Multiple sequence alignment - TraesCS3A01G395400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G395400 chr3A 100.000 8765 0 0 1 8765 642718284 642709520 0.000000e+00 16187.0
1 TraesCS3A01G395400 chr3A 75.949 474 57 18 6828 7278 642710942 642710503 3.230000e-44 191.0
2 TraesCS3A01G395400 chr3A 75.949 474 57 20 7343 7782 642711457 642711007 3.230000e-44 191.0
3 TraesCS3A01G395400 chr3B 96.088 3093 99 13 4705 7782 665999544 665996459 0.000000e+00 5022.0
4 TraesCS3A01G395400 chr3B 96.091 2251 73 10 2468 4708 666001933 665999688 0.000000e+00 3655.0
5 TraesCS3A01G395400 chr3B 92.168 2375 133 24 4 2346 666004283 666001930 0.000000e+00 3306.0
6 TraesCS3A01G395400 chr3B 87.790 991 65 17 7801 8765 665996473 665995513 0.000000e+00 1109.0
7 TraesCS3A01G395400 chr3B 89.571 163 16 1 7165 7326 665996573 665996411 1.150000e-48 206.0
8 TraesCS3A01G395400 chr3B 78.078 333 42 18 7343 7664 665997415 665997103 1.940000e-41 182.0
9 TraesCS3A01G395400 chr3B 93.043 115 7 1 7668 7782 665997069 665996956 5.440000e-37 167.0
10 TraesCS3A01G395400 chr3D 93.622 3136 107 28 4705 7782 504306397 504303297 0.000000e+00 4597.0
11 TraesCS3A01G395400 chr3D 97.196 2247 54 8 2468 4708 504308783 504306540 0.000000e+00 3792.0
12 TraesCS3A01G395400 chr3D 92.016 1741 102 17 141 1860 504310945 504309221 0.000000e+00 2410.0
13 TraesCS3A01G395400 chr3D 96.847 444 12 1 1905 2346 504309223 504308780 0.000000e+00 741.0
14 TraesCS3A01G395400 chr3D 85.918 561 39 20 8241 8765 504302934 504302378 5.940000e-156 562.0
15 TraesCS3A01G395400 chr3D 94.022 368 21 1 7813 8180 504303299 504302933 2.760000e-154 556.0
16 TraesCS3A01G395400 chr3D 97.810 137 3 0 2343 2479 496172882 496172746 4.090000e-58 237.0
17 TraesCS3A01G395400 chr3D 98.507 134 2 0 2342 2475 614251219 614251086 4.090000e-58 237.0
18 TraesCS3A01G395400 chr3D 99.231 130 1 0 2341 2470 210622551 210622422 1.470000e-57 235.0
19 TraesCS3A01G395400 chr3D 90.667 150 13 1 7165 7313 504303411 504303262 1.930000e-46 198.0
20 TraesCS3A01G395400 chr3D 81.172 239 30 10 7345 7579 504304248 504304021 2.510000e-40 178.0
21 TraesCS3A01G395400 chr3D 93.043 115 7 1 7668 7782 504303910 504303797 5.440000e-37 167.0
22 TraesCS3A01G395400 chr3D 75.625 320 55 11 6828 7129 504303732 504303418 4.270000e-28 137.0
23 TraesCS3A01G395400 chr1B 98.529 136 2 0 2343 2478 623732111 623731976 3.160000e-59 241.0
24 TraesCS3A01G395400 chr2D 97.810 137 3 0 2338 2474 536091022 536091158 4.090000e-58 237.0
25 TraesCS3A01G395400 chr5D 97.101 138 3 1 2332 2469 361648078 361647942 1.900000e-56 231.0
26 TraesCS3A01G395400 chr5D 81.868 182 26 6 1 179 549604211 549604034 7.090000e-31 147.0
27 TraesCS3A01G395400 chr4B 95.139 144 7 0 2343 2486 352135513 352135656 2.460000e-55 228.0
28 TraesCS3A01G395400 chr1D 92.357 157 9 3 2340 2495 162866770 162866924 4.120000e-53 220.0
29 TraesCS3A01G395400 chr6B 91.667 156 12 1 2340 2495 175824893 175825047 1.920000e-51 215.0
30 TraesCS3A01G395400 chr4D 98.276 116 2 0 2231 2346 481068903 481068788 4.150000e-48 204.0
31 TraesCS3A01G395400 chr2A 81.707 82 15 0 5290 5371 585819470 585819389 1.580000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G395400 chr3A 642709520 642718284 8764 True 16187.000000 16187 100.000000 1 8765 1 chr3A.!!$R1 8764
1 TraesCS3A01G395400 chr3B 665995513 666004283 8770 True 1949.571429 5022 90.404143 4 8765 7 chr3B.!!$R1 8761
2 TraesCS3A01G395400 chr3D 504302378 504310945 8567 True 1333.800000 4597 90.012800 141 8765 10 chr3D.!!$R4 8624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.108138 GGTCTGTATCAGCGGTGCTT 60.108 55.000 10.38 2.26 36.40 3.91 F
635 649 0.332293 TCATCAAATGCAGCCCTCCA 59.668 50.000 0.00 0.00 0.00 3.86 F
1617 1651 0.334676 TGTAGCCAAATTGGGAGGGG 59.665 55.000 14.59 0.00 38.19 4.79 F
1928 1962 0.531974 TCACTGCAACCAAGTCCGTC 60.532 55.000 0.00 0.00 0.00 4.79 F
2363 2404 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17 F
2467 2508 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85 F
4123 4171 1.004277 GTCAATGTGCCCCCAGAAGTA 59.996 52.381 0.00 0.00 0.00 2.24 F
4958 5158 1.201429 GCCCCCTCAAGTGAAGGAGA 61.201 60.000 0.00 0.00 32.87 3.71 F
5713 5934 0.249280 TGATGTGTCGTGTTGCGTCT 60.249 50.000 0.00 0.00 42.13 4.18 F
6524 6773 0.325933 CTGGATGGTGCACCTTCTGA 59.674 55.000 36.78 26.69 39.41 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1810 0.923358 TTGTTCCACTCCCACAGGTT 59.077 50.000 0.00 0.00 0.00 3.50 R
2451 2492 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
2757 2798 0.677731 CATCGGAACCTGTGGCACAT 60.678 55.000 22.35 6.31 44.52 3.21 R
3005 3046 1.110442 CTCCCAACAGTTTTGCCACA 58.890 50.000 0.00 0.00 0.00 4.17 R
4123 4171 0.393820 TAACACGCCCTTTCCGAAGT 59.606 50.000 0.00 0.00 0.00 3.01 R
4154 4202 0.697658 TTGATCCAGTGGATGTGCCA 59.302 50.000 29.60 17.37 43.27 4.92 R
5529 5750 0.324738 TGTGGTCTGGGTTTTTGGCA 60.325 50.000 0.00 0.00 0.00 4.92 R
6636 6885 0.038067 TTGTACACGTGTGATCCGGG 60.038 55.000 30.83 0.00 34.16 5.73 R
7297 7555 1.303970 AAGGAAGAGGCCAAGCTGC 60.304 57.895 5.01 0.00 0.00 5.25 R
8442 8744 0.041238 CCTGGTCCAGAGGTCACCTA 59.959 60.000 21.23 0.00 31.76 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.706842 TGGATAAGATCAACCCTTAGCC 57.293 45.455 9.49 9.49 47.00 3.93
78 79 5.048846 GGATAAGATCAACCCTTAGCCAA 57.951 43.478 11.06 0.00 46.42 4.52
84 85 0.966179 CAACCCTTAGCCAACAACCC 59.034 55.000 0.00 0.00 0.00 4.11
102 103 5.987347 ACAACCCGCTACATACATATTACAC 59.013 40.000 0.00 0.00 0.00 2.90
107 108 4.089493 CGCTACATACATATTACACGCACC 59.911 45.833 0.00 0.00 0.00 5.01
114 115 4.771903 ACATATTACACGCACCCACATAA 58.228 39.130 0.00 0.00 0.00 1.90
119 120 2.627945 ACACGCACCCACATAATACAG 58.372 47.619 0.00 0.00 0.00 2.74
122 123 1.318576 GCACCCACATAATACAGCCC 58.681 55.000 0.00 0.00 0.00 5.19
152 153 2.819019 TGTCACATTGCACCAACCTATG 59.181 45.455 0.00 0.00 0.00 2.23
221 222 0.108138 GGTCTGTATCAGCGGTGCTT 60.108 55.000 10.38 2.26 36.40 3.91
225 226 1.409064 CTGTATCAGCGGTGCTTCCTA 59.591 52.381 10.38 0.00 36.40 2.94
227 228 2.434336 TGTATCAGCGGTGCTTCCTAAT 59.566 45.455 10.38 0.00 36.40 1.73
234 235 2.811873 GCGGTGCTTCCTAATCCATGAT 60.812 50.000 0.00 0.00 0.00 2.45
252 253 2.287644 TGATGAGCACAAACGTGAACAG 59.712 45.455 0.00 0.00 36.43 3.16
258 259 2.176369 CACAAACGTGAACAGTTGCAG 58.824 47.619 0.00 0.00 36.43 4.41
260 261 2.227865 ACAAACGTGAACAGTTGCAGTT 59.772 40.909 0.00 0.00 31.43 3.16
273 278 3.912157 CAGTTGTGCAAGCAAGCG 58.088 55.556 0.00 0.00 37.31 4.68
288 293 2.478539 GCAAGCGAGATTTGATGGGTTC 60.479 50.000 0.00 0.00 0.00 3.62
303 308 1.321074 GGTTCTCCTCACCGGATCGT 61.321 60.000 9.46 0.00 42.12 3.73
305 310 1.955080 GTTCTCCTCACCGGATCGTAT 59.045 52.381 9.46 0.00 42.12 3.06
354 360 2.047274 TTGTGGTGCGCCTCTAGC 60.047 61.111 18.96 0.00 38.52 3.42
422 428 1.922444 GCTCGAGCGATCTACTTTCCG 60.922 57.143 23.61 0.00 0.00 4.30
492 501 0.745845 CGCATTGACCTGGCTAAGCT 60.746 55.000 0.00 0.00 0.00 3.74
536 545 3.004002 CGAGCGAACCATATACCAGTACA 59.996 47.826 0.00 0.00 0.00 2.90
537 546 4.296690 GAGCGAACCATATACCAGTACAC 58.703 47.826 0.00 0.00 0.00 2.90
551 560 2.094854 CAGTACACTACCACCTCGTTCC 60.095 54.545 0.00 0.00 0.00 3.62
563 572 2.664851 CGTTCCAGAAGCACGCCA 60.665 61.111 0.00 0.00 0.00 5.69
564 573 2.034879 CGTTCCAGAAGCACGCCAT 61.035 57.895 0.00 0.00 0.00 4.40
565 574 1.577328 CGTTCCAGAAGCACGCCATT 61.577 55.000 0.00 0.00 0.00 3.16
566 575 1.448985 GTTCCAGAAGCACGCCATTA 58.551 50.000 0.00 0.00 0.00 1.90
567 576 1.810151 GTTCCAGAAGCACGCCATTAA 59.190 47.619 0.00 0.00 0.00 1.40
568 577 2.418368 TCCAGAAGCACGCCATTAAT 57.582 45.000 0.00 0.00 0.00 1.40
569 578 2.016318 TCCAGAAGCACGCCATTAATG 58.984 47.619 8.58 8.58 0.00 1.90
626 640 5.585844 CCCCAACCTATTTTTCATCAAATGC 59.414 40.000 0.00 0.00 0.00 3.56
635 649 0.332293 TCATCAAATGCAGCCCTCCA 59.668 50.000 0.00 0.00 0.00 3.86
648 662 1.736645 CCTCCAACACTACGCCACG 60.737 63.158 0.00 0.00 0.00 4.94
733 747 2.187707 GGCAGCGTCAATGCTAAAATG 58.812 47.619 0.00 0.00 45.23 2.32
739 760 3.416277 CGTCAATGCTAAAATGGTCGTG 58.584 45.455 0.00 0.00 0.00 4.35
775 796 1.661498 ATGAGAGCGCGCAGAGAGAA 61.661 55.000 35.10 12.06 0.00 2.87
778 799 2.797462 GAGCGCGCAGAGAGAAAGC 61.797 63.158 35.10 4.90 0.00 3.51
822 850 1.228306 CCCTACGCAAAACCCCACA 60.228 57.895 0.00 0.00 0.00 4.17
1401 1432 3.008923 TGGAAAAATGGATTTTGGGAGCC 59.991 43.478 0.00 0.00 41.27 4.70
1457 1491 5.936187 TGTCATGTTCATGGCCAATATTT 57.064 34.783 10.96 0.00 0.00 1.40
1459 1493 6.709281 TGTCATGTTCATGGCCAATATTTTT 58.291 32.000 10.96 0.00 0.00 1.94
1462 1496 7.119553 GTCATGTTCATGGCCAATATTTTTGTT 59.880 33.333 10.96 0.00 0.00 2.83
1464 1498 6.767456 TGTTCATGGCCAATATTTTTGTTCT 58.233 32.000 10.96 0.00 0.00 3.01
1481 1515 3.131396 GTTCTGTGCTTCTCGAAAAGGA 58.869 45.455 0.00 0.00 0.00 3.36
1556 1590 8.516234 TCTCAACTCACTTAGCTAAACTAGAAG 58.484 37.037 7.74 0.00 30.79 2.85
1559 1593 7.527568 ACTCACTTAGCTAAACTAGAAGTGT 57.472 36.000 18.18 3.92 39.34 3.55
1593 1627 4.572389 GCCGACAATATGAGAAACTGTCAT 59.428 41.667 0.00 0.00 36.95 3.06
1617 1651 0.334676 TGTAGCCAAATTGGGAGGGG 59.665 55.000 14.59 0.00 38.19 4.79
1649 1683 6.825721 GTCAGAATAGGTGATCTTGTTGGATT 59.174 38.462 0.00 0.00 0.00 3.01
1718 1752 6.369615 GGTTCATAGCTGAAATTTGCAACAAT 59.630 34.615 0.00 0.00 42.85 2.71
1741 1775 8.772705 CAATTTTTCTGCTAAACTATGGCAAAA 58.227 29.630 0.00 0.00 35.49 2.44
1776 1810 1.196808 GCGAAGAAATTGGTTGCTCGA 59.803 47.619 0.00 0.00 0.00 4.04
1830 1864 0.965363 ATCCGCCACACCCAAACATC 60.965 55.000 0.00 0.00 0.00 3.06
1855 1889 9.588096 TCACTTTATTCTGTCAGCTAGGATATA 57.412 33.333 0.00 0.00 0.00 0.86
1885 1919 3.011818 TGCTGACTACTGCAATCATTGG 58.988 45.455 0.00 0.00 45.22 3.16
1891 1925 4.813027 ACTACTGCAATCATTGGCTTTTG 58.187 39.130 0.00 0.00 0.00 2.44
1898 1932 4.312443 CAATCATTGGCTTTTGCTCTGTT 58.688 39.130 0.00 0.00 46.54 3.16
1903 1937 1.065401 TGGCTTTTGCTCTGTTGAACG 59.935 47.619 0.00 0.00 46.54 3.95
1912 1946 4.482386 TGCTCTGTTGAACGTAGTATCAC 58.518 43.478 0.00 0.00 45.00 3.06
1913 1947 4.217767 TGCTCTGTTGAACGTAGTATCACT 59.782 41.667 0.00 0.00 45.00 3.41
1928 1962 0.531974 TCACTGCAACCAAGTCCGTC 60.532 55.000 0.00 0.00 0.00 4.79
1936 1970 3.485216 GCAACCAAGTCCGTCAAATATCG 60.485 47.826 0.00 0.00 0.00 2.92
2079 2120 8.680903 AGAGATTTATTGTTGATAGTTTGGCTG 58.319 33.333 0.00 0.00 0.00 4.85
2175 2216 8.932945 TTCTGAATCATGACATCACTTACTAC 57.067 34.615 0.00 0.00 0.00 2.73
2343 2384 8.908903 AGTGTTTTTCAGGTACATTCACAATTA 58.091 29.630 0.00 0.00 0.00 1.40
2344 2385 8.964150 GTGTTTTTCAGGTACATTCACAATTAC 58.036 33.333 0.00 0.00 0.00 1.89
2345 2386 8.908903 TGTTTTTCAGGTACATTCACAATTACT 58.091 29.630 0.00 0.00 0.00 2.24
2346 2387 9.394477 GTTTTTCAGGTACATTCACAATTACTC 57.606 33.333 0.00 0.00 0.00 2.59
2347 2388 7.681939 TTTCAGGTACATTCACAATTACTCC 57.318 36.000 0.00 0.00 0.00 3.85
2348 2389 5.741011 TCAGGTACATTCACAATTACTCCC 58.259 41.667 0.00 0.00 0.00 4.30
2349 2390 5.487488 TCAGGTACATTCACAATTACTCCCT 59.513 40.000 0.00 0.00 0.00 4.20
2350 2391 5.817816 CAGGTACATTCACAATTACTCCCTC 59.182 44.000 0.00 0.00 0.00 4.30
2351 2392 5.104485 AGGTACATTCACAATTACTCCCTCC 60.104 44.000 0.00 0.00 0.00 4.30
2352 2393 3.873910 ACATTCACAATTACTCCCTCCG 58.126 45.455 0.00 0.00 0.00 4.63
2353 2394 3.263425 ACATTCACAATTACTCCCTCCGT 59.737 43.478 0.00 0.00 0.00 4.69
2354 2395 3.604875 TTCACAATTACTCCCTCCGTC 57.395 47.619 0.00 0.00 0.00 4.79
2355 2396 1.829222 TCACAATTACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
2356 2397 1.134491 CACAATTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
2357 2398 1.200519 CAATTACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
2358 2399 1.557832 CAATTACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
2359 2400 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2360 2401 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2361 2402 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2362 2403 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2363 2404 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2364 2405 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2365 2406 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2366 2407 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2367 2408 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2368 2409 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2369 2410 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2370 2411 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2371 2412 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2372 2413 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2373 2414 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2374 2415 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2375 2416 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2376 2417 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2377 2418 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2378 2419 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2379 2420 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2380 2421 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2388 2429 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2389 2430 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2391 2432 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2392 2433 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2399 2440 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
2400 2441 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
2401 2442 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
2402 2443 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
2403 2444 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
2404 2445 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
2405 2446 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
2406 2447 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
2407 2448 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
2408 2449 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
2409 2450 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
2410 2451 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
2411 2452 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
2412 2453 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
2413 2454 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
2423 2464 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
2424 2465 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
2425 2466 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
2426 2467 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
2443 2484 8.234136 ACATCCGTATCTAGACAAATCTAACA 57.766 34.615 0.00 0.00 36.98 2.41
2444 2485 8.136165 ACATCCGTATCTAGACAAATCTAACAC 58.864 37.037 0.00 0.00 36.98 3.32
2445 2486 7.634671 TCCGTATCTAGACAAATCTAACACA 57.365 36.000 0.00 0.00 36.98 3.72
2446 2487 8.058667 TCCGTATCTAGACAAATCTAACACAA 57.941 34.615 0.00 0.00 36.98 3.33
2447 2488 8.188799 TCCGTATCTAGACAAATCTAACACAAG 58.811 37.037 0.00 0.00 36.98 3.16
2448 2489 8.188799 CCGTATCTAGACAAATCTAACACAAGA 58.811 37.037 0.00 0.00 36.98 3.02
2449 2490 9.569167 CGTATCTAGACAAATCTAACACAAGAA 57.431 33.333 0.00 0.00 36.98 2.52
2456 2497 8.143835 AGACAAATCTAACACAAGAATTTTGGG 58.856 33.333 0.00 2.34 33.04 4.12
2457 2498 8.017418 ACAAATCTAACACAAGAATTTTGGGA 57.983 30.769 8.87 0.00 33.04 4.37
2458 2499 7.926018 ACAAATCTAACACAAGAATTTTGGGAC 59.074 33.333 8.87 0.00 33.04 4.46
2459 2500 5.682943 TCTAACACAAGAATTTTGGGACG 57.317 39.130 8.87 0.00 0.00 4.79
2460 2501 3.726291 AACACAAGAATTTTGGGACGG 57.274 42.857 8.87 0.00 0.00 4.79
2461 2502 2.938838 ACACAAGAATTTTGGGACGGA 58.061 42.857 8.87 0.00 0.00 4.69
2462 2503 2.884639 ACACAAGAATTTTGGGACGGAG 59.115 45.455 8.87 0.00 0.00 4.63
2463 2504 2.228822 CACAAGAATTTTGGGACGGAGG 59.771 50.000 0.00 0.00 0.00 4.30
2464 2505 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2465 2506 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2466 2507 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2467 2508 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2479 2520 5.485620 GACGGAGGGAGTACTAAATTTGTT 58.514 41.667 0.00 0.00 0.00 2.83
2757 2798 2.066592 TGGGTGGGAACAATAGTCCAA 58.933 47.619 0.00 0.00 46.06 3.53
2885 2926 2.973694 TTATGTTGTCTAGGACGGGC 57.026 50.000 0.00 0.00 34.95 6.13
3005 3046 7.055667 ACTGGAAGATGACGATATATGTGTT 57.944 36.000 0.00 0.00 37.43 3.32
3059 3100 1.160137 GTGCATCTGGAACTGGTCAC 58.840 55.000 0.00 0.00 0.00 3.67
3119 3160 3.380004 TCATTTGAAGCACGGTTCTGTTT 59.620 39.130 10.08 0.00 0.00 2.83
3120 3161 4.576873 TCATTTGAAGCACGGTTCTGTTTA 59.423 37.500 10.08 0.00 0.00 2.01
3266 3310 4.143543 TGTTGCAGAAATCCAAGATGTCA 58.856 39.130 0.00 0.00 0.00 3.58
3360 3404 2.611292 GCTGAAGCTGCCTATACAGTTG 59.389 50.000 0.00 0.00 39.96 3.16
3766 3810 1.328680 GCTCATACGAGTTGGTGCATG 59.671 52.381 0.00 0.00 41.71 4.06
3775 3819 2.744202 GAGTTGGTGCATGTTAGTCCAG 59.256 50.000 0.00 0.00 0.00 3.86
3950 3996 9.877178 TTCAAAAGTAAAGTTTGCAGGATAAAA 57.123 25.926 6.47 0.00 36.19 1.52
4123 4171 1.004277 GTCAATGTGCCCCCAGAAGTA 59.996 52.381 0.00 0.00 0.00 2.24
4320 4371 7.617723 ACTGAGACTCCAGAAGATGTTATAACT 59.382 37.037 16.33 2.58 37.59 2.24
4461 4512 6.747414 AAGTTCCCTTTTGAAATTAGGCTT 57.253 33.333 0.00 0.00 31.41 4.35
4506 4557 8.037166 TGATCCATATCATCACATAGTTACTGC 58.963 37.037 0.00 0.00 37.20 4.40
4617 4668 6.206634 TGAGCATAAACTCGTTCATTTTCCTT 59.793 34.615 0.00 0.00 39.68 3.36
4618 4669 6.381801 AGCATAAACTCGTTCATTTTCCTTG 58.618 36.000 0.00 0.00 0.00 3.61
4620 4671 7.029563 GCATAAACTCGTTCATTTTCCTTGAT 58.970 34.615 0.00 0.00 0.00 2.57
4666 4717 3.560068 AGCAAACCGTACTCAAAGACTTG 59.440 43.478 0.00 0.00 0.00 3.16
4801 5000 6.467550 AGGAACTATTTGGAACTCTCCACCA 61.468 44.000 0.00 0.00 45.85 4.17
4820 5019 2.034878 CACTAGTAGGCTGCCATGAGA 58.965 52.381 22.65 0.66 0.00 3.27
4888 5088 8.733458 TCACTCTGAACTCAATTATGAATTTGG 58.267 33.333 0.00 0.00 34.49 3.28
4911 5111 8.463930 TGGCTCTTCATTTACCTTATAAATGG 57.536 34.615 15.75 5.07 42.24 3.16
4958 5158 1.201429 GCCCCCTCAAGTGAAGGAGA 61.201 60.000 0.00 0.00 32.87 3.71
5071 5271 7.921786 TCATCAAGGTTAACATGGAACTAAG 57.078 36.000 8.10 0.00 0.00 2.18
5106 5306 1.800586 CTATGCACACACACACTCACC 59.199 52.381 0.00 0.00 0.00 4.02
5180 5399 9.364989 CAATAAAAGAAAAGAACACTTCAACCA 57.635 29.630 0.00 0.00 0.00 3.67
5193 5412 6.913170 ACACTTCAACCACTGCAATAAATAG 58.087 36.000 0.00 0.00 0.00 1.73
5434 5653 7.928908 TTTGTTGATTTGTTATTCAGTCAGC 57.071 32.000 0.00 0.00 0.00 4.26
5711 5932 0.529773 AGTGATGTGTCGTGTTGCGT 60.530 50.000 0.00 0.00 42.13 5.24
5713 5934 0.249280 TGATGTGTCGTGTTGCGTCT 60.249 50.000 0.00 0.00 42.13 4.18
6208 6457 6.228258 TCTACTAAAGTTGGCAAACTAGTGG 58.772 40.000 16.60 14.29 46.15 4.00
6311 6560 3.191162 AGCGATGCAAAGCAAAGTAATGA 59.809 39.130 17.21 0.00 43.62 2.57
6425 6674 0.905357 AGAATTAGCTCCACTGCGGT 59.095 50.000 0.00 0.00 38.13 5.68
6524 6773 0.325933 CTGGATGGTGCACCTTCTGA 59.674 55.000 36.78 26.69 39.41 3.27
6547 6796 5.269505 AGAACCTAGTGATGCATACAGAC 57.730 43.478 0.00 0.00 0.00 3.51
6636 6885 0.810823 GTGCTGAGCTCTCATCTGCC 60.811 60.000 16.19 0.00 39.94 4.85
6995 7251 3.659183 ATGAATGCTGAGCTTAACCCT 57.341 42.857 5.83 0.00 0.00 4.34
7100 7356 5.041287 GCTTTGGTAGTTCACAGGTTTTTC 58.959 41.667 0.00 0.00 0.00 2.29
7132 7389 1.106351 AACCGCAGCATTGTTCACCA 61.106 50.000 0.00 0.00 0.00 4.17
7239 7497 3.028850 ACCAGCCCATTCTCAATTCATG 58.971 45.455 0.00 0.00 0.00 3.07
7297 7555 7.750229 AGGCTGGTACAAATGTATCATTATG 57.250 36.000 6.96 0.00 40.47 1.90
7600 7864 5.952526 AAAATCCCGTTGGTTAACTACAG 57.047 39.130 5.42 0.00 34.60 2.74
7601 7865 4.628963 AATCCCGTTGGTTAACTACAGT 57.371 40.909 5.42 0.00 34.60 3.55
7602 7866 5.743636 AATCCCGTTGGTTAACTACAGTA 57.256 39.130 5.42 0.00 34.60 2.74
7603 7867 4.519540 TCCCGTTGGTTAACTACAGTAC 57.480 45.455 5.42 0.00 34.60 2.73
7613 7877 6.438108 TGGTTAACTACAGTACTATGCTTCCA 59.562 38.462 5.42 0.00 0.00 3.53
7614 7878 6.755607 GGTTAACTACAGTACTATGCTTCCAC 59.244 42.308 5.42 0.00 0.00 4.02
7623 7887 6.701841 CAGTACTATGCTTCCACAATTCGTAT 59.298 38.462 0.00 0.00 0.00 3.06
7624 7888 7.224753 CAGTACTATGCTTCCACAATTCGTATT 59.775 37.037 0.00 0.00 0.00 1.89
7625 7889 7.769044 AGTACTATGCTTCCACAATTCGTATTT 59.231 33.333 0.00 0.00 0.00 1.40
7652 7916 7.962964 TTTTCTGTGACAAGGATAACTACAG 57.037 36.000 0.00 0.00 36.35 2.74
7733 7997 0.178975 AAACGGAACCAGCCCATTCA 60.179 50.000 0.00 0.00 0.00 2.57
7735 7999 1.002134 CGGAACCAGCCCATTCACT 60.002 57.895 0.00 0.00 0.00 3.41
7771 8035 6.406400 CGGAGAGGATTCTGTCTAACTGAAAT 60.406 42.308 0.00 0.00 39.05 2.17
7772 8036 6.983890 GGAGAGGATTCTGTCTAACTGAAATC 59.016 42.308 0.00 3.83 39.05 2.17
7773 8037 7.147742 GGAGAGGATTCTGTCTAACTGAAATCT 60.148 40.741 0.00 7.45 39.05 2.40
7774 8038 7.555087 AGAGGATTCTGTCTAACTGAAATCTG 58.445 38.462 3.95 0.00 39.05 2.90
7775 8039 7.180051 AGAGGATTCTGTCTAACTGAAATCTGT 59.820 37.037 3.95 1.91 39.05 3.41
7776 8040 7.684529 AGGATTCTGTCTAACTGAAATCTGTT 58.315 34.615 10.02 10.02 39.05 3.16
7777 8041 8.816894 AGGATTCTGTCTAACTGAAATCTGTTA 58.183 33.333 11.01 11.01 39.05 2.41
7786 8050 6.910536 AACTGAAATCTGTTAGGCTATTCG 57.089 37.500 0.00 0.00 36.47 3.34
7787 8051 4.811557 ACTGAAATCTGTTAGGCTATTCGC 59.188 41.667 0.00 0.00 38.13 4.70
7788 8052 4.765273 TGAAATCTGTTAGGCTATTCGCA 58.235 39.130 0.00 0.00 41.67 5.10
7789 8053 5.182487 TGAAATCTGTTAGGCTATTCGCAA 58.818 37.500 0.00 0.00 41.67 4.85
7790 8054 5.645929 TGAAATCTGTTAGGCTATTCGCAAA 59.354 36.000 0.00 0.00 41.67 3.68
7791 8055 6.150307 TGAAATCTGTTAGGCTATTCGCAAAA 59.850 34.615 0.00 0.00 41.67 2.44
7792 8056 6.509418 AATCTGTTAGGCTATTCGCAAAAA 57.491 33.333 0.00 0.00 41.67 1.94
7845 8109 3.814842 TGTATCATTATTCAGCTTGCCCG 59.185 43.478 0.00 0.00 0.00 6.13
7883 8151 5.367937 ACAAGTTAGGGAGCTATGATCATGT 59.632 40.000 18.72 2.60 0.00 3.21
7884 8152 6.554982 ACAAGTTAGGGAGCTATGATCATGTA 59.445 38.462 18.72 0.00 0.00 2.29
7902 8170 5.745514 CATGTACTCTTCACATGCATAAGC 58.254 41.667 0.00 0.00 44.78 3.09
7989 8258 5.069318 TGACCTCAGCATTGTTGTATTCAA 58.931 37.500 0.22 0.00 0.00 2.69
8032 8301 2.972713 GCCCCTCTTAGACATACCATCA 59.027 50.000 0.00 0.00 0.00 3.07
8065 8334 6.712095 GGAGACCAGCATCATTATTTATGACA 59.288 38.462 0.00 0.00 45.71 3.58
8067 8336 8.162878 AGACCAGCATCATTATTTATGACAAG 57.837 34.615 0.00 0.00 45.71 3.16
8074 8343 9.390795 GCATCATTATTTATGACAAGCTTGTAG 57.609 33.333 31.20 6.39 45.71 2.74
8177 8446 6.012658 TGTAAAATCTGAACTGCCATGAAC 57.987 37.500 0.00 0.00 0.00 3.18
8181 8450 3.213206 TCTGAACTGCCATGAACTTGT 57.787 42.857 0.00 0.00 0.00 3.16
8197 8466 7.773489 TGAACTTGTGGATGGAAAATGATAA 57.227 32.000 0.00 0.00 0.00 1.75
8198 8467 7.829725 TGAACTTGTGGATGGAAAATGATAAG 58.170 34.615 0.00 0.00 0.00 1.73
8199 8468 7.451255 TGAACTTGTGGATGGAAAATGATAAGT 59.549 33.333 0.00 0.00 0.00 2.24
8209 8478 9.956720 GATGGAAAATGATAAGTATCCAAGTTG 57.043 33.333 0.00 0.00 40.11 3.16
8210 8479 8.877864 TGGAAAATGATAAGTATCCAAGTTGT 57.122 30.769 1.45 0.00 34.21 3.32
8280 8549 3.019564 AGCTGGGTCTACATTTTCATGC 58.980 45.455 0.00 0.00 33.05 4.06
8302 8571 2.683968 TCACCATCGTGCTTACTGAAC 58.316 47.619 0.00 0.00 40.04 3.18
8316 8585 2.498167 ACTGAACATGTGGAGAAGTGC 58.502 47.619 0.00 0.00 0.00 4.40
8317 8586 1.808945 CTGAACATGTGGAGAAGTGCC 59.191 52.381 0.00 0.00 0.00 5.01
8381 8656 4.276183 TCGTATTGCACTTGCCTTGTTTTA 59.724 37.500 0.00 0.00 41.18 1.52
8386 8661 4.865776 TGCACTTGCCTTGTTTTACATAC 58.134 39.130 0.00 0.00 41.18 2.39
8395 8672 7.995289 TGCCTTGTTTTACATACCATATCAAG 58.005 34.615 0.00 0.00 0.00 3.02
8406 8708 4.164843 ACCATATCAAGCCATTTACGGT 57.835 40.909 0.00 0.00 0.00 4.83
8426 8728 1.542030 TGCACGTTGACTTTGTTTGGT 59.458 42.857 0.00 0.00 0.00 3.67
8432 8734 3.733380 CGTTGACTTTGTTTGGTGATGCA 60.733 43.478 0.00 0.00 0.00 3.96
8442 8744 1.774110 TGGTGATGCAACAAGGTGTT 58.226 45.000 0.00 0.00 42.08 3.32
8487 8789 1.528161 TGCGCATATGATTGAAGCTCG 59.472 47.619 5.66 0.00 0.00 5.03
8494 8796 0.601057 TGATTGAAGCTCGACGTCCA 59.399 50.000 10.58 0.00 0.00 4.02
8512 8814 3.317993 GTCCACGGCTGGCAAATATTATT 59.682 43.478 1.08 0.00 37.49 1.40
8534 8836 2.266554 GAAGCTCCGAGTGAATCAGTG 58.733 52.381 0.00 0.00 0.00 3.66
8540 8842 2.632996 TCCGAGTGAATCAGTGGAAAGT 59.367 45.455 1.50 0.00 0.00 2.66
8547 8849 4.693095 GTGAATCAGTGGAAAGTTCCTCTC 59.307 45.833 10.93 2.95 45.33 3.20
8548 8850 4.347876 TGAATCAGTGGAAAGTTCCTCTCA 59.652 41.667 10.93 0.35 45.33 3.27
8549 8851 3.753294 TCAGTGGAAAGTTCCTCTCAC 57.247 47.619 10.93 1.71 45.33 3.51
8550 8852 3.309296 TCAGTGGAAAGTTCCTCTCACT 58.691 45.455 10.93 3.83 45.33 3.41
8551 8853 3.322254 TCAGTGGAAAGTTCCTCTCACTC 59.678 47.826 10.93 0.00 45.33 3.51
8552 8854 2.297597 AGTGGAAAGTTCCTCTCACTCG 59.702 50.000 11.30 0.00 45.33 4.18
8553 8855 4.003709 AGTGGAAAGTTCCTCTCACTCGA 61.004 47.826 11.30 0.00 45.33 4.04
8554 8856 3.662247 GGAAAGTTCCTCTCACTCGAA 57.338 47.619 2.65 0.00 44.11 3.71
8555 8857 3.580731 GGAAAGTTCCTCTCACTCGAAG 58.419 50.000 2.65 0.00 44.11 3.79
8556 8858 2.734276 AAGTTCCTCTCACTCGAAGC 57.266 50.000 0.00 0.00 0.00 3.86
8557 8859 1.621992 AGTTCCTCTCACTCGAAGCA 58.378 50.000 0.00 0.00 0.00 3.91
8558 8860 1.271102 AGTTCCTCTCACTCGAAGCAC 59.729 52.381 0.00 0.00 0.00 4.40
8559 8861 0.603569 TTCCTCTCACTCGAAGCACC 59.396 55.000 0.00 0.00 0.00 5.01
8560 8862 0.539669 TCCTCTCACTCGAAGCACCA 60.540 55.000 0.00 0.00 0.00 4.17
8561 8863 0.108898 CCTCTCACTCGAAGCACCAG 60.109 60.000 0.00 0.00 0.00 4.00
8562 8864 0.884514 CTCTCACTCGAAGCACCAGA 59.115 55.000 0.00 0.00 0.00 3.86
8563 8865 0.598562 TCTCACTCGAAGCACCAGAC 59.401 55.000 0.00 0.00 0.00 3.51
8564 8866 0.389166 CTCACTCGAAGCACCAGACC 60.389 60.000 0.00 0.00 0.00 3.85
8565 8867 0.827925 TCACTCGAAGCACCAGACCT 60.828 55.000 0.00 0.00 0.00 3.85
8726 9051 0.533531 TTGCTGCTGGTGTCTGACAG 60.534 55.000 11.41 0.69 37.76 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.740737 GCTGCGCCAATTGTAATCCT 59.259 50.000 4.18 0.00 0.00 3.24
1 2 0.455410 TGCTGCGCCAATTGTAATCC 59.545 50.000 4.18 0.00 0.00 3.01
2 3 2.121786 CATGCTGCGCCAATTGTAATC 58.878 47.619 4.18 0.00 0.00 1.75
13 14 0.811616 AGCCTAGTAACATGCTGCGC 60.812 55.000 0.00 0.00 31.70 6.09
18 19 3.274288 AGAGCAAAGCCTAGTAACATGC 58.726 45.455 0.00 0.00 0.00 4.06
19 20 5.665459 AGTAGAGCAAAGCCTAGTAACATG 58.335 41.667 0.00 0.00 0.00 3.21
20 21 5.163395 GGAGTAGAGCAAAGCCTAGTAACAT 60.163 44.000 0.00 0.00 0.00 2.71
22 23 4.159879 TGGAGTAGAGCAAAGCCTAGTAAC 59.840 45.833 0.00 0.00 0.00 2.50
76 77 6.480651 TGTAATATGTATGTAGCGGGTTGTTG 59.519 38.462 0.00 0.00 0.00 3.33
78 79 5.987347 GTGTAATATGTATGTAGCGGGTTGT 59.013 40.000 0.00 0.00 0.00 3.32
84 85 4.089493 GGTGCGTGTAATATGTATGTAGCG 59.911 45.833 0.00 0.00 0.00 4.26
102 103 0.944386 GGCTGTATTATGTGGGTGCG 59.056 55.000 0.00 0.00 0.00 5.34
107 108 3.558931 TGTCAGGGCTGTATTATGTGG 57.441 47.619 0.00 0.00 0.00 4.17
114 115 2.991250 GACATGTTGTCAGGGCTGTAT 58.009 47.619 0.00 0.00 46.22 2.29
152 153 5.511234 AGATGATAGGCTTGTGAAATTGC 57.489 39.130 0.00 0.00 0.00 3.56
202 203 0.108138 AAGCACCGCTGATACAGACC 60.108 55.000 2.81 0.00 39.62 3.85
221 222 4.776435 TTGTGCTCATCATGGATTAGGA 57.224 40.909 0.00 0.00 0.00 2.94
225 226 3.084039 ACGTTTGTGCTCATCATGGATT 58.916 40.909 0.00 0.00 0.00 3.01
227 228 1.805943 CACGTTTGTGCTCATCATGGA 59.194 47.619 0.00 0.00 39.67 3.41
234 235 1.732941 ACTGTTCACGTTTGTGCTCA 58.267 45.000 0.00 0.00 46.01 4.26
258 259 0.239347 ATCTCGCTTGCTTGCACAAC 59.761 50.000 0.00 0.00 0.00 3.32
260 261 0.953727 AAATCTCGCTTGCTTGCACA 59.046 45.000 0.00 0.00 0.00 4.57
273 278 4.195416 GTGAGGAGAACCCATCAAATCTC 58.805 47.826 0.00 0.00 38.04 2.75
317 322 6.197096 CCACAAGATGTTTCTTTCTTTCAACG 59.803 38.462 0.00 0.00 40.28 4.10
322 327 5.351458 GCACCACAAGATGTTTCTTTCTTT 58.649 37.500 0.00 0.00 40.28 2.52
372 378 1.218316 GCCACGTACCCTCCTGAAG 59.782 63.158 0.00 0.00 0.00 3.02
422 428 1.963338 GCAGTGTGGAGTGTGGAGC 60.963 63.158 0.00 0.00 0.00 4.70
492 501 3.065306 CTGTGGGCGTTGGAGGTA 58.935 61.111 0.00 0.00 0.00 3.08
536 545 1.893801 CTTCTGGAACGAGGTGGTAGT 59.106 52.381 0.00 0.00 0.00 2.73
537 546 1.404315 GCTTCTGGAACGAGGTGGTAG 60.404 57.143 0.00 0.00 0.00 3.18
551 560 3.976793 ATCATTAATGGCGTGCTTCTG 57.023 42.857 15.36 0.00 0.00 3.02
563 572 4.695455 CCGCGTGGGAGATTAATCATTAAT 59.305 41.667 17.56 2.01 36.88 1.40
564 573 4.062293 CCGCGTGGGAGATTAATCATTAA 58.938 43.478 17.56 0.00 38.47 1.40
565 574 3.659786 CCGCGTGGGAGATTAATCATTA 58.340 45.455 17.56 0.00 38.47 1.90
566 575 2.494059 CCGCGTGGGAGATTAATCATT 58.506 47.619 17.56 0.00 38.47 2.57
567 576 1.878102 GCCGCGTGGGAGATTAATCAT 60.878 52.381 18.41 2.94 38.47 2.45
568 577 0.531974 GCCGCGTGGGAGATTAATCA 60.532 55.000 18.41 0.00 38.47 2.57
569 578 1.557443 CGCCGCGTGGGAGATTAATC 61.557 60.000 18.41 7.41 37.92 1.75
597 606 5.247337 TGATGAAAAATAGGTTGGGGTTTCC 59.753 40.000 0.00 0.00 0.00 3.13
626 640 1.741770 GCGTAGTGTTGGAGGGCTG 60.742 63.158 0.00 0.00 0.00 4.85
635 649 0.315886 TGTCATCGTGGCGTAGTGTT 59.684 50.000 0.00 0.00 0.00 3.32
648 662 2.511600 CGGGTCCCGCTTGTCATC 60.512 66.667 19.48 0.00 41.17 2.92
667 681 4.785512 AGACGGCGCTTCTGCTCG 62.786 66.667 6.90 2.29 38.64 5.03
713 727 2.187707 CATTTTAGCATTGACGCTGCC 58.812 47.619 0.00 0.00 43.68 4.85
714 728 2.187707 CCATTTTAGCATTGACGCTGC 58.812 47.619 0.00 0.00 43.68 5.25
718 732 3.416277 CACGACCATTTTAGCATTGACG 58.584 45.455 0.00 0.00 0.00 4.35
733 747 1.838568 GAAAGGTTCCGTGCACGACC 61.839 60.000 39.10 35.06 43.02 4.79
755 776 1.945169 CTCTCTGCGCGCTCTCATG 60.945 63.158 33.29 15.58 0.00 3.07
863 892 3.007920 ACTGCTGGAGCCTGGAGG 61.008 66.667 16.79 0.00 41.18 4.30
879 908 2.846039 TTCTCTTATGACGAGGCGAC 57.154 50.000 0.00 0.00 0.00 5.19
1029 1058 4.767255 GAGCAGGCGGTGGACCAG 62.767 72.222 0.00 0.00 35.14 4.00
1272 1301 1.300233 GCTTACCCGCGAGAGATGG 60.300 63.158 8.23 0.20 0.00 3.51
1401 1432 8.018520 TGTTACCATTGAGTTACAAATAAAGCG 58.981 33.333 0.00 0.00 42.03 4.68
1429 1463 5.265350 TGGCCATGAACATGACATTATTG 57.735 39.130 15.21 0.00 41.20 1.90
1457 1491 4.201910 CCTTTTCGAGAAGCACAGAACAAA 60.202 41.667 10.12 0.00 0.00 2.83
1459 1493 2.872245 CCTTTTCGAGAAGCACAGAACA 59.128 45.455 10.12 0.00 0.00 3.18
1462 1496 3.469008 TTCCTTTTCGAGAAGCACAGA 57.531 42.857 10.12 0.00 0.00 3.41
1464 1498 3.804036 TCTTTCCTTTTCGAGAAGCACA 58.196 40.909 10.12 0.00 0.00 4.57
1497 1531 7.118496 TCAGGTAATTCTTTTTCCTGCAAAA 57.882 32.000 6.23 0.00 43.49 2.44
1509 1543 9.793259 TTGAGACAAACTAATCAGGTAATTCTT 57.207 29.630 0.00 0.00 0.00 2.52
1593 1627 5.458948 CCCCTCCCAATTTGGCTACATATTA 60.459 44.000 10.10 0.00 35.79 0.98
1617 1651 1.490490 TCACCTATTCTGACCATGCCC 59.510 52.381 0.00 0.00 0.00 5.36
1619 1653 4.348863 AGATCACCTATTCTGACCATGC 57.651 45.455 0.00 0.00 0.00 4.06
1628 1662 5.237344 CCGAATCCAACAAGATCACCTATTC 59.763 44.000 0.00 0.00 0.00 1.75
1667 1701 4.038642 ACATGTTGAAATGTTAAAGCCGGT 59.961 37.500 1.90 0.00 37.50 5.28
1718 1752 6.704050 GGTTTTGCCATAGTTTAGCAGAAAAA 59.296 34.615 0.00 0.00 37.89 1.94
1741 1775 5.461032 TTCTTCGCCACAATTTTAATGGT 57.539 34.783 0.00 0.00 35.79 3.55
1751 1785 2.801342 GCAACCAATTTCTTCGCCACAA 60.801 45.455 0.00 0.00 0.00 3.33
1776 1810 0.923358 TTGTTCCACTCCCACAGGTT 59.077 50.000 0.00 0.00 0.00 3.50
1855 1889 5.089970 TGCAGTAGTCAGCATGTTCTATT 57.910 39.130 0.00 0.00 35.51 1.73
1877 1911 4.039488 TCAACAGAGCAAAAGCCAATGATT 59.961 37.500 0.00 0.00 0.00 2.57
1884 1918 1.065551 ACGTTCAACAGAGCAAAAGCC 59.934 47.619 0.00 0.00 0.00 4.35
1885 1919 2.475200 ACGTTCAACAGAGCAAAAGC 57.525 45.000 0.00 0.00 0.00 3.51
1891 1925 4.559251 CAGTGATACTACGTTCAACAGAGC 59.441 45.833 0.00 0.00 0.00 4.09
1898 1932 3.006003 TGGTTGCAGTGATACTACGTTCA 59.994 43.478 0.00 0.00 0.00 3.18
1903 1937 3.933332 GGACTTGGTTGCAGTGATACTAC 59.067 47.826 0.00 0.00 0.00 2.73
1912 1946 1.021202 TTTGACGGACTTGGTTGCAG 58.979 50.000 0.00 0.00 0.00 4.41
1913 1947 1.686355 ATTTGACGGACTTGGTTGCA 58.314 45.000 0.00 0.00 0.00 4.08
1928 1962 4.447290 TGTCATGGTGGGTACGATATTTG 58.553 43.478 0.00 0.00 0.00 2.32
1936 1970 3.627395 TCATTCTGTCATGGTGGGTAC 57.373 47.619 0.00 0.00 0.00 3.34
2079 2120 1.797025 AACTAACACTTCGAGGCAGC 58.203 50.000 0.00 0.00 0.00 5.25
2175 2216 6.040247 TGTATCGTAGCTGTCCACAAAATAG 58.960 40.000 0.00 0.00 0.00 1.73
2343 2384 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2344 2385 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2345 2386 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2346 2387 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2347 2388 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2348 2389 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2349 2390 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2350 2391 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2351 2392 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2352 2393 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2353 2394 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2354 2395 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2362 2403 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2363 2404 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2365 2406 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2366 2407 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2373 2414 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
2374 2415 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
2375 2416 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
2376 2417 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
2377 2418 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
2378 2419 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
2379 2420 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
2380 2421 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
2381 2422 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
2382 2423 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
2383 2424 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
2384 2425 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
2385 2426 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
2386 2427 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
2387 2428 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
2397 2438 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
2398 2439 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
2399 2440 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
2400 2441 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
2417 2458 9.346005 TGTTAGATTTGTCTAGATACGGATGTA 57.654 33.333 0.00 0.00 34.45 2.29
2418 2459 8.136165 GTGTTAGATTTGTCTAGATACGGATGT 58.864 37.037 0.00 0.00 0.00 3.06
2419 2460 8.135529 TGTGTTAGATTTGTCTAGATACGGATG 58.864 37.037 0.00 0.00 0.00 3.51
2420 2461 8.234136 TGTGTTAGATTTGTCTAGATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
2421 2462 7.634671 TGTGTTAGATTTGTCTAGATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
2422 2463 8.188799 TCTTGTGTTAGATTTGTCTAGATACGG 58.811 37.037 0.00 0.00 0.00 4.02
2423 2464 9.569167 TTCTTGTGTTAGATTTGTCTAGATACG 57.431 33.333 0.00 0.00 0.00 3.06
2430 2471 8.143835 CCCAAAATTCTTGTGTTAGATTTGTCT 58.856 33.333 0.00 0.00 28.79 3.41
2431 2472 8.141268 TCCCAAAATTCTTGTGTTAGATTTGTC 58.859 33.333 0.00 0.00 28.79 3.18
2432 2473 7.926018 GTCCCAAAATTCTTGTGTTAGATTTGT 59.074 33.333 0.00 0.00 28.79 2.83
2433 2474 7.114811 CGTCCCAAAATTCTTGTGTTAGATTTG 59.885 37.037 0.00 0.00 29.84 2.32
2434 2475 7.145323 CGTCCCAAAATTCTTGTGTTAGATTT 58.855 34.615 0.00 0.00 0.00 2.17
2435 2476 6.294508 CCGTCCCAAAATTCTTGTGTTAGATT 60.295 38.462 0.00 0.00 0.00 2.40
2436 2477 5.183140 CCGTCCCAAAATTCTTGTGTTAGAT 59.817 40.000 0.00 0.00 0.00 1.98
2437 2478 4.517453 CCGTCCCAAAATTCTTGTGTTAGA 59.483 41.667 0.00 0.00 0.00 2.10
2438 2479 4.517453 TCCGTCCCAAAATTCTTGTGTTAG 59.483 41.667 0.00 0.00 0.00 2.34
2439 2480 4.462133 TCCGTCCCAAAATTCTTGTGTTA 58.538 39.130 0.00 0.00 0.00 2.41
2440 2481 3.292460 TCCGTCCCAAAATTCTTGTGTT 58.708 40.909 0.00 0.00 0.00 3.32
2441 2482 2.884639 CTCCGTCCCAAAATTCTTGTGT 59.115 45.455 0.00 0.00 0.00 3.72
2442 2483 2.228822 CCTCCGTCCCAAAATTCTTGTG 59.771 50.000 0.00 0.00 0.00 3.33
2443 2484 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2444 2485 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2445 2486 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2446 2487 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2447 2488 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2448 2489 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2449 2490 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2450 2491 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2451 2492 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2452 2493 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2453 2494 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2454 2495 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
2455 2496 4.081254 ACAAATTTAGTACTCCCTCCGTCC 60.081 45.833 0.00 0.00 0.00 4.79
2456 2497 5.082251 ACAAATTTAGTACTCCCTCCGTC 57.918 43.478 0.00 0.00 0.00 4.79
2457 2498 5.494390 AACAAATTTAGTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
2458 2499 7.910441 TTAAACAAATTTAGTACTCCCTCCG 57.090 36.000 0.00 0.00 31.90 4.63
2459 2500 9.293404 ACTTTAAACAAATTTAGTACTCCCTCC 57.707 33.333 0.00 0.00 31.90 4.30
2645 2686 5.536554 AATTCACAGAACATAACTCAGCG 57.463 39.130 0.00 0.00 0.00 5.18
2646 2687 7.750903 GGTAAAATTCACAGAACATAACTCAGC 59.249 37.037 0.00 0.00 0.00 4.26
2757 2798 0.677731 CATCGGAACCTGTGGCACAT 60.678 55.000 22.35 6.31 44.52 3.21
3005 3046 1.110442 CTCCCAACAGTTTTGCCACA 58.890 50.000 0.00 0.00 0.00 4.17
3059 3100 2.286872 CAACCTGCTATGAGCTCAAGG 58.713 52.381 24.57 24.57 42.97 3.61
3102 3143 4.385825 AGATTAAACAGAACCGTGCTTCA 58.614 39.130 0.00 0.00 0.00 3.02
3103 3144 5.147162 CAAGATTAAACAGAACCGTGCTTC 58.853 41.667 0.00 0.00 0.00 3.86
3141 3182 5.451908 CACAACGTCAAAGCACAGATAAAT 58.548 37.500 0.00 0.00 0.00 1.40
3266 3310 5.065731 CACTTGCTCTCTTGAAAGAACTGTT 59.934 40.000 0.00 0.00 34.03 3.16
3360 3404 2.094854 CCAAGTGAAGGATGCAGAAAGC 60.095 50.000 0.00 0.00 45.96 3.51
3789 3833 8.509690 CAGAGCAAAACATTTCTGAGAAGAATA 58.490 33.333 0.00 0.00 39.46 1.75
3806 3850 3.430042 AGCTTCAGATCCAGAGCAAAA 57.570 42.857 12.55 0.00 0.00 2.44
3834 3878 3.795623 ATGATGCAAATGACTGAAGGC 57.204 42.857 0.00 0.00 0.00 4.35
4123 4171 0.393820 TAACACGCCCTTTCCGAAGT 59.606 50.000 0.00 0.00 0.00 3.01
4154 4202 0.697658 TTGATCCAGTGGATGTGCCA 59.302 50.000 29.60 17.37 43.27 4.92
4320 4371 2.945440 GCATTCCCTACACAAGCCATCA 60.945 50.000 0.00 0.00 0.00 3.07
4461 4512 8.634335 TGGATCAGAAAATTCTTTCACATACA 57.366 30.769 0.00 0.00 42.99 2.29
4506 4557 3.005684 TCCAACCAGCAAAAGCAGTTATG 59.994 43.478 0.00 0.00 0.00 1.90
4617 4668 3.244078 ACTGCTAACAACCGAACTCATCA 60.244 43.478 0.00 0.00 0.00 3.07
4618 4669 3.326747 ACTGCTAACAACCGAACTCATC 58.673 45.455 0.00 0.00 0.00 2.92
4620 4671 2.902705 ACTGCTAACAACCGAACTCA 57.097 45.000 0.00 0.00 0.00 3.41
4644 4695 3.470645 AGTCTTTGAGTACGGTTTGCT 57.529 42.857 0.00 0.00 0.00 3.91
4666 4717 4.201881 ACAAACAGAACAAAGTTCCTACGC 60.202 41.667 6.29 0.00 0.00 4.42
4801 5000 2.091610 TCTCTCATGGCAGCCTACTAGT 60.092 50.000 14.15 0.00 0.00 2.57
4820 5019 8.943085 AGGTGATGATAAAATCCTACAGATTCT 58.057 33.333 0.00 0.00 44.75 2.40
4837 5036 5.649395 CCATTGACAAACACTAGGTGATGAT 59.351 40.000 4.62 0.00 36.96 2.45
4923 5123 1.271597 GGGGCAACTGATCAGAACTGT 60.272 52.381 29.27 4.03 0.00 3.55
4958 5158 2.036089 GTGGAAAAGACGAGAGGACAGT 59.964 50.000 0.00 0.00 0.00 3.55
5071 5271 8.543774 GTGTGTGCATAGAAGATAAATCTACAC 58.456 37.037 10.76 10.76 37.14 2.90
5106 5306 6.669977 GCACTGTGCTAGTTTATAAGAACACG 60.670 42.308 24.68 0.00 40.96 4.49
5116 5316 4.391830 GCTGTATTGCACTGTGCTAGTTTA 59.608 41.667 30.43 12.19 45.31 2.01
5193 5412 7.070183 GCTAGCGGTTAATATAAAAGACAAGC 58.930 38.462 0.00 0.00 0.00 4.01
5508 5729 7.172342 TGGCATAGTCTTAGGTTTGTACATTT 58.828 34.615 0.00 0.00 0.00 2.32
5529 5750 0.324738 TGTGGTCTGGGTTTTTGGCA 60.325 50.000 0.00 0.00 0.00 4.92
5711 5932 5.544176 AGAGAGACACCCAAAATAGTTCAGA 59.456 40.000 0.00 0.00 0.00 3.27
5713 5934 5.825593 AGAGAGACACCCAAAATAGTTCA 57.174 39.130 0.00 0.00 0.00 3.18
6311 6560 7.417116 GCATTACACTCTTTCCATGGATTTGAT 60.417 37.037 17.06 0.00 0.00 2.57
6425 6674 8.246430 AGATCGTCCCAACTCATAGTTAATTA 57.754 34.615 0.00 0.00 36.03 1.40
6480 6729 1.021202 CACGGGAAGCAACAGTCAAA 58.979 50.000 0.00 0.00 0.00 2.69
6524 6773 5.187772 TGTCTGTATGCATCACTAGGTTCTT 59.812 40.000 0.19 0.00 0.00 2.52
6547 6796 4.156664 CAGCTTCTGGAAACTTGTCATG 57.843 45.455 0.00 0.00 0.00 3.07
6593 6842 7.339212 CACCATTATTTGAATGAGGTAACCTGA 59.661 37.037 0.00 0.00 31.76 3.86
6636 6885 0.038067 TTGTACACGTGTGATCCGGG 60.038 55.000 30.83 0.00 34.16 5.73
7024 7280 4.698780 ACGTTTTTACTTTGATCTAGCCCC 59.301 41.667 0.00 0.00 0.00 5.80
7057 7313 8.028938 CCAAAGCATAGTAATTAGCAAACAAGT 58.971 33.333 0.00 0.00 0.00 3.16
7066 7322 9.378551 TGTGAACTACCAAAGCATAGTAATTAG 57.621 33.333 0.00 0.00 31.30 1.73
7100 7356 2.159653 GCTGCGGTTATCTTTGTCACAG 60.160 50.000 0.00 0.00 0.00 3.66
7170 7428 2.238395 TGCATGGCATAGTGACACCTAA 59.762 45.455 0.00 0.00 38.83 2.69
7239 7497 1.830477 AGACAGAATCCTCTCCACTGC 59.170 52.381 0.00 0.00 32.67 4.40
7297 7555 1.303970 AAGGAAGAGGCCAAGCTGC 60.304 57.895 5.01 0.00 0.00 5.25
7444 7703 7.595819 AAACCTAATGAACTTTCCACATGAA 57.404 32.000 0.00 0.00 0.00 2.57
7483 7742 5.775686 TCATTCTTCATTTGGAACAGCAAG 58.224 37.500 0.00 0.00 42.39 4.01
7581 7840 4.774200 AGTACTGTAGTTAACCAACGGGAT 59.226 41.667 17.38 4.90 39.78 3.85
7585 7844 6.327934 AGCATAGTACTGTAGTTAACCAACG 58.672 40.000 5.39 1.42 39.78 4.10
7599 7863 5.086104 ACGAATTGTGGAAGCATAGTACT 57.914 39.130 0.00 0.00 0.00 2.73
7600 7864 7.478520 AATACGAATTGTGGAAGCATAGTAC 57.521 36.000 0.00 0.00 0.00 2.73
7601 7865 8.500753 AAAATACGAATTGTGGAAGCATAGTA 57.499 30.769 0.00 0.00 0.00 1.82
7602 7866 7.391148 AAAATACGAATTGTGGAAGCATAGT 57.609 32.000 0.00 0.00 0.00 2.12
7652 7916 3.578688 CAAAGCAAATAGGGAACAGTGC 58.421 45.455 0.00 0.00 0.00 4.40
7733 7997 2.091278 TCCTCTCCGGTGGATGAATAGT 60.091 50.000 0.00 0.00 31.08 2.12
7735 7999 2.767644 TCCTCTCCGGTGGATGAATA 57.232 50.000 0.00 0.00 31.08 1.75
7791 8055 4.580580 AGCGTCACAGATTTCCTTCTTTTT 59.419 37.500 0.00 0.00 0.00 1.94
7792 8056 4.023707 CAGCGTCACAGATTTCCTTCTTTT 60.024 41.667 0.00 0.00 0.00 2.27
7793 8057 3.499918 CAGCGTCACAGATTTCCTTCTTT 59.500 43.478 0.00 0.00 0.00 2.52
7794 8058 3.070018 CAGCGTCACAGATTTCCTTCTT 58.930 45.455 0.00 0.00 0.00 2.52
7795 8059 2.613977 CCAGCGTCACAGATTTCCTTCT 60.614 50.000 0.00 0.00 0.00 2.85
7796 8060 1.734465 CCAGCGTCACAGATTTCCTTC 59.266 52.381 0.00 0.00 0.00 3.46
7797 8061 1.072331 ACCAGCGTCACAGATTTCCTT 59.928 47.619 0.00 0.00 0.00 3.36
7798 8062 0.687354 ACCAGCGTCACAGATTTCCT 59.313 50.000 0.00 0.00 0.00 3.36
7799 8063 2.000447 GTACCAGCGTCACAGATTTCC 59.000 52.381 0.00 0.00 0.00 3.13
7800 8064 2.683968 TGTACCAGCGTCACAGATTTC 58.316 47.619 0.00 0.00 0.00 2.17
7801 8065 2.831685 TGTACCAGCGTCACAGATTT 57.168 45.000 0.00 0.00 0.00 2.17
7802 8066 2.831685 TTGTACCAGCGTCACAGATT 57.168 45.000 0.00 0.00 0.00 2.40
7803 8067 2.831685 TTTGTACCAGCGTCACAGAT 57.168 45.000 0.00 0.00 0.00 2.90
7804 8068 2.224185 ACATTTGTACCAGCGTCACAGA 60.224 45.455 0.00 0.00 0.00 3.41
7809 8073 5.734855 AATGATACATTTGTACCAGCGTC 57.265 39.130 0.00 0.00 32.72 5.19
7811 8075 7.860613 TGAATAATGATACATTTGTACCAGCG 58.139 34.615 2.40 0.00 32.72 5.18
7845 8109 7.723324 TCCCTAACTTGTATATGTACAGAAGC 58.277 38.462 0.33 0.00 41.56 3.86
7883 8151 5.598417 TCCTAGCTTATGCATGTGAAGAGTA 59.402 40.000 10.16 0.54 42.74 2.59
7884 8152 4.406972 TCCTAGCTTATGCATGTGAAGAGT 59.593 41.667 10.16 0.00 42.74 3.24
7902 8170 3.027412 TGCTCCTTCTACAGCTTCCTAG 58.973 50.000 0.00 0.00 36.53 3.02
7919 8187 2.282180 TCGTTTGGGCCCTTGCTC 60.282 61.111 25.70 8.08 38.98 4.26
7989 8258 1.689273 CGCCCTAGCTATCAGGAAAGT 59.311 52.381 2.33 0.00 34.91 2.66
8047 8316 8.004087 ACAAGCTTGTCATAAATAATGATGCT 57.996 30.769 26.36 0.00 46.21 3.79
8067 8336 9.937175 CAGAGGCTTTAATTTAATACTACAAGC 57.063 33.333 0.00 0.00 35.66 4.01
8074 8343 8.276252 TGACACCAGAGGCTTTAATTTAATAC 57.724 34.615 0.00 0.00 0.00 1.89
8077 8346 6.775629 AGTTGACACCAGAGGCTTTAATTTAA 59.224 34.615 0.00 0.00 0.00 1.52
8177 8446 8.571336 GGATACTTATCATTTTCCATCCACAAG 58.429 37.037 0.00 0.00 34.40 3.16
8181 8450 8.281531 ACTTGGATACTTATCATTTTCCATCCA 58.718 33.333 0.00 0.00 39.06 3.41
8280 8549 2.892374 TCAGTAAGCACGATGGTGATG 58.108 47.619 12.54 2.18 43.10 3.07
8302 8571 2.422479 CAGAATGGCACTTCTCCACATG 59.578 50.000 8.57 0.00 36.26 3.21
8316 8585 4.768968 AGGAAATTCCACAGTTCAGAATGG 59.231 41.667 15.21 0.00 39.61 3.16
8317 8586 5.709164 AGAGGAAATTCCACAGTTCAGAATG 59.291 40.000 15.21 0.00 39.61 2.67
8351 8626 2.843077 CAAGTGCAATACGAGCAACAG 58.157 47.619 0.00 0.00 44.64 3.16
8381 8656 5.705441 CCGTAAATGGCTTGATATGGTATGT 59.295 40.000 0.00 0.00 0.00 2.29
8386 8661 3.304659 GCACCGTAAATGGCTTGATATGG 60.305 47.826 0.00 0.00 0.00 2.74
8406 8708 1.542030 ACCAAACAAAGTCAACGTGCA 59.458 42.857 0.00 0.00 0.00 4.57
8426 8728 2.884012 CACCTAACACCTTGTTGCATCA 59.116 45.455 1.73 0.00 41.30 3.07
8432 8734 3.046374 AGAGGTCACCTAACACCTTGTT 58.954 45.455 0.00 0.00 43.52 2.83
8442 8744 0.041238 CCTGGTCCAGAGGTCACCTA 59.959 60.000 21.23 0.00 31.76 3.08
8494 8796 3.561143 TCCAATAATATTTGCCAGCCGT 58.439 40.909 0.00 0.00 0.00 5.68
8501 8803 5.239525 ACTCGGAGCTTCCAATAATATTTGC 59.760 40.000 4.58 0.00 35.91 3.68
8512 8814 1.205655 CTGATTCACTCGGAGCTTCCA 59.794 52.381 4.58 0.00 35.91 3.53
8540 8842 0.603569 GGTGCTTCGAGTGAGAGGAA 59.396 55.000 0.00 0.00 0.00 3.36
8546 8848 0.827925 AGGTCTGGTGCTTCGAGTGA 60.828 55.000 0.00 0.00 0.00 3.41
8547 8849 0.034059 AAGGTCTGGTGCTTCGAGTG 59.966 55.000 0.00 0.00 0.00 3.51
8548 8850 0.318762 GAAGGTCTGGTGCTTCGAGT 59.681 55.000 0.00 0.00 0.00 4.18
8549 8851 0.318441 TGAAGGTCTGGTGCTTCGAG 59.682 55.000 0.00 0.00 0.00 4.04
8550 8852 0.033504 GTGAAGGTCTGGTGCTTCGA 59.966 55.000 0.00 0.00 0.00 3.71
8551 8853 0.034059 AGTGAAGGTCTGGTGCTTCG 59.966 55.000 0.00 0.00 0.00 3.79
8552 8854 1.802069 GAGTGAAGGTCTGGTGCTTC 58.198 55.000 0.00 0.00 0.00 3.86
8553 8855 0.034059 CGAGTGAAGGTCTGGTGCTT 59.966 55.000 0.00 0.00 0.00 3.91
8554 8856 1.668294 CGAGTGAAGGTCTGGTGCT 59.332 57.895 0.00 0.00 0.00 4.40
8555 8857 2.029844 GCGAGTGAAGGTCTGGTGC 61.030 63.158 0.00 0.00 0.00 5.01
8556 8858 0.389166 GAGCGAGTGAAGGTCTGGTG 60.389 60.000 0.00 0.00 33.73 4.17
8557 8859 0.540830 AGAGCGAGTGAAGGTCTGGT 60.541 55.000 0.00 0.00 43.78 4.00
8558 8860 0.172352 GAGAGCGAGTGAAGGTCTGG 59.828 60.000 2.52 0.00 45.20 3.86
8559 8861 0.884514 TGAGAGCGAGTGAAGGTCTG 59.115 55.000 2.52 0.00 45.20 3.51
8561 8863 1.202359 GGATGAGAGCGAGTGAAGGTC 60.202 57.143 0.00 0.00 36.46 3.85
8562 8864 0.820871 GGATGAGAGCGAGTGAAGGT 59.179 55.000 0.00 0.00 0.00 3.50
8563 8865 0.820226 TGGATGAGAGCGAGTGAAGG 59.180 55.000 0.00 0.00 0.00 3.46
8564 8866 1.476085 AGTGGATGAGAGCGAGTGAAG 59.524 52.381 0.00 0.00 0.00 3.02
8565 8867 1.550327 AGTGGATGAGAGCGAGTGAA 58.450 50.000 0.00 0.00 0.00 3.18
8634 8956 3.870274 TGTCAGAGAGGATTGAATGCAG 58.130 45.455 0.00 0.00 0.00 4.41
8635 8957 3.516700 TCTGTCAGAGAGGATTGAATGCA 59.483 43.478 0.00 0.00 0.00 3.96
8726 9051 1.112113 TATCCTCGTCACCTTCTGGC 58.888 55.000 0.00 0.00 36.63 4.85
8732 9057 1.043673 GGGCTGTATCCTCGTCACCT 61.044 60.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.