0.00 40.13 3.16
331 406 5.768662 TGAAATATTTGGACCGTGTTTGGTA 59.231 36.000 5.17 0.00 44.01 3.25
337 412 0.441145 GACCGTGTTTGGTATGACGC 59.559 55.000 0.00 0.00 44.01 5.19
448 532 6.553953 TGGTAACAGGATAATAAGCACAGA 57.446 37.500 0.00 0.00 46.17 3.41
449 533 7.136822 TGGTAACAGGATAATAAGCACAGAT 57.863 36.000 0.00 0.00 46.17 2.90
450 534 7.573710 TGGTAACAGGATAATAAGCACAGATT 58.426 34.615 0.00 0.00 46.17 2.40
451 535 8.710239 TGGTAACAGGATAATAAGCACAGATTA 58.290 33.333 0.00 0.00 46.17 1.75
452 536 9.726438 GGTAACAGGATAATAAGCACAGATTAT 57.274 33.333 0.00 0.00 32.20 1.28
455 539 9.851686 AACAGGATAATAAGCACAGATTATCAA 57.148 29.630 13.70 0.00 42.82 2.57
456 540 9.851686 ACAGGATAATAAGCACAGATTATCAAA 57.148 29.630 13.70 0.00 42.82 2.69
494 578 2.937591 CATTTCATGCGTGCAGAAACT 58.062 42.857 16.21 7.88 34.47 2.66
505 589 4.613031 GCGTGCAGAAACTGAAGAAAATAC 59.387 41.667 2.81 0.00 32.44 1.89
581 671 3.139077 GGCAAGATGTTAATACGAGGGG 58.861 50.000 0.00 0.00 0.00 4.79
597 687 1.078637 GGGCCTCCTACGGAAACAC 60.079 63.158 0.84 0.00 0.00 3.32
666 756 2.354805 CCTTTCCCCTTTCGTTCTCGAT 60.355 50.000 0.00 0.00 45.65 3.59
736 831 1.152839 GACCTCTCCCTCTCCTCCG 60.153 68.421 0.00 0.00 0.00 4.63
737 832 2.520741 CCTCTCCCTCTCCTCCGC 60.521 72.222 0.00 0.00 0.00 5.54
738 833 2.600731 CTCTCCCTCTCCTCCGCT 59.399 66.667 0.00 0.00 0.00 5.52
744 839 4.465446 CTCTCCTCCGCTCCCCCA 62.465 72.222 0.00 0.00 0.00 4.96
745 840 3.765257 CTCTCCTCCGCTCCCCCAT 62.765 68.421 0.00 0.00 0.00 4.00
746 841 2.770048 CTCCTCCGCTCCCCCATT 60.770 66.667 0.00 0.00 0.00 3.16
747 842 3.089874 TCCTCCGCTCCCCCATTG 61.090 66.667 0.00 0.00 0.00 2.82
896 1162 4.141965 CCCGGCCCGCAATTTTCC 62.142 66.667 0.00 0.00 0.00 3.13
917 1183 1.668419 CGATTTCTGGGGCGATTTCT 58.332 50.000 0.00 0.00 0.00 2.52
969 1236 2.960129 CCGAATCGTACGCAGGGC 60.960 66.667 11.24 0.00 0.00 5.19
987 1254 2.203938 TTTGGCGGGACTCCTCCT 60.204 61.111 0.00 0.00 38.71 3.69
988 1255 0.976073 CTTTGGCGGGACTCCTCCTA 60.976 60.000 0.00 0.00 38.71 2.94
989 1256 0.545787 TTTGGCGGGACTCCTCCTAA 60.546 55.000 0.00 0.00 38.71 2.69
1041 1308 3.216292 GTGTGCCACGCCAAGGTT 61.216 61.111 0.00 0.00 0.00 3.50
1131 1398 0.729116 CGCTTAACGTCCTCCTCGTA 59.271 55.000 0.00 0.00 40.69 3.43
1213 1480 2.076863 GGTGTTATCAGTGTGTCTGGC 58.923 52.381 0.00 0.00 43.76 4.85
1215 1482 1.977854 TGTTATCAGTGTGTCTGGCCT 59.022 47.619 3.32 0.00 43.76 5.19
1226 1493 1.347707 TGTCTGGCCTGTCTCGAATTT 59.652 47.619 3.32 0.00 0.00 1.82
1245 1512 6.408858 AATTTGCTAAGTGTCATACTGTCG 57.591 37.500 0.00 0.00 40.26 4.35
1268 1535 6.520792 GTGTAACGATTGAACAGTTAGTGT 57.479 37.500 0.00 0.00 43.24 3.55
1280 1547 1.800586 AGTTAGTGTTGTGCTGCGATG 59.199 47.619 0.00 0.00 0.00 3.84
1293 1560 2.831770 CGATGGGATGGTGGAGGG 59.168 66.667 0.00 0.00 0.00 4.30
1311 1578 0.526211 GGGGCGAATTGAGTGGTTTC 59.474 55.000 0.00 0.00 0.00 2.78
1314 1581 0.168128 GCGAATTGAGTGGTTTCGGG 59.832 55.000 6.44 0.00 41.78 5.14
1315 1582 0.802494 CGAATTGAGTGGTTTCGGGG 59.198 55.000 0.00 0.00 38.77 5.73
1316 1583 1.880646 CGAATTGAGTGGTTTCGGGGT 60.881 52.381 0.00 0.00 38.77 4.95
1318 1585 3.414269 GAATTGAGTGGTTTCGGGGTTA 58.586 45.455 0.00 0.00 0.00 2.85
1319 1586 3.512219 ATTGAGTGGTTTCGGGGTTAA 57.488 42.857 0.00 0.00 0.00 2.01
1321 1588 3.512219 TGAGTGGTTTCGGGGTTAATT 57.488 42.857 0.00 0.00 0.00 1.40
1322 1589 4.637387 TGAGTGGTTTCGGGGTTAATTA 57.363 40.909 0.00 0.00 0.00 1.40
1323 1590 4.983053 TGAGTGGTTTCGGGGTTAATTAA 58.017 39.130 0.00 0.00 0.00 1.40
1324 1591 5.572252 TGAGTGGTTTCGGGGTTAATTAAT 58.428 37.500 0.31 0.00 0.00 1.40
1325 1592 6.011481 TGAGTGGTTTCGGGGTTAATTAATT 58.989 36.000 5.89 5.89 0.00 1.40
1326 1593 6.151480 TGAGTGGTTTCGGGGTTAATTAATTC 59.849 38.462 3.39 0.00 0.00 2.17
1327 1594 5.124297 AGTGGTTTCGGGGTTAATTAATTCG 59.876 40.000 3.39 1.98 0.00 3.34
1328 1595 4.142425 TGGTTTCGGGGTTAATTAATTCGC 60.142 41.667 3.39 0.00 0.00 4.70
1345 1807 2.158559 TCGCTGTTTTGTGCATATGGT 58.841 42.857 4.56 0.00 0.00 3.55
1351 1813 5.058149 TGTTTTGTGCATATGGTTAGCTG 57.942 39.130 4.56 0.00 0.00 4.24
1357 1819 3.496130 GTGCATATGGTTAGCTGCAGTAG 59.504 47.826 16.64 0.00 44.57 2.57
1403 1865 3.070748 GGAGTTTCCTGAGCTCTGTTTC 58.929 50.000 16.19 6.85 32.53 2.78
1413 1875 3.243670 TGAGCTCTGTTTCTCAGTGTCAG 60.244 47.826 16.19 0.00 43.97 3.51
1418 1880 5.728898 GCTCTGTTTCTCAGTGTCAGTTTTG 60.729 44.000 0.00 0.00 43.97 2.44
1420 1882 6.403049 TCTGTTTCTCAGTGTCAGTTTTGTA 58.597 36.000 0.00 0.00 43.97 2.41
1431 1893 8.916654 CAGTGTCAGTTTTGTATTACTAGAGTG 58.083 37.037 0.00 0.00 0.00 3.51
1447 1909 2.758327 TGACTAGACGGCGCCCAT 60.758 61.111 23.46 9.74 0.00 4.00
1460 1922 1.593265 GCCCATTGTTGCAGAAGGG 59.407 57.895 4.65 4.65 39.33 3.95
1503 1965 6.305693 AGTACTGATGTTTTGAAGTGCTTC 57.694 37.500 0.00 5.07 32.56 3.86
1542 2004 7.128331 CACTGTATACTGATGTTAGCATTTGC 58.872 38.462 15.84 0.00 42.49 3.68
1554 2016 2.504367 AGCATTTGCCTAGAAACACGT 58.496 42.857 0.00 0.00 43.38 4.49
1582 2044 4.551388 CTGCCTGTAGAAGAACCGATATC 58.449 47.826 0.00 0.00 0.00 1.63
1583 2045 4.215908 TGCCTGTAGAAGAACCGATATCT 58.784 43.478 0.34 0.00 0.00 1.98
1584 2046 4.038042 TGCCTGTAGAAGAACCGATATCTG 59.962 45.833 0.34 0.00 0.00 2.90
1585 2047 4.551388 CCTGTAGAAGAACCGATATCTGC 58.449 47.826 0.34 0.00 0.00 4.26
1586 2048 4.279671 CCTGTAGAAGAACCGATATCTGCT 59.720 45.833 0.34 0.00 36.71 4.24
1587 2049 5.221342 CCTGTAGAAGAACCGATATCTGCTT 60.221 44.000 0.34 0.00 34.53 3.91
1588 2050 6.016192 CCTGTAGAAGAACCGATATCTGCTTA 60.016 42.308 0.34 0.00 34.53 3.09
1589 2051 6.736123 TGTAGAAGAACCGATATCTGCTTAC 58.264 40.000 0.34 0.00 34.53 2.34
1590 2052 6.546403 TGTAGAAGAACCGATATCTGCTTACT 59.454 38.462 0.34 0.00 34.53 2.24
1591 2053 7.718314 TGTAGAAGAACCGATATCTGCTTACTA 59.282 37.037 0.34 0.00 34.53 1.82
1592 2054 7.768807 AGAAGAACCGATATCTGCTTACTAT 57.231 36.000 0.34 0.00 27.61 2.12
1593 2055 7.822658 AGAAGAACCGATATCTGCTTACTATC 58.177 38.462 0.34 0.00 27.61 2.08
1594 2056 7.668052 AGAAGAACCGATATCTGCTTACTATCT 59.332 37.037 0.34 0.00 27.61 1.98
1700 2162 6.382869 AAATTATGTAGCCAACTGAGCATC 57.617 37.500 0.00 0.00 0.00 3.91
1710 2172 2.943690 CAACTGAGCATCTTCATCCAGG 59.056 50.000 0.00 0.00 34.92 4.45
1726 2188 9.793252 CTTCATCCAGGTTTTCATTAACTTATG 57.207 33.333 0.00 0.00 0.00 1.90
1746 2208 2.038689 TGGGCATTTCATGTTGCACATT 59.961 40.909 15.59 0.00 46.76 2.71
1909 2371 3.057969 TGCTGTTCTTCCAGGTATGTG 57.942 47.619 0.00 0.00 32.92 3.21
1953 2415 7.566760 TGTAATCCGTTGCTTTGATATGATT 57.433 32.000 0.00 0.00 0.00 2.57
1960 2422 5.898606 CGTTGCTTTGATATGATTCGTCTTC 59.101 40.000 0.00 0.00 0.00 2.87
2049 2511 5.335661 GGTGTTCTGTTTGTTCACTTGAGTT 60.336 40.000 0.00 0.00 0.00 3.01
2061 2523 2.102578 ACTTGAGTTTGCTGCCAAGTT 58.897 42.857 13.20 1.95 44.57 2.66
2249 2711 4.203226 TCAACATTTGTGCAGGTGAGTAA 58.797 39.130 0.00 0.00 0.00 2.24
2406 2869 7.595502 GCTACACGATAGCATAACTTAACTGAT 59.404 37.037 15.54 0.00 40.14 2.90
2532 2995 1.607178 CCATTTGACAGGCTGCCCA 60.607 57.895 16.57 10.34 0.00 5.36
2626 3089 6.156429 AGGTAAAGAATTGATAAGACCTCGGT 59.844 38.462 0.00 0.00 30.08 4.69
2631 3094 9.462606 AAAGAATTGATAAGACCTCGGTAATTT 57.537 29.630 0.00 0.00 0.00 1.82
2655 3118 5.938125 TGACTTGGCATAGTAACCTTTTCTC 59.062 40.000 0.00 0.00 0.00 2.87
2727 3190 5.964958 ATTGGTGTAACTTGAATCTGGTG 57.035 39.130 0.00 0.00 36.74 4.17
2752 3215 7.768120 TGCAAAATTTCTAACCAACAGAATTGT 59.232 29.630 0.00 0.00 39.87 2.71
2784 3247 8.210946 TGTGTTATGCAGCTATACTTTAATCCT 58.789 33.333 0.00 0.00 0.00 3.24
2920 3405 2.604614 GGCCACACATTCTTTCGTTCAC 60.605 50.000 0.00 0.00 0.00 3.18
3007 3492 4.866486 CAGTTTTGGAATATGCCTTTCAGC 59.134 41.667 0.11 0.00 0.00 4.26
3449 4356 5.437289 TCAAACAATTTGTGCCTGAGTAG 57.563 39.130 2.13 0.00 41.36 2.57
3455 4362 1.483595 TTGTGCCTGAGTAGCCTGCT 61.484 55.000 0.00 0.00 0.00 4.24
3647 4554 0.517316 GGTTACCTGCAACTTCAGCG 59.483 55.000 0.00 0.00 32.87 5.18
3775 4682 5.163509 GGGGACAATATGGAGCTTTTCTTTC 60.164 44.000 0.00 0.00 0.00 2.62
3866 4773 4.155449 ACATTGCGTACTAATTTTGTGCG 58.845 39.130 14.73 14.73 44.12 5.34
3894 4801 1.544724 TAACAGTTCCTGCATTGGCC 58.455 50.000 0.00 0.00 40.13 5.36
3991 4898 7.661536 TGTGTACTCTTCTATGGCTATTTCT 57.338 36.000 0.00 0.00 0.00 2.52
3995 4902 6.798427 ACTCTTCTATGGCTATTTCTGTCA 57.202 37.500 0.00 0.00 0.00 3.58
4079 4986 7.493971 TCTCTAAAAAGCTACTTCTCATCATGC 59.506 37.037 0.00 0.00 0.00 4.06
4084 4991 4.440880 AGCTACTTCTCATCATGCTTGTC 58.559 43.478 0.00 0.00 0.00 3.18
4104 5011 9.899226 GCTTGTCATCTTTACAGAACTTATTTT 57.101 29.630 0.00 0.00 30.76 1.82
4158 5065 0.321919 GCTTGTGATCACTGCCCTCA 60.322 55.000 25.55 1.47 0.00 3.86
4178 5085 5.591877 CCTCATCCAAGGTAATTTTCTGGAG 59.408 44.000 0.00 0.00 0.00 3.86
4179 5086 6.139679 TCATCCAAGGTAATTTTCTGGAGT 57.860 37.500 0.00 0.00 0.00 3.85
4180 5087 7.265599 TCATCCAAGGTAATTTTCTGGAGTA 57.734 36.000 0.00 0.00 0.00 2.59
4181 5088 7.110155 TCATCCAAGGTAATTTTCTGGAGTAC 58.890 38.462 0.00 0.00 0.00 2.73
4182 5089 6.442541 TCCAAGGTAATTTTCTGGAGTACA 57.557 37.500 0.00 0.00 0.00 2.90
4183 5090 7.027874 TCCAAGGTAATTTTCTGGAGTACAT 57.972 36.000 0.00 0.00 0.00 2.29
4184 5091 7.110155 TCCAAGGTAATTTTCTGGAGTACATC 58.890 38.462 0.00 0.00 0.00 3.06
4185 5092 7.037586 TCCAAGGTAATTTTCTGGAGTACATCT 60.038 37.037 0.00 0.00 0.00 2.90
4186 5093 7.281100 CCAAGGTAATTTTCTGGAGTACATCTC 59.719 40.741 0.00 0.00 42.07 2.75
4187 5094 7.741554 AGGTAATTTTCTGGAGTACATCTCT 57.258 36.000 0.00 0.00 42.40 3.10
4188 5095 8.152023 AGGTAATTTTCTGGAGTACATCTCTT 57.848 34.615 0.00 0.00 42.40 2.85
4189 5096 8.606830 AGGTAATTTTCTGGAGTACATCTCTTT 58.393 33.333 0.00 0.00 42.40 2.52
4190 5097 8.884726 GGTAATTTTCTGGAGTACATCTCTTTC 58.115 37.037 0.00 0.00 42.40 2.62
4191 5098 9.436957 GTAATTTTCTGGAGTACATCTCTTTCA 57.563 33.333 0.00 0.00 42.40 2.69
4198 5105 8.981659 TCTGGAGTACATCTCTTTCATGATAAA 58.018 33.333 0.00 0.00 42.40 1.40
4456 5378 6.544650 TGTTACCAGCATAAAAACTTCCCTA 58.455 36.000 0.00 0.00 0.00 3.53
4490 5495 3.436704 ACATGCTCTTGAAATGTACCACG 59.563 43.478 0.00 0.00 32.86 4.94
4502 5507 7.360575 GAAATGTACCACGTTTCTTCAGTAT 57.639 36.000 14.01 0.00 45.74 2.12
4563 5568 7.275920 ACACACCAAAACTTTGCCATTAAATA 58.724 30.769 0.00 0.00 36.86 1.40
4590 5595 8.547967 TCAGCATCTAACTAATCGAAGTTTTT 57.452 30.769 7.75 0.00 40.20 1.94
4609 5614 7.136772 AGTTTTTGCTTAAAATCGGAGTACAC 58.863 34.615 0.00 0.00 37.98 2.90
4613 5618 6.621316 TGCTTAAAATCGGAGTACACAAAA 57.379 33.333 0.00 0.00 0.00 2.44
4652 5657 8.079211 AGCACTAATTATTCAGTCCTAAGTCA 57.921 34.615 0.00 0.00 0.00 3.41
4655 5660 9.265901 CACTAATTATTCAGTCCTAAGTCATGG 57.734 37.037 0.00 0.00 0.00 3.66
4724 5729 9.974980 AATTTGGTTACTGTATGTTAGTTTTGG 57.025 29.630 0.00 0.00 0.00 3.28
4758 5764 5.179045 GGTGAGATTCAGCACATTAATGG 57.821 43.478 19.37 9.51 43.79 3.16
4818 5824 1.626321 TCGCCACAATCTTTACTGGGA 59.374 47.619 0.00 0.00 0.00 4.37
4964 5970 9.281371 GAAGTTACTTCTACCCTTACATGTTTT 57.719 33.333 16.96 0.00 37.49 2.43
5075 6081 4.150627 CAGGTCAGTCATGTTTTGTACTCG 59.849 45.833 0.00 0.00 0.00 4.18
5330 6345 5.843673 TGCCAAATTTGTAAGTCTGACAA 57.156 34.783 16.73 0.00 35.03 3.18
5411 6426 2.014857 CTTCCCGTCTGATGTCGTCTA 58.985 52.381 0.00 0.00 0.00 2.59
5432 6447 8.684520 CGTCTAGGAGGTATTTCTCTTCTTTTA 58.315 37.037 0.00 0.00 34.39 1.52
5455 6473 3.762823 ACGAATAGTACTAGCATAGGGCC 59.237 47.826 8.85 0.00 44.97 5.80
5457 6475 4.463186 CGAATAGTACTAGCATAGGGCCTT 59.537 45.833 13.45 0.00 44.97 4.35
5503 6521 6.773685 TGTGCATCTTATCAATGGATTCATCA 59.226 34.615 0.00 0.00 34.89 3.07
5535 6553 5.869344 CGGTCTGTCTTCTGAATGTTTATCA 59.131 40.000 0.00 0.00 0.00 2.15
5572 6590 4.602107 TCCGGTCCATATGTATATCCGAA 58.398 43.478 16.77 1.35 38.96 4.30
5580 6600 7.122948 GTCCATATGTATATCCGAACTCTTCCT 59.877 40.741 1.24 0.00 0.00 3.36
5581 6601 7.674348 TCCATATGTATATCCGAACTCTTCCTT 59.326 37.037 1.24 0.00 0.00 3.36
5599 6619 1.205655 CTTTCGACAGGGAGATGAGCA 59.794 52.381 0.00 0.00 0.00 4.26
5600 6620 0.820226 TTCGACAGGGAGATGAGCAG 59.180 55.000 0.00 0.00 0.00 4.24
5601 6621 1.227205 CGACAGGGAGATGAGCAGC 60.227 63.158 0.00 0.00 0.00 5.25
5602 6622 1.227205 GACAGGGAGATGAGCAGCG 60.227 63.158 0.00 0.00 0.00 5.18
5603 6623 1.954362 GACAGGGAGATGAGCAGCGT 61.954 60.000 0.00 0.00 0.00 5.07
5604 6624 0.684479 ACAGGGAGATGAGCAGCGTA 60.684 55.000 0.00 0.00 0.00 4.42
5713 6733 4.202050 GGCTGCACTATGATGTTTAAAGGG 60.202 45.833 0.50 0.00 0.00 3.95
5718 6738 6.120220 GCACTATGATGTTTAAAGGGGTACT 58.880 40.000 0.00 0.00 0.00 2.73
5741 6763 1.688735 CAGAGAGATGCCCATTCGGTA 59.311 52.381 0.00 0.00 0.00 4.02
5762 6784 3.570638 CGATGGCGAGCTTGCTGG 61.571 66.667 25.01 4.37 40.82 4.85
5864 6886 3.681593 TTTCAGCCCACATTCAAATGG 57.318 42.857 7.58 0.00 40.70 3.16
5885 6907 6.188400 TGGTTTCATCTTTTTGTTTTTGCC 57.812 33.333 0.00 0.00 0.00 4.52
5893 6915 2.409948 TTTGTTTTTGCCCAACCCAG 57.590 45.000 0.00 0.00 0.00 4.45
5900 6922 1.715019 TTGCCCAACCCAGTAGCAGT 61.715 55.000 0.00 0.00 34.45 4.40
5906 6928 2.814336 CCAACCCAGTAGCAGTTTCTTC 59.186 50.000 0.00 0.00 0.00 2.87
5907 6929 3.496870 CCAACCCAGTAGCAGTTTCTTCT 60.497 47.826 0.00 0.00 0.00 2.85
5908 6930 3.686916 ACCCAGTAGCAGTTTCTTCTC 57.313 47.619 0.00 0.00 0.00 2.87
5909 6931 2.028930 ACCCAGTAGCAGTTTCTTCTCG 60.029 50.000 0.00 0.00 0.00 4.04
5910 6932 2.231478 CCCAGTAGCAGTTTCTTCTCGA 59.769 50.000 0.00 0.00 0.00 4.04
5911 6933 3.506810 CCAGTAGCAGTTTCTTCTCGAG 58.493 50.000 5.93 5.93 0.00 4.04
5912 6934 3.191581 CCAGTAGCAGTTTCTTCTCGAGA 59.808 47.826 12.08 12.08 0.00 4.04
5913 6935 4.411327 CAGTAGCAGTTTCTTCTCGAGAG 58.589 47.826 15.94 10.08 35.37 3.20
5914 6936 4.076394 AGTAGCAGTTTCTTCTCGAGAGT 58.924 43.478 15.94 0.00 35.37 3.24
5915 6937 3.296322 AGCAGTTTCTTCTCGAGAGTG 57.704 47.619 15.94 12.60 35.37 3.51
5916 6938 2.029470 AGCAGTTTCTTCTCGAGAGTGG 60.029 50.000 15.94 10.10 35.37 4.00
5917 6939 2.333014 CAGTTTCTTCTCGAGAGTGGC 58.667 52.381 15.94 6.61 35.37 5.01
5918 6940 1.068194 AGTTTCTTCTCGAGAGTGGCG 60.068 52.381 15.94 3.63 35.37 5.69
5919 6941 0.959553 TTTCTTCTCGAGAGTGGCGT 59.040 50.000 15.94 0.00 35.37 5.68
5920 6942 0.959553 TTCTTCTCGAGAGTGGCGTT 59.040 50.000 15.94 0.00 35.37 4.84
5921 6943 0.959553 TCTTCTCGAGAGTGGCGTTT 59.040 50.000 15.94 0.00 0.00 3.60
5922 6944 1.340248 TCTTCTCGAGAGTGGCGTTTT 59.660 47.619 15.94 0.00 0.00 2.43
5923 6945 1.457303 CTTCTCGAGAGTGGCGTTTTG 59.543 52.381 15.94 0.00 0.00 2.44
5924 6946 0.671796 TCTCGAGAGTGGCGTTTTGA 59.328 50.000 12.08 0.00 0.00 2.69
5925 6947 1.272490 TCTCGAGAGTGGCGTTTTGAT 59.728 47.619 12.08 0.00 0.00 2.57
5926 6948 2.490509 TCTCGAGAGTGGCGTTTTGATA 59.509 45.455 12.08 0.00 0.00 2.15
5927 6949 3.130516 TCTCGAGAGTGGCGTTTTGATAT 59.869 43.478 12.08 0.00 0.00 1.63
5928 6950 4.337274 TCTCGAGAGTGGCGTTTTGATATA 59.663 41.667 12.08 0.00 0.00 0.86
5929 6951 4.357142 TCGAGAGTGGCGTTTTGATATAC 58.643 43.478 0.00 0.00 0.00 1.47
5930 6952 4.097437 TCGAGAGTGGCGTTTTGATATACT 59.903 41.667 0.00 0.00 0.00 2.12
5931 6953 4.441415 CGAGAGTGGCGTTTTGATATACTC 59.559 45.833 0.00 0.00 34.75 2.59
5932 6954 4.694339 AGAGTGGCGTTTTGATATACTCC 58.306 43.478 0.00 0.00 35.01 3.85
5933 6955 4.406003 AGAGTGGCGTTTTGATATACTCCT 59.594 41.667 0.00 0.00 35.01 3.69
5934 6956 4.442706 AGTGGCGTTTTGATATACTCCTG 58.557 43.478 0.00 0.00 0.00 3.86
5935 6957 3.560068 GTGGCGTTTTGATATACTCCTGG 59.440 47.826 0.00 0.00 0.00 4.45
5936 6958 3.452990 TGGCGTTTTGATATACTCCTGGA 59.547 43.478 0.00 0.00 0.00 3.86
5937 6959 4.102524 TGGCGTTTTGATATACTCCTGGAT 59.897 41.667 0.00 0.00 0.00 3.41
5938 6960 5.063880 GGCGTTTTGATATACTCCTGGATT 58.936 41.667 0.00 0.00 0.00 3.01
5939 6961 5.531287 GGCGTTTTGATATACTCCTGGATTT 59.469 40.000 0.00 0.00 0.00 2.17
5940 6962 6.039382 GGCGTTTTGATATACTCCTGGATTTT 59.961 38.462 0.00 0.00 0.00 1.82
5941 6963 7.227910 GGCGTTTTGATATACTCCTGGATTTTA 59.772 37.037 0.00 0.00 0.00 1.52
5942 6964 8.617809 GCGTTTTGATATACTCCTGGATTTTAA 58.382 33.333 0.00 0.00 0.00 1.52
5952 6974 7.839680 ACTCCTGGATTTTAAAATGTGTTCT 57.160 32.000 17.98 0.00 0.00 3.01
5953 6975 8.934023 ACTCCTGGATTTTAAAATGTGTTCTA 57.066 30.769 17.98 1.71 0.00 2.10
5954 6976 9.362151 ACTCCTGGATTTTAAAATGTGTTCTAA 57.638 29.630 17.98 0.00 0.00 2.10
5956 6978 9.974980 TCCTGGATTTTAAAATGTGTTCTAAAC 57.025 29.630 17.98 0.00 0.00 2.01
5957 6979 9.757227 CCTGGATTTTAAAATGTGTTCTAAACA 57.243 29.630 17.98 0.00 39.52 2.83
5991 7013 6.940831 TGTCACAAAATTCTGACAAGATGA 57.059 33.333 9.86 0.00 42.98 2.92
5992 7014 7.514784 TGTCACAAAATTCTGACAAGATGAT 57.485 32.000 9.86 0.00 42.98 2.45
5993 7015 7.944061 TGTCACAAAATTCTGACAAGATGATT 58.056 30.769 9.86 0.00 42.98 2.57
5994 7016 8.077991 TGTCACAAAATTCTGACAAGATGATTC 58.922 33.333 9.86 0.00 42.98 2.52
5995 7017 8.295288 GTCACAAAATTCTGACAAGATGATTCT 58.705 33.333 6.16 0.00 37.36 2.40
5996 7018 8.853126 TCACAAAATTCTGACAAGATGATTCTT 58.147 29.630 0.00 0.00 43.09 2.52
6008 7030 4.294232 AGATGATTCTTGCGTACATCTCG 58.706 43.478 0.00 0.00 42.23 4.04
6009 7031 3.775661 TGATTCTTGCGTACATCTCGA 57.224 42.857 0.00 0.00 0.00 4.04
6010 7032 4.307443 TGATTCTTGCGTACATCTCGAT 57.693 40.909 0.00 0.00 0.00 3.59
6011 7033 5.432885 TGATTCTTGCGTACATCTCGATA 57.567 39.130 0.00 0.00 0.00 2.92
6012 7034 6.013842 TGATTCTTGCGTACATCTCGATAT 57.986 37.500 0.00 0.00 0.00 1.63
6013 7035 6.447162 TGATTCTTGCGTACATCTCGATATT 58.553 36.000 0.00 0.00 0.00 1.28
6014 7036 6.582672 TGATTCTTGCGTACATCTCGATATTC 59.417 38.462 0.00 0.00 0.00 1.75
6015 7037 5.690997 TCTTGCGTACATCTCGATATTCT 57.309 39.130 0.00 0.00 0.00 2.40
6016 7038 6.796705 TCTTGCGTACATCTCGATATTCTA 57.203 37.500 0.00 0.00 0.00 2.10
6017 7039 6.600350 TCTTGCGTACATCTCGATATTCTAC 58.400 40.000 0.00 0.00 0.00 2.59
6018 7040 4.954442 TGCGTACATCTCGATATTCTACG 58.046 43.478 10.95 10.95 0.00 3.51
6019 7041 4.450080 TGCGTACATCTCGATATTCTACGT 59.550 41.667 14.36 0.00 0.00 3.57
6020 7042 4.782030 GCGTACATCTCGATATTCTACGTG 59.218 45.833 0.00 0.00 0.00 4.49
6021 7043 4.782030 CGTACATCTCGATATTCTACGTGC 59.218 45.833 0.00 0.00 0.00 5.34
6022 7044 4.830826 ACATCTCGATATTCTACGTGCA 57.169 40.909 0.00 0.00 0.00 4.57
6023 7045 5.378292 ACATCTCGATATTCTACGTGCAT 57.622 39.130 0.00 0.00 0.00 3.96
6024 7046 6.496338 ACATCTCGATATTCTACGTGCATA 57.504 37.500 0.00 0.00 0.00 3.14
6025 7047 7.089770 ACATCTCGATATTCTACGTGCATAT 57.910 36.000 0.00 0.00 0.00 1.78
6026 7048 8.209917 ACATCTCGATATTCTACGTGCATATA 57.790 34.615 0.00 0.00 0.00 0.86
6027 7049 8.674607 ACATCTCGATATTCTACGTGCATATAA 58.325 33.333 0.00 0.00 0.00 0.98
6028 7050 9.503427 CATCTCGATATTCTACGTGCATATAAA 57.497 33.333 0.00 0.00 0.00 1.40
6029 7051 8.891367 TCTCGATATTCTACGTGCATATAAAC 57.109 34.615 0.00 0.00 0.00 2.01
6030 7052 8.727910 TCTCGATATTCTACGTGCATATAAACT 58.272 33.333 0.00 0.00 0.00 2.66
6031 7053 8.891367 TCGATATTCTACGTGCATATAAACTC 57.109 34.615 0.00 0.00 0.00 3.01
6032 7054 7.691050 TCGATATTCTACGTGCATATAAACTCG 59.309 37.037 0.00 0.00 0.00 4.18
6033 7055 7.480855 CGATATTCTACGTGCATATAAACTCGT 59.519 37.037 0.00 9.46 39.15 4.18
6034 7056 9.125906 GATATTCTACGTGCATATAAACTCGTT 57.874 33.333 0.00 0.00 37.25 3.85
6035 7057 7.766219 ATTCTACGTGCATATAAACTCGTTT 57.234 32.000 0.00 0.35 37.25 3.60
6036 7058 8.861033 ATTCTACGTGCATATAAACTCGTTTA 57.139 30.769 0.00 4.87 39.12 2.01
6037 7059 7.903452 TCTACGTGCATATAAACTCGTTTAG 57.097 36.000 0.00 4.54 38.30 1.85
6038 7060 7.475015 TCTACGTGCATATAAACTCGTTTAGT 58.525 34.615 0.00 2.37 41.49 2.24
6039 7061 6.327177 ACGTGCATATAAACTCGTTTAGTG 57.673 37.500 8.09 9.61 38.88 2.74
6040 7062 5.290158 ACGTGCATATAAACTCGTTTAGTGG 59.710 40.000 8.09 2.09 38.88 4.00
6041 7063 5.517411 CGTGCATATAAACTCGTTTAGTGGA 59.483 40.000 8.09 7.69 38.88 4.02
6042 7064 6.035220 CGTGCATATAAACTCGTTTAGTGGAA 59.965 38.462 8.09 0.00 38.88 3.53
6043 7065 7.412129 CGTGCATATAAACTCGTTTAGTGGAAA 60.412 37.037 8.09 0.00 38.88 3.13
6044 7066 8.231837 GTGCATATAAACTCGTTTAGTGGAAAA 58.768 33.333 8.09 0.00 38.88 2.29
6045 7067 8.952278 TGCATATAAACTCGTTTAGTGGAAAAT 58.048 29.630 8.09 0.00 38.88 1.82
6046 7068 9.434559 GCATATAAACTCGTTTAGTGGAAAATC 57.565 33.333 8.09 0.00 38.88 2.17
6047 7069 9.632969 CATATAAACTCGTTTAGTGGAAAATCG 57.367 33.333 8.09 0.00 38.88 3.34
6048 7070 7.894376 ATAAACTCGTTTAGTGGAAAATCGA 57.106 32.000 8.09 0.00 38.88 3.59
6049 7071 5.840940 AACTCGTTTAGTGGAAAATCGAG 57.159 39.130 12.31 12.31 41.02 4.04
6050 7072 5.130292 ACTCGTTTAGTGGAAAATCGAGA 57.870 39.130 18.04 0.00 39.54 4.04
6051 7073 5.535333 ACTCGTTTAGTGGAAAATCGAGAA 58.465 37.500 18.04 0.00 39.54 2.87
6052 7074 5.404667 ACTCGTTTAGTGGAAAATCGAGAAC 59.595 40.000 18.04 0.00 39.54 3.01
6053 7075 5.535333 TCGTTTAGTGGAAAATCGAGAACT 58.465 37.500 0.00 0.00 0.00 3.01
6054 7076 5.987347 TCGTTTAGTGGAAAATCGAGAACTT 59.013 36.000 0.00 0.00 0.00 2.66
6055 7077 6.480981 TCGTTTAGTGGAAAATCGAGAACTTT 59.519 34.615 0.00 0.00 0.00 2.66
6056 7078 7.011669 TCGTTTAGTGGAAAATCGAGAACTTTT 59.988 33.333 0.00 0.00 0.00 2.27
6057 7079 7.111593 CGTTTAGTGGAAAATCGAGAACTTTTG 59.888 37.037 0.00 0.00 0.00 2.44
6058 7080 7.562454 TTAGTGGAAAATCGAGAACTTTTGT 57.438 32.000 0.00 0.00 0.00 2.83
6059 7081 6.061231 AGTGGAAAATCGAGAACTTTTGTC 57.939 37.500 0.00 0.00 0.00 3.18
6060 7082 5.823045 AGTGGAAAATCGAGAACTTTTGTCT 59.177 36.000 0.00 0.00 0.00 3.41
6061 7083 6.017852 AGTGGAAAATCGAGAACTTTTGTCTC 60.018 38.462 0.00 0.00 0.00 3.36
6062 7084 5.820423 TGGAAAATCGAGAACTTTTGTCTCA 59.180 36.000 0.00 0.00 31.51 3.27
6063 7085 6.136743 GGAAAATCGAGAACTTTTGTCTCAC 58.863 40.000 0.00 0.00 31.51 3.51
6064 7086 6.238374 GGAAAATCGAGAACTTTTGTCTCACA 60.238 38.462 0.00 0.00 31.51 3.58
6065 7087 6.867662 AAATCGAGAACTTTTGTCTCACAT 57.132 33.333 0.00 0.00 31.51 3.21
6066 7088 5.852738 ATCGAGAACTTTTGTCTCACATG 57.147 39.130 0.00 0.00 31.51 3.21
6067 7089 3.494626 TCGAGAACTTTTGTCTCACATGC 59.505 43.478 0.00 0.00 31.51 4.06
6068 7090 3.248363 CGAGAACTTTTGTCTCACATGCA 59.752 43.478 0.00 0.00 31.51 3.96
6069 7091 4.260743 CGAGAACTTTTGTCTCACATGCAA 60.261 41.667 0.00 0.00 31.51 4.08
6070 7092 5.179045 AGAACTTTTGTCTCACATGCAAG 57.821 39.130 0.00 0.00 0.00 4.01
6071 7093 4.883585 AGAACTTTTGTCTCACATGCAAGA 59.116 37.500 0.00 0.00 0.00 3.02
6072 7094 5.357878 AGAACTTTTGTCTCACATGCAAGAA 59.642 36.000 0.00 0.00 0.00 2.52
6073 7095 5.581126 ACTTTTGTCTCACATGCAAGAAA 57.419 34.783 0.00 0.00 0.00 2.52
6074 7096 5.585390 ACTTTTGTCTCACATGCAAGAAAG 58.415 37.500 0.00 0.03 29.59 2.62
6075 7097 4.572985 TTTGTCTCACATGCAAGAAAGG 57.427 40.909 0.00 0.00 0.00 3.11
6076 7098 3.490439 TGTCTCACATGCAAGAAAGGA 57.510 42.857 0.00 0.00 0.00 3.36
6077 7099 3.819368 TGTCTCACATGCAAGAAAGGAA 58.181 40.909 0.00 0.00 0.00 3.36
6078 7100 4.206375 TGTCTCACATGCAAGAAAGGAAA 58.794 39.130 0.00 0.00 0.00 3.13
6079 7101 4.644234 TGTCTCACATGCAAGAAAGGAAAA 59.356 37.500 0.00 0.00 0.00 2.29
6080 7102 5.126869 TGTCTCACATGCAAGAAAGGAAAAA 59.873 36.000 0.00 0.00 0.00 1.94
6081 7103 6.183360 TGTCTCACATGCAAGAAAGGAAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
6082 7104 6.703165 GTCTCACATGCAAGAAAGGAAAAATT 59.297 34.615 0.00 0.00 0.00 1.82
6083 7105 7.225341 GTCTCACATGCAAGAAAGGAAAAATTT 59.775 33.333 0.00 0.00 0.00 1.82
6084 7106 8.420222 TCTCACATGCAAGAAAGGAAAAATTTA 58.580 29.630 0.00 0.00 0.00 1.40
6085 7107 8.592105 TCACATGCAAGAAAGGAAAAATTTAG 57.408 30.769 0.00 0.00 0.00 1.85
6086 7108 8.203485 TCACATGCAAGAAAGGAAAAATTTAGT 58.797 29.630 0.00 0.00 0.00 2.24
6087 7109 8.277713 CACATGCAAGAAAGGAAAAATTTAGTG 58.722 33.333 0.00 0.00 0.00 2.74
6088 7110 7.986889 ACATGCAAGAAAGGAAAAATTTAGTGT 59.013 29.630 0.00 0.00 0.00 3.55
6089 7111 8.829612 CATGCAAGAAAGGAAAAATTTAGTGTT 58.170 29.630 0.00 0.00 0.00 3.32
6091 7113 9.877178 TGCAAGAAAGGAAAAATTTAGTGTTAA 57.123 25.926 0.00 0.00 0.00 2.01
6114 7136 5.796424 AAAAGGCTTTTCATGAGACATGT 57.204 34.783 19.14 0.00 0.00 3.21
6115 7137 5.796424 AAAGGCTTTTCATGAGACATGTT 57.204 34.783 6.68 0.00 0.00 2.71
6116 7138 5.796424 AAGGCTTTTCATGAGACATGTTT 57.204 34.783 0.00 0.00 0.00 2.83
6117 7139 5.796424 AGGCTTTTCATGAGACATGTTTT 57.204 34.783 0.00 0.00 0.00 2.43
6118 7140 6.165700 AGGCTTTTCATGAGACATGTTTTT 57.834 33.333 0.00 0.00 0.00 1.94
6150 7172 7.780008 TTACATAAGGTGTATGAAATGTCGG 57.220 36.000 0.50 0.00 42.63 4.79
6151 7173 5.123227 ACATAAGGTGTATGAAATGTCGGG 58.877 41.667 0.50 0.00 39.91 5.14
6152 7174 3.713826 AAGGTGTATGAAATGTCGGGT 57.286 42.857 0.00 0.00 0.00 5.28
6153 7175 3.713826 AGGTGTATGAAATGTCGGGTT 57.286 42.857 0.00 0.00 0.00 4.11
6154 7176 4.028993 AGGTGTATGAAATGTCGGGTTT 57.971 40.909 0.00 0.00 0.00 3.27
6155 7177 4.403734 AGGTGTATGAAATGTCGGGTTTT 58.596 39.130 0.00 0.00 0.00 2.43
6156 7178 4.457949 AGGTGTATGAAATGTCGGGTTTTC 59.542 41.667 0.00 0.00 33.44 2.29
6157 7179 4.216687 GGTGTATGAAATGTCGGGTTTTCA 59.783 41.667 9.06 9.06 43.70 2.69
6158 7180 5.151389 GTGTATGAAATGTCGGGTTTTCAC 58.849 41.667 8.89 0.00 42.72 3.18
6159 7181 3.934457 ATGAAATGTCGGGTTTTCACC 57.066 42.857 8.89 0.00 42.72 4.02
6168 7190 1.847818 GGGTTTTCACCGAAACTTGC 58.152 50.000 0.00 0.00 45.39 4.01
6169 7191 1.537348 GGGTTTTCACCGAAACTTGCC 60.537 52.381 0.00 0.00 45.39 4.52
6170 7192 1.472990 GTTTTCACCGAAACTTGCCG 58.527 50.000 0.00 0.00 36.75 5.69
6171 7193 1.096416 TTTTCACCGAAACTTGCCGT 58.904 45.000 0.00 0.00 30.83 5.68
6172 7194 0.378962 TTTCACCGAAACTTGCCGTG 59.621 50.000 0.00 0.00 0.00 4.94
6173 7195 0.745128 TTCACCGAAACTTGCCGTGT 60.745 50.000 0.00 0.00 0.00 4.49
6174 7196 1.010125 CACCGAAACTTGCCGTGTG 60.010 57.895 0.00 0.00 0.00 3.82
6175 7197 1.450669 ACCGAAACTTGCCGTGTGT 60.451 52.632 0.00 0.00 0.00 3.72
6176 7198 0.179078 ACCGAAACTTGCCGTGTGTA 60.179 50.000 0.00 0.00 0.00 2.90
6177 7199 0.938713 CCGAAACTTGCCGTGTGTAA 59.061 50.000 0.00 0.00 0.00 2.41
6178 7200 1.331138 CCGAAACTTGCCGTGTGTAAA 59.669 47.619 0.00 0.00 0.00 2.01
6179 7201 2.031508 CCGAAACTTGCCGTGTGTAAAT 60.032 45.455 0.00 0.00 0.00 1.40
6180 7202 3.186817 CCGAAACTTGCCGTGTGTAAATA 59.813 43.478 0.00 0.00 0.00 1.40
6181 7203 4.145997 CGAAACTTGCCGTGTGTAAATAC 58.854 43.478 0.00 0.00 0.00 1.89
6182 7204 4.318903 CGAAACTTGCCGTGTGTAAATACA 60.319 41.667 0.00 0.00 0.00 2.29
6183 7205 5.502153 AAACTTGCCGTGTGTAAATACAA 57.498 34.783 0.00 0.00 38.04 2.41
6184 7206 5.699097 AACTTGCCGTGTGTAAATACAAT 57.301 34.783 0.00 0.00 38.04 2.71
6185 7207 5.041951 ACTTGCCGTGTGTAAATACAATG 57.958 39.130 0.00 0.00 38.04 2.82
6186 7208 4.517453 ACTTGCCGTGTGTAAATACAATGT 59.483 37.500 0.00 0.00 38.04 2.71
6187 7209 5.009210 ACTTGCCGTGTGTAAATACAATGTT 59.991 36.000 0.00 0.00 38.04 2.71
6188 7210 4.788690 TGCCGTGTGTAAATACAATGTTG 58.211 39.130 0.00 0.00 38.04 3.33
6189 7211 4.515567 TGCCGTGTGTAAATACAATGTTGA 59.484 37.500 0.00 0.00 38.04 3.18
6190 7212 5.086058 GCCGTGTGTAAATACAATGTTGAG 58.914 41.667 0.00 0.00 38.04 3.02
6191 7213 5.106869 GCCGTGTGTAAATACAATGTTGAGA 60.107 40.000 0.00 0.00 38.04 3.27
6192 7214 6.403200 GCCGTGTGTAAATACAATGTTGAGAT 60.403 38.462 0.00 0.00 38.04 2.75
6193 7215 6.960992 CCGTGTGTAAATACAATGTTGAGATG 59.039 38.462 0.00 0.00 38.04 2.90
6194 7216 7.360861 CCGTGTGTAAATACAATGTTGAGATGT 60.361 37.037 0.00 0.00 38.04 3.06
6195 7217 7.478355 CGTGTGTAAATACAATGTTGAGATGTG 59.522 37.037 0.00 0.00 38.04 3.21
6196 7218 7.271223 GTGTGTAAATACAATGTTGAGATGTGC 59.729 37.037 0.00 0.00 38.04 4.57
6197 7219 7.040823 TGTGTAAATACAATGTTGAGATGTGCA 60.041 33.333 0.00 0.00 38.04 4.57
6198 7220 7.271223 GTGTAAATACAATGTTGAGATGTGCAC 59.729 37.037 10.75 10.75 38.04 4.57
6199 7221 2.975410 ACAATGTTGAGATGTGCACG 57.025 45.000 13.13 0.00 0.00 5.34
6200 7222 2.221169 ACAATGTTGAGATGTGCACGT 58.779 42.857 12.38 12.38 0.00 4.49
6201 7223 2.224079 ACAATGTTGAGATGTGCACGTC 59.776 45.455 28.14 28.14 0.00 4.34
6202 7224 2.168326 ATGTTGAGATGTGCACGTCA 57.832 45.000 34.33 22.99 34.41 4.35
6203 7225 1.946745 TGTTGAGATGTGCACGTCAA 58.053 45.000 34.33 26.55 34.41 3.18
6204 7226 2.284190 TGTTGAGATGTGCACGTCAAA 58.716 42.857 34.33 25.82 34.41 2.69
6205 7227 2.877786 TGTTGAGATGTGCACGTCAAAT 59.122 40.909 34.33 18.60 34.41 2.32
6206 7228 3.314913 TGTTGAGATGTGCACGTCAAATT 59.685 39.130 34.33 18.26 34.41 1.82
6207 7229 4.202000 TGTTGAGATGTGCACGTCAAATTT 60.202 37.500 34.33 17.90 34.41 1.82
6208 7230 3.887741 TGAGATGTGCACGTCAAATTTG 58.112 40.909 34.33 12.15 34.41 2.32
6209 7231 3.314913 TGAGATGTGCACGTCAAATTTGT 59.685 39.130 34.33 16.54 34.41 2.83
6210 7232 3.631144 AGATGTGCACGTCAAATTTGTG 58.369 40.909 34.33 13.45 34.41 3.33
6211 7233 2.929531 TGTGCACGTCAAATTTGTGT 57.070 40.000 17.47 14.05 36.04 3.72
6212 7234 3.223423 TGTGCACGTCAAATTTGTGTT 57.777 38.095 17.47 0.71 36.04 3.32
6213 7235 3.175152 TGTGCACGTCAAATTTGTGTTC 58.825 40.909 17.47 12.09 36.04 3.18
6214 7236 2.213131 GTGCACGTCAAATTTGTGTTCG 59.787 45.455 17.47 17.78 36.04 3.95
6215 7237 1.778591 GCACGTCAAATTTGTGTTCGG 59.221 47.619 17.47 12.13 36.04 4.30
6216 7238 2.539953 GCACGTCAAATTTGTGTTCGGA 60.540 45.455 17.47 0.00 36.04 4.55
6217 7239 3.851838 GCACGTCAAATTTGTGTTCGGAT 60.852 43.478 17.47 2.77 36.04 4.18
6218 7240 4.286910 CACGTCAAATTTGTGTTCGGATT 58.713 39.130 17.47 2.20 0.00 3.01
6219 7241 4.737765 CACGTCAAATTTGTGTTCGGATTT 59.262 37.500 17.47 1.91 0.00 2.17
6220 7242 5.231147 CACGTCAAATTTGTGTTCGGATTTT 59.769 36.000 17.47 1.62 0.00 1.82
6221 7243 5.808030 ACGTCAAATTTGTGTTCGGATTTTT 59.192 32.000 17.47 1.05 0.00 1.94
6256 7278 8.999431 TGAAATATATTTTTCGATGGTAGGAGC 58.001 33.333 11.92 0.00 38.23 4.70
6257 7279 8.918202 AAATATATTTTTCGATGGTAGGAGCA 57.082 30.769 4.81 0.00 0.00 4.26
6258 7280 9.520515 AAATATATTTTTCGATGGTAGGAGCAT 57.479 29.630 4.81 0.00 39.30 3.79
6261 7283 6.808008 ATTTTTCGATGGTAGGAGCATATG 57.192 37.500 0.00 0.00 36.31 1.78
6262 7284 3.319137 TTCGATGGTAGGAGCATATGC 57.681 47.619 20.36 20.36 36.31 3.14
6274 7296 3.425122 CATATGCTCCCATGTGCCA 57.575 52.632 0.00 0.00 34.49 4.92
6275 7297 1.694844 CATATGCTCCCATGTGCCAA 58.305 50.000 0.00 0.00 34.49 4.52
6276 7298 2.033372 CATATGCTCCCATGTGCCAAA 58.967 47.619 0.00 0.00 34.49 3.28
6277 7299 1.766494 TATGCTCCCATGTGCCAAAG 58.234 50.000 0.00 0.00 32.85 2.77
6278 7300 0.251922 ATGCTCCCATGTGCCAAAGT 60.252 50.000 0.00 0.00 0.00 2.66
6279 7301 0.403655 TGCTCCCATGTGCCAAAGTA 59.596 50.000 0.00 0.00 0.00 2.24
6280 7302 1.202989 TGCTCCCATGTGCCAAAGTAA 60.203 47.619 0.00 0.00 0.00 2.24
6281 7303 1.892474 GCTCCCATGTGCCAAAGTAAA 59.108 47.619 0.00 0.00 0.00 2.01
6282 7304 2.497273 GCTCCCATGTGCCAAAGTAAAT 59.503 45.455 0.00 0.00 0.00 1.40
6283 7305 3.055891 GCTCCCATGTGCCAAAGTAAATT 60.056 43.478 0.00 0.00 0.00 1.82
6284 7306 4.563374 GCTCCCATGTGCCAAAGTAAATTT 60.563 41.667 0.00 0.00 0.00 1.82
6285 7307 5.146010 TCCCATGTGCCAAAGTAAATTTC 57.854 39.130 0.00 0.00 0.00 2.17
6286 7308 3.925913 CCCATGTGCCAAAGTAAATTTCG 59.074 43.478 0.00 0.00 0.00 3.46
6287 7309 4.555262 CCATGTGCCAAAGTAAATTTCGT 58.445 39.130 0.00 0.00 0.00 3.85
6288 7310 4.987912 CCATGTGCCAAAGTAAATTTCGTT 59.012 37.500 0.00 0.00 0.00 3.85
6289 7311 5.465056 CCATGTGCCAAAGTAAATTTCGTTT 59.535 36.000 0.00 0.00 0.00 3.60
6290 7312 6.346518 CCATGTGCCAAAGTAAATTTCGTTTC 60.347 38.462 0.00 0.00 0.00 2.78
6291 7313 5.897050 TGTGCCAAAGTAAATTTCGTTTCT 58.103 33.333 0.00 0.00 0.00 2.52
6292 7314 6.334202 TGTGCCAAAGTAAATTTCGTTTCTT 58.666 32.000 0.00 0.00 0.00 2.52
6293 7315 6.254589 TGTGCCAAAGTAAATTTCGTTTCTTG 59.745 34.615 0.00 0.00 0.00 3.02
6294 7316 6.254804 GTGCCAAAGTAAATTTCGTTTCTTGT 59.745 34.615 0.00 0.00 0.00 3.16
6295 7317 6.254589 TGCCAAAGTAAATTTCGTTTCTTGTG 59.745 34.615 0.00 0.00 0.00 3.33
6296 7318 6.636443 CCAAAGTAAATTTCGTTTCTTGTGC 58.364 36.000 0.00 0.00 0.00 4.57
6297 7319 6.254589 CCAAAGTAAATTTCGTTTCTTGTGCA 59.745 34.615 0.00 0.00 0.00 4.57
6298 7320 6.806120 AAGTAAATTTCGTTTCTTGTGCAC 57.194 33.333 10.75 10.75 0.00 4.57
6299 7321 6.131544 AGTAAATTTCGTTTCTTGTGCACT 57.868 33.333 19.41 0.00 0.00 4.40
6300 7322 7.254227 AGTAAATTTCGTTTCTTGTGCACTA 57.746 32.000 19.41 9.94 0.00 2.74
6301 7323 7.871853 AGTAAATTTCGTTTCTTGTGCACTAT 58.128 30.769 19.41 0.00 0.00 2.12
6302 7324 6.991485 AAATTTCGTTTCTTGTGCACTATG 57.009 33.333 19.41 8.11 0.00 2.23
6303 7325 3.536158 TTCGTTTCTTGTGCACTATGC 57.464 42.857 19.41 2.77 45.29 3.14
6304 7326 2.766313 TCGTTTCTTGTGCACTATGCT 58.234 42.857 19.41 0.00 45.31 3.79
6305 7327 3.920446 TCGTTTCTTGTGCACTATGCTA 58.080 40.909 19.41 0.00 45.31 3.49
6306 7328 3.926527 TCGTTTCTTGTGCACTATGCTAG 59.073 43.478 19.41 5.29 45.31 3.42
6307 7329 3.679980 CGTTTCTTGTGCACTATGCTAGT 59.320 43.478 19.41 0.00 45.31 2.57
6308 7330 4.862574 CGTTTCTTGTGCACTATGCTAGTA 59.137 41.667 19.41 0.00 45.31 1.82
6309 7331 5.004821 CGTTTCTTGTGCACTATGCTAGTAG 59.995 44.000 19.41 0.00 45.31 2.57
6310 7332 5.661056 TTCTTGTGCACTATGCTAGTAGT 57.339 39.130 19.41 0.00 45.31 2.73
6311 7333 6.769134 TTCTTGTGCACTATGCTAGTAGTA 57.231 37.500 19.41 0.00 45.31 1.82
6312 7334 6.378710 TCTTGTGCACTATGCTAGTAGTAG 57.621 41.667 19.41 0.00 45.31 2.57
6313 7335 5.886474 TCTTGTGCACTATGCTAGTAGTAGT 59.114 40.000 19.41 0.00 45.31 2.73
6314 7336 6.377429 TCTTGTGCACTATGCTAGTAGTAGTT 59.623 38.462 19.41 0.00 45.31 2.24
6315 7337 6.525578 TGTGCACTATGCTAGTAGTAGTTT 57.474 37.500 19.41 0.00 45.31 2.66
6316 7338 7.634671 TGTGCACTATGCTAGTAGTAGTTTA 57.365 36.000 19.41 0.00 45.31 2.01
6317 7339 7.478322 TGTGCACTATGCTAGTAGTAGTTTAC 58.522 38.462 19.41 2.84 45.31 2.01
6318 7340 7.338703 TGTGCACTATGCTAGTAGTAGTTTACT 59.661 37.037 19.41 0.00 45.31 2.24
6319 7341 7.856894 GTGCACTATGCTAGTAGTAGTTTACTC 59.143 40.741 10.32 0.00 45.31 2.59
6320 7342 7.013083 TGCACTATGCTAGTAGTAGTTTACTCC 59.987 40.741 6.47 0.00 45.31 3.85
6321 7343 7.013083 GCACTATGCTAGTAGTAGTTTACTCCA 59.987 40.741 6.47 0.00 40.96 3.86
6322 7344 9.069082 CACTATGCTAGTAGTAGTTTACTCCAT 57.931 37.037 6.47 2.54 40.14 3.41
6323 7345 9.287373 ACTATGCTAGTAGTAGTTTACTCCATC 57.713 37.037 6.47 0.00 40.14 3.51
6324 7346 9.286170 CTATGCTAGTAGTAGTTTACTCCATCA 57.714 37.037 6.47 0.00 40.14 3.07
6325 7347 8.713708 ATGCTAGTAGTAGTTTACTCCATCAT 57.286 34.615 6.47 0.00 40.14 2.45
6326 7348 7.941919 TGCTAGTAGTAGTTTACTCCATCATG 58.058 38.462 6.47 0.00 40.14 3.07
6327 7349 7.560262 TGCTAGTAGTAGTTTACTCCATCATGT 59.440 37.037 6.47 0.00 40.14 3.21
6328 7350 8.414778 GCTAGTAGTAGTTTACTCCATCATGTT 58.585 37.037 6.47 0.00 40.14 2.71
6386 7408 9.290988 TGGCAACTTTATTTATACAAACAGAGA 57.709 29.630 0.00 0.00 37.61 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.978610 AGGGAAGTACTACTACAGGTGG 58.021 50.000 0.00 0.00 0.00 4.61
84 101 6.520913 GCCATCTTTAGACCTATCCCTTTAGG 60.521 46.154 0.00 0.00 43.78 2.69
86 103 5.908831 TGCCATCTTTAGACCTATCCCTTTA 59.091 40.000 0.00 0.00 0.00 1.85
92 111 3.060602 GCGTGCCATCTTTAGACCTATC 58.939 50.000 0.00 0.00 0.00 2.08
93 112 2.434336 TGCGTGCCATCTTTAGACCTAT 59.566 45.455 0.00 0.00 0.00 2.57
145 164 5.186021 AGGATTACCCGATATACTCAAGCAG 59.814 44.000 0.00 0.00 40.87 4.24
182 201 1.531149 CACAGTGCTTACTTTGGTCCG 59.469 52.381 0.00 0.00 0.00 4.79
201 220 1.001393 GGGGCTTTTCCGATCACCA 60.001 57.895 0.00 0.00 34.94 4.17
226 245 3.624326 TGAATGTGAAAAACTCGCTGG 57.376 42.857 0.00 0.00 35.43 4.85
266 285 6.277605 TCACGTTAGATTCTTGTTGAAGACA 58.722 36.000 0.00 0.00 37.97 3.41
267 286 6.764877 TCACGTTAGATTCTTGTTGAAGAC 57.235 37.500 0.00 0.00 37.97 3.01
307 382 4.585162 ACCAAACACGGTCCAAATATTTCA 59.415 37.500 0.00 0.00 32.11 2.69
308 383 5.128992 ACCAAACACGGTCCAAATATTTC 57.871 39.130 0.00 0.00 32.11 2.17
331 406 5.125900 TGATCAATTCAAAATCCAGCGTCAT 59.874 36.000 0.00 0.00 0.00 3.06
337 412 8.942338 AACATGATGATCAATTCAAAATCCAG 57.058 30.769 0.00 0.00 38.03 3.86
526 614 3.714280 GGGGGCAATAATGGGTGTAATTT 59.286 43.478 0.00 0.00 0.00 1.82
532 620 1.122227 CTTGGGGGCAATAATGGGTG 58.878 55.000 0.00 0.00 0.00 4.61
589 679 1.135803 CCTGGCATTTACGTGTTTCCG 60.136 52.381 0.00 0.00 0.00 4.30
712 807 0.755327 GAGAGGGAGAGGTCAGAGGC 60.755 65.000 0.00 0.00 0.00 4.70
736 831 4.529731 GAGGGGCAATGGGGGAGC 62.530 72.222 0.00 0.00 0.00 4.70
737 832 4.195334 CGAGGGGCAATGGGGGAG 62.195 72.222 0.00 0.00 0.00 4.30
742 837 4.883354 GAGGGCGAGGGGCAATGG 62.883 72.222 0.00 0.00 46.16 3.16
896 1162 1.714899 AAATCGCCCCAGAAATCGCG 61.715 55.000 0.00 0.00 45.76 5.87
906 1172 1.818363 GTTCCGGAGAAATCGCCCC 60.818 63.158 3.34 0.00 32.58 5.80
987 1254 1.456196 CGCTCATCTCCTCCGCCTTA 61.456 60.000 0.00 0.00 0.00 2.69
988 1255 2.790791 CGCTCATCTCCTCCGCCTT 61.791 63.158 0.00 0.00 0.00 4.35
989 1256 3.222855 CGCTCATCTCCTCCGCCT 61.223 66.667 0.00 0.00 0.00 5.52
1059 1326 1.445582 GTCGTAGGCCTTGGACACG 60.446 63.158 23.66 20.77 0.00 4.49
1213 1480 3.997021 ACACTTAGCAAATTCGAGACAGG 59.003 43.478 0.00 0.00 0.00 4.00
1215 1482 4.627058 TGACACTTAGCAAATTCGAGACA 58.373 39.130 0.00 0.00 0.00 3.41
1226 1493 3.254903 ACACGACAGTATGACACTTAGCA 59.745 43.478 0.00 0.00 39.69 3.49
1245 1512 6.520792 ACACTAACTGTTCAATCGTTACAC 57.479 37.500 0.00 0.00 0.00 2.90
1254 1521 3.181501 GCAGCACAACACTAACTGTTCAA 60.182 43.478 0.00 0.00 41.50 2.69
1260 1527 1.800586 CATCGCAGCACAACACTAACT 59.199 47.619 0.00 0.00 0.00 2.24
1268 1535 1.750018 CCATCCCATCGCAGCACAA 60.750 57.895 0.00 0.00 0.00 3.33
1293 1560 0.168128 CGAAACCACTCAATTCGCCC 59.832 55.000 0.00 0.00 39.36 6.13
1311 1578 4.625972 AACAGCGAATTAATTAACCCCG 57.374 40.909 0.00 5.81 0.00 5.73
1314 1581 6.144724 TGCACAAAACAGCGAATTAATTAACC 59.855 34.615 0.00 0.00 0.00 2.85
1315 1582 7.099666 TGCACAAAACAGCGAATTAATTAAC 57.900 32.000 0.00 0.00 0.00 2.01
1316 1583 7.881643 ATGCACAAAACAGCGAATTAATTAA 57.118 28.000 0.00 0.00 0.00 1.40
1318 1585 7.010367 CCATATGCACAAAACAGCGAATTAATT 59.990 33.333 0.00 0.00 0.00 1.40
1319 1586 6.476380 CCATATGCACAAAACAGCGAATTAAT 59.524 34.615 0.00 0.00 0.00 1.40
1321 1588 5.105957 ACCATATGCACAAAACAGCGAATTA 60.106 36.000 0.00 0.00 0.00 1.40
1322 1589 4.175516 CCATATGCACAAAACAGCGAATT 58.824 39.130 0.00 0.00 0.00 2.17
1323 1590 3.193267 ACCATATGCACAAAACAGCGAAT 59.807 39.130 0.00 0.00 0.00 3.34
1324 1591 2.556189 ACCATATGCACAAAACAGCGAA 59.444 40.909 0.00 0.00 0.00 4.70
1325 1592 2.158559 ACCATATGCACAAAACAGCGA 58.841 42.857 0.00 0.00 0.00 4.93
1326 1593 2.634982 ACCATATGCACAAAACAGCG 57.365 45.000 0.00 0.00 0.00 5.18
1327 1594 3.859386 GCTAACCATATGCACAAAACAGC 59.141 43.478 0.00 0.00 0.00 4.40
1328 1595 5.097529 CAGCTAACCATATGCACAAAACAG 58.902 41.667 0.00 0.00 0.00 3.16
1351 1813 0.943359 CTAGCATCAGCCGCTACTGC 60.943 60.000 15.29 15.29 43.56 4.40
1357 1819 1.468520 TGAAAAACTAGCATCAGCCGC 59.531 47.619 0.00 0.00 43.56 6.53
1358 1820 2.744202 ACTGAAAAACTAGCATCAGCCG 59.256 45.455 12.13 0.00 42.34 5.52
1359 1821 5.220931 CCATACTGAAAAACTAGCATCAGCC 60.221 44.000 12.13 0.00 42.34 4.85
1403 1865 9.347934 CTCTAGTAATACAAAACTGACACTGAG 57.652 37.037 0.00 0.00 0.00 3.35
1413 1875 9.488124 CGTCTAGTCACTCTAGTAATACAAAAC 57.512 37.037 0.00 0.00 44.59 2.43
1418 1880 5.107530 CGCCGTCTAGTCACTCTAGTAATAC 60.108 48.000 0.00 0.00 44.59 1.89
1420 1882 3.808726 CGCCGTCTAGTCACTCTAGTAAT 59.191 47.826 0.00 0.00 44.59 1.89
1431 1893 1.883084 CAATGGGCGCCGTCTAGTC 60.883 63.158 22.54 4.79 0.00 2.59
1441 1903 1.213537 CCTTCTGCAACAATGGGCG 59.786 57.895 0.00 0.00 0.00 6.13
1460 1922 8.352942 CAGTACTTTTTCATCTATTAATGCCCC 58.647 37.037 0.00 0.00 0.00 5.80
1480 1942 5.239525 GGAAGCACTTCAAAACATCAGTACT 59.760 40.000 12.21 0.00 41.20 2.73
1489 1951 4.301628 CATCCAAGGAAGCACTTCAAAAC 58.698 43.478 12.21 0.00 41.20 2.43
1495 1957 1.353694 AGAGCATCCAAGGAAGCACTT 59.646 47.619 17.45 0.00 40.78 3.16
1526 1988 6.127925 TGTTTCTAGGCAAATGCTAACATCAG 60.128 38.462 5.25 0.00 41.70 2.90
1542 2004 0.320771 AGCTGGCACGTGTTTCTAGG 60.321 55.000 18.38 2.34 0.00 3.02
1592 2054 8.494347 GCGATACGAGTTATAGAAAAGTCTAGA 58.506 37.037 0.00 0.00 39.75 2.43
1593 2055 8.497554 AGCGATACGAGTTATAGAAAAGTCTAG 58.502 37.037 0.00 0.00 39.75 2.43
1594 2056 8.281194 CAGCGATACGAGTTATAGAAAAGTCTA 58.719 37.037 0.00 0.00 40.68 2.59
1682 2144 3.054875 TGAAGATGCTCAGTTGGCTACAT 60.055 43.478 1.24 0.00 0.00 2.29
1700 2162 9.793252 CATAAGTTAATGAAAACCTGGATGAAG 57.207 33.333 0.00 0.00 0.00 3.02
1710 2172 8.770438 TGAAATGCCCATAAGTTAATGAAAAC 57.230 30.769 0.00 0.00 0.00 2.43
1746 2208 5.614308 AGAAATGTGTCAACAGACATGAGA 58.386 37.500 0.00 0.00 43.56 3.27
1909 2371 0.462047 ACGGAACTGGCGATGATTCC 60.462 55.000 0.00 0.00 37.79 3.01
1953 2415 7.782049 ACTAAAGAATATGGACATGAAGACGA 58.218 34.615 0.00 0.00 0.00 4.20
2013 2475 2.368875 ACAGAACACCTAACCTCACAGG 59.631 50.000 0.00 0.00 42.49 4.00
2049 2511 1.979855 TTCAGCTAACTTGGCAGCAA 58.020 45.000 0.00 0.00 40.36 3.91
2131 2593 3.134623 AGTCAGTCACAGAAATCACCACA 59.865 43.478 0.00 0.00 0.00 4.17
2134 2596 3.330267 GGAGTCAGTCACAGAAATCACC 58.670 50.000 0.00 0.00 0.00 4.02
2249 2711 5.948162 AGGAATTGACAAGATGTTGCATAGT 59.052 36.000 1.83 0.00 37.14 2.12
2436 2899 9.431887 TCACAACAAAAATATAGGTAGACTGAC 57.568 33.333 0.00 0.00 0.00 3.51
2532 2995 1.531149 CCGCGAGAAGAACATTGTTGT 59.469 47.619 8.23 0.00 37.82 3.32
2626 3089 8.644374 AAAGGTTACTATGCCAAGTCAAATTA 57.356 30.769 0.00 0.00 0.00 1.40
2631 3094 5.876357 AGAAAAGGTTACTATGCCAAGTCA 58.124 37.500 0.00 0.00 0.00 3.41
2684 3147 2.325583 TAAATGTTGGGCTCCGCTAG 57.674 50.000 0.00 0.00 0.00 3.42
2727 3190 8.141835 ACAATTCTGTTGGTTAGAAATTTTGC 57.858 30.769 0.00 0.00 37.67 3.68
2752 3215 4.760530 ATAGCTGCATAACACAGAGGAA 57.239 40.909 1.02 0.00 37.32 3.36
2784 3247 0.592637 CCAGCATTTTCACTGTCGCA 59.407 50.000 0.00 0.00 31.76 5.10
2920 3405 6.021596 GGTTGTGTATCTTGCAAGTAAATCG 58.978 40.000 25.19 0.00 0.00 3.34
2930 3415 5.453567 AAAAAGGAGGTTGTGTATCTTGC 57.546 39.130 0.00 0.00 0.00 4.01
2968 3453 6.154706 TCCAAAACTGAGATTACTAGGAGGTC 59.845 42.308 0.00 0.00 0.00 3.85
3007 3492 3.455543 AGGCCCCAAATGAATGTTAATGG 59.544 43.478 0.00 0.00 0.00 3.16
3390 4297 9.691362 GAGACAAATTAATTAAAAACTGAGCCA 57.309 29.630 1.21 0.00 0.00 4.75
3412 4319 9.185192 CAAATTGTTTGAAAGGAAGTATGAGAC 57.815 33.333 0.00 0.00 43.26 3.36
3449 4356 1.826720 TCCCAAATTTCATCAGCAGGC 59.173 47.619 0.00 0.00 0.00 4.85
3455 4362 3.290710 GCTAGCCTCCCAAATTTCATCA 58.709 45.455 2.29 0.00 0.00 3.07
3647 4554 8.643324 ACAAGTTCTGGATCATATTAGGTAGAC 58.357 37.037 0.00 0.00 0.00 2.59
3743 4650 4.535781 CTCCATATTGTCCCCATGTGAAA 58.464 43.478 0.00 0.00 0.00 2.69
3775 4682 9.086336 ACACTTTGTTAACAACATTCAAATGAG 57.914 29.630 20.43 12.92 41.79 2.90
3816 4723 9.256228 ACATGTCACCTTAATTCTACTCTCTAA 57.744 33.333 0.00 0.00 0.00 2.10
3833 4740 0.874390 ACGCAATGTCACATGTCACC 59.126 50.000 0.00 0.00 0.00 4.02
3894 4801 6.205464 TCAGAGCCTTTTCATTGTAAACTGAG 59.795 38.462 0.00 0.00 0.00 3.35
4158 5065 7.027874 TGTACTCCAGAAAATTACCTTGGAT 57.972 36.000 0.00 0.00 0.00 3.41
4178 5085 9.155975 ACACTGTTTATCATGAAAGAGATGTAC 57.844 33.333 10.40 0.00 34.25 2.90
4180 5087 9.725019 TTACACTGTTTATCATGAAAGAGATGT 57.275 29.630 10.40 11.70 34.25 3.06
4181 5088 9.979270 GTTACACTGTTTATCATGAAAGAGATG 57.021 33.333 10.40 7.76 34.25 2.90
4182 5089 9.950496 AGTTACACTGTTTATCATGAAAGAGAT 57.050 29.630 10.40 2.63 34.25 2.75
4183 5090 9.778741 AAGTTACACTGTTTATCATGAAAGAGA 57.221 29.630 10.40 0.00 34.25 3.10
4188 5095 9.729023 CACAAAAGTTACACTGTTTATCATGAA 57.271 29.630 0.00 0.00 0.00 2.57
4189 5096 8.898761 ACACAAAAGTTACACTGTTTATCATGA 58.101 29.630 0.00 0.00 0.00 3.07
4190 5097 9.169468 GACACAAAAGTTACACTGTTTATCATG 57.831 33.333 0.00 0.00 0.00 3.07
4191 5098 8.349983 GGACACAAAAGTTACACTGTTTATCAT 58.650 33.333 0.00 0.00 0.00 2.45
4192 5099 7.554835 AGGACACAAAAGTTACACTGTTTATCA 59.445 33.333 0.00 0.00 0.00 2.15
4198 5105 6.433093 AGAAAAGGACACAAAAGTTACACTGT 59.567 34.615 0.00 0.00 0.00 3.55
4453 5375 6.992063 AGAGCATGTCAAACAATTACTAGG 57.008 37.500 0.00 0.00 0.00 3.02
4456 5378 6.882610 TCAAGAGCATGTCAAACAATTACT 57.117 33.333 0.00 0.00 0.00 2.24
4529 5534 2.360801 AGTTTTGGTGTGTACATGCCAC 59.639 45.455 17.47 12.30 0.00 5.01
4563 5568 8.723942 AAACTTCGATTAGTTAGATGCTGAAT 57.276 30.769 3.01 0.00 37.37 2.57
4590 5595 6.038382 TGTTTTGTGTACTCCGATTTTAAGCA 59.962 34.615 0.00 0.00 0.00 3.91
4609 5614 3.792956 GTGCTCATGTTCAGTGTGTTTTG 59.207 43.478 0.00 0.00 0.00 2.44
4613 5618 2.627515 AGTGCTCATGTTCAGTGTGT 57.372 45.000 0.00 0.00 0.00 3.72
4724 5729 5.618640 GCTGAATCTCACCACATTCACTTTC 60.619 44.000 0.00 0.00 34.71 2.62
4758 5764 8.746922 TTCTTCAAAATTGTATCTGCATTCAC 57.253 30.769 0.00 0.00 0.00 3.18
4964 5970 2.665165 ACTGCAACAAAGACCCATCAA 58.335 42.857 0.00 0.00 0.00 2.57
5075 6081 3.933332 GGTGCACCAAGTATCAACTAGTC 59.067 47.826 31.23 0.00 33.75 2.59
5156 6162 5.335897 GCATCAAGTTTTCATTGGCTACAGA 60.336 40.000 0.00 0.00 0.00 3.41
5330 6345 4.401022 CCTGTATGCACATATGGAATGGT 58.599 43.478 7.80 0.00 33.14 3.55
5411 6426 7.904205 TCGTTAAAAGAAGAGAAATACCTCCT 58.096 34.615 0.00 0.00 33.76 3.69
5432 6447 4.220163 GGCCCTATGCTAGTACTATTCGTT 59.780 45.833 2.33 0.00 40.92 3.85
5433 6448 3.762823 GGCCCTATGCTAGTACTATTCGT 59.237 47.826 2.33 3.05 40.92 3.85
5455 6473 0.524862 GTGCATGGTGGAGAGCAAAG 59.475 55.000 0.00 0.00 38.91 2.77
5457 6475 1.303561 GGTGCATGGTGGAGAGCAA 60.304 57.895 0.00 0.00 38.91 3.91
5482 6500 9.232473 AGACATGATGAATCCATTGATAAGATG 57.768 33.333 0.00 0.00 32.09 2.90
5503 6521 4.079970 TCAGAAGACAGACCGTTAGACAT 58.920 43.478 0.00 0.00 0.00 3.06
5572 6590 1.896465 CTCCCTGTCGAAAGGAAGAGT 59.104 52.381 24.10 0.00 40.02 3.24
5580 6600 1.205655 CTGCTCATCTCCCTGTCGAAA 59.794 52.381 0.00 0.00 0.00 3.46
5581 6601 0.820226 CTGCTCATCTCCCTGTCGAA 59.180 55.000 0.00 0.00 0.00 3.71
5601 6621 4.925786 GCGTTTGCGACATCTACG 57.074 55.556 0.00 0.00 41.33 3.51
5713 6733 3.501349 TGGGCATCTCTCTGATAGTACC 58.499 50.000 0.00 0.00 33.36 3.34
5718 6738 2.564504 CCGAATGGGCATCTCTCTGATA 59.435 50.000 0.00 0.00 33.36 2.15
5762 6784 5.130477 TCATTTGTTCCCCTCTACAGTATCC 59.870 44.000 0.00 0.00 0.00 2.59
5864 6886 6.188400 TGGGCAAAAACAAAAAGATGAAAC 57.812 33.333 0.00 0.00 0.00 2.78
5885 6907 2.568623 AGAAACTGCTACTGGGTTGG 57.431 50.000 0.00 0.00 0.00 3.77
5893 6915 4.162812 CACTCTCGAGAAGAAACTGCTAC 58.837 47.826 17.36 0.00 32.23 3.58
5900 6922 0.959553 ACGCCACTCTCGAGAAGAAA 59.040 50.000 17.36 0.00 32.23 2.52
5906 6928 1.714794 ATCAAAACGCCACTCTCGAG 58.285 50.000 5.93 5.93 0.00 4.04
5907 6929 3.520290 ATATCAAAACGCCACTCTCGA 57.480 42.857 0.00 0.00 0.00 4.04
5908 6930 4.360563 AGTATATCAAAACGCCACTCTCG 58.639 43.478 0.00 0.00 0.00 4.04
5909 6931 4.745620 GGAGTATATCAAAACGCCACTCTC 59.254 45.833 0.00 0.00 35.81 3.20
5910 6932 4.406003 AGGAGTATATCAAAACGCCACTCT 59.594 41.667 0.00 0.00 37.96 3.24
5911 6933 4.508124 CAGGAGTATATCAAAACGCCACTC 59.492 45.833 0.00 0.00 37.96 3.51
5912 6934 4.442706 CAGGAGTATATCAAAACGCCACT 58.557 43.478 0.00 0.00 37.96 4.00
5913 6935 3.560068 CCAGGAGTATATCAAAACGCCAC 59.440 47.826 0.00 0.00 37.96 5.01
5914 6936 3.452990 TCCAGGAGTATATCAAAACGCCA 59.547 43.478 0.00 0.00 37.96 5.69
5915 6937 4.067972 TCCAGGAGTATATCAAAACGCC 57.932 45.455 0.00 0.00 35.97 5.68
5916 6938 6.619801 AAATCCAGGAGTATATCAAAACGC 57.380 37.500 0.00 0.00 0.00 4.84
5926 6948 9.533831 AGAACACATTTTAAAATCCAGGAGTAT 57.466 29.630 10.53 0.00 0.00 2.12
5927 6949 8.934023 AGAACACATTTTAAAATCCAGGAGTA 57.066 30.769 10.53 0.00 0.00 2.59
5928 6950 7.839680 AGAACACATTTTAAAATCCAGGAGT 57.160 32.000 10.53 2.39 0.00 3.85
5930 6952 9.974980 GTTTAGAACACATTTTAAAATCCAGGA 57.025 29.630 10.53 0.00 29.04 3.86
5931 6953 9.757227 TGTTTAGAACACATTTTAAAATCCAGG 57.243 29.630 10.53 2.81 36.25 4.45
5970 6992 8.400184 AGAATCATCTTGTCAGAATTTTGTGA 57.600 30.769 0.00 0.00 29.15 3.58
5985 7007 4.742167 CGAGATGTACGCAAGAATCATCTT 59.258 41.667 7.28 0.00 46.91 2.40
5986 7008 4.036852 TCGAGATGTACGCAAGAATCATCT 59.963 41.667 5.80 5.80 45.90 2.90
5987 7009 4.290969 TCGAGATGTACGCAAGAATCATC 58.709 43.478 0.00 0.00 39.90 2.92
5988 7010 4.307443 TCGAGATGTACGCAAGAATCAT 57.693 40.909 0.00 0.00 43.62 2.45
5989 7011 3.775661 TCGAGATGTACGCAAGAATCA 57.224 42.857 0.00 0.00 43.62 2.57
5990 7012 6.804295 AGAATATCGAGATGTACGCAAGAATC 59.196 38.462 0.00 0.00 43.62 2.52
5991 7013 6.682746 AGAATATCGAGATGTACGCAAGAAT 58.317 36.000 0.00 0.00 43.62 2.40
5992 7014 6.073327 AGAATATCGAGATGTACGCAAGAA 57.927 37.500 0.00 0.00 43.62 2.52
5993 7015 5.690997 AGAATATCGAGATGTACGCAAGA 57.309 39.130 0.00 0.00 43.62 3.02
5995 7017 5.049886 ACGTAGAATATCGAGATGTACGCAA 60.050 40.000 24.23 0.00 32.46 4.85
5996 7018 4.450080 ACGTAGAATATCGAGATGTACGCA 59.550 41.667 24.23 2.21 32.46 5.24
5997 7019 4.782030 CACGTAGAATATCGAGATGTACGC 59.218 45.833 24.23 4.31 32.46 4.42
5998 7020 4.782030 GCACGTAGAATATCGAGATGTACG 59.218 45.833 23.34 23.34 34.98 3.67
5999 7021 5.686834 TGCACGTAGAATATCGAGATGTAC 58.313 41.667 0.00 0.00 0.00 2.90
6000 7022 5.934935 TGCACGTAGAATATCGAGATGTA 57.065 39.130 0.00 0.00 0.00 2.29
6001 7023 4.830826 TGCACGTAGAATATCGAGATGT 57.169 40.909 0.00 0.00 0.00 3.06
6002 7024 9.503427 TTTATATGCACGTAGAATATCGAGATG 57.497 33.333 0.00 0.00 0.00 2.90
6003 7025 9.504710 GTTTATATGCACGTAGAATATCGAGAT 57.495 33.333 0.00 0.00 0.00 2.75
6004 7026 8.727910 AGTTTATATGCACGTAGAATATCGAGA 58.272 33.333 0.00 0.00 0.00 4.04
6005 7027 8.897457 AGTTTATATGCACGTAGAATATCGAG 57.103 34.615 0.00 0.00 0.00 4.04
6006 7028 7.691050 CGAGTTTATATGCACGTAGAATATCGA 59.309 37.037 0.00 0.00 0.00 3.59
6007 7029 7.480855 ACGAGTTTATATGCACGTAGAATATCG 59.519 37.037 0.00 0.00 30.91 2.92
6008 7030 8.670804 ACGAGTTTATATGCACGTAGAATATC 57.329 34.615 0.00 0.00 30.91 1.63
6009 7031 9.472361 AAACGAGTTTATATGCACGTAGAATAT 57.528 29.630 0.00 0.00 32.25 1.28
6010 7032 8.861033 AAACGAGTTTATATGCACGTAGAATA 57.139 30.769 0.00 0.00 32.25 1.75
6011 7033 7.766219 AAACGAGTTTATATGCACGTAGAAT 57.234 32.000 0.00 0.00 32.25 2.40
6012 7034 7.970061 ACTAAACGAGTTTATATGCACGTAGAA 59.030 33.333 8.63 0.00 33.13 2.10
6013 7035 7.430211 CACTAAACGAGTTTATATGCACGTAGA 59.570 37.037 8.63 0.00 35.64 2.59
6014 7036 7.305820 CCACTAAACGAGTTTATATGCACGTAG 60.306 40.741 8.63 0.00 35.64 3.51
6015 7037 6.473131 CCACTAAACGAGTTTATATGCACGTA 59.527 38.462 8.63 0.00 35.64 3.57
6016 7038 5.290158 CCACTAAACGAGTTTATATGCACGT 59.710 40.000 8.63 0.00 35.64 4.49
6017 7039 5.517411 TCCACTAAACGAGTTTATATGCACG 59.483 40.000 8.63 0.00 35.64 5.34
6018 7040 6.897259 TCCACTAAACGAGTTTATATGCAC 57.103 37.500 8.63 0.00 35.64 4.57
6019 7041 7.908827 TTTCCACTAAACGAGTTTATATGCA 57.091 32.000 8.63 0.00 35.64 3.96
6020 7042 9.434559 GATTTTCCACTAAACGAGTTTATATGC 57.565 33.333 8.63 0.00 35.64 3.14
6021 7043 9.632969 CGATTTTCCACTAAACGAGTTTATATG 57.367 33.333 8.63 9.82 35.64 1.78
6022 7044 9.590451 TCGATTTTCCACTAAACGAGTTTATAT 57.410 29.630 8.63 0.00 35.64 0.86
6023 7045 8.984891 TCGATTTTCCACTAAACGAGTTTATA 57.015 30.769 8.63 0.00 35.64 0.98
6024 7046 7.816031 TCTCGATTTTCCACTAAACGAGTTTAT 59.184 33.333 0.00 0.00 38.41 1.40
6025 7047 7.147312 TCTCGATTTTCCACTAAACGAGTTTA 58.853 34.615 0.00 8.00 38.41 2.01
6026 7048 5.987347 TCTCGATTTTCCACTAAACGAGTTT 59.013 36.000 0.00 6.46 38.41 2.66
6027 7049 5.535333 TCTCGATTTTCCACTAAACGAGTT 58.465 37.500 0.00 0.00 38.41 3.01
6028 7050 5.130292 TCTCGATTTTCCACTAAACGAGT 57.870 39.130 0.00 0.00 38.41 4.18
6029 7051 5.634020 AGTTCTCGATTTTCCACTAAACGAG 59.366 40.000 0.00 0.00 38.50 4.18
6030 7052 5.535333 AGTTCTCGATTTTCCACTAAACGA 58.465 37.500 0.00 0.00 0.00 3.85
6031 7053 5.840940 AGTTCTCGATTTTCCACTAAACG 57.159 39.130 0.00 0.00 0.00 3.60
6032 7054 7.913821 ACAAAAGTTCTCGATTTTCCACTAAAC 59.086 33.333 0.00 0.00 0.00 2.01
6033 7055 7.992008 ACAAAAGTTCTCGATTTTCCACTAAA 58.008 30.769 0.00 0.00 0.00 1.85
6034 7056 7.497909 AGACAAAAGTTCTCGATTTTCCACTAA 59.502 33.333 0.00 0.00 0.00 2.24
6035 7057 6.990349 AGACAAAAGTTCTCGATTTTCCACTA 59.010 34.615 0.00 0.00 0.00 2.74
6036 7058 5.823045 AGACAAAAGTTCTCGATTTTCCACT 59.177 36.000 0.00 0.00 0.00 4.00
6037 7059 6.061231 AGACAAAAGTTCTCGATTTTCCAC 57.939 37.500 0.00 0.00 0.00 4.02
6038 7060 5.820423 TGAGACAAAAGTTCTCGATTTTCCA 59.180 36.000 0.00 0.00 42.22 3.53
6039 7061 6.136743 GTGAGACAAAAGTTCTCGATTTTCC 58.863 40.000 0.00 0.00 42.22 3.13
6040 7062 6.715464 TGTGAGACAAAAGTTCTCGATTTTC 58.285 36.000 0.00 0.00 42.22 2.29
6041 7063 6.677781 TGTGAGACAAAAGTTCTCGATTTT 57.322 33.333 0.00 0.00 42.22 1.82
6042 7064 6.662616 CATGTGAGACAAAAGTTCTCGATTT 58.337 36.000 0.00 0.00 42.22 2.17
6043 7065 5.334414 GCATGTGAGACAAAAGTTCTCGATT 60.334 40.000 0.00 0.00 42.22 3.34
6044 7066 4.153117 GCATGTGAGACAAAAGTTCTCGAT 59.847 41.667 0.00 0.00 42.22 3.59
6045 7067 3.494626 GCATGTGAGACAAAAGTTCTCGA 59.505 43.478 0.00 0.00 42.22 4.04
6046 7068 3.248363 TGCATGTGAGACAAAAGTTCTCG 59.752 43.478 0.00 0.00 42.22 4.04
6047 7069 4.818534 TGCATGTGAGACAAAAGTTCTC 57.181 40.909 0.00 0.00 40.10 2.87
6048 7070 4.883585 TCTTGCATGTGAGACAAAAGTTCT 59.116 37.500 0.00 0.00 0.00 3.01
6049 7071 5.173774 TCTTGCATGTGAGACAAAAGTTC 57.826 39.130 0.00 0.00 0.00 3.01
6050 7072 5.581126 TTCTTGCATGTGAGACAAAAGTT 57.419 34.783 0.00 0.00 0.00 2.66
6051 7073 5.450965 CCTTTCTTGCATGTGAGACAAAAGT 60.451 40.000 0.00 0.00 0.00 2.66
6052 7074 4.980434 CCTTTCTTGCATGTGAGACAAAAG 59.020 41.667 0.00 1.08 0.00 2.27
6053 7075 4.644234 TCCTTTCTTGCATGTGAGACAAAA 59.356 37.500 0.00 0.00 0.00 2.44
6054 7076 4.206375 TCCTTTCTTGCATGTGAGACAAA 58.794 39.130 0.00 0.00 0.00 2.83
6055 7077 3.819368 TCCTTTCTTGCATGTGAGACAA 58.181 40.909 0.00 0.00 0.00 3.18
6056 7078 3.490439 TCCTTTCTTGCATGTGAGACA 57.510 42.857 0.00 0.00 0.00 3.41
6057 7079 4.836125 TTTCCTTTCTTGCATGTGAGAC 57.164 40.909 0.00 0.00 0.00 3.36
6058 7080 5.850557 TTTTTCCTTTCTTGCATGTGAGA 57.149 34.783 0.00 0.00 0.00 3.27
6059 7081 7.486802 AAATTTTTCCTTTCTTGCATGTGAG 57.513 32.000 0.00 0.00 0.00 3.51
6060 7082 8.203485 ACTAAATTTTTCCTTTCTTGCATGTGA 58.797 29.630 0.00 0.00 0.00 3.58
6061 7083 8.277713 CACTAAATTTTTCCTTTCTTGCATGTG 58.722 33.333 0.00 0.00 0.00 3.21
6062 7084 7.986889 ACACTAAATTTTTCCTTTCTTGCATGT 59.013 29.630 0.00 0.00 0.00 3.21
6063 7085 8.369218 ACACTAAATTTTTCCTTTCTTGCATG 57.631 30.769 0.00 0.00 0.00 4.06
6064 7086 8.962884 AACACTAAATTTTTCCTTTCTTGCAT 57.037 26.923 0.00 0.00 0.00 3.96
6065 7087 9.877178 TTAACACTAAATTTTTCCTTTCTTGCA 57.123 25.926 0.00 0.00 0.00 4.08
6091 7113 6.165700 ACATGTCTCATGAAAAGCCTTTTT 57.834 33.333 15.25 0.00 39.16 1.94
6092 7114 5.796424 ACATGTCTCATGAAAAGCCTTTT 57.204 34.783 15.25 1.18 35.12 2.27
6093 7115 5.796424 AACATGTCTCATGAAAAGCCTTT 57.204 34.783 15.25 0.00 0.00 3.11
6094 7116 5.796424 AAACATGTCTCATGAAAAGCCTT 57.204 34.783 15.25 0.00 0.00 4.35
6095 7117 5.796424 AAAACATGTCTCATGAAAAGCCT 57.204 34.783 15.25 0.00 0.00 4.58
6124 7146 8.670135 CCGACATTTCATACACCTTATGTAAAA 58.330 33.333 0.00 0.00 46.90 1.52
6125 7147 7.281324 CCCGACATTTCATACACCTTATGTAAA 59.719 37.037 0.00 0.00 46.90 2.01
6126 7148 6.764085 CCCGACATTTCATACACCTTATGTAA 59.236 38.462 0.00 0.00 46.90 2.41
6128 7150 5.123227 CCCGACATTTCATACACCTTATGT 58.877 41.667 0.00 0.00 46.06 2.29
6129 7151 5.123227 ACCCGACATTTCATACACCTTATG 58.877 41.667 0.00 0.00 0.00 1.90
6130 7152 5.367945 ACCCGACATTTCATACACCTTAT 57.632 39.130 0.00 0.00 0.00 1.73
6131 7153 4.829872 ACCCGACATTTCATACACCTTA 57.170 40.909 0.00 0.00 0.00 2.69
6132 7154 3.713826 ACCCGACATTTCATACACCTT 57.286 42.857 0.00 0.00 0.00 3.50
6133 7155 3.713826 AACCCGACATTTCATACACCT 57.286 42.857 0.00 0.00 0.00 4.00
6134 7156 4.216687 TGAAAACCCGACATTTCATACACC 59.783 41.667 5.67 0.00 39.81 4.16
6135 7157 5.151389 GTGAAAACCCGACATTTCATACAC 58.849 41.667 10.97 0.00 44.62 2.90
6136 7158 4.216687 GGTGAAAACCCGACATTTCATACA 59.783 41.667 10.97 0.00 44.62 2.29
6137 7159 4.729595 GGTGAAAACCCGACATTTCATAC 58.270 43.478 10.97 6.02 44.62 2.39
6139 7161 3.934457 GGTGAAAACCCGACATTTCAT 57.066 42.857 10.97 0.00 44.62 2.57
6148 7170 1.862411 GCAAGTTTCGGTGAAAACCCG 60.862 52.381 0.00 0.00 46.83 5.28
6149 7171 1.537348 GGCAAGTTTCGGTGAAAACCC 60.537 52.381 0.00 0.00 39.46 4.11
6150 7172 1.847818 GGCAAGTTTCGGTGAAAACC 58.152 50.000 0.00 0.00 39.46 3.27
6151 7173 1.202211 ACGGCAAGTTTCGGTGAAAAC 60.202 47.619 0.00 0.00 39.03 2.43
6152 7174 1.096416 ACGGCAAGTTTCGGTGAAAA 58.904 45.000 0.00 0.00 33.14 2.29
6153 7175 0.378962 CACGGCAAGTTTCGGTGAAA 59.621 50.000 7.30 0.00 37.06 2.69
6154 7176 0.745128 ACACGGCAAGTTTCGGTGAA 60.745 50.000 17.54 0.00 37.92 3.18
6155 7177 1.153329 ACACGGCAAGTTTCGGTGA 60.153 52.632 17.54 0.00 37.92 4.02
6156 7178 1.010125 CACACGGCAAGTTTCGGTG 60.010 57.895 10.78 10.78 39.63 4.94
6157 7179 0.179078 TACACACGGCAAGTTTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
6158 7180 0.938713 TTACACACGGCAAGTTTCGG 59.061 50.000 0.00 0.00 0.00 4.30
6159 7181 2.741122 TTTACACACGGCAAGTTTCG 57.259 45.000 0.00 0.00 0.00 3.46
6160 7182 5.098218 TGTATTTACACACGGCAAGTTTC 57.902 39.130 0.00 0.00 0.00 2.78
6161 7183 5.502153 TTGTATTTACACACGGCAAGTTT 57.498 34.783 0.00 0.00 35.64 2.66
6162 7184 5.009210 ACATTGTATTTACACACGGCAAGTT 59.991 36.000 0.00 0.00 35.64 2.66
6163 7185 4.517453 ACATTGTATTTACACACGGCAAGT 59.483 37.500 0.00 0.00 35.64 3.16
6164 7186 5.041951 ACATTGTATTTACACACGGCAAG 57.958 39.130 0.00 0.00 35.64 4.01
6165 7187 5.008712 TCAACATTGTATTTACACACGGCAA 59.991 36.000 0.00 0.00 35.64 4.52
6166 7188 4.515567 TCAACATTGTATTTACACACGGCA 59.484 37.500 0.00 0.00 35.64 5.69
6167 7189 5.037015 TCAACATTGTATTTACACACGGC 57.963 39.130 0.00 0.00 35.64 5.68
6168 7190 6.474819 TCTCAACATTGTATTTACACACGG 57.525 37.500 0.00 0.00 35.64 4.94
6169 7191 7.478355 CACATCTCAACATTGTATTTACACACG 59.522 37.037 0.00 0.00 35.64 4.49
6170 7192 7.271223 GCACATCTCAACATTGTATTTACACAC 59.729 37.037 0.00 0.00 35.64 3.82
6171 7193 7.040823 TGCACATCTCAACATTGTATTTACACA 60.041 33.333 0.00 0.00 35.64 3.72
6172 7194 7.271223 GTGCACATCTCAACATTGTATTTACAC 59.729 37.037 13.17 0.00 35.64 2.90
6173 7195 7.304735 GTGCACATCTCAACATTGTATTTACA 58.695 34.615 13.17 0.00 0.00 2.41
6174 7196 6.465781 CGTGCACATCTCAACATTGTATTTAC 59.534 38.462 18.64 0.00 0.00 2.01
6175 7197 6.148645 ACGTGCACATCTCAACATTGTATTTA 59.851 34.615 18.64 0.00 0.00 1.40
6176 7198 5.048782 ACGTGCACATCTCAACATTGTATTT 60.049 36.000 18.64 0.00 0.00 1.40
6177 7199 4.455533 ACGTGCACATCTCAACATTGTATT 59.544 37.500 18.64 0.00 0.00 1.89
6178 7200 4.002982 ACGTGCACATCTCAACATTGTAT 58.997 39.130 18.64 0.00 0.00 2.29
6179 7201 3.398406 ACGTGCACATCTCAACATTGTA 58.602 40.909 18.64 0.00 0.00 2.41
6180 7202 2.221169 ACGTGCACATCTCAACATTGT 58.779 42.857 18.64 0.00 0.00 2.71
6181 7203 2.223845 TGACGTGCACATCTCAACATTG 59.776 45.455 18.64 0.00 0.00 2.82
6182 7204 2.493035 TGACGTGCACATCTCAACATT 58.507 42.857 18.64 0.00 0.00 2.71
6183 7205 2.168326 TGACGTGCACATCTCAACAT 57.832 45.000 18.64 0.00 0.00 2.71
6184 7206 1.946745 TTGACGTGCACATCTCAACA 58.053 45.000 18.64 2.85 0.00 3.33
6185 7207 3.542712 ATTTGACGTGCACATCTCAAC 57.457 42.857 18.64 0.21 0.00 3.18
6186 7208 4.202000 ACAAATTTGACGTGCACATCTCAA 60.202 37.500 24.64 16.16 0.00 3.02
6187 7209 3.314913 ACAAATTTGACGTGCACATCTCA 59.685 39.130 24.64 10.98 0.00 3.27
6188 7210 3.665409 CACAAATTTGACGTGCACATCTC 59.335 43.478 24.64 8.37 0.00 2.75
6189 7211 3.066621 ACACAAATTTGACGTGCACATCT 59.933 39.130 24.64 0.00 33.89 2.90
6190 7212 3.371168 ACACAAATTTGACGTGCACATC 58.629 40.909 24.64 12.53 33.89 3.06
6191 7213 3.435105 ACACAAATTTGACGTGCACAT 57.565 38.095 24.64 0.00 33.89 3.21
6192 7214 2.929531 ACACAAATTTGACGTGCACA 57.070 40.000 24.64 0.00 33.89 4.57
6193 7215 2.213131 CGAACACAAATTTGACGTGCAC 59.787 45.455 24.64 6.82 33.89 4.57
6194 7216 2.445316 CGAACACAAATTTGACGTGCA 58.555 42.857 24.64 0.00 33.89 4.57
6195 7217 1.778591 CCGAACACAAATTTGACGTGC 59.221 47.619 24.64 16.88 33.89 5.34
6196 7218 3.326733 TCCGAACACAAATTTGACGTG 57.673 42.857 24.64 14.45 36.70 4.49
6197 7219 4.561735 AATCCGAACACAAATTTGACGT 57.438 36.364 24.64 16.84 0.00 4.34
6198 7220 5.881637 AAAATCCGAACACAAATTTGACG 57.118 34.783 24.64 20.02 0.00 4.35
6230 7252 8.999431 GCTCCTACCATCGAAAAATATATTTCA 58.001 33.333 11.08 0.00 38.87 2.69
6231 7253 8.999431 TGCTCCTACCATCGAAAAATATATTTC 58.001 33.333 11.08 0.34 36.24 2.17
6232 7254 8.918202 TGCTCCTACCATCGAAAAATATATTT 57.082 30.769 4.81 4.81 0.00 1.40
6235 7257 9.599866 CATATGCTCCTACCATCGAAAAATATA 57.400 33.333 0.00 0.00 0.00 0.86
6236 7258 7.066284 GCATATGCTCCTACCATCGAAAAATAT 59.934 37.037 20.64 0.00 38.21 1.28
6237 7259 6.371548 GCATATGCTCCTACCATCGAAAAATA 59.628 38.462 20.64 0.00 38.21 1.40
6238 7260 5.182001 GCATATGCTCCTACCATCGAAAAAT 59.818 40.000 20.64 0.00 38.21 1.82
6239 7261 4.515191 GCATATGCTCCTACCATCGAAAAA 59.485 41.667 20.64 0.00 38.21 1.94
6240 7262 4.065088 GCATATGCTCCTACCATCGAAAA 58.935 43.478 20.64 0.00 38.21 2.29
6241 7263 3.664107 GCATATGCTCCTACCATCGAAA 58.336 45.455 20.64 0.00 38.21 3.46
6242 7264 3.319137 GCATATGCTCCTACCATCGAA 57.681 47.619 20.64 0.00 38.21 3.71
6255 7277 0.824595 TGGCACATGGGAGCATATGC 60.825 55.000 20.36 20.36 42.49 3.14
6256 7278 1.694844 TTGGCACATGGGAGCATATG 58.305 50.000 0.00 0.00 39.30 1.78
6257 7279 2.313317 CTTTGGCACATGGGAGCATAT 58.687 47.619 0.00 0.00 39.30 1.78
6258 7280 1.005805 ACTTTGGCACATGGGAGCATA 59.994 47.619 0.00 0.00 39.30 3.14
6259 7281 0.251922 ACTTTGGCACATGGGAGCAT 60.252 50.000 0.00 0.00 39.30 3.79
6260 7282 0.403655 TACTTTGGCACATGGGAGCA 59.596 50.000 0.00 0.00 39.30 4.26
6261 7283 1.544724 TTACTTTGGCACATGGGAGC 58.455 50.000 0.00 0.00 39.30 4.70
6262 7284 4.806640 AATTTACTTTGGCACATGGGAG 57.193 40.909 0.00 0.00 39.30 4.30
6263 7285 4.321601 CGAAATTTACTTTGGCACATGGGA 60.322 41.667 0.00 0.00 39.30 4.37
6264 7286 3.925913 CGAAATTTACTTTGGCACATGGG 59.074 43.478 0.00 0.00 39.30 4.00
6265 7287 4.555262 ACGAAATTTACTTTGGCACATGG 58.445 39.130 0.00 0.00 39.30 3.66
6266 7288 6.420604 AGAAACGAAATTTACTTTGGCACATG 59.579 34.615 0.00 0.00 39.30 3.21
6267 7289 6.512297 AGAAACGAAATTTACTTTGGCACAT 58.488 32.000 0.00 0.00 39.30 3.21
6268 7290 5.897050 AGAAACGAAATTTACTTTGGCACA 58.103 33.333 0.00 0.00 0.00 4.57
6269 7291 6.254804 ACAAGAAACGAAATTTACTTTGGCAC 59.745 34.615 0.00 0.00 0.00 5.01
6270 7292 6.254589 CACAAGAAACGAAATTTACTTTGGCA 59.745 34.615 0.00 0.00 0.00 4.92
6271 7293 6.636443 CACAAGAAACGAAATTTACTTTGGC 58.364 36.000 0.00 0.00 0.00 4.52
6272 7294 6.254589 TGCACAAGAAACGAAATTTACTTTGG 59.745 34.615 0.00 0.00 0.00 3.28
6273 7295 7.009174 AGTGCACAAGAAACGAAATTTACTTTG 59.991 33.333 21.04 0.00 0.00 2.77
6274 7296 7.033185 AGTGCACAAGAAACGAAATTTACTTT 58.967 30.769 21.04 0.00 0.00 2.66
6275 7297 6.560711 AGTGCACAAGAAACGAAATTTACTT 58.439 32.000 21.04 0.00 0.00 2.24
6276 7298 6.131544 AGTGCACAAGAAACGAAATTTACT 57.868 33.333 21.04 0.00 0.00 2.24
6277 7299 7.409343 GCATAGTGCACAAGAAACGAAATTTAC 60.409 37.037 21.04 0.00 44.26 2.01
6278 7300 6.580791 GCATAGTGCACAAGAAACGAAATTTA 59.419 34.615 21.04 0.00 44.26 1.40
6279 7301 5.402270 GCATAGTGCACAAGAAACGAAATTT 59.598 36.000 21.04 0.00 44.26 1.82
6280 7302 4.917415 GCATAGTGCACAAGAAACGAAATT 59.083 37.500 21.04 0.00 44.26 1.82
6281 7303 4.475944 GCATAGTGCACAAGAAACGAAAT 58.524 39.130 21.04 0.00 44.26 2.17
6282 7304 3.884169 GCATAGTGCACAAGAAACGAAA 58.116 40.909 21.04 0.00 44.26 3.46
6283 7305 3.536158 GCATAGTGCACAAGAAACGAA 57.464 42.857 21.04 0.00 44.26 3.85
6298 7320 9.286170 TGATGGAGTAAACTACTACTAGCATAG 57.714 37.037 0.00 0.00 40.41 2.23
6299 7321 9.809395 ATGATGGAGTAAACTACTACTAGCATA 57.191 33.333 0.00 0.00 40.41 3.14
6300 7322 8.580720 CATGATGGAGTAAACTACTACTAGCAT 58.419 37.037 0.00 0.00 40.41 3.79
6301 7323 7.560262 ACATGATGGAGTAAACTACTACTAGCA 59.440 37.037 0.00 0.00 40.41 3.49
6302 7324 7.942990 ACATGATGGAGTAAACTACTACTAGC 58.057 38.462 0.00 0.00 40.41 3.42
6360 7382 9.290988 TCTCTGTTTGTATAAATAAAGTTGCCA 57.709 29.630 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.