Multiple sequence alignment - TraesCS3A01G395100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G395100 chr3A 100.000 9937 0 0 1 9937 642359790 642349854 0.000000e+00 18351
1 TraesCS3A01G395100 chr3A 79.234 1358 221 37 6630 7950 240376431 240377764 0.000000e+00 889
2 TraesCS3A01G395100 chr3A 79.516 703 107 31 2815 3497 240365452 240366137 5.440000e-127 466
3 TraesCS3A01G395100 chr3B 93.019 7320 395 55 2564 9832 665454661 665447407 0.000000e+00 10580
4 TraesCS3A01G395100 chr3B 89.124 1370 82 31 1 1355 665458820 665457503 0.000000e+00 1642
5 TraesCS3A01G395100 chr3B 79.540 1349 207 39 6649 7956 267231602 267230282 0.000000e+00 898
6 TraesCS3A01G395100 chr3B 85.239 481 46 14 1532 1999 665455783 665455315 1.170000e-128 472
7 TraesCS3A01G395100 chr3B 77.309 877 147 41 2651 3497 267232994 267232140 4.200000e-128 470
8 TraesCS3A01G395100 chr3B 93.125 320 22 0 2029 2348 665455326 665455007 4.200000e-128 470
9 TraesCS3A01G395100 chr3B 88.202 356 25 10 2346 2697 665454927 665454585 9.290000e-110 409
10 TraesCS3A01G395100 chr3B 89.720 107 11 0 6005 6111 581966093 581965987 4.840000e-28 137
11 TraesCS3A01G395100 chr3B 96.667 60 1 1 2564 2622 665454600 665454541 2.280000e-16 99
12 TraesCS3A01G395100 chr3D 89.339 5797 478 65 4093 9827 504039260 504033542 0.000000e+00 7153
13 TraesCS3A01G395100 chr3D 90.319 1942 170 13 2169 4098 504041236 504039301 0.000000e+00 2529
14 TraesCS3A01G395100 chr3D 90.132 1216 62 17 78 1264 504045475 504044289 0.000000e+00 1528
15 TraesCS3A01G395100 chr3D 86.549 565 41 14 1450 1995 504041882 504041334 3.090000e-164 590
16 TraesCS3A01G395100 chr3D 81.109 667 102 17 7300 7956 186612211 186611559 6.880000e-141 512
17 TraesCS3A01G395100 chr3D 77.397 876 146 43 2651 3497 186614292 186613440 3.250000e-129 473
18 TraesCS3A01G395100 chr3D 94.949 99 4 1 1264 1362 504044257 504044160 4.810000e-33 154
19 TraesCS3A01G395100 chr4A 77.255 1253 240 33 6634 7863 614162767 614163997 0.000000e+00 693
20 TraesCS3A01G395100 chr4A 79.383 713 97 34 2802 3494 614161531 614162213 3.270000e-124 457
21 TraesCS3A01G395100 chr4A 77.376 526 92 21 8457 8961 614402254 614401735 4.540000e-73 287
22 TraesCS3A01G395100 chr5B 77.136 1264 231 42 6634 7863 696205960 696207199 0.000000e+00 680
23 TraesCS3A01G395100 chr5B 83.437 483 66 9 3019 3494 696204930 696205405 4.260000e-118 436
24 TraesCS3A01G395100 chr5B 80.847 496 73 18 3011 3494 696288640 696289125 4.380000e-98 370
25 TraesCS3A01G395100 chr5B 82.308 130 19 3 5986 6113 541526672 541526799 1.060000e-19 110
26 TraesCS3A01G395100 chr5D 76.796 905 144 40 2627 3494 554400121 554399246 1.970000e-121 448
27 TraesCS3A01G395100 chr5D 83.333 294 46 3 7572 7863 554397159 554396867 1.650000e-67 268
28 TraesCS3A01G395100 chr5D 77.465 284 46 13 8457 8726 553962231 553962510 4.810000e-33 154
29 TraesCS3A01G395100 chr1B 88.889 108 12 0 6008 6115 58802753 58802646 6.260000e-27 134
30 TraesCS3A01G395100 chr2D 87.273 110 14 0 6005 6114 480566681 480566572 1.050000e-24 126
31 TraesCS3A01G395100 chr2D 86.364 110 15 0 6005 6114 473292305 473292196 4.870000e-23 121
32 TraesCS3A01G395100 chr6D 86.087 115 15 1 6002 6115 391925989 391925875 1.360000e-23 122
33 TraesCS3A01G395100 chr2A 85.714 112 15 1 6002 6112 727238776 727238665 6.310000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G395100 chr3A 642349854 642359790 9936 True 18351.000000 18351 100.0000 1 9937 1 chr3A.!!$R1 9936
1 TraesCS3A01G395100 chr3A 240376431 240377764 1333 False 889.000000 889 79.2340 6630 7950 1 chr3A.!!$F2 1320
2 TraesCS3A01G395100 chr3A 240365452 240366137 685 False 466.000000 466 79.5160 2815 3497 1 chr3A.!!$F1 682
3 TraesCS3A01G395100 chr3B 665447407 665458820 11413 True 2278.666667 10580 90.8960 1 9832 6 chr3B.!!$R3 9831
4 TraesCS3A01G395100 chr3B 267230282 267232994 2712 True 684.000000 898 78.4245 2651 7956 2 chr3B.!!$R2 5305
5 TraesCS3A01G395100 chr3D 504033542 504045475 11933 True 2390.800000 7153 90.2576 78 9827 5 chr3D.!!$R2 9749
6 TraesCS3A01G395100 chr3D 186611559 186614292 2733 True 492.500000 512 79.2530 2651 7956 2 chr3D.!!$R1 5305
7 TraesCS3A01G395100 chr4A 614161531 614163997 2466 False 575.000000 693 78.3190 2802 7863 2 chr4A.!!$F1 5061
8 TraesCS3A01G395100 chr4A 614401735 614402254 519 True 287.000000 287 77.3760 8457 8961 1 chr4A.!!$R1 504
9 TraesCS3A01G395100 chr5B 696204930 696207199 2269 False 558.000000 680 80.2865 3019 7863 2 chr5B.!!$F3 4844
10 TraesCS3A01G395100 chr5D 554396867 554400121 3254 True 358.000000 448 80.0645 2627 7863 2 chr5D.!!$R1 5236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 778 0.105964 TCCCGTGTGTTGAGTCTTGG 59.894 55.0 0.00 0.00 0.00 3.61 F
1399 1499 0.040646 ACGTCACTCCATCACCCCTA 59.959 55.0 0.00 0.00 0.00 3.53 F
2390 4894 0.249657 GTCTCATGATCGGCCTGGAC 60.250 60.0 0.00 0.00 0.00 4.02 F
3256 5861 0.328258 ACCTTGTTCGGCCTTAGCAT 59.672 50.0 0.00 0.00 42.56 3.79 F
4113 6778 0.394565 ATATGCTCCGAAGTGGCCTC 59.605 55.0 3.32 0.00 37.80 4.70 F
5472 8173 0.179000 CCCTAGCAAGCCACCACTAG 59.821 60.0 0.00 0.00 33.42 2.57 F
5842 8548 0.174845 TACCCTTTCGTCGGCATCAG 59.825 55.0 0.00 0.00 0.00 2.90 F
5845 8551 0.179111 CCTTTCGTCGGCATCAGCTA 60.179 55.0 0.00 0.00 41.70 3.32 F
5847 8553 0.530744 TTTCGTCGGCATCAGCTAGT 59.469 50.0 0.00 0.00 41.70 2.57 F
7467 10481 0.814457 AGAGAGACATGGTCAGCGAC 59.186 55.0 0.00 0.79 34.60 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 4442 0.453615 AACACAAACACACACGCACG 60.454 50.000 0.00 0.00 0.00 5.34 R
2888 5463 0.251916 TCAAACCATGAGTAGGGGCG 59.748 55.000 0.00 0.00 33.04 6.13 R
3714 6326 0.034767 TCAGGGCTTGCCATCTTCTG 60.035 55.000 14.04 10.61 0.00 3.02 R
4773 7447 0.178767 TTATCGCATGGCAGAGCAGT 59.821 50.000 13.99 5.17 0.00 4.40 R
5524 8225 0.391793 GCGAAGGACAAGGAAGGAGG 60.392 60.000 0.00 0.00 0.00 4.30 R
7446 10460 1.895798 TCGCTGACCATGTCTCTCTTT 59.104 47.619 0.00 0.00 33.15 2.52 R
7458 10472 3.829886 TCATTCATTTTGTCGCTGACC 57.170 42.857 6.30 0.00 0.00 4.02 R
7606 10991 5.507985 GCATACTTGGCAGGAATGGATAAAC 60.508 44.000 2.65 0.00 0.00 2.01 R
7920 11306 6.489022 ACACCCCTAATTTGTACTTTCACTTC 59.511 38.462 0.00 0.00 0.00 3.01 R
9422 12854 0.526524 CGTGGCGAAGGATCACTCTC 60.527 60.000 0.00 0.00 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.140252 ACAGCCTAACGACCTGTGTTT 59.860 47.619 0.00 0.00 38.32 2.83
38 39 0.752054 AACGACCTGTGTTTCCCGTA 59.248 50.000 0.00 0.00 0.00 4.02
50 51 1.327303 TTCCCGTACGTACACCTTGT 58.673 50.000 24.50 0.00 0.00 3.16
74 75 3.556543 ATGCGCGGCTGTGTTTTGG 62.557 57.895 8.83 0.00 0.00 3.28
90 91 5.362717 GTGTTTTGGGGGATTAGGATTTAGG 59.637 44.000 0.00 0.00 0.00 2.69
96 97 3.244946 GGGGATTAGGATTTAGGAGGTGC 60.245 52.174 0.00 0.00 0.00 5.01
119 124 5.627735 GCTTTGAGATGTGAGTTAGGGATGA 60.628 44.000 0.00 0.00 0.00 2.92
120 125 5.344743 TTGAGATGTGAGTTAGGGATGAC 57.655 43.478 0.00 0.00 0.00 3.06
121 126 3.381590 TGAGATGTGAGTTAGGGATGACG 59.618 47.826 0.00 0.00 0.00 4.35
122 127 3.366396 AGATGTGAGTTAGGGATGACGT 58.634 45.455 0.00 0.00 0.00 4.34
125 130 2.756760 TGTGAGTTAGGGATGACGTACC 59.243 50.000 0.00 0.00 0.00 3.34
135 140 3.131577 GGGATGACGTACCTATCAACACA 59.868 47.826 0.00 0.00 0.00 3.72
177 182 0.893727 AAACCTTGGCGGCGAATCTT 60.894 50.000 12.98 0.00 35.61 2.40
188 193 3.110358 CGGCGAATCTTGTACACGATTA 58.890 45.455 23.16 0.00 30.70 1.75
208 213 6.072838 CGATTATTGGATCCAAGTGAATCCAG 60.073 42.308 30.70 22.39 43.26 3.86
229 234 6.953520 TCCAGTGGATTCCATTCACTAATTTT 59.046 34.615 8.12 0.00 39.43 1.82
230 235 7.037438 CCAGTGGATTCCATTCACTAATTTTG 58.963 38.462 9.01 0.00 39.43 2.44
231 236 7.309990 CCAGTGGATTCCATTCACTAATTTTGT 60.310 37.037 9.01 0.00 39.43 2.83
232 237 8.739039 CAGTGGATTCCATTCACTAATTTTGTA 58.261 33.333 9.01 0.00 39.43 2.41
233 238 9.479549 AGTGGATTCCATTCACTAATTTTGTAT 57.520 29.630 9.01 0.00 39.63 2.29
257 262 2.473816 TGTCTTTGTCGCTTCTCACAG 58.526 47.619 0.00 0.00 0.00 3.66
259 264 3.243873 TGTCTTTGTCGCTTCTCACAGAT 60.244 43.478 0.00 0.00 0.00 2.90
301 320 3.677002 GCTCTAGCTTCGCTCCATT 57.323 52.632 0.00 0.00 40.44 3.16
331 350 0.252881 TCCAATCTGTCTCCCAGGCT 60.253 55.000 0.00 0.00 41.83 4.58
511 536 1.187087 GGGAAGGCGAGAGAGAGAAA 58.813 55.000 0.00 0.00 0.00 2.52
512 537 1.136110 GGGAAGGCGAGAGAGAGAAAG 59.864 57.143 0.00 0.00 0.00 2.62
513 538 2.096248 GGAAGGCGAGAGAGAGAAAGA 58.904 52.381 0.00 0.00 0.00 2.52
514 539 2.099098 GGAAGGCGAGAGAGAGAAAGAG 59.901 54.545 0.00 0.00 0.00 2.85
515 540 2.799126 AGGCGAGAGAGAGAAAGAGA 57.201 50.000 0.00 0.00 0.00 3.10
516 541 2.643551 AGGCGAGAGAGAGAAAGAGAG 58.356 52.381 0.00 0.00 0.00 3.20
517 542 2.238646 AGGCGAGAGAGAGAAAGAGAGA 59.761 50.000 0.00 0.00 0.00 3.10
518 543 3.013921 GGCGAGAGAGAGAAAGAGAGAA 58.986 50.000 0.00 0.00 0.00 2.87
576 601 1.627297 GGTAGCCCAGGGTGGAAGAG 61.627 65.000 7.55 0.00 40.96 2.85
581 606 2.045536 CAGGGTGGAAGAGGCAGC 60.046 66.667 0.00 0.00 0.00 5.25
742 767 2.357952 TCGACAAGATATCTCCCGTGTG 59.642 50.000 11.61 5.58 0.00 3.82
743 768 2.099263 CGACAAGATATCTCCCGTGTGT 59.901 50.000 11.61 8.52 0.00 3.72
753 778 0.105964 TCCCGTGTGTTGAGTCTTGG 59.894 55.000 0.00 0.00 0.00 3.61
766 791 0.250338 GTCTTGGCTGGTTTCTCCGT 60.250 55.000 0.00 0.00 39.52 4.69
852 887 1.019278 CAGGCGAGGCAACGTGTAAT 61.019 55.000 0.00 0.00 46.39 1.89
909 944 4.201724 GGAGATCGTACAAATGCAGAACAC 60.202 45.833 0.00 0.00 0.00 3.32
938 973 6.312426 CAGTAGACTCAACTGAAAATAGCAGG 59.688 42.308 0.00 0.00 45.89 4.85
954 989 1.303309 CAGGCCGAGCTAATCCAAAG 58.697 55.000 0.00 0.00 0.00 2.77
958 993 1.671328 GCCGAGCTAATCCAAAGTTCC 59.329 52.381 0.00 0.00 0.00 3.62
990 1025 1.675972 AGACGAGAAGAGCGAGGCA 60.676 57.895 0.00 0.00 0.00 4.75
1095 1130 4.687901 TGAGATCAACAAGACCAAGACA 57.312 40.909 0.00 0.00 0.00 3.41
1229 1264 8.706035 GTTTCTTACGTAGTTGCTCTTTCATTA 58.294 33.333 0.00 0.00 37.78 1.90
1235 1270 7.699566 ACGTAGTTGCTCTTTCATTAACAAAA 58.300 30.769 0.00 0.00 37.78 2.44
1338 1405 3.317993 CCGTTCCAAAATATAAGCCCCTG 59.682 47.826 0.00 0.00 0.00 4.45
1363 1463 0.736325 CGTGTAGCGACTGGGAAAGG 60.736 60.000 0.00 0.00 44.77 3.11
1394 1494 1.512926 AAAGCACGTCACTCCATCAC 58.487 50.000 0.00 0.00 0.00 3.06
1398 1498 1.229209 ACGTCACTCCATCACCCCT 60.229 57.895 0.00 0.00 0.00 4.79
1399 1499 0.040646 ACGTCACTCCATCACCCCTA 59.959 55.000 0.00 0.00 0.00 3.53
1400 1500 0.460311 CGTCACTCCATCACCCCTAC 59.540 60.000 0.00 0.00 0.00 3.18
1401 1501 0.831307 GTCACTCCATCACCCCTACC 59.169 60.000 0.00 0.00 0.00 3.18
1402 1502 0.326238 TCACTCCATCACCCCTACCC 60.326 60.000 0.00 0.00 0.00 3.69
1420 1520 2.124695 GGGACGGGATTCAGCCAC 60.125 66.667 0.00 0.00 0.00 5.01
1424 1524 4.776322 CGGGATTCAGCCACGCCA 62.776 66.667 0.00 0.00 0.00 5.69
1429 1529 2.533391 GATTCAGCCACGCCAACAGC 62.533 60.000 0.00 0.00 38.52 4.40
1438 3771 2.033602 GCCAACAGCGGGGTACTT 59.966 61.111 0.00 0.00 0.00 2.24
1506 3904 1.133575 AGATGGAGGGCATCATTGTGG 60.134 52.381 0.08 0.00 0.00 4.17
1520 3918 2.107950 TTGTGGTGGTATGCTACTGC 57.892 50.000 0.00 0.00 40.20 4.40
1521 3919 0.251916 TGTGGTGGTATGCTACTGCC 59.748 55.000 0.00 0.00 38.71 4.85
1522 3920 0.541863 GTGGTGGTATGCTACTGCCT 59.458 55.000 0.00 0.00 38.71 4.75
1523 3921 1.760613 GTGGTGGTATGCTACTGCCTA 59.239 52.381 0.00 0.00 38.71 3.93
1524 3922 2.368875 GTGGTGGTATGCTACTGCCTAT 59.631 50.000 0.00 0.00 38.71 2.57
1525 3923 3.576982 GTGGTGGTATGCTACTGCCTATA 59.423 47.826 0.00 0.00 38.71 1.31
1526 3924 3.576982 TGGTGGTATGCTACTGCCTATAC 59.423 47.826 0.00 0.00 38.71 1.47
1527 3925 3.833070 GGTGGTATGCTACTGCCTATACT 59.167 47.826 0.00 0.00 38.71 2.12
1528 3926 4.322049 GGTGGTATGCTACTGCCTATACTG 60.322 50.000 0.00 0.00 38.71 2.74
1544 3942 0.614812 ACTGGCCATCCCAAAAATGC 59.385 50.000 5.51 0.00 44.81 3.56
1548 3946 1.407299 GGCCATCCCAAAAATGCTTCC 60.407 52.381 0.00 0.00 0.00 3.46
1549 3947 1.407299 GCCATCCCAAAAATGCTTCCC 60.407 52.381 0.00 0.00 0.00 3.97
1563 3961 3.190738 TTCCCCTGGTCGTTGGCAG 62.191 63.158 0.00 0.00 0.00 4.85
1570 3968 0.821517 TGGTCGTTGGCAGATACGAT 59.178 50.000 15.06 0.00 46.87 3.73
1606 4004 2.183679 AGAGGTGAGAGGGACATGTTC 58.816 52.381 0.00 0.00 0.00 3.18
1627 4025 2.669924 CACACTGAACAGATCGATGTGG 59.330 50.000 24.60 10.60 33.87 4.17
1629 4027 3.196469 ACACTGAACAGATCGATGTGGAT 59.804 43.478 24.60 14.04 33.52 3.41
1631 4029 3.196469 ACTGAACAGATCGATGTGGATGT 59.804 43.478 24.60 14.77 32.52 3.06
1634 4032 2.110578 ACAGATCGATGTGGATGTGGA 58.889 47.619 24.60 0.00 40.82 4.02
1697 4095 7.412346 GGCGATGCTAAGAAGTATTGACATATG 60.412 40.741 0.00 0.00 37.24 1.78
1698 4096 7.451429 CGATGCTAAGAAGTATTGACATATGC 58.549 38.462 1.58 0.00 32.41 3.14
1716 4114 8.073355 ACATATGCAAAGTTCGTTACTATAGC 57.927 34.615 1.58 0.00 35.54 2.97
1717 4115 5.986004 ATGCAAAGTTCGTTACTATAGCC 57.014 39.130 0.00 0.00 35.54 3.93
1742 4141 4.122776 CAGGAGTATTGCAGGTGTATCAC 58.877 47.826 0.00 0.00 0.00 3.06
1753 4152 0.732571 GTGTATCACCACATTGCCCG 59.267 55.000 0.00 0.00 35.38 6.13
1758 4157 1.199615 TCACCACATTGCCCGATAGA 58.800 50.000 0.00 0.00 39.76 1.98
1780 4196 3.002791 GTCGGTTGCTCTCATGATGAAA 58.997 45.455 0.00 0.00 0.00 2.69
1805 4225 6.317893 ACGGTTAAGAGTCATGTCTTTGTTTT 59.682 34.615 4.10 0.00 37.89 2.43
1806 4226 7.148137 ACGGTTAAGAGTCATGTCTTTGTTTTT 60.148 33.333 4.10 0.00 37.89 1.94
1862 4282 1.132643 GTAGATGGACGACGCTGAACT 59.867 52.381 0.00 0.00 0.00 3.01
1906 4327 9.640963 AACTAAGTGTATGTTCTCATGTTAGTC 57.359 33.333 0.00 0.00 32.76 2.59
1989 4410 8.103101 CACACAACAATTAAGTTAAGTGTGTG 57.897 34.615 30.52 30.52 45.02 3.82
1990 4411 6.750039 ACACAACAATTAAGTTAAGTGTGTGC 59.250 34.615 31.20 0.00 45.02 4.57
1991 4412 5.968848 ACAACAATTAAGTTAAGTGTGTGCG 59.031 36.000 24.72 16.86 45.02 5.34
1992 4413 5.744666 ACAATTAAGTTAAGTGTGTGCGT 57.255 34.783 23.74 2.49 44.22 5.24
1993 4414 5.507077 ACAATTAAGTTAAGTGTGTGCGTG 58.493 37.500 23.74 0.55 44.22 5.34
1994 4415 5.065474 ACAATTAAGTTAAGTGTGTGCGTGT 59.935 36.000 23.74 1.19 44.22 4.49
1995 4416 4.523853 TTAAGTTAAGTGTGTGCGTGTG 57.476 40.909 0.00 0.00 0.00 3.82
1996 4417 0.655733 AGTTAAGTGTGTGCGTGTGC 59.344 50.000 0.00 0.00 43.20 4.57
2012 4433 3.018428 GCGTGTGCGTGTTGCTTG 61.018 61.111 0.00 0.00 46.63 4.01
2013 4434 3.018428 CGTGTGCGTGTTGCTTGC 61.018 61.111 0.00 0.00 46.63 4.01
2014 4435 3.018428 GTGTGCGTGTTGCTTGCG 61.018 61.111 0.00 0.00 46.63 4.85
2015 4436 3.504273 TGTGCGTGTTGCTTGCGT 61.504 55.556 0.00 0.00 46.63 5.24
2016 4437 3.018428 GTGCGTGTTGCTTGCGTG 61.018 61.111 0.00 0.00 46.63 5.34
2017 4438 4.903355 TGCGTGTTGCTTGCGTGC 62.903 61.111 0.00 0.00 46.63 5.34
2019 4440 4.589700 CGTGTTGCTTGCGTGCGT 62.590 61.111 0.00 0.00 35.36 5.24
2020 4441 3.018428 GTGTTGCTTGCGTGCGTG 61.018 61.111 0.00 0.00 35.36 5.34
2021 4442 4.903355 TGTTGCTTGCGTGCGTGC 62.903 61.111 2.62 2.62 35.36 5.34
2034 4455 4.217111 CGTGCGTGCGTGTGTGTT 62.217 61.111 0.00 0.00 0.00 3.32
2069 4490 5.968676 ATATGCCCAAAACTACTAGTCCA 57.031 39.130 0.00 0.00 0.00 4.02
2071 4492 3.244582 TGCCCAAAACTACTAGTCCAGA 58.755 45.455 0.00 0.00 0.00 3.86
2075 4496 4.483311 CCAAAACTACTAGTCCAGACGAC 58.517 47.826 0.00 0.00 42.32 4.34
2101 4522 2.672651 TCCGGTCGGCGAGTACAA 60.673 61.111 11.20 0.00 34.68 2.41
2111 4532 2.852413 CGGCGAGTACAATAGTGTCTTG 59.148 50.000 0.00 2.68 39.30 3.02
2137 4558 6.239289 GGCCATATACAATGCAAGGTGTTTAT 60.239 38.462 0.00 6.16 0.00 1.40
2150 4571 9.770097 TGCAAGGTGTTTATGAAAATAAATTGA 57.230 25.926 0.00 0.00 0.00 2.57
2350 4854 8.904099 ATTTGTCCTTGTACTATTATGTAGGC 57.096 34.615 0.00 0.00 0.00 3.93
2355 4859 8.298140 GTCCTTGTACTATTATGTAGGCAGTAG 58.702 40.741 0.00 0.00 0.00 2.57
2364 4868 6.801718 TTATGTAGGCAGTAGGTACATGTT 57.198 37.500 2.30 0.00 37.80 2.71
2390 4894 0.249657 GTCTCATGATCGGCCTGGAC 60.250 60.000 0.00 0.00 0.00 4.02
2427 4931 4.657814 AGTCCCAAACATGTGTCCTTAT 57.342 40.909 0.00 0.00 0.00 1.73
2537 5041 5.730296 TCCCTCTTGTTTGTTTTTGTTCA 57.270 34.783 0.00 0.00 0.00 3.18
2592 5148 9.811995 AAACTAATACCTTGTTTTCTTTTGTCC 57.188 29.630 0.00 0.00 30.84 4.02
2622 5178 6.435277 AGCACTACCAATTCATTCATTGTTCT 59.565 34.615 0.00 0.00 32.95 3.01
2623 5179 7.611467 AGCACTACCAATTCATTCATTGTTCTA 59.389 33.333 0.00 0.00 32.95 2.10
2675 5231 3.270027 TCCAGCACTACCAATTCATTCG 58.730 45.455 0.00 0.00 0.00 3.34
2888 5463 1.197721 CTGGTTTTGTCGGTGAGCATC 59.802 52.381 0.00 0.00 0.00 3.91
2998 5594 6.015772 AGCCTTATGTGACAACGGTTATTTTT 60.016 34.615 0.00 0.00 0.00 1.94
3066 5662 8.549338 ACTTACTTCCTTGCAAGAACTATTAC 57.451 34.615 28.05 0.00 0.00 1.89
3069 5665 6.534634 ACTTCCTTGCAAGAACTATTACTGT 58.465 36.000 28.05 8.53 0.00 3.55
3139 5735 6.239148 GCATTGTGATCAGTATCCTCTCAGTA 60.239 42.308 0.00 0.00 0.00 2.74
3256 5861 0.328258 ACCTTGTTCGGCCTTAGCAT 59.672 50.000 0.00 0.00 42.56 3.79
3440 6051 1.016653 GCTTCGGAAGTCTGCAGGAC 61.017 60.000 15.13 10.82 44.80 3.85
3571 6182 1.269448 CCAAAACCACACAATCCTCGG 59.731 52.381 0.00 0.00 0.00 4.63
3605 6217 3.886505 TGATGAAACCACACAAACCCTAC 59.113 43.478 0.00 0.00 0.00 3.18
3607 6219 1.958579 GAAACCACACAAACCCTACCC 59.041 52.381 0.00 0.00 0.00 3.69
3647 6259 1.435515 CCAACCAACCACAACCACG 59.564 57.895 0.00 0.00 0.00 4.94
3659 6271 0.817634 CAACCACGGCTTCTTCACCA 60.818 55.000 0.00 0.00 0.00 4.17
3680 6292 5.016173 CCAATGGGTAGAGAATCCAAAACA 58.984 41.667 0.00 0.00 33.66 2.83
3694 6306 5.413309 TCCAAAACAAAAAGGAAGCAGAA 57.587 34.783 0.00 0.00 0.00 3.02
3714 6326 2.514458 ATGAACCCTTCCACCATCAC 57.486 50.000 0.00 0.00 0.00 3.06
3738 6350 3.177884 TGGCAAGCCCTGACACCT 61.178 61.111 8.89 0.00 38.54 4.00
3765 6379 6.648725 CTAATGTAGCTCACACAACCTTAC 57.351 41.667 0.00 0.00 40.86 2.34
3775 6389 1.339929 CACAACCTTACACCCAAAGGC 59.660 52.381 1.80 0.00 46.29 4.35
3900 6514 1.235281 GGCGAAGTCAGGTTTGGGAC 61.235 60.000 0.00 0.00 0.00 4.46
3972 6588 1.600636 ACATCAGGTGCCACAACCG 60.601 57.895 0.00 0.00 45.53 4.44
3973 6589 2.034066 ATCAGGTGCCACAACCGG 59.966 61.111 0.00 0.00 45.53 5.28
3999 6618 2.039348 GGGTTGTTGCAAGGGTAGTCTA 59.961 50.000 0.00 0.00 0.00 2.59
4017 6636 4.017808 GTCTACCACACCACTCACTAGAT 58.982 47.826 0.00 0.00 0.00 1.98
4023 6642 0.532573 ACCACTCACTAGATGCACCG 59.467 55.000 0.00 0.00 0.00 4.94
4087 6706 1.148273 CCACCCCCATACCATCACG 59.852 63.158 0.00 0.00 0.00 4.35
4113 6778 0.394565 ATATGCTCCGAAGTGGCCTC 59.605 55.000 3.32 0.00 37.80 4.70
4120 6785 2.556287 GAAGTGGCCTCGCAAACG 59.444 61.111 3.32 0.00 42.01 3.60
4158 6823 4.269603 CACCTTGAGTTCATTCGCTCATAG 59.730 45.833 0.00 0.00 40.83 2.23
4167 6832 6.595326 AGTTCATTCGCTCATAGTCAAAATGA 59.405 34.615 0.00 0.00 31.74 2.57
4186 6851 6.389830 AATGAAACATTGCACACTCTACAA 57.610 33.333 0.00 0.00 0.00 2.41
4253 6918 8.561738 TTGATTGTCAATTAAGACCTAGGTTC 57.438 34.615 17.53 9.48 37.73 3.62
4317 6982 3.074390 TGGATGACCCTAATGCCCATAAG 59.926 47.826 0.00 0.00 35.38 1.73
4369 7034 3.708631 CCATGACACTACTTCCTGGATCT 59.291 47.826 0.00 0.00 32.08 2.75
4395 7060 1.273327 CATGTTGAGTGGGCCTTTTCC 59.727 52.381 4.53 0.00 0.00 3.13
4475 7141 1.846439 CACCTTCATGTATCCCACCCT 59.154 52.381 0.00 0.00 0.00 4.34
4600 7266 9.311760 GGAGGTATCCAAGTCCATAGAGGAAAC 62.312 48.148 0.00 0.00 46.74 2.78
4662 7328 1.419762 ACACCACTCACCATGCAACTA 59.580 47.619 0.00 0.00 0.00 2.24
4683 7349 7.534723 ACTATTGCTCCTATATAACCGTCAA 57.465 36.000 0.00 0.00 0.00 3.18
4704 7370 2.579207 TCTTAGCTACACACCGATGC 57.421 50.000 0.00 0.00 0.00 3.91
4721 7387 2.689034 CCCTCACCTCCCACTCCC 60.689 72.222 0.00 0.00 0.00 4.30
4773 7447 4.816109 AGCCACCATCCTAGCTCA 57.184 55.556 0.00 0.00 0.00 4.26
4775 7449 0.326048 AGCCACCATCCTAGCTCACT 60.326 55.000 0.00 0.00 0.00 3.41
4790 7465 1.818363 CACTGCTCTGCCATGCGAT 60.818 57.895 0.00 0.00 0.00 4.58
4841 7516 5.163437 GGGAAGACTATAAGATTGTCACCGT 60.163 44.000 4.33 0.00 37.46 4.83
4849 7524 1.812571 AGATTGTCACCGTTGCCATTC 59.187 47.619 0.00 0.00 0.00 2.67
4851 7526 1.393603 TTGTCACCGTTGCCATTCAA 58.606 45.000 0.00 0.00 0.00 2.69
4955 7630 1.967779 CTTAACAGGTTTGGGGGTTGG 59.032 52.381 0.00 0.00 0.00 3.77
4972 7647 5.454613 GGGGTTGGAAAAATGTTGTGATTCT 60.455 40.000 0.00 0.00 0.00 2.40
4977 7652 7.111247 TGGAAAAATGTTGTGATTCTGAACT 57.889 32.000 0.00 0.00 0.00 3.01
5011 7686 4.936411 TCGTTTTGTGTTTCTGGTTGTCTA 59.064 37.500 0.00 0.00 0.00 2.59
5247 7942 4.362677 ACTAAGGGCAAGTTAGATCCAGA 58.637 43.478 7.32 0.00 32.67 3.86
5257 7952 6.222389 CAAGTTAGATCCAGAAGCATAGAGG 58.778 44.000 0.00 0.00 0.00 3.69
5338 8034 7.966753 CAGCTACAAATGTATGCATCCATAATC 59.033 37.037 0.19 0.00 35.79 1.75
5411 8112 3.005367 CCCACAAATAAGAAACACCGCTT 59.995 43.478 0.00 0.00 0.00 4.68
5421 8122 3.423154 CACCGCTTTCCCAGTCGC 61.423 66.667 0.00 0.00 0.00 5.19
5425 8126 2.044946 GCTTTCCCAGTCGCCCAT 60.045 61.111 0.00 0.00 0.00 4.00
5427 8128 1.750399 CTTTCCCAGTCGCCCATGG 60.750 63.158 4.14 4.14 36.27 3.66
5469 8170 2.044946 CCCCTAGCAAGCCACCAC 60.045 66.667 0.00 0.00 0.00 4.16
5470 8171 2.606587 CCCCTAGCAAGCCACCACT 61.607 63.158 0.00 0.00 0.00 4.00
5471 8172 1.271840 CCCCTAGCAAGCCACCACTA 61.272 60.000 0.00 0.00 0.00 2.74
5472 8173 0.179000 CCCTAGCAAGCCACCACTAG 59.821 60.000 0.00 0.00 33.42 2.57
5473 8174 0.462759 CCTAGCAAGCCACCACTAGC 60.463 60.000 0.00 0.00 32.49 3.42
5474 8175 0.462759 CTAGCAAGCCACCACTAGCC 60.463 60.000 0.00 0.00 0.00 3.93
5475 8176 1.198094 TAGCAAGCCACCACTAGCCA 61.198 55.000 0.00 0.00 0.00 4.75
5476 8177 2.335712 GCAAGCCACCACTAGCCAC 61.336 63.158 0.00 0.00 0.00 5.01
5477 8178 1.675641 CAAGCCACCACTAGCCACC 60.676 63.158 0.00 0.00 0.00 4.61
5478 8179 2.153401 AAGCCACCACTAGCCACCA 61.153 57.895 0.00 0.00 0.00 4.17
5511 8212 1.599047 CTTCACTCATGAGCCCGGT 59.401 57.895 22.83 0.09 35.83 5.28
5524 8225 1.677552 CCCGGTAGGCATATGGACC 59.322 63.158 4.56 0.00 35.76 4.46
5542 8243 0.250513 CCCTCCTTCCTTGTCCTTCG 59.749 60.000 0.00 0.00 0.00 3.79
5543 8244 0.391793 CCTCCTTCCTTGTCCTTCGC 60.392 60.000 0.00 0.00 0.00 4.70
5560 8261 2.690778 GCCCTCATTGGTCGTGTGC 61.691 63.158 0.00 0.00 0.00 4.57
5590 8291 2.959030 CGTGGAGATAAGGATGTGAGGA 59.041 50.000 0.00 0.00 0.00 3.71
5593 8294 5.420421 CGTGGAGATAAGGATGTGAGGATAT 59.580 44.000 0.00 0.00 0.00 1.63
5691 8393 2.179764 CCGTGATTTCGGCAATGGT 58.820 52.632 0.00 0.00 43.96 3.55
5692 8394 0.179166 CCGTGATTTCGGCAATGGTG 60.179 55.000 0.00 0.00 43.96 4.17
5699 8404 1.393603 TTCGGCAATGGTGAACAACA 58.606 45.000 0.00 0.00 0.00 3.33
5700 8405 1.614996 TCGGCAATGGTGAACAACAT 58.385 45.000 0.00 0.00 41.22 2.71
5701 8406 1.269174 TCGGCAATGGTGAACAACATG 59.731 47.619 6.10 0.00 37.86 3.21
5702 8407 1.000385 CGGCAATGGTGAACAACATGT 60.000 47.619 6.10 0.00 37.86 3.21
5704 8409 3.304996 CGGCAATGGTGAACAACATGTTA 60.305 43.478 11.53 0.00 41.28 2.41
5720 8425 7.766278 ACAACATGTTATTTTTGTAGGTTGCAA 59.234 29.630 11.53 0.00 37.26 4.08
5835 8541 1.724623 CACATGTGTACCCTTTCGTCG 59.275 52.381 18.03 0.00 0.00 5.12
5842 8548 0.174845 TACCCTTTCGTCGGCATCAG 59.825 55.000 0.00 0.00 0.00 2.90
5845 8551 0.179111 CCTTTCGTCGGCATCAGCTA 60.179 55.000 0.00 0.00 41.70 3.32
5847 8553 0.530744 TTTCGTCGGCATCAGCTAGT 59.469 50.000 0.00 0.00 41.70 2.57
5877 8583 1.148157 CTTGCGTCATCCACTAGGCG 61.148 60.000 0.00 0.00 33.74 5.52
5912 8618 6.866770 GTGATGATGGCAATTATCAAATGAGG 59.133 38.462 9.98 0.00 39.67 3.86
5988 8694 2.173519 CAATGGTGGCATTGAGGTCTT 58.826 47.619 0.00 0.00 43.26 3.01
6000 8706 2.972625 TGAGGTCTTAGTCGGCAATTG 58.027 47.619 0.00 0.00 0.00 2.32
6002 8708 3.007506 TGAGGTCTTAGTCGGCAATTGAA 59.992 43.478 10.34 0.00 0.00 2.69
6013 8719 2.093447 CGGCAATTGAAGTACTCCCTCT 60.093 50.000 10.34 0.00 0.00 3.69
6029 8735 5.012561 ACTCCCTCTGATCCATATTACTTGC 59.987 44.000 0.00 0.00 0.00 4.01
6069 8775 9.575783 GTATCTAGCACTAAAATACATCTAGGC 57.424 37.037 0.00 0.00 0.00 3.93
6113 8819 9.860393 AAATAATATGGATAGGAGGGAGTACTT 57.140 33.333 0.00 0.00 0.00 2.24
6121 8827 4.273300 AGGAGGGAGTACTTGCTATCTT 57.727 45.455 0.00 0.00 0.00 2.40
6152 8858 4.295201 TCTAGGCTTGGCTATTTAGACCA 58.705 43.478 4.39 0.00 0.00 4.02
6186 8892 6.708054 ACACTCTTCAACATTTTCTACCTGAG 59.292 38.462 0.00 0.00 0.00 3.35
6187 8893 6.931281 CACTCTTCAACATTTTCTACCTGAGA 59.069 38.462 0.00 0.00 0.00 3.27
6253 8959 3.919223 GACTATGTCAGTCGTATCCCC 57.081 52.381 0.00 0.00 44.19 4.81
6257 8963 2.454336 TGTCAGTCGTATCCCCTGAT 57.546 50.000 0.00 0.00 37.54 2.90
6319 9025 7.036996 TGATGTTTAGAATTTCTTGTGTGCA 57.963 32.000 3.86 0.00 0.00 4.57
6337 9043 3.127721 GTGCAAAGAATCTCTTGGTAGCC 59.872 47.826 0.00 0.00 36.71 3.93
6339 9045 3.623453 GCAAAGAATCTCTTGGTAGCCCT 60.623 47.826 7.09 0.00 36.71 5.19
6340 9046 3.922171 AAGAATCTCTTGGTAGCCCTG 57.078 47.619 0.00 0.00 34.98 4.45
6341 9047 3.121929 AGAATCTCTTGGTAGCCCTGA 57.878 47.619 0.00 0.00 0.00 3.86
6342 9048 2.769095 AGAATCTCTTGGTAGCCCTGAC 59.231 50.000 0.00 0.00 0.00 3.51
6591 9308 7.703058 AAGTAATAACTGTTTGGAAGGATGG 57.297 36.000 0.00 0.00 35.62 3.51
6598 9315 5.831103 ACTGTTTGGAAGGATGGACATAAT 58.169 37.500 0.00 0.00 0.00 1.28
6821 9552 5.130705 AGGTTTCCATATTTCCTCCCTTC 57.869 43.478 0.00 0.00 0.00 3.46
6827 9558 3.142174 CATATTTCCTCCCTTCCTTCGC 58.858 50.000 0.00 0.00 0.00 4.70
6994 9978 5.048921 CCATGATGACAATGTAGAAGCCATC 60.049 44.000 0.00 4.23 0.00 3.51
7060 10044 9.698309 AATGTGAAAGGTATACAATCTAGATCG 57.302 33.333 5.51 0.00 0.00 3.69
7379 10393 6.542735 GGGGACTAAATTTTACATCTGAGGAC 59.457 42.308 0.00 0.00 0.00 3.85
7428 10442 6.446318 GGTATGTGAAGTTTCTTTGCATTGA 58.554 36.000 0.00 0.00 0.00 2.57
7446 10460 8.278729 TGCATTGAATAGTATGTTGATTGTGA 57.721 30.769 0.00 0.00 0.00 3.58
7458 10472 6.549912 TGTTGATTGTGAAAGAGAGACATG 57.450 37.500 0.00 0.00 0.00 3.21
7465 10479 2.266554 GAAAGAGAGACATGGTCAGCG 58.733 52.381 0.00 0.00 34.60 5.18
7467 10481 0.814457 AGAGAGACATGGTCAGCGAC 59.186 55.000 0.00 0.79 34.60 5.19
7485 10865 6.700960 TCAGCGACAAAATGAATGAAACAAAT 59.299 30.769 0.00 0.00 0.00 2.32
7486 10866 7.864882 TCAGCGACAAAATGAATGAAACAAATA 59.135 29.630 0.00 0.00 0.00 1.40
7606 10991 8.203937 TGGTATTTTTGTATATCAACTCGTGG 57.796 34.615 0.00 0.00 35.61 4.94
7869 11255 7.675962 AATATGTTTGCGGTAAGTTCACTTA 57.324 32.000 0.00 0.00 37.40 2.24
8087 11479 2.158325 TGGGGGTGAAAGCTTTGATCTT 60.158 45.455 18.30 0.00 0.00 2.40
8119 11511 6.427547 ACCAAAATCTTATGCAAACATGTTGG 59.572 34.615 12.82 10.68 37.04 3.77
8135 11527 2.618241 TGTTGGTCATCTTGTTGCAGAC 59.382 45.455 0.00 0.00 0.00 3.51
8207 11600 5.546526 TGTTGATTACAATTTTTGGGAGGC 58.453 37.500 0.00 0.00 38.32 4.70
8234 11627 5.869579 GAGAATCCATATTCAAGCACCCTA 58.130 41.667 1.35 0.00 43.44 3.53
8285 11678 2.115266 AAGGCCGGTGGAAAGTGG 59.885 61.111 1.90 0.00 0.00 4.00
8300 11693 7.719633 GGTGGAAAGTGGCTTAATAGATAATCA 59.280 37.037 0.00 0.00 0.00 2.57
8301 11694 8.778358 GTGGAAAGTGGCTTAATAGATAATCAG 58.222 37.037 0.00 0.00 0.00 2.90
8392 11785 4.320202 GCAAAACACTGTGGTGGTATGTAG 60.320 45.833 13.09 0.00 43.38 2.74
8393 11786 4.699925 AAACACTGTGGTGGTATGTAGT 57.300 40.909 13.09 0.00 43.38 2.73
8394 11787 5.811796 AAACACTGTGGTGGTATGTAGTA 57.188 39.130 13.09 0.00 43.38 1.82
8455 11848 4.370917 GCATTTTCTTTGAGCCACTTTCA 58.629 39.130 0.00 0.00 0.00 2.69
8479 11872 9.958180 TCACTATGTTCTAAATTCTTTGATGGA 57.042 29.630 0.00 0.00 0.00 3.41
8658 12064 5.473504 AGTGTGTTTCCTAGCCAATTAACTG 59.526 40.000 0.00 0.00 0.00 3.16
8659 12065 5.240844 GTGTGTTTCCTAGCCAATTAACTGT 59.759 40.000 0.00 0.00 0.00 3.55
8660 12066 6.428771 GTGTGTTTCCTAGCCAATTAACTGTA 59.571 38.462 0.00 0.00 0.00 2.74
8663 12069 8.520351 GTGTTTCCTAGCCAATTAACTGTATTT 58.480 33.333 0.00 0.00 0.00 1.40
8664 12070 8.736244 TGTTTCCTAGCCAATTAACTGTATTTC 58.264 33.333 0.00 0.00 0.00 2.17
8669 12075 8.406297 CCTAGCCAATTAACTGTATTTCTTTCC 58.594 37.037 0.00 0.00 0.00 3.13
8671 12077 8.056407 AGCCAATTAACTGTATTTCTTTCCTC 57.944 34.615 0.00 0.00 0.00 3.71
8672 12078 7.122799 AGCCAATTAACTGTATTTCTTTCCTCC 59.877 37.037 0.00 0.00 0.00 4.30
8760 12166 8.945481 TTTCCAATCCATACTAATTGCATTTG 57.055 30.769 4.11 0.00 32.65 2.32
8802 12211 8.379331 TGAATGGAATCGGGTACATATTATCAA 58.621 33.333 0.00 0.00 0.00 2.57
8858 12267 4.626287 GCAGGTGACCAGATCCTTTTCATA 60.626 45.833 3.63 0.00 0.00 2.15
8937 12346 1.195900 TGCCGAGTGCGACAAAATAAC 59.804 47.619 0.00 0.00 45.60 1.89
8998 12411 8.491950 GTTTGCCATTGTTAACGTGAAAATAAT 58.508 29.630 11.21 0.00 0.00 1.28
9024 12437 6.839454 AGAATCTCATTAGAGGACGGTACTA 58.161 40.000 0.00 0.00 42.34 1.82
9101 12533 3.604065 TCAACGCTAGCTAGTACATCG 57.396 47.619 21.62 17.35 0.00 3.84
9105 12537 1.136308 CGCTAGCTAGTACATCGTCCG 60.136 57.143 21.62 9.55 0.00 4.79
9108 12540 0.465824 AGCTAGTACATCGTCCGCCT 60.466 55.000 0.00 0.00 0.00 5.52
9123 12555 3.382546 GTCCGCCTAGGTACAATAGTCAA 59.617 47.826 11.31 0.00 41.99 3.18
9126 12558 4.202223 CCGCCTAGGTACAATAGTCAACAT 60.202 45.833 11.31 0.00 34.51 2.71
9132 12564 7.382488 CCTAGGTACAATAGTCAACATGATTCG 59.618 40.741 0.00 0.00 0.00 3.34
9181 12613 1.826385 CCACAACATTGGGACCTCTC 58.174 55.000 0.00 0.00 31.80 3.20
9256 12688 7.640597 AAGGTATTTAATTTGAGTAGCCACC 57.359 36.000 0.00 0.00 0.00 4.61
9258 12690 5.587443 GGTATTTAATTTGAGTAGCCACCGT 59.413 40.000 0.00 0.00 0.00 4.83
9268 12700 1.475280 GTAGCCACCGTGTATGAGTCA 59.525 52.381 0.00 0.00 0.00 3.41
9398 12830 1.228154 GGACAAACTCCCGGCAGTT 60.228 57.895 4.47 4.47 38.30 3.16
9421 12853 3.010420 TCTCTCGTCTCAATCACGACAT 58.990 45.455 0.00 0.00 41.27 3.06
9422 12854 3.104470 CTCTCGTCTCAATCACGACATG 58.896 50.000 0.00 0.00 41.27 3.21
9441 12873 0.526524 GAGAGTGATCCTTCGCCACG 60.527 60.000 0.00 0.00 36.06 4.94
9455 12887 0.179108 GCCACGACACTCTATCCACC 60.179 60.000 0.00 0.00 0.00 4.61
9456 12888 0.460311 CCACGACACTCTATCCACCC 59.540 60.000 0.00 0.00 0.00 4.61
9481 12914 6.907853 TGTTTTGTCCCATCAACATTGATA 57.092 33.333 6.79 0.00 45.62 2.15
9518 12951 3.631250 TCAAGTGCCTCCAATTTATCCC 58.369 45.455 0.00 0.00 0.00 3.85
9542 12975 4.459390 TGCTCATTATTTGCTTGCACAT 57.541 36.364 0.00 0.00 0.00 3.21
9600 13033 3.200605 ACATCTCACCTGGTATGCAATCA 59.799 43.478 0.00 0.00 0.00 2.57
9624 13057 4.940046 CAGTGACTATTGCTCCTTTGATGT 59.060 41.667 0.00 0.00 0.00 3.06
9628 13061 0.729116 ATTGCTCCTTTGATGTCGCG 59.271 50.000 0.00 0.00 0.00 5.87
9648 13082 2.195567 GGCCACCACATATGCGCAT 61.196 57.895 28.23 28.23 0.00 4.73
9653 13087 2.099592 CCACCACATATGCGCATTTTCT 59.900 45.455 30.42 7.00 0.00 2.52
9753 13187 3.972638 AGTGGAGCTATTGAGACCATCAT 59.027 43.478 0.00 0.00 37.89 2.45
9756 13190 4.063689 GGAGCTATTGAGACCATCATGTG 58.936 47.826 0.00 0.00 37.89 3.21
9775 13209 2.568623 GGACCCATGATATGTCCACC 57.431 55.000 14.78 0.00 46.29 4.61
9827 13261 7.732140 TCCATCCTTACAATGATACAGAGAGAT 59.268 37.037 0.00 0.00 0.00 2.75
9832 13266 4.560739 ACAATGATACAGAGAGATGGGGA 58.439 43.478 0.00 0.00 0.00 4.81
9833 13267 4.592351 ACAATGATACAGAGAGATGGGGAG 59.408 45.833 0.00 0.00 0.00 4.30
9834 13268 4.756203 ATGATACAGAGAGATGGGGAGA 57.244 45.455 0.00 0.00 0.00 3.71
9835 13269 4.111255 TGATACAGAGAGATGGGGAGAG 57.889 50.000 0.00 0.00 0.00 3.20
9836 13270 3.181424 TGATACAGAGAGATGGGGAGAGG 60.181 52.174 0.00 0.00 0.00 3.69
9837 13271 1.313889 ACAGAGAGATGGGGAGAGGA 58.686 55.000 0.00 0.00 0.00 3.71
9838 13272 1.865595 ACAGAGAGATGGGGAGAGGAT 59.134 52.381 0.00 0.00 0.00 3.24
9839 13273 2.158325 ACAGAGAGATGGGGAGAGGATC 60.158 54.545 0.00 0.00 0.00 3.36
9840 13274 2.151266 AGAGAGATGGGGAGAGGATCA 58.849 52.381 0.00 0.00 37.82 2.92
9841 13275 2.521841 AGAGAGATGGGGAGAGGATCAA 59.478 50.000 0.00 0.00 37.82 2.57
9842 13276 3.051496 AGAGAGATGGGGAGAGGATCAAA 60.051 47.826 0.00 0.00 37.82 2.69
9843 13277 3.713764 GAGAGATGGGGAGAGGATCAAAA 59.286 47.826 0.00 0.00 37.82 2.44
9844 13278 4.314238 AGAGATGGGGAGAGGATCAAAAT 58.686 43.478 0.00 0.00 37.82 1.82
9845 13279 4.730904 AGAGATGGGGAGAGGATCAAAATT 59.269 41.667 0.00 0.00 37.82 1.82
9846 13280 4.801164 AGATGGGGAGAGGATCAAAATTG 58.199 43.478 0.00 0.00 37.82 2.32
9847 13281 4.479796 AGATGGGGAGAGGATCAAAATTGA 59.520 41.667 0.00 0.00 42.14 2.57
9863 13297 8.140677 TCAAAATTGATGTGAAAAACATGTCC 57.859 30.769 0.00 0.00 44.51 4.02
9864 13298 6.768029 AAATTGATGTGAAAAACATGTCCG 57.232 33.333 0.00 0.00 44.51 4.79
9865 13299 3.913548 TGATGTGAAAAACATGTCCGG 57.086 42.857 0.00 0.00 44.51 5.14
9866 13300 2.556189 TGATGTGAAAAACATGTCCGGG 59.444 45.455 0.00 0.00 44.51 5.73
9867 13301 0.671251 TGTGAAAAACATGTCCGGGC 59.329 50.000 0.00 0.00 32.36 6.13
9868 13302 0.386731 GTGAAAAACATGTCCGGGCG 60.387 55.000 0.00 0.00 0.00 6.13
9869 13303 1.211709 GAAAAACATGTCCGGGCGG 59.788 57.895 0.00 0.00 0.00 6.13
9870 13304 1.520600 GAAAAACATGTCCGGGCGGT 61.521 55.000 0.00 0.00 36.47 5.68
9871 13305 1.520600 AAAAACATGTCCGGGCGGTC 61.521 55.000 0.00 0.00 36.47 4.79
9872 13306 2.406002 AAAACATGTCCGGGCGGTCT 62.406 55.000 0.00 0.00 36.47 3.85
9873 13307 2.798148 AAACATGTCCGGGCGGTCTC 62.798 60.000 0.00 0.00 36.47 3.36
9874 13308 3.770040 CATGTCCGGGCGGTCTCA 61.770 66.667 0.00 0.00 36.47 3.27
9875 13309 2.764128 ATGTCCGGGCGGTCTCAT 60.764 61.111 0.00 0.00 36.47 2.90
9876 13310 2.367202 ATGTCCGGGCGGTCTCATT 61.367 57.895 0.00 0.00 36.47 2.57
9877 13311 1.910580 ATGTCCGGGCGGTCTCATTT 61.911 55.000 0.00 0.00 36.47 2.32
9878 13312 1.814169 GTCCGGGCGGTCTCATTTC 60.814 63.158 0.00 0.00 36.47 2.17
9879 13313 1.987855 TCCGGGCGGTCTCATTTCT 60.988 57.895 0.00 0.00 36.47 2.52
9880 13314 1.078426 CCGGGCGGTCTCATTTCTT 60.078 57.895 0.00 0.00 0.00 2.52
9881 13315 1.090052 CCGGGCGGTCTCATTTCTTC 61.090 60.000 0.00 0.00 0.00 2.87
9882 13316 0.108138 CGGGCGGTCTCATTTCTTCT 60.108 55.000 0.00 0.00 0.00 2.85
9883 13317 1.657822 GGGCGGTCTCATTTCTTCTC 58.342 55.000 0.00 0.00 0.00 2.87
9884 13318 1.657822 GGCGGTCTCATTTCTTCTCC 58.342 55.000 0.00 0.00 0.00 3.71
9885 13319 1.066143 GGCGGTCTCATTTCTTCTCCA 60.066 52.381 0.00 0.00 0.00 3.86
9886 13320 2.003301 GCGGTCTCATTTCTTCTCCAC 58.997 52.381 0.00 0.00 0.00 4.02
9887 13321 2.612972 GCGGTCTCATTTCTTCTCCACA 60.613 50.000 0.00 0.00 0.00 4.17
9888 13322 3.866651 CGGTCTCATTTCTTCTCCACAT 58.133 45.455 0.00 0.00 0.00 3.21
9889 13323 4.680708 GCGGTCTCATTTCTTCTCCACATA 60.681 45.833 0.00 0.00 0.00 2.29
9890 13324 5.605534 CGGTCTCATTTCTTCTCCACATAT 58.394 41.667 0.00 0.00 0.00 1.78
9891 13325 6.051717 CGGTCTCATTTCTTCTCCACATATT 58.948 40.000 0.00 0.00 0.00 1.28
9892 13326 6.018425 CGGTCTCATTTCTTCTCCACATATTG 60.018 42.308 0.00 0.00 0.00 1.90
9894 13328 6.261826 GTCTCATTTCTTCTCCACATATTGGG 59.738 42.308 4.69 0.00 46.92 4.12
9900 13334 2.369983 CTCCACATATTGGGGCATGT 57.630 50.000 0.00 0.00 46.92 3.21
9901 13335 2.669781 CTCCACATATTGGGGCATGTT 58.330 47.619 0.00 0.00 46.92 2.71
9902 13336 3.033184 CTCCACATATTGGGGCATGTTT 58.967 45.455 0.00 0.00 46.92 2.83
9903 13337 2.765135 TCCACATATTGGGGCATGTTTG 59.235 45.455 0.00 0.00 46.92 2.93
9904 13338 2.158928 CCACATATTGGGGCATGTTTGG 60.159 50.000 0.00 0.00 42.54 3.28
9905 13339 2.117865 ACATATTGGGGCATGTTTGGG 58.882 47.619 0.00 0.00 31.32 4.12
9906 13340 1.417145 CATATTGGGGCATGTTTGGGG 59.583 52.381 0.00 0.00 0.00 4.96
9907 13341 0.326048 TATTGGGGCATGTTTGGGGG 60.326 55.000 0.00 0.00 0.00 5.40
9908 13342 2.117248 ATTGGGGCATGTTTGGGGGA 62.117 55.000 0.00 0.00 0.00 4.81
9909 13343 2.364186 GGGGCATGTTTGGGGGAG 60.364 66.667 0.00 0.00 0.00 4.30
9910 13344 2.445155 GGGCATGTTTGGGGGAGT 59.555 61.111 0.00 0.00 0.00 3.85
9911 13345 1.682344 GGGCATGTTTGGGGGAGTC 60.682 63.158 0.00 0.00 0.00 3.36
9912 13346 1.384191 GGCATGTTTGGGGGAGTCT 59.616 57.895 0.00 0.00 0.00 3.24
9913 13347 0.623723 GGCATGTTTGGGGGAGTCTA 59.376 55.000 0.00 0.00 0.00 2.59
9914 13348 1.005450 GGCATGTTTGGGGGAGTCTAA 59.995 52.381 0.00 0.00 0.00 2.10
9915 13349 2.556559 GGCATGTTTGGGGGAGTCTAAA 60.557 50.000 0.00 0.00 0.00 1.85
9916 13350 2.492088 GCATGTTTGGGGGAGTCTAAAC 59.508 50.000 0.00 0.00 34.51 2.01
9917 13351 3.761897 CATGTTTGGGGGAGTCTAAACA 58.238 45.455 8.49 8.49 44.22 2.83
9918 13352 4.675063 ATGTTTGGGGGAGTCTAAACAT 57.325 40.909 11.62 11.62 44.10 2.71
9919 13353 5.505780 CATGTTTGGGGGAGTCTAAACATA 58.494 41.667 15.30 0.00 46.27 2.29
9920 13354 5.789574 TGTTTGGGGGAGTCTAAACATAT 57.210 39.130 0.00 0.00 37.90 1.78
9921 13355 5.505780 TGTTTGGGGGAGTCTAAACATATG 58.494 41.667 0.00 0.00 37.90 1.78
9922 13356 4.788925 TTGGGGGAGTCTAAACATATGG 57.211 45.455 7.80 0.00 0.00 2.74
9923 13357 3.053077 TGGGGGAGTCTAAACATATGGG 58.947 50.000 7.80 0.00 0.00 4.00
9924 13358 2.375509 GGGGGAGTCTAAACATATGGGG 59.624 54.545 7.80 0.00 0.00 4.96
9925 13359 2.224793 GGGGAGTCTAAACATATGGGGC 60.225 54.545 7.80 0.00 0.00 5.80
9926 13360 2.441750 GGGAGTCTAAACATATGGGGCA 59.558 50.000 7.80 0.00 0.00 5.36
9927 13361 3.496870 GGGAGTCTAAACATATGGGGCAG 60.497 52.174 7.80 0.00 0.00 4.85
9928 13362 3.496870 GGAGTCTAAACATATGGGGCAGG 60.497 52.174 7.80 0.00 0.00 4.85
9929 13363 3.123273 AGTCTAAACATATGGGGCAGGT 58.877 45.455 7.80 0.00 0.00 4.00
9930 13364 3.527665 AGTCTAAACATATGGGGCAGGTT 59.472 43.478 7.80 0.00 0.00 3.50
9931 13365 3.883489 GTCTAAACATATGGGGCAGGTTC 59.117 47.826 7.80 0.00 0.00 3.62
9932 13366 1.762708 AAACATATGGGGCAGGTTCG 58.237 50.000 7.80 0.00 0.00 3.95
9933 13367 0.106719 AACATATGGGGCAGGTTCGG 60.107 55.000 7.80 0.00 0.00 4.30
9934 13368 0.986019 ACATATGGGGCAGGTTCGGA 60.986 55.000 7.80 0.00 0.00 4.55
9935 13369 0.182537 CATATGGGGCAGGTTCGGAA 59.817 55.000 0.00 0.00 0.00 4.30
9936 13370 0.474184 ATATGGGGCAGGTTCGGAAG 59.526 55.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.005294 CGTACGGGAAACACAGGTCG 61.005 60.000 7.57 0.00 0.00 4.79
32 33 0.597568 CACAAGGTGTACGTACGGGA 59.402 55.000 21.06 3.89 0.00 5.14
38 39 2.289547 GCATGAAACACAAGGTGTACGT 59.710 45.455 2.00 0.00 46.79 3.57
50 51 2.977456 ACAGCCGCGCATGAAACA 60.977 55.556 8.75 0.00 0.00 2.83
74 75 3.244946 GCACCTCCTAAATCCTAATCCCC 60.245 52.174 0.00 0.00 0.00 4.81
90 91 3.051081 ACTCACATCTCAAAGCACCTC 57.949 47.619 0.00 0.00 0.00 3.85
96 97 5.814705 GTCATCCCTAACTCACATCTCAAAG 59.185 44.000 0.00 0.00 0.00 2.77
119 124 3.921119 TCGTTGTGTTGATAGGTACGT 57.079 42.857 0.00 0.00 0.00 3.57
120 125 3.795101 GGATCGTTGTGTTGATAGGTACG 59.205 47.826 0.00 0.00 0.00 3.67
121 126 3.795101 CGGATCGTTGTGTTGATAGGTAC 59.205 47.826 0.00 0.00 0.00 3.34
122 127 3.444742 ACGGATCGTTGTGTTGATAGGTA 59.555 43.478 0.00 0.00 36.35 3.08
125 130 3.486108 GCTACGGATCGTTGTGTTGATAG 59.514 47.826 0.00 0.00 41.54 2.08
135 140 0.736636 TCATGACGCTACGGATCGTT 59.263 50.000 0.00 0.00 41.54 3.85
177 182 5.815222 CACTTGGATCCAATAATCGTGTACA 59.185 40.000 27.20 0.44 35.20 2.90
188 193 4.275810 CACTGGATTCACTTGGATCCAAT 58.724 43.478 27.20 12.49 42.03 3.16
229 234 6.037720 TGAGAAGCGACAAAGACAAAAATACA 59.962 34.615 0.00 0.00 0.00 2.29
230 235 6.357240 GTGAGAAGCGACAAAGACAAAAATAC 59.643 38.462 0.00 0.00 0.00 1.89
231 236 6.037720 TGTGAGAAGCGACAAAGACAAAAATA 59.962 34.615 0.00 0.00 0.00 1.40
232 237 5.163663 TGTGAGAAGCGACAAAGACAAAAAT 60.164 36.000 0.00 0.00 0.00 1.82
233 238 4.155099 TGTGAGAAGCGACAAAGACAAAAA 59.845 37.500 0.00 0.00 0.00 1.94
234 239 3.687212 TGTGAGAAGCGACAAAGACAAAA 59.313 39.130 0.00 0.00 0.00 2.44
235 240 3.266636 TGTGAGAAGCGACAAAGACAAA 58.733 40.909 0.00 0.00 0.00 2.83
236 241 2.866156 CTGTGAGAAGCGACAAAGACAA 59.134 45.455 0.00 0.00 0.00 3.18
237 242 2.100749 TCTGTGAGAAGCGACAAAGACA 59.899 45.455 0.00 0.00 0.00 3.41
257 262 2.610727 GGATGACGCCAGCTACCTTATC 60.611 54.545 0.00 0.00 0.00 1.75
259 264 0.750850 GGATGACGCCAGCTACCTTA 59.249 55.000 0.00 0.00 0.00 2.69
331 350 4.082523 GCCTGCCTCGGTGTGCTA 62.083 66.667 0.00 0.00 0.00 3.49
356 375 7.710475 GGAAATCAATCAAAGTTTTTGGACTCA 59.290 33.333 2.09 0.00 0.00 3.41
412 431 1.075601 TCTCCAGCATTTCCCCTTGT 58.924 50.000 0.00 0.00 0.00 3.16
512 537 9.034544 GCTCTTCATTTTTCTCTATCTTCTCTC 57.965 37.037 0.00 0.00 0.00 3.20
513 538 7.706179 CGCTCTTCATTTTTCTCTATCTTCTCT 59.294 37.037 0.00 0.00 0.00 3.10
514 539 7.042791 CCGCTCTTCATTTTTCTCTATCTTCTC 60.043 40.741 0.00 0.00 0.00 2.87
515 540 6.760770 CCGCTCTTCATTTTTCTCTATCTTCT 59.239 38.462 0.00 0.00 0.00 2.85
516 541 6.536941 ACCGCTCTTCATTTTTCTCTATCTTC 59.463 38.462 0.00 0.00 0.00 2.87
517 542 6.410540 ACCGCTCTTCATTTTTCTCTATCTT 58.589 36.000 0.00 0.00 0.00 2.40
518 543 5.983540 ACCGCTCTTCATTTTTCTCTATCT 58.016 37.500 0.00 0.00 0.00 1.98
530 555 1.215647 GGACGTGACCGCTCTTCAT 59.784 57.895 0.00 0.00 37.70 2.57
576 601 0.968405 TTTCATCCTGTTTGGCTGCC 59.032 50.000 12.87 12.87 32.27 4.85
581 606 1.470098 CGGCTCTTTCATCCTGTTTGG 59.530 52.381 0.00 0.00 37.10 3.28
728 753 3.381908 AGACTCAACACACGGGAGATATC 59.618 47.826 0.00 0.00 33.00 1.63
742 767 2.550180 GAGAAACCAGCCAAGACTCAAC 59.450 50.000 0.00 0.00 0.00 3.18
743 768 2.487265 GGAGAAACCAGCCAAGACTCAA 60.487 50.000 0.00 0.00 38.79 3.02
753 778 0.670854 GACCAGACGGAGAAACCAGC 60.671 60.000 0.00 0.00 38.90 4.85
766 791 1.099689 CATGCATGCATGTGACCAGA 58.900 50.000 40.30 10.77 46.20 3.86
800 825 2.629137 TCTTTTGCACGTGGACCTAGTA 59.371 45.455 18.88 0.00 0.00 1.82
802 827 2.163818 TCTTTTGCACGTGGACCTAG 57.836 50.000 18.88 11.35 0.00 3.02
871 906 5.482908 ACGATCTCCATGACATATTTAGCC 58.517 41.667 0.00 0.00 0.00 3.93
930 965 1.002544 GGATTAGCTCGGCCTGCTATT 59.997 52.381 22.33 19.31 41.83 1.73
938 973 1.671328 GGAACTTTGGATTAGCTCGGC 59.329 52.381 0.00 0.00 0.00 5.54
954 989 3.433615 CGTCTGATGGACAAGAAAGGAAC 59.566 47.826 0.00 0.00 44.70 3.62
958 993 4.179926 TCTCGTCTGATGGACAAGAAAG 57.820 45.455 0.00 0.00 44.70 2.62
1215 1250 7.468922 AGCTTTTTGTTAATGAAAGAGCAAC 57.531 32.000 19.18 0.00 33.35 4.17
1306 1373 9.349145 CTTATATTTTGGAACGGACGAATTTTT 57.651 29.630 0.00 0.00 0.00 1.94
1307 1374 7.486870 GCTTATATTTTGGAACGGACGAATTTT 59.513 33.333 0.00 0.00 0.00 1.82
1355 1422 1.786937 TTCAGCAAAAGCCTTTCCCA 58.213 45.000 0.00 0.00 0.00 4.37
1382 1482 0.831307 GGTAGGGGTGATGGAGTGAC 59.169 60.000 0.00 0.00 0.00 3.67
1402 1502 3.781307 TGGCTGAATCCCGTCCCG 61.781 66.667 0.00 0.00 0.00 5.14
1407 1507 4.776322 TGGCGTGGCTGAATCCCG 62.776 66.667 0.00 0.00 0.00 5.14
1424 1524 0.475044 TTTCCAAGTACCCCGCTGTT 59.525 50.000 0.00 0.00 0.00 3.16
1429 1529 3.418047 AGTTGATTTTCCAAGTACCCCG 58.582 45.455 0.00 0.00 0.00 5.73
1438 3771 3.909995 TGAGGGAGAGAGTTGATTTTCCA 59.090 43.478 0.00 0.00 0.00 3.53
1506 3904 4.322049 CCAGTATAGGCAGTAGCATACCAC 60.322 50.000 0.00 0.00 44.47 4.16
1520 3918 3.593442 TTTTGGGATGGCCAGTATAGG 57.407 47.619 13.05 0.00 35.15 2.57
1521 3919 4.262164 GCATTTTTGGGATGGCCAGTATAG 60.262 45.833 13.05 0.00 35.15 1.31
1522 3920 3.640967 GCATTTTTGGGATGGCCAGTATA 59.359 43.478 13.05 0.00 35.15 1.47
1523 3921 2.435437 GCATTTTTGGGATGGCCAGTAT 59.565 45.455 13.05 0.00 35.15 2.12
1524 3922 1.830477 GCATTTTTGGGATGGCCAGTA 59.170 47.619 13.05 0.00 35.15 2.74
1525 3923 0.614812 GCATTTTTGGGATGGCCAGT 59.385 50.000 13.05 0.00 35.15 4.00
1526 3924 0.906775 AGCATTTTTGGGATGGCCAG 59.093 50.000 13.05 0.00 35.15 4.85
1527 3925 1.278699 GAAGCATTTTTGGGATGGCCA 59.721 47.619 8.56 8.56 35.15 5.36
1528 3926 1.407299 GGAAGCATTTTTGGGATGGCC 60.407 52.381 0.00 0.00 0.00 5.36
1544 3942 2.359975 GCCAACGACCAGGGGAAG 60.360 66.667 0.00 0.00 0.00 3.46
1548 3946 0.462047 GTATCTGCCAACGACCAGGG 60.462 60.000 0.00 0.00 0.00 4.45
1549 3947 0.806102 CGTATCTGCCAACGACCAGG 60.806 60.000 0.00 0.00 41.55 4.45
1563 3961 3.760264 CGCTGACATTGTCATCGTATC 57.240 47.619 26.57 10.35 43.90 2.24
1570 3968 2.760650 ACCTCTATCGCTGACATTGTCA 59.239 45.455 18.08 18.08 40.50 3.58
1606 4004 2.669924 CCACATCGATCTGTTCAGTGTG 59.330 50.000 0.00 11.14 38.30 3.82
1627 4025 6.865205 CAGTTGATTTTCTTCCTTTCCACATC 59.135 38.462 0.00 0.00 0.00 3.06
1629 4027 5.890985 TCAGTTGATTTTCTTCCTTTCCACA 59.109 36.000 0.00 0.00 0.00 4.17
1631 4029 6.550854 ACATCAGTTGATTTTCTTCCTTTCCA 59.449 34.615 0.00 0.00 31.21 3.53
1634 4032 8.242729 AGAACATCAGTTGATTTTCTTCCTTT 57.757 30.769 14.62 0.00 44.58 3.11
1697 4095 5.522460 TGATGGCTATAGTAACGAACTTTGC 59.478 40.000 0.84 0.00 39.80 3.68
1698 4096 6.201044 CCTGATGGCTATAGTAACGAACTTTG 59.799 42.308 0.84 0.00 39.80 2.77
1716 4114 2.092753 ACACCTGCAATACTCCTGATGG 60.093 50.000 0.00 0.00 0.00 3.51
1717 4115 3.272574 ACACCTGCAATACTCCTGATG 57.727 47.619 0.00 0.00 0.00 3.07
1742 4141 1.871080 GACTCTATCGGGCAATGTGG 58.129 55.000 0.00 0.00 0.00 4.17
1753 4152 3.316588 TCATGAGAGCAACCGACTCTATC 59.683 47.826 0.00 0.00 44.50 2.08
1758 4157 1.827344 TCATCATGAGAGCAACCGACT 59.173 47.619 0.09 0.00 0.00 4.18
1780 4196 4.957296 ACAAAGACATGACTCTTAACCGT 58.043 39.130 0.00 0.00 29.89 4.83
1862 4282 2.906389 AGTTCAGACTCTATTGGGCACA 59.094 45.455 0.00 0.00 0.00 4.57
1906 4327 3.802139 ACACACAAACTGACTATGACACG 59.198 43.478 0.00 0.00 0.00 4.49
1962 4383 8.322906 CACACTTAACTTAATTGTTGTGTGTC 57.677 34.615 16.32 0.00 42.87 3.67
1984 4405 3.858989 CACACGCACACGCACACA 61.859 61.111 0.00 0.00 45.53 3.72
1990 4411 4.217111 AACACGCACACGCACACG 62.217 61.111 0.00 0.00 45.53 4.49
1991 4412 2.647481 CAACACGCACACGCACAC 60.647 61.111 0.00 0.00 45.53 3.82
1992 4413 4.528740 GCAACACGCACACGCACA 62.529 61.111 0.00 0.00 45.53 4.57
1993 4414 3.733190 AAGCAACACGCACACGCAC 62.733 57.895 0.00 0.00 46.13 5.34
1994 4415 3.504273 AAGCAACACGCACACGCA 61.504 55.556 0.00 0.00 46.13 5.24
1995 4416 3.018428 CAAGCAACACGCACACGC 61.018 61.111 0.00 0.00 46.13 5.34
1996 4417 3.018428 GCAAGCAACACGCACACG 61.018 61.111 0.00 0.00 46.13 4.49
1997 4418 3.018428 CGCAAGCAACACGCACAC 61.018 61.111 0.00 0.00 46.13 3.82
1998 4419 3.504273 ACGCAAGCAACACGCACA 61.504 55.556 0.00 0.00 46.13 4.57
1999 4420 3.018428 CACGCAAGCAACACGCAC 61.018 61.111 0.00 0.00 46.13 5.34
2000 4421 4.903355 GCACGCAAGCAACACGCA 62.903 61.111 0.00 0.00 46.13 5.24
2002 4423 4.589700 ACGCACGCAAGCAACACG 62.590 61.111 0.00 0.00 45.62 4.49
2003 4424 3.018428 CACGCACGCAAGCAACAC 61.018 61.111 0.00 0.00 45.62 3.32
2004 4425 4.903355 GCACGCACGCAAGCAACA 62.903 61.111 0.00 0.00 45.62 3.33
2017 4438 3.710381 AAACACACACGCACGCACG 62.710 57.895 0.00 0.00 39.50 5.34
2018 4439 2.099446 AAACACACACGCACGCAC 59.901 55.556 0.00 0.00 0.00 5.34
2019 4440 2.099254 CAAACACACACGCACGCA 59.901 55.556 0.00 0.00 0.00 5.24
2020 4441 2.099446 ACAAACACACACGCACGC 59.901 55.556 0.00 0.00 0.00 5.34
2021 4442 0.453615 AACACAAACACACACGCACG 60.454 50.000 0.00 0.00 0.00 5.34
2022 4443 1.692296 AAACACAAACACACACGCAC 58.308 45.000 0.00 0.00 0.00 5.34
2023 4444 2.484651 ACTAAACACAAACACACACGCA 59.515 40.909 0.00 0.00 0.00 5.24
2024 4445 3.095738 GACTAAACACAAACACACACGC 58.904 45.455 0.00 0.00 0.00 5.34
2025 4446 4.593597 AGACTAAACACAAACACACACG 57.406 40.909 0.00 0.00 0.00 4.49
2026 4447 7.744715 GCATATAGACTAAACACAAACACACAC 59.255 37.037 0.00 0.00 0.00 3.82
2027 4448 7.094975 GGCATATAGACTAAACACAAACACACA 60.095 37.037 0.00 0.00 0.00 3.72
2034 4455 7.668052 AGTTTTGGGCATATAGACTAAACACAA 59.332 33.333 0.00 0.00 35.18 3.33
2069 4490 2.697761 CGGACATGACCCGTCGTCT 61.698 63.158 18.46 0.00 42.49 4.18
2071 4492 3.755628 CCGGACATGACCCGTCGT 61.756 66.667 22.55 0.00 45.14 4.34
2075 4496 4.508128 CCGACCGGACATGACCCG 62.508 72.222 9.46 19.35 46.10 5.28
2081 4502 2.438975 TACTCGCCGACCGGACAT 60.439 61.111 9.46 0.00 37.50 3.06
2082 4503 3.434319 GTACTCGCCGACCGGACA 61.434 66.667 9.46 0.00 37.50 4.02
2101 4522 5.904984 TTGTATATGGCCCAAGACACTAT 57.095 39.130 0.00 0.00 0.00 2.12
2111 4532 2.297033 CACCTTGCATTGTATATGGCCC 59.703 50.000 0.00 0.00 0.00 5.80
2191 4612 2.236395 TGGCAGAGGTTCCTAAGTAAGC 59.764 50.000 0.00 0.00 0.00 3.09
2348 4770 4.630069 CAGTAACAACATGTACCTACTGCC 59.370 45.833 19.81 1.19 34.48 4.85
2350 4854 6.688578 AGACAGTAACAACATGTACCTACTG 58.311 40.000 25.13 25.13 41.45 2.74
2355 4859 6.163476 TCATGAGACAGTAACAACATGTACC 58.837 40.000 0.00 0.00 37.15 3.34
2364 4868 2.159099 GGCCGATCATGAGACAGTAACA 60.159 50.000 0.09 0.00 0.00 2.41
2508 5012 8.264347 ACAAAAACAAACAAGAGGGATATGTTT 58.736 29.630 0.00 0.00 45.39 2.83
2514 5018 6.293004 TGAACAAAAACAAACAAGAGGGAT 57.707 33.333 0.00 0.00 0.00 3.85
2537 5041 5.178809 GCGTTGACCTAGTTTGATGTAGTTT 59.821 40.000 0.00 0.00 0.00 2.66
2592 5148 4.701651 TGAATGAATTGGTAGTGCTGGAAG 59.298 41.667 0.00 0.00 0.00 3.46
2647 5203 2.839486 TGGTAGTGCTGGAAAGACAG 57.161 50.000 0.00 0.00 41.41 3.51
2675 5231 8.657712 ACCATAAAGTATAGATAGGGGAACAAC 58.342 37.037 0.00 0.00 0.00 3.32
2721 5280 8.694581 TGGATATCATTGAGATAAATGTTGCA 57.305 30.769 4.83 0.00 42.27 4.08
2865 5436 1.021202 CTCACCGACAAAACCAGCAA 58.979 50.000 0.00 0.00 0.00 3.91
2888 5463 0.251916 TCAAACCATGAGTAGGGGCG 59.748 55.000 0.00 0.00 33.04 6.13
2895 5474 4.277476 TCCTTTGTTGTCAAACCATGAGT 58.723 39.130 0.00 0.00 39.19 3.41
3139 5735 6.771267 CCATACTATGCATGAATCTGCCATAT 59.229 38.462 10.16 0.00 41.58 1.78
3240 5845 1.003118 AGTCATGCTAAGGCCGAACAA 59.997 47.619 0.00 0.00 37.74 2.83
3256 5861 4.032960 ACAATTGCCATCCAGTAAGTCA 57.967 40.909 5.05 0.00 0.00 3.41
3379 5988 2.485426 CGCAACCATGAGAGTTCAACAT 59.515 45.455 0.00 0.00 36.78 2.71
3536 6147 2.396651 TTTGGGGTCCGGACTCTCCT 62.397 60.000 32.76 0.00 33.30 3.69
3571 6182 9.522804 TGTGTGGTTTCATCAAGTTTTAATTAC 57.477 29.630 0.00 0.00 0.00 1.89
3605 6217 4.331717 CGTTGCTACATACCTAGTTTTGGG 59.668 45.833 0.00 0.00 0.00 4.12
3607 6219 4.201783 GGCGTTGCTACATACCTAGTTTTG 60.202 45.833 0.00 0.00 0.00 2.44
3647 6259 3.363787 ACCCATTGGTGAAGAAGCC 57.636 52.632 1.20 0.00 45.58 4.35
3659 6271 7.610580 TTTTGTTTTGGATTCTCTACCCATT 57.389 32.000 0.00 0.00 0.00 3.16
3665 6277 7.069331 TGCTTCCTTTTTGTTTTGGATTCTCTA 59.931 33.333 0.00 0.00 0.00 2.43
3672 6284 5.413309 TTCTGCTTCCTTTTTGTTTTGGA 57.587 34.783 0.00 0.00 0.00 3.53
3680 6292 4.655649 AGGGTTCATTTCTGCTTCCTTTTT 59.344 37.500 0.00 0.00 0.00 1.94
3694 6306 2.109834 TGTGATGGTGGAAGGGTTCATT 59.890 45.455 0.00 0.00 0.00 2.57
3714 6326 0.034767 TCAGGGCTTGCCATCTTCTG 60.035 55.000 14.04 10.61 0.00 3.02
3759 6371 0.696501 ATCGCCTTTGGGTGTAAGGT 59.303 50.000 0.00 0.00 43.34 3.50
3765 6379 1.672881 GAAGATCATCGCCTTTGGGTG 59.327 52.381 0.00 0.00 44.01 4.61
3775 6389 3.425359 GCAATATTGGCGGAAGATCATCG 60.425 47.826 17.02 0.00 0.00 3.84
3900 6514 2.106511 TGGGGTCTCTTTTCTGGTGAAG 59.893 50.000 0.00 0.00 33.28 3.02
3938 6554 4.141642 CCTGATGTGATTGTCATGGACCTA 60.142 45.833 0.00 0.00 0.00 3.08
3972 6588 1.067916 CTTGCAACAACCCAGTGCC 59.932 57.895 0.00 0.00 0.00 5.01
3973 6589 1.067916 CCTTGCAACAACCCAGTGC 59.932 57.895 0.00 0.00 0.00 4.40
3999 6618 1.276421 GCATCTAGTGAGTGGTGTGGT 59.724 52.381 0.00 0.00 0.00 4.16
4017 6636 4.742201 GAAGAGCGAGGCGGTGCA 62.742 66.667 0.00 0.00 37.83 4.57
4023 6642 3.612247 TTGCTGGGAAGAGCGAGGC 62.612 63.158 0.00 0.00 42.32 4.70
4087 6706 3.257393 CACTTCGGAGCATATATCTGGC 58.743 50.000 0.00 0.00 0.00 4.85
4158 6823 5.750067 AGAGTGTGCAATGTTTCATTTTGAC 59.250 36.000 0.00 0.00 0.00 3.18
4167 6832 4.275936 GGACTTGTAGAGTGTGCAATGTTT 59.724 41.667 0.00 0.00 39.19 2.83
4186 6851 1.542547 CGCAGTTTGGGTTGTAGGACT 60.543 52.381 0.00 0.00 0.00 3.85
4253 6918 3.526931 ACACACATGGATAAGGAGTCG 57.473 47.619 0.00 0.00 0.00 4.18
4369 7034 3.384168 AGGCCCACTCAACATGATAGTA 58.616 45.455 0.00 0.00 0.00 1.82
4395 7060 1.597742 AGGCAACACAGTTGCACTAG 58.402 50.000 29.06 0.00 46.58 2.57
4414 7079 3.181329 TGGTAGGAGCAGAAGATTCCAA 58.819 45.455 0.00 0.00 33.32 3.53
4475 7141 4.079443 CCCCCACCCATCTAGATTTGTAAA 60.079 45.833 1.33 0.00 0.00 2.01
4543 7209 3.749088 TGTTCCACTATGTACGCTTTTGG 59.251 43.478 0.00 0.00 0.00 3.28
4545 7211 4.638304 AGTGTTCCACTATGTACGCTTTT 58.362 39.130 0.00 0.00 43.46 2.27
4547 7213 3.955650 AGTGTTCCACTATGTACGCTT 57.044 42.857 0.00 0.00 43.46 4.68
4548 7214 3.380637 CCTAGTGTTCCACTATGTACGCT 59.619 47.826 4.68 0.00 44.49 5.07
4600 7266 4.796495 GGGCCCTTGGTAGCGTGG 62.796 72.222 17.04 0.00 0.00 4.94
4662 7328 7.680730 AGAATTGACGGTTATATAGGAGCAAT 58.319 34.615 0.00 0.00 0.00 3.56
4683 7349 3.458189 GCATCGGTGTGTAGCTAAGAAT 58.542 45.455 0.00 0.00 0.00 2.40
4704 7370 2.689034 GGGAGTGGGAGGTGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
4721 7387 1.473278 GGTGTCTTCTCGTAGTCAGGG 59.527 57.143 0.00 0.00 0.00 4.45
4756 7427 0.326048 AGTGAGCTAGGATGGTGGCT 60.326 55.000 0.00 0.00 37.77 4.75
4773 7447 0.178767 TTATCGCATGGCAGAGCAGT 59.821 50.000 13.99 5.17 0.00 4.40
4775 7449 0.178767 ACTTATCGCATGGCAGAGCA 59.821 50.000 13.99 3.23 0.00 4.26
4825 7500 4.209307 TGGCAACGGTGACAATCTTATA 57.791 40.909 6.48 0.00 40.96 0.98
4826 7501 3.066291 TGGCAACGGTGACAATCTTAT 57.934 42.857 6.48 0.00 40.96 1.73
4849 7524 0.729116 CTACCATTGTCGCTGCCTTG 59.271 55.000 0.00 0.00 0.00 3.61
4851 7526 0.391661 CACTACCATTGTCGCTGCCT 60.392 55.000 0.00 0.00 0.00 4.75
4910 7585 3.758931 GGGGCGAACATGGGCAAC 61.759 66.667 0.00 0.00 0.00 4.17
4911 7586 3.817210 TTGGGGCGAACATGGGCAA 62.817 57.895 0.00 0.00 0.00 4.52
4912 7587 4.292145 TTGGGGCGAACATGGGCA 62.292 61.111 0.00 0.00 0.00 5.36
4955 7630 7.992180 ACAGTTCAGAATCACAACATTTTTC 57.008 32.000 0.00 0.00 0.00 2.29
4972 7647 3.859411 AACGAAAAGGCAAACAGTTCA 57.141 38.095 0.00 0.00 0.00 3.18
4977 7652 3.654414 ACACAAAACGAAAAGGCAAACA 58.346 36.364 0.00 0.00 0.00 2.83
5064 7740 2.933495 AGTGTCGCACATACGTGTAT 57.067 45.000 0.00 0.00 45.50 2.29
5070 7746 6.010294 ACCTACATATAGTGTCGCACATAC 57.990 41.667 11.58 0.00 42.29 2.39
5223 7908 5.250774 TCTGGATCTAACTTGCCCTTAGTTT 59.749 40.000 0.00 0.00 37.12 2.66
5247 7942 7.166851 CCATATTCAACATCTCCTCTATGCTT 58.833 38.462 0.00 0.00 0.00 3.91
5257 7952 4.712476 AGGACTGCCATATTCAACATCTC 58.288 43.478 0.00 0.00 36.29 2.75
5311 8007 4.779696 TGGATGCATACATTTGTAGCTGA 58.220 39.130 7.78 0.00 36.35 4.26
5360 8058 8.039603 TGACATTTTTGCACCAACTAGTATAG 57.960 34.615 0.00 0.00 46.50 1.31
5427 8128 0.853530 ATAGTTTCTCATGGGCCCCC 59.146 55.000 22.27 0.00 0.00 5.40
5431 8132 2.355010 AGCCATAGTTTCTCATGGGC 57.645 50.000 2.99 0.00 41.76 5.36
5469 8170 3.643320 TGAGAGGATACAATGGTGGCTAG 59.357 47.826 0.00 0.00 41.41 3.42
5470 8171 3.388024 GTGAGAGGATACAATGGTGGCTA 59.612 47.826 0.00 0.00 41.41 3.93
5471 8172 2.171448 GTGAGAGGATACAATGGTGGCT 59.829 50.000 0.00 0.00 41.41 4.75
5472 8173 2.565841 GTGAGAGGATACAATGGTGGC 58.434 52.381 0.00 0.00 41.41 5.01
5473 8174 2.774234 AGGTGAGAGGATACAATGGTGG 59.226 50.000 0.00 0.00 41.41 4.61
5474 8175 4.080919 TGAAGGTGAGAGGATACAATGGTG 60.081 45.833 0.00 0.00 41.41 4.17
5475 8176 4.080863 GTGAAGGTGAGAGGATACAATGGT 60.081 45.833 0.00 0.00 41.41 3.55
5476 8177 4.163078 AGTGAAGGTGAGAGGATACAATGG 59.837 45.833 0.00 0.00 41.41 3.16
5477 8178 5.105187 TGAGTGAAGGTGAGAGGATACAATG 60.105 44.000 0.00 0.00 41.41 2.82
5478 8179 5.026121 TGAGTGAAGGTGAGAGGATACAAT 58.974 41.667 0.00 0.00 41.41 2.71
5511 8212 2.621070 GAAGGAGGGTCCATATGCCTA 58.379 52.381 0.00 0.00 39.61 3.93
5517 8218 2.478292 GACAAGGAAGGAGGGTCCATA 58.522 52.381 0.00 0.00 39.61 2.74
5524 8225 0.391793 GCGAAGGACAAGGAAGGAGG 60.392 60.000 0.00 0.00 0.00 4.30
5542 8243 2.690778 GCACACGACCAATGAGGGC 61.691 63.158 0.00 0.00 44.64 5.19
5543 8244 2.390599 CGCACACGACCAATGAGGG 61.391 63.158 0.00 0.00 43.93 4.30
5560 8261 0.673985 TTATCTCCACGCATCTCCCG 59.326 55.000 0.00 0.00 0.00 5.14
5612 8313 2.437651 TCATGGTCGCCTTTATGATCCA 59.562 45.455 0.00 0.00 0.00 3.41
5687 8389 9.474920 CTACAAAAATAACATGTTGTTCACCAT 57.525 29.630 21.42 8.69 40.22 3.55
5688 8390 7.923344 CCTACAAAAATAACATGTTGTTCACCA 59.077 33.333 21.42 0.00 40.22 4.17
5689 8391 7.923878 ACCTACAAAAATAACATGTTGTTCACC 59.076 33.333 21.42 0.00 40.22 4.02
5691 8393 9.307121 CAACCTACAAAAATAACATGTTGTTCA 57.693 29.630 21.42 0.80 40.22 3.18
5692 8394 8.272866 GCAACCTACAAAAATAACATGTTGTTC 58.727 33.333 21.42 0.87 40.22 3.18
5699 8404 6.508777 ACGTTGCAACCTACAAAAATAACAT 58.491 32.000 23.42 0.00 0.00 2.71
5700 8405 5.892568 ACGTTGCAACCTACAAAAATAACA 58.107 33.333 23.42 0.00 0.00 2.41
5701 8406 6.579666 CCTACGTTGCAACCTACAAAAATAAC 59.420 38.462 23.42 0.00 0.00 1.89
5702 8407 6.294065 CCCTACGTTGCAACCTACAAAAATAA 60.294 38.462 23.42 0.00 0.00 1.40
5704 8409 4.022676 CCCTACGTTGCAACCTACAAAAAT 60.023 41.667 23.42 1.37 0.00 1.82
5720 8425 1.117150 ACACAAGACACACCCTACGT 58.883 50.000 0.00 0.00 0.00 3.57
5835 8541 1.098050 CCCAAACACTAGCTGATGCC 58.902 55.000 0.00 0.00 40.80 4.40
5842 8548 2.095919 CGCAAGTTACCCAAACACTAGC 60.096 50.000 0.00 0.00 40.83 3.42
5877 8583 0.668706 CCATCATCACTCCGCGATCC 60.669 60.000 8.23 0.00 0.00 3.36
5912 8618 4.184629 CACCATGTCTTAACTAGCACTCC 58.815 47.826 0.00 0.00 0.00 3.85
5988 8694 3.118884 GGGAGTACTTCAATTGCCGACTA 60.119 47.826 2.92 0.00 0.00 2.59
6000 8706 6.926630 AATATGGATCAGAGGGAGTACTTC 57.073 41.667 0.00 0.00 0.00 3.01
6002 8708 7.109901 AGTAATATGGATCAGAGGGAGTACT 57.890 40.000 0.00 0.00 0.00 2.73
6013 8719 7.468494 CGTTTGAATGGCAAGTAATATGGATCA 60.468 37.037 0.00 0.00 37.87 2.92
6029 8735 5.050091 GTGCTAGATACATCCGTTTGAATGG 60.050 44.000 0.00 0.00 36.38 3.16
6068 8774 0.953727 TGTGGCTCAAACAGATGTGC 59.046 50.000 0.00 0.00 38.69 4.57
6069 8775 3.713858 TTTGTGGCTCAAACAGATGTG 57.286 42.857 10.43 0.00 40.56 3.21
6084 8790 7.922382 ACTCCCTCCTATCCATATTATTTGTG 58.078 38.462 0.00 0.00 0.00 3.33
6113 8819 5.104360 AGCCTAGATTTTCACCAAGATAGCA 60.104 40.000 0.00 0.00 0.00 3.49
6121 8827 2.041620 AGCCAAGCCTAGATTTTCACCA 59.958 45.455 0.00 0.00 0.00 4.17
6152 8858 8.682936 AAAATGTTGAAGAGTGTCATCTAGTT 57.317 30.769 0.00 0.00 0.00 2.24
6186 8892 1.407979 CGGTACCCCATAGTCACACTC 59.592 57.143 6.25 0.00 0.00 3.51
6187 8893 1.006281 TCGGTACCCCATAGTCACACT 59.994 52.381 6.25 0.00 0.00 3.55
6270 8976 5.967088 TGAGTAGAGGAGCATAGTTTTCAC 58.033 41.667 0.00 0.00 0.00 3.18
6319 9025 3.846588 TCAGGGCTACCAAGAGATTCTTT 59.153 43.478 0.00 0.00 33.78 2.52
6337 9043 2.498481 TCCTTGTTACCCATACGTCAGG 59.502 50.000 0.00 0.00 0.00 3.86
6339 9045 3.579586 AGTTCCTTGTTACCCATACGTCA 59.420 43.478 0.00 0.00 0.00 4.35
6340 9046 4.198028 AGTTCCTTGTTACCCATACGTC 57.802 45.455 0.00 0.00 0.00 4.34
6341 9047 4.320870 CAAGTTCCTTGTTACCCATACGT 58.679 43.478 0.00 0.00 36.79 3.57
6342 9048 3.126343 GCAAGTTCCTTGTTACCCATACG 59.874 47.826 5.92 0.00 42.77 3.06
6423 9130 7.469456 GCCACAATTAGAAACCTCACAAACTAA 60.469 37.037 0.00 0.00 0.00 2.24
6499 9207 4.033932 GCGTTTCTGAACCTTGCAATTTTT 59.966 37.500 0.00 0.00 31.93 1.94
6520 9228 6.093633 AGCTAAAACCCACTTAGAATAAAGCG 59.906 38.462 0.00 0.00 0.00 4.68
6591 9308 5.300792 AGTCTCGAAAGGGAGAGATTATGTC 59.699 44.000 0.00 0.00 44.63 3.06
6598 9315 4.664392 AGTAAAGTCTCGAAAGGGAGAGA 58.336 43.478 0.00 0.00 44.63 3.10
6772 9501 8.964476 AAGGTACATGTAACTGAAAGGATATG 57.036 34.615 23.87 0.00 39.30 1.78
6776 9505 7.391620 CCTAAAGGTACATGTAACTGAAAGGA 58.608 38.462 27.29 11.27 39.30 3.36
6821 9552 3.059597 CGCTAAAACTGATATGGCGAAGG 60.060 47.826 0.00 0.00 43.05 3.46
6827 9558 2.549754 CCTGCCGCTAAAACTGATATGG 59.450 50.000 0.00 0.00 0.00 2.74
6994 9978 2.632377 ACTTGTGCCTCCATTGTATCG 58.368 47.619 0.00 0.00 0.00 2.92
7060 10044 2.910688 TTGTAGATGCGAATCTCCCC 57.089 50.000 9.87 0.00 32.36 4.81
7242 10229 7.293771 TCCCCAATTGAATGGTTAGCTATAGTA 59.706 37.037 7.12 0.00 38.91 1.82
7243 10230 6.102615 TCCCCAATTGAATGGTTAGCTATAGT 59.897 38.462 7.12 0.00 38.91 2.12
7250 10244 5.016173 TGAGTTCCCCAATTGAATGGTTAG 58.984 41.667 7.12 0.00 38.91 2.34
7379 10393 2.933495 TAGCTAGCACAGTACCAACG 57.067 50.000 18.83 0.00 0.00 4.10
7446 10460 1.895798 TCGCTGACCATGTCTCTCTTT 59.104 47.619 0.00 0.00 33.15 2.52
7458 10472 3.829886 TCATTCATTTTGTCGCTGACC 57.170 42.857 6.30 0.00 0.00 4.02
7606 10991 5.507985 GCATACTTGGCAGGAATGGATAAAC 60.508 44.000 2.65 0.00 0.00 2.01
7920 11306 6.489022 ACACCCCTAATTTGTACTTTCACTTC 59.511 38.462 0.00 0.00 0.00 3.01
8048 11439 3.586892 CCCACCTCTCGTCTTACTTTTC 58.413 50.000 0.00 0.00 0.00 2.29
8060 11451 1.002011 GCTTTCACCCCCACCTCTC 60.002 63.158 0.00 0.00 0.00 3.20
8061 11452 1.068352 AAGCTTTCACCCCCACCTCT 61.068 55.000 0.00 0.00 0.00 3.69
8119 11511 3.664930 GCGTCTGCAACAAGATGAC 57.335 52.632 0.00 0.00 42.15 3.06
8135 11527 5.506317 GGGAAATATGGTTGATCTTCTTGCG 60.506 44.000 0.00 0.00 0.00 4.85
8272 11665 1.834188 ATTAAGCCACTTTCCACCGG 58.166 50.000 0.00 0.00 0.00 5.28
8322 11715 7.441890 TCGTTGCCTGTTTCATTTAAGATAA 57.558 32.000 0.00 0.00 0.00 1.75
8479 11872 8.306761 CCTTTGTTCTTGCCTCTATACATTTTT 58.693 33.333 0.00 0.00 0.00 1.94
8602 11996 7.366226 AGAAGGAACTAGAGGGATCTCATAAA 58.634 38.462 0.00 0.00 39.52 1.40
8604 11998 6.538209 AGAAGGAACTAGAGGGATCTCATA 57.462 41.667 0.00 0.00 39.52 2.15
8605 11999 5.417170 AGAAGGAACTAGAGGGATCTCAT 57.583 43.478 0.00 0.00 39.52 2.90
8607 12001 5.683770 GCAAAGAAGGAACTAGAGGGATCTC 60.684 48.000 0.00 0.00 38.49 2.75
8608 12002 4.163268 GCAAAGAAGGAACTAGAGGGATCT 59.837 45.833 0.00 0.00 38.49 2.75
8609 12003 4.163268 AGCAAAGAAGGAACTAGAGGGATC 59.837 45.833 0.00 0.00 38.49 3.36
8669 12075 2.025887 AGCCCATGAAAACCTACAGGAG 60.026 50.000 1.29 0.00 38.94 3.69
8671 12077 2.290896 TGAGCCCATGAAAACCTACAGG 60.291 50.000 0.00 0.00 42.17 4.00
8672 12078 3.012518 CTGAGCCCATGAAAACCTACAG 58.987 50.000 0.00 0.00 0.00 2.74
8760 12166 3.996363 CCATTCAGGTTAAAAGCAAAGGC 59.004 43.478 0.00 0.00 41.61 4.35
8858 12267 8.152246 CCAATTATTGCCACCATATTCAAGAAT 58.848 33.333 0.00 0.52 33.45 2.40
8937 12346 5.828299 AAATGTACATAATTGTGGGGTCG 57.172 39.130 9.21 0.00 36.53 4.79
8998 12411 7.288560 AGTACCGTCCTCTAATGAGATTCTTA 58.711 38.462 0.00 0.00 42.73 2.10
9012 12425 4.978083 TTCAATGACTAGTACCGTCCTC 57.022 45.455 0.00 0.00 0.00 3.71
9017 12430 8.697846 TTAAGAACATTCAATGACTAGTACCG 57.302 34.615 3.79 0.00 0.00 4.02
9101 12533 2.954318 TGACTATTGTACCTAGGCGGAC 59.046 50.000 9.30 5.36 36.31 4.79
9105 12537 5.914033 TCATGTTGACTATTGTACCTAGGC 58.086 41.667 9.30 0.00 0.00 3.93
9108 12540 7.778083 ACGAATCATGTTGACTATTGTACCTA 58.222 34.615 0.00 0.00 0.00 3.08
9123 12555 4.009675 ACTTTGTGCCATACGAATCATGT 58.990 39.130 0.00 0.00 32.30 3.21
9126 12558 3.190327 CCAACTTTGTGCCATACGAATCA 59.810 43.478 0.00 0.00 32.30 2.57
9132 12564 2.235016 TGGACCAACTTTGTGCCATAC 58.765 47.619 0.00 0.00 0.00 2.39
9181 12613 6.582295 CCTCATGTTTTGTTATTTCTTGTCGG 59.418 38.462 0.00 0.00 0.00 4.79
9256 12688 6.834959 AGCAAGATATTTGACTCATACACG 57.165 37.500 0.00 0.00 0.00 4.49
9398 12830 3.252458 TGTCGTGATTGAGACGAGAGAAA 59.748 43.478 0.00 0.00 45.96 2.52
9421 12853 0.532573 GTGGCGAAGGATCACTCTCA 59.467 55.000 0.00 0.00 0.00 3.27
9422 12854 0.526524 CGTGGCGAAGGATCACTCTC 60.527 60.000 0.00 0.00 0.00 3.20
9441 12873 3.983044 AACAAGGGTGGATAGAGTGTC 57.017 47.619 0.00 0.00 0.00 3.67
9455 12887 4.605640 ATGTTGATGGGACAAAACAAGG 57.394 40.909 5.39 0.00 46.67 3.61
9456 12888 5.599732 TCAATGTTGATGGGACAAAACAAG 58.400 37.500 5.39 3.13 46.67 3.16
9481 12914 4.539870 CACTTGATGCTCAAACGTTGAAT 58.460 39.130 0.00 0.00 39.58 2.57
9518 12951 3.484649 GTGCAAGCAAATAATGAGCATCG 59.515 43.478 0.00 0.00 38.61 3.84
9542 12975 4.609301 CCTTGGAGATTTTTCCATACCCA 58.391 43.478 0.00 0.00 46.22 4.51
9600 13033 4.623932 TCAAAGGAGCAATAGTCACTGT 57.376 40.909 0.00 0.00 0.00 3.55
9624 13057 2.431454 ATATGTGGTGGCCTCGCGA 61.431 57.895 9.26 9.26 0.00 5.87
9628 13061 2.546494 GCGCATATGTGGTGGCCTC 61.546 63.158 17.63 0.00 0.00 4.70
9729 13163 1.751351 TGGTCTCAATAGCTCCACTCG 59.249 52.381 0.00 0.00 0.00 4.18
9775 13209 3.940723 GGATCGTTCCCTAGTGTCG 57.059 57.895 0.63 0.00 35.84 4.35
9827 13261 4.017222 ACATCAATTTTGATCCTCTCCCCA 60.017 41.667 2.83 0.00 45.62 4.96
9832 13266 8.423349 TGTTTTTCACATCAATTTTGATCCTCT 58.577 29.630 2.83 0.00 45.62 3.69
9833 13267 8.592105 TGTTTTTCACATCAATTTTGATCCTC 57.408 30.769 2.83 0.00 45.62 3.71
9834 13268 8.995220 CATGTTTTTCACATCAATTTTGATCCT 58.005 29.630 2.83 0.00 43.17 3.24
9835 13269 8.776470 ACATGTTTTTCACATCAATTTTGATCC 58.224 29.630 2.83 0.00 43.17 3.36
9836 13270 9.801714 GACATGTTTTTCACATCAATTTTGATC 57.198 29.630 0.00 0.00 43.17 2.92
9837 13271 8.776470 GGACATGTTTTTCACATCAATTTTGAT 58.224 29.630 0.00 0.00 43.17 2.57
9838 13272 7.042858 CGGACATGTTTTTCACATCAATTTTGA 60.043 33.333 0.00 0.00 43.17 2.69
9839 13273 7.064674 CGGACATGTTTTTCACATCAATTTTG 58.935 34.615 0.00 0.00 43.17 2.44
9840 13274 6.202570 CCGGACATGTTTTTCACATCAATTTT 59.797 34.615 0.00 0.00 43.17 1.82
9841 13275 5.695816 CCGGACATGTTTTTCACATCAATTT 59.304 36.000 0.00 0.00 43.17 1.82
9842 13276 5.229423 CCGGACATGTTTTTCACATCAATT 58.771 37.500 0.00 0.00 43.17 2.32
9843 13277 4.321899 CCCGGACATGTTTTTCACATCAAT 60.322 41.667 0.73 0.00 43.17 2.57
9844 13278 3.005261 CCCGGACATGTTTTTCACATCAA 59.995 43.478 0.73 0.00 43.17 2.57
9845 13279 2.556189 CCCGGACATGTTTTTCACATCA 59.444 45.455 0.73 0.00 43.17 3.07
9846 13280 2.671070 GCCCGGACATGTTTTTCACATC 60.671 50.000 0.73 0.00 43.17 3.06
9848 13282 0.671251 GCCCGGACATGTTTTTCACA 59.329 50.000 0.73 0.00 40.71 3.58
9849 13283 0.386731 CGCCCGGACATGTTTTTCAC 60.387 55.000 0.73 0.00 0.00 3.18
9850 13284 1.519751 CCGCCCGGACATGTTTTTCA 61.520 55.000 0.73 0.00 37.50 2.69
9851 13285 1.211709 CCGCCCGGACATGTTTTTC 59.788 57.895 0.73 0.00 37.50 2.29
9852 13286 1.520600 GACCGCCCGGACATGTTTTT 61.521 55.000 14.44 0.00 38.96 1.94
9853 13287 1.969589 GACCGCCCGGACATGTTTT 60.970 57.895 14.44 0.00 38.96 2.43
9854 13288 2.359478 GACCGCCCGGACATGTTT 60.359 61.111 14.44 0.00 38.96 2.83
9855 13289 3.310860 GAGACCGCCCGGACATGTT 62.311 63.158 14.44 0.00 38.96 2.71
9856 13290 3.771160 GAGACCGCCCGGACATGT 61.771 66.667 14.44 0.00 38.96 3.21
9857 13291 2.593468 AATGAGACCGCCCGGACATG 62.593 60.000 14.44 0.00 38.96 3.21
9858 13292 1.910580 AAATGAGACCGCCCGGACAT 61.911 55.000 14.44 12.10 38.96 3.06
9859 13293 2.515996 GAAATGAGACCGCCCGGACA 62.516 60.000 14.44 10.44 38.96 4.02
9860 13294 1.814169 GAAATGAGACCGCCCGGAC 60.814 63.158 14.44 7.44 38.96 4.79
9861 13295 1.550130 AAGAAATGAGACCGCCCGGA 61.550 55.000 14.44 0.00 38.96 5.14
9862 13296 1.078426 AAGAAATGAGACCGCCCGG 60.078 57.895 4.96 4.96 42.03 5.73
9863 13297 0.108138 AGAAGAAATGAGACCGCCCG 60.108 55.000 0.00 0.00 0.00 6.13
9864 13298 1.657822 GAGAAGAAATGAGACCGCCC 58.342 55.000 0.00 0.00 0.00 6.13
9865 13299 1.066143 TGGAGAAGAAATGAGACCGCC 60.066 52.381 0.00 0.00 0.00 6.13
9866 13300 2.003301 GTGGAGAAGAAATGAGACCGC 58.997 52.381 0.00 0.00 0.00 5.68
9867 13301 3.319137 TGTGGAGAAGAAATGAGACCG 57.681 47.619 0.00 0.00 0.00 4.79
9868 13302 7.256756 CAATATGTGGAGAAGAAATGAGACC 57.743 40.000 0.00 0.00 0.00 3.85
9884 13318 2.158928 CCCAAACATGCCCCAATATGTG 60.159 50.000 0.00 0.00 37.57 3.21
9885 13319 2.117865 CCCAAACATGCCCCAATATGT 58.882 47.619 0.00 0.00 39.08 2.29
9886 13320 1.417145 CCCCAAACATGCCCCAATATG 59.583 52.381 0.00 0.00 0.00 1.78
9887 13321 1.695340 CCCCCAAACATGCCCCAATAT 60.695 52.381 0.00 0.00 0.00 1.28
9888 13322 0.326048 CCCCCAAACATGCCCCAATA 60.326 55.000 0.00 0.00 0.00 1.90
9889 13323 1.616025 CCCCCAAACATGCCCCAAT 60.616 57.895 0.00 0.00 0.00 3.16
9890 13324 2.203907 CCCCCAAACATGCCCCAA 60.204 61.111 0.00 0.00 0.00 4.12
9891 13325 3.196385 TCCCCCAAACATGCCCCA 61.196 61.111 0.00 0.00 0.00 4.96
9892 13326 2.364186 CTCCCCCAAACATGCCCC 60.364 66.667 0.00 0.00 0.00 5.80
9893 13327 1.682344 GACTCCCCCAAACATGCCC 60.682 63.158 0.00 0.00 0.00 5.36
9894 13328 0.623723 TAGACTCCCCCAAACATGCC 59.376 55.000 0.00 0.00 0.00 4.40
9895 13329 2.492088 GTTTAGACTCCCCCAAACATGC 59.508 50.000 0.00 0.00 32.43 4.06
9896 13330 3.761897 TGTTTAGACTCCCCCAAACATG 58.238 45.455 0.00 0.00 36.31 3.21
9897 13331 4.675063 ATGTTTAGACTCCCCCAAACAT 57.325 40.909 7.25 7.25 43.32 2.71
9898 13332 5.505780 CATATGTTTAGACTCCCCCAAACA 58.494 41.667 3.58 3.58 42.98 2.83
9899 13333 4.887655 CCATATGTTTAGACTCCCCCAAAC 59.112 45.833 1.24 0.00 0.00 2.93
9900 13334 4.079443 CCCATATGTTTAGACTCCCCCAAA 60.079 45.833 1.24 0.00 0.00 3.28
9901 13335 3.461831 CCCATATGTTTAGACTCCCCCAA 59.538 47.826 1.24 0.00 0.00 4.12
9902 13336 3.053077 CCCATATGTTTAGACTCCCCCA 58.947 50.000 1.24 0.00 0.00 4.96
9903 13337 2.375509 CCCCATATGTTTAGACTCCCCC 59.624 54.545 1.24 0.00 0.00 5.40
9904 13338 2.224793 GCCCCATATGTTTAGACTCCCC 60.225 54.545 1.24 0.00 0.00 4.81
9905 13339 2.441750 TGCCCCATATGTTTAGACTCCC 59.558 50.000 1.24 0.00 0.00 4.30
9906 13340 3.496870 CCTGCCCCATATGTTTAGACTCC 60.497 52.174 1.24 0.00 0.00 3.85
9907 13341 3.136626 ACCTGCCCCATATGTTTAGACTC 59.863 47.826 1.24 0.00 0.00 3.36
9908 13342 3.123273 ACCTGCCCCATATGTTTAGACT 58.877 45.455 1.24 0.00 0.00 3.24
9909 13343 3.577805 ACCTGCCCCATATGTTTAGAC 57.422 47.619 1.24 0.00 0.00 2.59
9910 13344 3.433031 CGAACCTGCCCCATATGTTTAGA 60.433 47.826 1.24 0.00 0.00 2.10
9911 13345 2.878406 CGAACCTGCCCCATATGTTTAG 59.122 50.000 1.24 0.00 0.00 1.85
9912 13346 2.422235 CCGAACCTGCCCCATATGTTTA 60.422 50.000 1.24 0.00 0.00 2.01
9913 13347 1.684869 CCGAACCTGCCCCATATGTTT 60.685 52.381 1.24 0.00 0.00 2.83
9914 13348 0.106719 CCGAACCTGCCCCATATGTT 60.107 55.000 1.24 0.00 0.00 2.71
9915 13349 0.986019 TCCGAACCTGCCCCATATGT 60.986 55.000 1.24 0.00 0.00 2.29
9916 13350 0.182537 TTCCGAACCTGCCCCATATG 59.817 55.000 0.00 0.00 0.00 1.78
9917 13351 0.474184 CTTCCGAACCTGCCCCATAT 59.526 55.000 0.00 0.00 0.00 1.78
9918 13352 1.912220 CTTCCGAACCTGCCCCATA 59.088 57.895 0.00 0.00 0.00 2.74
9919 13353 2.677228 CTTCCGAACCTGCCCCAT 59.323 61.111 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.