Multiple sequence alignment - TraesCS3A01G394500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G394500 chr3A 100.000 6573 0 0 1 6573 642033997 642040569 0.000000e+00 12139
1 TraesCS3A01G394500 chr3A 79.562 274 29 12 6304 6573 642125179 642125429 3.150000e-38 171
2 TraesCS3A01G394500 chr3B 92.805 4142 200 44 677 4756 664891785 664895890 0.000000e+00 5908
3 TraesCS3A01G394500 chr3B 89.444 1620 92 37 4936 6533 664895861 664897423 0.000000e+00 1971
4 TraesCS3A01G394500 chr3B 88.675 415 24 4 1 414 664890567 664890959 9.910000e-133 484
5 TraesCS3A01G394500 chr3B 84.236 203 11 6 675 868 664891263 664891453 1.880000e-40 178
6 TraesCS3A01G394500 chr3B 85.315 143 17 2 6321 6463 664912110 664912248 1.910000e-30 145
7 TraesCS3A01G394500 chr3B 96.774 62 2 0 4091 4152 201564466 201564527 3.240000e-18 104
8 TraesCS3A01G394500 chr3D 89.659 4168 252 67 1 4093 503737844 503741907 0.000000e+00 5144
9 TraesCS3A01G394500 chr3D 91.541 863 42 10 5113 5966 503742655 503743495 0.000000e+00 1160
10 TraesCS3A01G394500 chr3D 90.291 515 35 9 6030 6533 503743516 503744026 0.000000e+00 660
11 TraesCS3A01G394500 chr3D 92.448 384 28 1 4373 4756 503742088 503742470 1.250000e-151 547
12 TraesCS3A01G394500 chr3D 85.714 231 10 10 4943 5173 503742450 503742657 8.580000e-54 222
13 TraesCS3A01G394500 chr3D 84.713 157 18 4 6307 6463 503749163 503749313 1.140000e-32 152
14 TraesCS3A01G394500 chr5B 86.579 760 54 19 5633 6376 31187781 31188508 0.000000e+00 795
15 TraesCS3A01G394500 chr5B 86.888 572 43 12 5633 6195 31272495 31273043 4.360000e-171 612
16 TraesCS3A01G394500 chr5B 93.227 251 10 6 4718 4963 214934693 214934941 4.840000e-96 363
17 TraesCS3A01G394500 chr1B 100.000 191 0 0 4754 4944 110623002 110622812 2.920000e-93 353
18 TraesCS3A01G394500 chr1B 99.482 193 0 1 4751 4942 33923252 33923060 3.770000e-92 350
19 TraesCS3A01G394500 chr7A 100.000 190 0 0 4757 4946 105168808 105168997 1.050000e-92 351
20 TraesCS3A01G394500 chr4A 100.000 190 0 0 4754 4943 20234725 20234536 1.050000e-92 351
21 TraesCS3A01G394500 chr4D 98.477 197 2 1 4757 4953 478512368 478512173 4.880000e-91 346
22 TraesCS3A01G394500 chr2A 97.059 204 2 3 4757 4960 498090118 498089919 2.270000e-89 340
23 TraesCS3A01G394500 chrUn 91.803 244 11 9 4725 4964 277314264 277314026 1.370000e-86 331
24 TraesCS3A01G394500 chrUn 95.161 62 3 0 4091 4152 53262509 53262570 1.510000e-16 99
25 TraesCS3A01G394500 chrUn 95.161 62 3 0 4091 4152 331843021 331843082 1.510000e-16 99
26 TraesCS3A01G394500 chrUn 95.161 62 3 0 4091 4152 351215074 351215135 1.510000e-16 99
27 TraesCS3A01G394500 chrUn 95.161 62 3 0 4091 4152 354743897 354743958 1.510000e-16 99
28 TraesCS3A01G394500 chrUn 95.161 62 3 0 4091 4152 363863611 363863672 1.510000e-16 99
29 TraesCS3A01G394500 chrUn 95.161 62 3 0 4091 4152 392771522 392771583 1.510000e-16 99
30 TraesCS3A01G394500 chrUn 96.610 59 2 0 4094 4152 430358295 430358237 1.510000e-16 99
31 TraesCS3A01G394500 chr2B 91.803 244 11 9 4725 4964 314778850 314779088 1.370000e-86 331


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G394500 chr3A 642033997 642040569 6572 False 12139.00 12139 100.0000 1 6573 1 chr3A.!!$F1 6572
1 TraesCS3A01G394500 chr3B 664890567 664897423 6856 False 2135.25 5908 88.7900 1 6533 4 chr3B.!!$F3 6532
2 TraesCS3A01G394500 chr3D 503737844 503744026 6182 False 1546.60 5144 89.9306 1 6533 5 chr3D.!!$F2 6532
3 TraesCS3A01G394500 chr5B 31187781 31188508 727 False 795.00 795 86.5790 5633 6376 1 chr5B.!!$F1 743
4 TraesCS3A01G394500 chr5B 31272495 31273043 548 False 612.00 612 86.8880 5633 6195 1 chr5B.!!$F2 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 416 0.107945 ATCTCACTCAAAGCGAGCCC 60.108 55.0 0.00 0.00 46.63 5.19 F
584 722 0.179006 GCCTCTTATTGGGCCTCCAG 60.179 60.0 4.53 0.00 45.04 3.86 F
1326 2015 0.460459 GAGAGCCTGTAAACCCGCTC 60.460 60.0 9.39 9.39 46.49 5.03 F
2133 2836 0.037697 TACTGTTACCTGCACTGCGG 60.038 55.0 2.49 2.49 34.23 5.69 F
2135 2838 0.037697 CTGTTACCTGCACTGCGGTA 60.038 55.0 16.17 16.17 36.94 4.02 F
2136 2839 0.611200 TGTTACCTGCACTGCGGTAT 59.389 50.0 19.05 7.16 37.47 2.73 F
3566 4311 1.134226 GTGTCGACACCGGTAACTTG 58.866 55.0 33.62 0.00 40.85 3.16 F
4817 5662 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 2831 0.248336 CATGCAGTGCAATACCGCAG 60.248 55.000 23.90 1.13 45.23 5.18 R
2130 2833 0.664761 ATCATGCAGTGCAATACCGC 59.335 50.000 23.90 0.00 43.62 5.68 R
2908 3650 0.447801 ATTTCTGAATCACCACGCGC 59.552 50.000 5.73 0.00 0.00 6.86 R
3040 3783 0.875059 GGGAGGTTTGAGAAGCAACG 59.125 55.000 0.00 0.00 35.91 4.10 R
3566 4311 1.134946 GAGTCTGGCTGAGAGAGAAGC 59.865 57.143 0.00 0.00 38.76 3.86 R
3596 4341 2.030717 CGTGTCTACAAGACTGAGTGCT 60.031 50.000 8.42 0.00 45.27 4.40 R
5489 6392 0.032130 GGCGAATCGTCCAGCAGATA 59.968 55.000 4.07 0.00 0.00 1.98 R
5859 6762 0.166814 CTTCAAGTAGCAGCGGCAAC 59.833 55.000 12.44 0.00 44.61 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 3.550437 AGTGTATCCATTCCAGAGCAC 57.450 47.619 0.00 0.00 0.00 4.40
137 139 3.357079 CAAGGCCACACCGACAGC 61.357 66.667 5.01 0.00 46.52 4.40
169 189 1.946768 TGACCGGAAGCACAAAAGAAG 59.053 47.619 9.46 0.00 0.00 2.85
170 190 2.218603 GACCGGAAGCACAAAAGAAGA 58.781 47.619 9.46 0.00 0.00 2.87
171 191 1.947456 ACCGGAAGCACAAAAGAAGAC 59.053 47.619 9.46 0.00 0.00 3.01
172 192 1.946768 CCGGAAGCACAAAAGAAGACA 59.053 47.619 0.00 0.00 0.00 3.41
173 193 2.554032 CCGGAAGCACAAAAGAAGACAT 59.446 45.455 0.00 0.00 0.00 3.06
174 194 3.558505 CGGAAGCACAAAAGAAGACATG 58.441 45.455 0.00 0.00 0.00 3.21
175 195 3.250762 CGGAAGCACAAAAGAAGACATGA 59.749 43.478 0.00 0.00 0.00 3.07
176 196 4.261155 CGGAAGCACAAAAGAAGACATGAA 60.261 41.667 0.00 0.00 0.00 2.57
177 197 4.978580 GGAAGCACAAAAGAAGACATGAAC 59.021 41.667 0.00 0.00 0.00 3.18
178 198 5.221126 GGAAGCACAAAAGAAGACATGAACT 60.221 40.000 0.00 0.00 0.00 3.01
179 199 5.841957 AGCACAAAAGAAGACATGAACTT 57.158 34.783 0.00 4.59 0.00 2.66
180 200 5.825507 AGCACAAAAGAAGACATGAACTTC 58.174 37.500 20.77 20.77 42.53 3.01
181 201 5.357878 AGCACAAAAGAAGACATGAACTTCA 59.642 36.000 25.87 0.00 44.01 3.02
182 202 5.684626 GCACAAAAGAAGACATGAACTTCAG 59.315 40.000 25.87 18.58 44.01 3.02
183 203 6.458751 GCACAAAAGAAGACATGAACTTCAGA 60.459 38.462 25.87 0.00 44.01 3.27
184 204 7.130917 CACAAAAGAAGACATGAACTTCAGAG 58.869 38.462 25.87 18.57 44.01 3.35
185 205 7.011763 CACAAAAGAAGACATGAACTTCAGAGA 59.988 37.037 25.87 0.00 44.01 3.10
186 206 7.554118 ACAAAAGAAGACATGAACTTCAGAGAA 59.446 33.333 25.87 0.00 44.01 2.87
211 231 3.262420 GAGCTCAGATTACCTCGCAAAA 58.738 45.455 9.40 0.00 0.00 2.44
310 330 2.592861 GGGAGATGACGGGCATGC 60.593 66.667 9.90 9.90 37.34 4.06
332 352 0.907230 AGAGACCTCCTCCTGTTGCC 60.907 60.000 0.00 0.00 42.97 4.52
373 393 2.573340 CAATGGCGGCCCAAGAAC 59.427 61.111 17.97 0.00 46.14 3.01
396 416 0.107945 ATCTCACTCAAAGCGAGCCC 60.108 55.000 0.00 0.00 46.63 5.19
427 447 3.637273 GGTTCGGGGCACAGTCCT 61.637 66.667 0.00 0.00 0.00 3.85
441 461 1.080025 GTCCTTGGAGAACGACGGG 60.080 63.158 0.00 0.00 0.00 5.28
443 463 2.280552 CCTTGGAGAACGACGGGGA 61.281 63.158 0.00 0.00 0.00 4.81
485 505 3.866582 GTGGAGGGGAGCCGGATG 61.867 72.222 5.05 0.00 0.00 3.51
506 526 2.418334 GCCCGGATCTTACTCGAAACTT 60.418 50.000 0.73 0.00 0.00 2.66
523 630 1.251251 CTTTGGGGAGAAAGTGGCAG 58.749 55.000 0.00 0.00 0.00 4.85
584 722 0.179006 GCCTCTTATTGGGCCTCCAG 60.179 60.000 4.53 0.00 45.04 3.86
652 798 1.710809 CCAGGGGGAAGAAGAAAAGGA 59.289 52.381 0.00 0.00 35.59 3.36
653 799 2.291217 CCAGGGGGAAGAAGAAAAGGAG 60.291 54.545 0.00 0.00 35.59 3.69
668 814 1.509923 GGAGGTCGTACTTCCGTGG 59.490 63.158 0.00 0.00 34.57 4.94
677 823 1.812686 TACTTCCGTGGACGCTTGCT 61.813 55.000 0.00 0.00 38.18 3.91
739 885 1.370172 AGTTCGTCGACGCAGACAC 60.370 57.895 32.19 20.83 40.98 3.67
772 918 3.998672 GTCGTCGCAGGTCCCCAA 61.999 66.667 0.00 0.00 0.00 4.12
854 1526 3.073735 AGCAGAGCAGAGACCGGG 61.074 66.667 6.32 0.00 0.00 5.73
877 1549 1.602920 CGCAAAACAAAAGGAGGAGGC 60.603 52.381 0.00 0.00 0.00 4.70
899 1577 1.576421 GGCCGAAAACACTGAGCAG 59.424 57.895 0.00 0.00 0.00 4.24
1117 1803 3.699894 CTGCCCTCTCCGCTGTGT 61.700 66.667 0.00 0.00 0.00 3.72
1149 1838 4.028026 CGTGTGTTGTTTTCATTTTCGGAC 60.028 41.667 0.00 0.00 0.00 4.79
1156 1845 1.970092 TTCATTTTCGGACGGGTTGT 58.030 45.000 0.00 0.00 0.00 3.32
1251 1940 0.806492 GGTCTCGGAGTTTGATCGGC 60.806 60.000 4.69 0.00 0.00 5.54
1308 1997 1.191535 ATCTCGATTTCCCACCGTGA 58.808 50.000 0.00 0.00 0.00 4.35
1326 2015 0.460459 GAGAGCCTGTAAACCCGCTC 60.460 60.000 9.39 9.39 46.49 5.03
1363 2052 2.224549 CACCAGATGACGCCGTTTTAAA 59.775 45.455 0.00 0.00 0.00 1.52
1378 2071 7.799914 CGCCGTTTTAAACACTATTCTTTTACT 59.200 33.333 8.61 0.00 0.00 2.24
1419 2113 1.364678 TCCTATCACCCCCTGTTCTGA 59.635 52.381 0.00 0.00 0.00 3.27
1503 2197 6.644347 ACCTGTGATGGAGTACTGAAAATAG 58.356 40.000 0.00 0.00 0.00 1.73
1517 2211 9.899226 GTACTGAAAATAGATCAACTGCTTTTT 57.101 29.630 0.00 0.00 30.57 1.94
1537 2231 3.728076 TTTAGACTCGATTAGCGCCAT 57.272 42.857 2.29 0.00 40.61 4.40
1572 2266 1.000145 GCAAGTTGTAGCCGTCTAGC 59.000 55.000 4.48 0.00 0.00 3.42
1662 2357 4.882671 ATGGAAGAAATGTATCACACGC 57.117 40.909 0.00 0.00 0.00 5.34
1764 2459 3.152341 GAGGATGCTGATTTATGTGGGG 58.848 50.000 0.00 0.00 0.00 4.96
1796 2491 9.004717 TCATAAGAATCAATGGTTTACGAACAA 57.995 29.630 0.00 0.00 37.51 2.83
1804 2499 4.822036 TGGTTTACGAACAATGGAACAG 57.178 40.909 0.00 0.00 38.78 3.16
1858 2553 2.828520 GCAGAGCTATAGGCAGGTGATA 59.171 50.000 1.04 0.00 44.79 2.15
1917 2612 9.606631 ATCTAAAGGTTGTAGACATCATTTCTC 57.393 33.333 6.63 0.00 33.44 2.87
1919 2614 5.762179 AGGTTGTAGACATCATTTCTCCA 57.238 39.130 0.00 0.00 0.00 3.86
2077 2772 7.697691 ACTTATTTGTCTTCCATTATGCTTCG 58.302 34.615 0.00 0.00 0.00 3.79
2103 2806 6.662755 TGCTACCACCTAATGAATCATTTCT 58.337 36.000 14.15 0.00 35.54 2.52
2126 2829 7.824672 TCTTAGTACTTCTTACTGTTACCTGC 58.175 38.462 0.00 0.00 41.48 4.85
2127 2830 7.449395 TCTTAGTACTTCTTACTGTTACCTGCA 59.551 37.037 0.00 0.00 41.48 4.41
2128 2831 5.780984 AGTACTTCTTACTGTTACCTGCAC 58.219 41.667 0.00 0.00 39.78 4.57
2129 2832 4.957684 ACTTCTTACTGTTACCTGCACT 57.042 40.909 0.00 0.00 0.00 4.40
2130 2833 4.632153 ACTTCTTACTGTTACCTGCACTG 58.368 43.478 0.00 0.00 0.00 3.66
2131 2834 3.040147 TCTTACTGTTACCTGCACTGC 57.960 47.619 0.00 0.00 0.00 4.40
2132 2835 1.726791 CTTACTGTTACCTGCACTGCG 59.273 52.381 0.00 0.00 0.00 5.18
2133 2836 0.037697 TACTGTTACCTGCACTGCGG 60.038 55.000 2.49 2.49 34.23 5.69
2134 2837 1.301716 CTGTTACCTGCACTGCGGT 60.302 57.895 17.73 17.73 38.49 5.68
2135 2838 0.037697 CTGTTACCTGCACTGCGGTA 60.038 55.000 16.17 16.17 36.94 4.02
2136 2839 0.611200 TGTTACCTGCACTGCGGTAT 59.389 50.000 19.05 7.16 37.47 2.73
2191 2899 6.858478 CCACTCGTACTACATACTGAATCATG 59.142 42.308 0.00 0.00 0.00 3.07
2319 3032 7.201350 GCCATTGATCAAATAACAACTTCGTTC 60.201 37.037 13.09 0.00 0.00 3.95
2323 3036 3.499157 TCAAATAACAACTTCGTTCGGGG 59.501 43.478 0.00 0.00 0.00 5.73
2375 3088 4.402793 TGAAGGTCATAGAGAAGTACCTGC 59.597 45.833 0.00 0.00 39.64 4.85
2457 3170 6.157994 AGGTACACATTCCCATACAGTTACAT 59.842 38.462 0.00 0.00 0.00 2.29
2471 3184 9.809096 CATACAGTTACATATGTTCTTCAGAGT 57.191 33.333 14.77 9.06 0.00 3.24
2489 3202 2.677337 GAGTGGAAGCTCTTTGATGCTC 59.323 50.000 0.00 0.00 38.75 4.26
2494 3207 5.298777 GTGGAAGCTCTTTGATGCTCATTAT 59.701 40.000 0.00 0.00 38.75 1.28
2495 3208 5.298527 TGGAAGCTCTTTGATGCTCATTATG 59.701 40.000 0.00 0.00 38.75 1.90
2496 3209 5.298777 GGAAGCTCTTTGATGCTCATTATGT 59.701 40.000 0.00 0.00 38.75 2.29
2566 3282 4.731720 GACTTTAGTCACTAGTCCCGTTC 58.268 47.826 5.04 0.00 44.18 3.95
2570 3286 1.825474 AGTCACTAGTCCCGTTCATGG 59.175 52.381 0.00 0.00 0.00 3.66
2571 3287 1.549170 GTCACTAGTCCCGTTCATGGT 59.451 52.381 0.00 0.00 0.00 3.55
2572 3288 1.548719 TCACTAGTCCCGTTCATGGTG 59.451 52.381 0.00 0.00 0.00 4.17
2573 3289 1.275291 CACTAGTCCCGTTCATGGTGT 59.725 52.381 0.00 0.00 0.00 4.16
2574 3290 1.975680 ACTAGTCCCGTTCATGGTGTT 59.024 47.619 0.00 0.00 0.00 3.32
2575 3291 3.056393 CACTAGTCCCGTTCATGGTGTTA 60.056 47.826 0.00 0.00 0.00 2.41
2576 3292 3.773119 ACTAGTCCCGTTCATGGTGTTAT 59.227 43.478 0.00 0.00 0.00 1.89
2577 3293 3.261981 AGTCCCGTTCATGGTGTTATC 57.738 47.619 0.00 0.00 0.00 1.75
2578 3294 2.838202 AGTCCCGTTCATGGTGTTATCT 59.162 45.455 0.00 0.00 0.00 1.98
2579 3295 3.263425 AGTCCCGTTCATGGTGTTATCTT 59.737 43.478 0.00 0.00 0.00 2.40
2580 3296 4.007659 GTCCCGTTCATGGTGTTATCTTT 58.992 43.478 0.00 0.00 0.00 2.52
2581 3297 4.457949 GTCCCGTTCATGGTGTTATCTTTT 59.542 41.667 0.00 0.00 0.00 2.27
2582 3298 5.644636 GTCCCGTTCATGGTGTTATCTTTTA 59.355 40.000 0.00 0.00 0.00 1.52
2583 3299 5.878116 TCCCGTTCATGGTGTTATCTTTTAG 59.122 40.000 0.00 0.00 0.00 1.85
2584 3300 5.448632 CCCGTTCATGGTGTTATCTTTTAGC 60.449 44.000 0.00 0.00 0.00 3.09
2585 3301 5.123186 CCGTTCATGGTGTTATCTTTTAGCA 59.877 40.000 0.00 0.00 0.00 3.49
2586 3302 6.348950 CCGTTCATGGTGTTATCTTTTAGCAA 60.349 38.462 0.00 0.00 0.00 3.91
2587 3303 6.523201 CGTTCATGGTGTTATCTTTTAGCAAC 59.477 38.462 0.00 0.00 0.00 4.17
2588 3304 6.509418 TCATGGTGTTATCTTTTAGCAACC 57.491 37.500 0.00 0.00 0.00 3.77
2589 3305 6.007076 TCATGGTGTTATCTTTTAGCAACCA 58.993 36.000 0.00 0.00 0.00 3.67
2590 3306 6.663093 TCATGGTGTTATCTTTTAGCAACCAT 59.337 34.615 0.00 0.00 34.94 3.55
2591 3307 6.909550 TGGTGTTATCTTTTAGCAACCATT 57.090 33.333 0.00 0.00 0.00 3.16
2592 3308 7.296628 TGGTGTTATCTTTTAGCAACCATTT 57.703 32.000 0.00 0.00 0.00 2.32
2593 3309 8.410673 TGGTGTTATCTTTTAGCAACCATTTA 57.589 30.769 0.00 0.00 0.00 1.40
2594 3310 9.030452 TGGTGTTATCTTTTAGCAACCATTTAT 57.970 29.630 0.00 0.00 0.00 1.40
2595 3311 9.301153 GGTGTTATCTTTTAGCAACCATTTATG 57.699 33.333 0.00 0.00 0.00 1.90
2626 3368 9.107177 TCTTGCAATGATGTATTTTGTTTTGTT 57.893 25.926 0.00 0.00 0.00 2.83
2911 3653 2.328235 TCCGTATAGGACTGAGCGC 58.672 57.895 0.00 0.00 45.98 5.92
2924 3666 1.446099 GAGCGCGTGGTGATTCAGA 60.446 57.895 4.91 0.00 0.00 3.27
2963 3705 2.756207 TGCTGTTGATGTAGCATGCATT 59.244 40.909 21.98 1.90 43.13 3.56
3057 3800 1.940613 ACACGTTGCTTCTCAAACCTC 59.059 47.619 0.00 0.00 36.26 3.85
3069 3812 5.446260 TCTCAAACCTCCCTATTAAACCC 57.554 43.478 0.00 0.00 0.00 4.11
3070 3813 4.228895 TCTCAAACCTCCCTATTAAACCCC 59.771 45.833 0.00 0.00 0.00 4.95
3099 3842 8.021396 ACTATTCGAACAATTGGCTAAAAGTTC 58.979 33.333 10.83 15.92 33.72 3.01
3107 3850 2.143122 TGGCTAAAAGTTCTCACGCTG 58.857 47.619 0.00 0.00 0.00 5.18
3118 3861 4.271291 AGTTCTCACGCTGAGTTTCTTTTC 59.729 41.667 12.62 0.00 44.58 2.29
3225 3968 9.394767 TGATACATGCTCTTTTATGCTTAAAGA 57.605 29.630 5.11 6.60 38.82 2.52
3394 4138 8.574196 AAACGTGTTGAAGGAATTAAATCTTG 57.426 30.769 0.00 0.00 0.00 3.02
3433 4178 4.065789 GTTTATAGGCATAGTCCTGTGGC 58.934 47.826 9.17 9.17 45.26 5.01
3455 4200 8.827677 GTGGCTATCGAAATTCAACTTAACTAT 58.172 33.333 0.00 0.00 0.00 2.12
3566 4311 1.134226 GTGTCGACACCGGTAACTTG 58.866 55.000 33.62 0.00 40.85 3.16
3596 4341 1.004080 GCCAGACTCTGCTGAGCAA 60.004 57.895 19.49 0.00 43.85 3.91
3954 4705 2.238942 TGAGTCAAGCTCTTCGCAAA 57.761 45.000 0.00 0.00 44.41 3.68
4068 4820 6.844388 TCTTAGTTGGCATAGGATTCCTTCTA 59.156 38.462 11.25 0.00 34.61 2.10
4078 4830 7.582242 GCATAGGATTCCTTCTATGGCTCAATA 60.582 40.741 11.25 0.00 41.67 1.90
4229 4983 4.384056 ACTTCCAGAATGATATTCCGCTG 58.616 43.478 0.00 0.00 39.69 5.18
4308 5084 4.645535 TGGTTCTTCTTGATCCTCTGTTG 58.354 43.478 0.00 0.00 35.94 3.33
4309 5085 4.006319 GGTTCTTCTTGATCCTCTGTTGG 58.994 47.826 0.00 0.00 32.98 3.77
4310 5086 3.988976 TCTTCTTGATCCTCTGTTGGG 57.011 47.619 0.00 0.00 0.00 4.12
4311 5087 2.026822 TCTTCTTGATCCTCTGTTGGGC 60.027 50.000 0.00 0.00 0.00 5.36
4312 5088 1.361204 TCTTGATCCTCTGTTGGGCA 58.639 50.000 0.00 0.00 0.00 5.36
4313 5089 1.918262 TCTTGATCCTCTGTTGGGCAT 59.082 47.619 0.00 0.00 0.00 4.40
4314 5090 2.022195 CTTGATCCTCTGTTGGGCATG 58.978 52.381 0.00 0.00 0.00 4.06
4315 5091 1.288188 TGATCCTCTGTTGGGCATGA 58.712 50.000 0.00 0.00 0.00 3.07
4316 5092 1.848388 TGATCCTCTGTTGGGCATGAT 59.152 47.619 0.00 0.00 0.00 2.45
4317 5093 2.242965 TGATCCTCTGTTGGGCATGATT 59.757 45.455 0.00 0.00 0.00 2.57
4318 5094 3.459227 TGATCCTCTGTTGGGCATGATTA 59.541 43.478 0.00 0.00 0.00 1.75
4319 5095 4.079844 TGATCCTCTGTTGGGCATGATTAA 60.080 41.667 0.00 0.00 0.00 1.40
4320 5096 4.524802 TCCTCTGTTGGGCATGATTAAT 57.475 40.909 0.00 0.00 0.00 1.40
4321 5097 4.870636 TCCTCTGTTGGGCATGATTAATT 58.129 39.130 0.00 0.00 0.00 1.40
4322 5098 4.646040 TCCTCTGTTGGGCATGATTAATTG 59.354 41.667 0.00 0.00 0.00 2.32
4323 5099 4.202182 CCTCTGTTGGGCATGATTAATTGG 60.202 45.833 0.00 0.00 0.00 3.16
4324 5100 4.608269 TCTGTTGGGCATGATTAATTGGA 58.392 39.130 0.00 0.00 0.00 3.53
4325 5101 4.646040 TCTGTTGGGCATGATTAATTGGAG 59.354 41.667 0.00 0.00 0.00 3.86
4326 5102 4.608269 TGTTGGGCATGATTAATTGGAGA 58.392 39.130 0.00 0.00 0.00 3.71
4327 5103 5.210430 TGTTGGGCATGATTAATTGGAGAT 58.790 37.500 0.00 0.00 0.00 2.75
4328 5104 5.069383 TGTTGGGCATGATTAATTGGAGATG 59.931 40.000 0.00 0.00 0.00 2.90
4329 5105 4.154176 TGGGCATGATTAATTGGAGATGG 58.846 43.478 0.00 0.00 0.00 3.51
4330 5106 3.056322 GGGCATGATTAATTGGAGATGGC 60.056 47.826 0.00 0.00 36.07 4.40
4331 5107 3.056322 GGCATGATTAATTGGAGATGGCC 60.056 47.826 0.00 0.00 31.95 5.36
4332 5108 3.575256 GCATGATTAATTGGAGATGGCCA 59.425 43.478 8.56 8.56 35.78 5.36
4333 5109 4.222145 GCATGATTAATTGGAGATGGCCAT 59.778 41.667 20.96 20.96 37.86 4.40
4334 5110 5.623824 GCATGATTAATTGGAGATGGCCATC 60.624 44.000 34.48 34.48 37.86 3.51
4335 5111 5.064314 TGATTAATTGGAGATGGCCATCA 57.936 39.130 40.05 24.37 40.22 3.07
4336 5112 5.647230 TGATTAATTGGAGATGGCCATCAT 58.353 37.500 40.05 27.44 40.22 2.45
4337 5113 6.079336 TGATTAATTGGAGATGGCCATCATT 58.921 36.000 40.05 31.46 40.22 2.57
4338 5114 7.240167 TGATTAATTGGAGATGGCCATCATTA 58.760 34.615 40.05 30.56 40.22 1.90
4339 5115 7.897030 TGATTAATTGGAGATGGCCATCATTAT 59.103 33.333 40.05 25.87 40.22 1.28
4340 5116 8.674925 ATTAATTGGAGATGGCCATCATTATT 57.325 30.769 40.05 31.34 40.22 1.40
4341 5117 9.772605 ATTAATTGGAGATGGCCATCATTATTA 57.227 29.630 40.05 30.52 40.22 0.98
4342 5118 9.772605 TTAATTGGAGATGGCCATCATTATTAT 57.227 29.630 40.05 22.54 40.22 1.28
4343 5119 7.655521 ATTGGAGATGGCCATCATTATTATG 57.344 36.000 40.05 0.00 40.22 1.90
4344 5120 4.951715 TGGAGATGGCCATCATTATTATGC 59.048 41.667 40.05 25.68 40.22 3.14
4345 5121 4.951715 GGAGATGGCCATCATTATTATGCA 59.048 41.667 40.05 0.00 40.22 3.96
4346 5122 5.163581 GGAGATGGCCATCATTATTATGCAC 60.164 44.000 40.05 15.26 40.22 4.57
4347 5123 5.326900 AGATGGCCATCATTATTATGCACA 58.673 37.500 40.05 0.00 40.22 4.57
4348 5124 5.955959 AGATGGCCATCATTATTATGCACAT 59.044 36.000 40.05 16.98 40.22 3.21
4349 5125 6.439375 AGATGGCCATCATTATTATGCACATT 59.561 34.615 40.05 16.36 40.22 2.71
4350 5126 6.422344 TGGCCATCATTATTATGCACATTT 57.578 33.333 0.00 0.00 0.00 2.32
4351 5127 7.536159 TGGCCATCATTATTATGCACATTTA 57.464 32.000 0.00 0.00 0.00 1.40
4352 5128 8.136563 TGGCCATCATTATTATGCACATTTAT 57.863 30.769 0.00 0.00 0.00 1.40
4353 5129 8.252417 TGGCCATCATTATTATGCACATTTATC 58.748 33.333 0.00 0.00 0.00 1.75
4354 5130 7.707893 GGCCATCATTATTATGCACATTTATCC 59.292 37.037 0.00 0.00 0.00 2.59
4355 5131 8.472413 GCCATCATTATTATGCACATTTATCCT 58.528 33.333 0.00 0.00 0.00 3.24
4356 5132 9.797556 CCATCATTATTATGCACATTTATCCTG 57.202 33.333 0.00 0.00 0.00 3.86
4357 5133 9.297586 CATCATTATTATGCACATTTATCCTGC 57.702 33.333 0.00 0.00 0.00 4.85
4358 5134 8.406730 TCATTATTATGCACATTTATCCTGCA 57.593 30.769 0.00 0.00 44.71 4.41
4364 5140 5.252969 TGCACATTTATCCTGCATTTCTC 57.747 39.130 0.00 0.00 36.00 2.87
4365 5141 4.098349 TGCACATTTATCCTGCATTTCTCC 59.902 41.667 0.00 0.00 36.00 3.71
4366 5142 4.340381 GCACATTTATCCTGCATTTCTCCT 59.660 41.667 0.00 0.00 0.00 3.69
4367 5143 5.735354 GCACATTTATCCTGCATTTCTCCTG 60.735 44.000 0.00 0.00 0.00 3.86
4368 5144 5.591472 CACATTTATCCTGCATTTCTCCTGA 59.409 40.000 0.00 0.00 0.00 3.86
4369 5145 6.095860 CACATTTATCCTGCATTTCTCCTGAA 59.904 38.462 0.00 0.00 0.00 3.02
4370 5146 6.664816 ACATTTATCCTGCATTTCTCCTGAAA 59.335 34.615 0.00 0.00 44.99 2.69
4371 5147 7.178983 ACATTTATCCTGCATTTCTCCTGAAAA 59.821 33.333 0.00 0.00 44.22 2.29
4372 5148 7.722949 TTTATCCTGCATTTCTCCTGAAAAT 57.277 32.000 0.00 0.00 44.22 1.82
4485 5330 4.035792 CAGATCAGGTCTAAGGTACAGACG 59.964 50.000 5.92 0.00 42.79 4.18
4554 5399 6.558488 AATGCCCTTAAATTTTATGCCTCA 57.442 33.333 0.00 0.00 0.00 3.86
4608 5453 6.940298 TGGTAAAGAAAGGTGAAGAGGTAATG 59.060 38.462 0.00 0.00 0.00 1.90
4620 5465 9.614792 GGTGAAGAGGTAATGTACTAATTCATT 57.385 33.333 0.00 0.00 37.85 2.57
4646 5491 5.975693 TCCTTACCATTAGCTGTTTTTGG 57.024 39.130 0.00 0.00 0.00 3.28
4652 5497 9.271828 CTTACCATTAGCTGTTTTTGGAAATTT 57.728 29.630 0.00 0.00 0.00 1.82
4679 5524 9.528018 ACTGATACTTTTAACATGTTGGTTTTG 57.472 29.630 21.42 8.59 32.29 2.44
4711 5556 5.825593 ACTGACTTCTTTTGAGGGTCATA 57.174 39.130 0.00 0.00 39.89 2.15
4712 5557 5.552178 ACTGACTTCTTTTGAGGGTCATAC 58.448 41.667 0.00 0.00 39.89 2.39
4754 5599 9.598517 TTTTTAATTGTCTCTTTGTGCTGAATT 57.401 25.926 0.00 0.00 0.00 2.17
4755 5600 9.598517 TTTTAATTGTCTCTTTGTGCTGAATTT 57.401 25.926 0.00 0.00 0.00 1.82
4756 5601 8.578308 TTAATTGTCTCTTTGTGCTGAATTTG 57.422 30.769 0.00 0.00 0.00 2.32
4757 5602 5.833406 TTGTCTCTTTGTGCTGAATTTGA 57.167 34.783 0.00 0.00 0.00 2.69
4758 5603 5.833406 TGTCTCTTTGTGCTGAATTTGAA 57.167 34.783 0.00 0.00 0.00 2.69
4759 5604 5.824429 TGTCTCTTTGTGCTGAATTTGAAG 58.176 37.500 0.00 0.00 0.00 3.02
4760 5605 5.218139 GTCTCTTTGTGCTGAATTTGAAGG 58.782 41.667 0.00 0.00 0.00 3.46
4761 5606 4.279169 TCTCTTTGTGCTGAATTTGAAGGG 59.721 41.667 0.00 0.00 0.00 3.95
4762 5607 3.321682 TCTTTGTGCTGAATTTGAAGGGG 59.678 43.478 0.00 0.00 0.00 4.79
4763 5608 2.673775 TGTGCTGAATTTGAAGGGGA 57.326 45.000 0.00 0.00 0.00 4.81
4764 5609 2.517959 TGTGCTGAATTTGAAGGGGAG 58.482 47.619 0.00 0.00 0.00 4.30
4765 5610 1.203287 GTGCTGAATTTGAAGGGGAGC 59.797 52.381 0.00 0.00 0.00 4.70
4766 5611 0.820226 GCTGAATTTGAAGGGGAGCC 59.180 55.000 0.00 0.00 0.00 4.70
4767 5612 1.618074 GCTGAATTTGAAGGGGAGCCT 60.618 52.381 0.00 0.00 0.00 4.58
4768 5613 2.812658 CTGAATTTGAAGGGGAGCCTT 58.187 47.619 0.00 0.00 0.00 4.35
4769 5614 2.494870 CTGAATTTGAAGGGGAGCCTTG 59.505 50.000 0.00 0.00 0.00 3.61
4770 5615 1.827344 GAATTTGAAGGGGAGCCTTGG 59.173 52.381 0.00 0.00 0.00 3.61
4771 5616 0.615827 ATTTGAAGGGGAGCCTTGGC 60.616 55.000 2.97 2.97 0.00 4.52
4772 5617 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
4780 5625 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
4781 5626 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
4782 5627 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
4783 5628 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
4784 5629 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
4785 5630 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
4786 5631 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
4791 5636 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
4792 5637 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
4793 5638 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
4794 5639 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
4795 5640 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
4796 5641 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
4797 5642 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4798 5643 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4799 5644 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4800 5645 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
4801 5646 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
4802 5647 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
4803 5648 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
4804 5649 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
4805 5650 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
4815 5660 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
4816 5661 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
4817 5662 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
4818 5663 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
4819 5664 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
4820 5665 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
4821 5666 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
4822 5667 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
4823 5668 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
4824 5669 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
4825 5670 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
4826 5671 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
4827 5672 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
4828 5673 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
4829 5674 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
4840 5685 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
4841 5686 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
4842 5687 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
4843 5688 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
4844 5689 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
4845 5690 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
4846 5691 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
4847 5692 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
4848 5693 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
4849 5694 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
4850 5695 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
4851 5696 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
4852 5697 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
4853 5698 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
4854 5699 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
4855 5700 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
4856 5701 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
4857 5702 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
4858 5703 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
4859 5704 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
4860 5705 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
4861 5706 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
4862 5707 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
4863 5708 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
4864 5709 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
4865 5710 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
4866 5711 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
4867 5712 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
4868 5713 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
4869 5714 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
4870 5715 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
4871 5716 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
4872 5717 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
4873 5718 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
4874 5719 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
4875 5720 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
4876 5721 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
4877 5722 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
4878 5723 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
4879 5724 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
4880 5725 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
4885 5730 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4886 5731 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4887 5732 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4888 5733 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4889 5734 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4890 5735 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4891 5736 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4892 5737 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4893 5738 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
4894 5739 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
4895 5740 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
4896 5741 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
4897 5742 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
4898 5743 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
4899 5744 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
4900 5745 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
4901 5746 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
4902 5747 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
4903 5748 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
4904 5749 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4925 5770 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
4926 5771 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
4927 5772 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
4928 5773 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
4929 5774 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
4930 5775 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
4931 5776 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
4932 5777 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
4933 5778 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
4938 5783 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
4939 5784 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
4994 5839 4.385358 TGCGATACATGCAACTCTTAGA 57.615 40.909 0.00 0.00 39.87 2.10
5002 5847 3.492102 TGCAACTCTTAGAGGCTTGTT 57.508 42.857 14.24 0.00 33.35 2.83
5068 5913 9.301153 CATCACTGGGTAAAATAAAATAACTGC 57.699 33.333 0.00 0.00 0.00 4.40
5092 5937 5.222007 CCCTTGCAGATTAGGTTCCTCATAT 60.222 44.000 1.58 0.00 0.00 1.78
5095 5940 4.006319 GCAGATTAGGTTCCTCATATGGC 58.994 47.826 2.13 0.77 0.00 4.40
5108 5953 4.968971 TCATATGGCATGTGAGATGAGT 57.031 40.909 21.16 0.00 0.00 3.41
5284 6187 2.024414 GGAAAAGGAATATGCCGCAGT 58.976 47.619 0.00 0.00 0.00 4.40
5296 6199 0.312102 GCCGCAGTTCAGAGCTTTTT 59.688 50.000 0.00 0.00 0.00 1.94
5407 6310 7.113965 GCCGTTAAAGCTTTCCTTACTAAAAAC 59.886 37.037 16.57 9.27 32.20 2.43
5413 6316 5.408909 AGCTTTCCTTACTAAAAACGAGAGC 59.591 40.000 0.00 0.00 0.00 4.09
5595 6498 3.005261 CCAGCGATGATAAGTGAGCTAGT 59.995 47.826 0.06 0.00 33.24 2.57
5613 6516 2.718791 TAACGTTACTTGCGGCGCG 61.719 57.895 28.09 16.51 0.00 6.86
5709 6612 4.373156 AATTATGGTAGCTGCTTAGGGG 57.627 45.455 7.79 0.00 0.00 4.79
5731 6634 1.625417 GCATTGGGGTGGATTTGGGG 61.625 60.000 0.00 0.00 0.00 4.96
5732 6635 0.042431 CATTGGGGTGGATTTGGGGA 59.958 55.000 0.00 0.00 0.00 4.81
5765 6668 2.427889 GGGGAGGGATCAGGATTCAGTA 60.428 54.545 0.00 0.00 0.00 2.74
5766 6669 2.635427 GGGAGGGATCAGGATTCAGTAC 59.365 54.545 0.00 0.00 0.00 2.73
5767 6670 3.309296 GGAGGGATCAGGATTCAGTACA 58.691 50.000 0.00 0.00 0.00 2.90
5768 6671 3.323403 GGAGGGATCAGGATTCAGTACAG 59.677 52.174 0.00 0.00 0.00 2.74
5769 6672 3.964031 GAGGGATCAGGATTCAGTACAGT 59.036 47.826 0.00 0.00 0.00 3.55
5857 6760 3.594134 ACATTCTTGACTGAGCAGCTAC 58.406 45.455 0.00 0.00 0.00 3.58
5858 6761 3.007290 ACATTCTTGACTGAGCAGCTACA 59.993 43.478 0.00 0.00 0.00 2.74
5859 6762 3.309961 TTCTTGACTGAGCAGCTACAG 57.690 47.619 16.12 16.12 39.65 2.74
5909 6821 0.107214 CCTGCTCCATTTCGGCCTTA 60.107 55.000 0.00 0.00 33.14 2.69
5910 6822 1.681780 CCTGCTCCATTTCGGCCTTAA 60.682 52.381 0.00 0.00 33.14 1.85
5912 6824 1.271652 TGCTCCATTTCGGCCTTAACA 60.272 47.619 0.00 0.00 33.14 2.41
5938 6850 1.526917 AGTTGCTTTGAGCGGCAGT 60.527 52.632 1.45 0.00 46.26 4.40
5952 6864 2.076100 CGGCAGTACTGAGATGCAAAA 58.924 47.619 27.08 0.00 41.78 2.44
5953 6865 2.483877 CGGCAGTACTGAGATGCAAAAA 59.516 45.455 27.08 0.00 41.78 1.94
6008 6936 1.754226 GAAACAAGTTTGGTCTGGGCA 59.246 47.619 2.45 0.00 32.11 5.36
6083 7015 6.606796 TCATTCAGAGATCTCCAGGATATAGC 59.393 42.308 19.30 0.00 34.33 2.97
6084 7016 5.527026 TCAGAGATCTCCAGGATATAGCA 57.473 43.478 19.30 0.00 34.33 3.49
6088 7020 6.380560 CAGAGATCTCCAGGATATAGCAATCA 59.619 42.308 19.30 0.00 34.33 2.57
6232 7170 2.324860 GTTGCGGTGTTAAAATGCTCC 58.675 47.619 0.00 0.00 0.00 4.70
6235 7173 1.539827 GCGGTGTTAAAATGCTCCAGT 59.460 47.619 0.00 0.00 0.00 4.00
6238 7176 4.000988 CGGTGTTAAAATGCTCCAGTAGT 58.999 43.478 0.00 0.00 0.00 2.73
6254 7192 3.263425 CAGTAGTTGTACTTCATGGGGGT 59.737 47.826 0.00 0.00 37.40 4.95
6275 7219 6.269077 GGGGTCCTTTTTCTTCTTTTTATCCA 59.731 38.462 0.00 0.00 0.00 3.41
6308 7252 5.073437 AGATGGAAGCTACTACTCATCCT 57.927 43.478 0.00 0.00 33.54 3.24
6463 7423 3.021473 GCCCCCATGTGCACCATTG 62.021 63.158 15.69 9.36 0.00 2.82
6479 7439 2.271800 CATTGAAGTACGCTCCACTCC 58.728 52.381 0.00 0.00 0.00 3.85
6488 7448 2.893398 CTCCACTCCCGTACCAGC 59.107 66.667 0.00 0.00 0.00 4.85
6502 7462 0.320771 ACCAGCGCCTCTAACTGTTG 60.321 55.000 2.29 0.00 0.00 3.33
6529 7489 8.623030 GTTAACGTCCACTAAATATCTCTCTCT 58.377 37.037 0.00 0.00 0.00 3.10
6530 7490 6.870971 ACGTCCACTAAATATCTCTCTCTC 57.129 41.667 0.00 0.00 0.00 3.20
6531 7491 5.467399 ACGTCCACTAAATATCTCTCTCTCG 59.533 44.000 0.00 0.00 0.00 4.04
6532 7492 5.467399 CGTCCACTAAATATCTCTCTCTCGT 59.533 44.000 0.00 0.00 0.00 4.18
6533 7493 6.565060 CGTCCACTAAATATCTCTCTCTCGTG 60.565 46.154 0.00 0.00 0.00 4.35
6534 7494 5.765677 TCCACTAAATATCTCTCTCTCGTGG 59.234 44.000 0.00 0.00 39.50 4.94
6535 7495 5.533154 CCACTAAATATCTCTCTCTCGTGGT 59.467 44.000 0.00 0.00 34.89 4.16
6536 7496 6.711194 CCACTAAATATCTCTCTCTCGTGGTA 59.289 42.308 0.00 0.00 34.89 3.25
6537 7497 7.094975 CCACTAAATATCTCTCTCTCGTGGTAG 60.095 44.444 0.00 0.00 34.89 3.18
6538 7498 6.938030 ACTAAATATCTCTCTCTCGTGGTAGG 59.062 42.308 0.00 0.00 0.00 3.18
6539 7499 5.570205 AATATCTCTCTCTCGTGGTAGGA 57.430 43.478 0.00 0.00 0.00 2.94
6540 7500 2.992124 TCTCTCTCTCGTGGTAGGAG 57.008 55.000 0.00 0.00 0.00 3.69
6541 7501 1.134340 TCTCTCTCTCGTGGTAGGAGC 60.134 57.143 0.00 0.00 30.68 4.70
6542 7502 0.462225 TCTCTCTCGTGGTAGGAGCG 60.462 60.000 0.00 0.00 30.68 5.03
6543 7503 1.440938 CTCTCTCGTGGTAGGAGCGG 61.441 65.000 0.00 0.00 30.68 5.52
6544 7504 3.127352 CTCTCGTGGTAGGAGCGGC 62.127 68.421 0.00 0.00 30.68 6.53
6545 7505 3.141488 CTCGTGGTAGGAGCGGCT 61.141 66.667 0.00 0.00 0.00 5.52
6546 7506 3.127352 CTCGTGGTAGGAGCGGCTC 62.127 68.421 21.57 21.57 0.00 4.70
6554 7514 3.855853 GGAGCGGCTCCCTCTTCC 61.856 72.222 34.02 11.90 44.36 3.46
6555 7515 2.762043 GAGCGGCTCCCTCTTCCT 60.762 66.667 19.20 0.00 0.00 3.36
6556 7516 3.080121 AGCGGCTCCCTCTTCCTG 61.080 66.667 0.00 0.00 0.00 3.86
6557 7517 3.077556 GCGGCTCCCTCTTCCTGA 61.078 66.667 0.00 0.00 0.00 3.86
6558 7518 2.660064 GCGGCTCCCTCTTCCTGAA 61.660 63.158 0.00 0.00 0.00 3.02
6559 7519 1.977293 GCGGCTCCCTCTTCCTGAAT 61.977 60.000 0.00 0.00 0.00 2.57
6560 7520 0.179062 CGGCTCCCTCTTCCTGAATG 60.179 60.000 0.00 0.00 0.00 2.67
6561 7521 1.207791 GGCTCCCTCTTCCTGAATGA 58.792 55.000 0.00 0.00 0.00 2.57
6562 7522 1.561542 GGCTCCCTCTTCCTGAATGAA 59.438 52.381 0.00 0.00 0.00 2.57
6563 7523 2.174424 GGCTCCCTCTTCCTGAATGAAT 59.826 50.000 0.00 0.00 0.00 2.57
6564 7524 3.212685 GCTCCCTCTTCCTGAATGAATG 58.787 50.000 0.00 0.00 0.00 2.67
6565 7525 3.212685 CTCCCTCTTCCTGAATGAATGC 58.787 50.000 0.00 0.00 0.00 3.56
6566 7526 2.092212 TCCCTCTTCCTGAATGAATGCC 60.092 50.000 0.00 0.00 0.00 4.40
6567 7527 2.357465 CCCTCTTCCTGAATGAATGCCA 60.357 50.000 0.00 0.00 0.00 4.92
6568 7528 3.359033 CCTCTTCCTGAATGAATGCCAA 58.641 45.455 0.00 0.00 0.00 4.52
6569 7529 3.380637 CCTCTTCCTGAATGAATGCCAAG 59.619 47.826 0.00 0.00 0.00 3.61
6570 7530 2.756760 TCTTCCTGAATGAATGCCAAGC 59.243 45.455 0.00 0.00 0.00 4.01
6571 7531 2.219080 TCCTGAATGAATGCCAAGCA 57.781 45.000 0.00 0.00 44.86 3.91
6572 7532 1.820519 TCCTGAATGAATGCCAAGCAC 59.179 47.619 0.00 0.00 43.04 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 2.900337 GGTTCGCCCCATTAGCCG 60.900 66.667 0.00 0.00 0.00 5.52
98 100 2.029073 CTTGTCGCTGACGGTGGT 59.971 61.111 0.00 0.00 40.63 4.16
132 134 4.923871 CCGGTCAACTATGTATATGCTGTC 59.076 45.833 0.00 0.00 0.00 3.51
137 139 5.405571 GTGCTTCCGGTCAACTATGTATATG 59.594 44.000 0.00 0.00 0.00 1.78
169 189 3.990469 TCGCTTTCTCTGAAGTTCATGTC 59.010 43.478 5.91 0.00 0.00 3.06
170 190 3.993081 CTCGCTTTCTCTGAAGTTCATGT 59.007 43.478 5.91 0.00 0.00 3.21
171 191 3.181522 GCTCGCTTTCTCTGAAGTTCATG 60.182 47.826 5.91 2.99 0.00 3.07
172 192 2.999355 GCTCGCTTTCTCTGAAGTTCAT 59.001 45.455 5.91 0.00 0.00 2.57
173 193 2.036475 AGCTCGCTTTCTCTGAAGTTCA 59.964 45.455 5.25 5.25 0.00 3.18
174 194 2.666022 GAGCTCGCTTTCTCTGAAGTTC 59.334 50.000 0.00 0.00 0.00 3.01
175 195 2.036475 TGAGCTCGCTTTCTCTGAAGTT 59.964 45.455 9.64 0.00 0.00 2.66
176 196 1.615883 TGAGCTCGCTTTCTCTGAAGT 59.384 47.619 9.64 0.00 0.00 3.01
177 197 2.094803 TCTGAGCTCGCTTTCTCTGAAG 60.095 50.000 9.64 0.00 35.37 3.02
178 198 1.889170 TCTGAGCTCGCTTTCTCTGAA 59.111 47.619 9.64 0.00 35.37 3.02
179 199 1.539157 TCTGAGCTCGCTTTCTCTGA 58.461 50.000 9.64 0.00 35.75 3.27
180 200 2.582728 ATCTGAGCTCGCTTTCTCTG 57.417 50.000 9.64 0.00 0.00 3.35
181 201 3.181480 GGTAATCTGAGCTCGCTTTCTCT 60.181 47.826 9.64 0.00 0.00 3.10
182 202 3.120041 GGTAATCTGAGCTCGCTTTCTC 58.880 50.000 9.64 0.00 0.00 2.87
183 203 2.763448 AGGTAATCTGAGCTCGCTTTCT 59.237 45.455 9.64 0.00 0.00 2.52
184 204 3.120041 GAGGTAATCTGAGCTCGCTTTC 58.880 50.000 9.64 0.49 34.50 2.62
185 205 3.172229 GAGGTAATCTGAGCTCGCTTT 57.828 47.619 9.64 4.74 34.50 3.51
186 206 2.880963 GAGGTAATCTGAGCTCGCTT 57.119 50.000 9.64 4.92 34.50 4.68
269 289 1.238439 TCCTTTCTCGCTTTTGCCAG 58.762 50.000 0.00 0.00 43.93 4.85
274 294 1.547901 CCCCCTTCCTTTCTCGCTTTT 60.548 52.381 0.00 0.00 0.00 2.27
275 295 0.038310 CCCCCTTCCTTTCTCGCTTT 59.962 55.000 0.00 0.00 0.00 3.51
276 296 1.685820 CCCCCTTCCTTTCTCGCTT 59.314 57.895 0.00 0.00 0.00 4.68
310 330 1.274728 CAACAGGAGGAGGTCTCTGTG 59.725 57.143 0.00 0.00 42.10 3.66
373 393 2.662006 TCGCTTTGAGTGAGATCCAG 57.338 50.000 0.00 0.00 30.20 3.86
406 426 2.438434 CTGTGCCCCGAACCATCC 60.438 66.667 0.00 0.00 0.00 3.51
414 434 3.612247 CTCCAAGGACTGTGCCCCG 62.612 68.421 0.00 0.00 0.00 5.73
427 447 0.688487 ATTTCCCCGTCGTTCTCCAA 59.312 50.000 0.00 0.00 0.00 3.53
441 461 1.091537 TGGGATTCGCGTGAATTTCC 58.908 50.000 24.00 24.81 44.79 3.13
443 463 0.446222 CGTGGGATTCGCGTGAATTT 59.554 50.000 24.00 5.02 44.79 1.82
484 504 1.134907 GTTTCGAGTAAGATCCGGGCA 60.135 52.381 0.00 0.00 0.00 5.36
485 505 1.136500 AGTTTCGAGTAAGATCCGGGC 59.864 52.381 0.00 0.00 0.00 6.13
486 506 3.521947 AAGTTTCGAGTAAGATCCGGG 57.478 47.619 0.00 0.00 0.00 5.73
487 507 3.617263 CCAAAGTTTCGAGTAAGATCCGG 59.383 47.826 0.00 0.00 0.00 5.14
488 508 3.617263 CCCAAAGTTTCGAGTAAGATCCG 59.383 47.826 0.00 0.00 0.00 4.18
489 509 3.939592 CCCCAAAGTTTCGAGTAAGATCC 59.060 47.826 0.00 0.00 0.00 3.36
490 510 4.828829 TCCCCAAAGTTTCGAGTAAGATC 58.171 43.478 0.00 0.00 0.00 2.75
491 511 4.530946 TCTCCCCAAAGTTTCGAGTAAGAT 59.469 41.667 0.00 0.00 0.00 2.40
496 516 3.118000 ACTTTCTCCCCAAAGTTTCGAGT 60.118 43.478 0.00 0.00 42.81 4.18
506 526 1.460255 CCTGCCACTTTCTCCCCAA 59.540 57.895 0.00 0.00 0.00 4.12
523 630 3.839432 CTTCGTCTCCCTCGGCCC 61.839 72.222 0.00 0.00 0.00 5.80
584 722 1.004440 ACAGCCGCTTTCTCTGGAC 60.004 57.895 0.00 0.00 32.42 4.02
636 778 2.615747 CGACCTCCTTTTCTTCTTCCCC 60.616 54.545 0.00 0.00 0.00 4.81
652 798 1.580845 CGTCCACGGAAGTACGACCT 61.581 60.000 9.08 0.00 46.00 3.85
653 799 1.154150 CGTCCACGGAAGTACGACC 60.154 63.158 0.00 2.06 46.00 4.79
710 856 3.966026 GACGAACTGCCCGAGACCG 62.966 68.421 0.00 0.00 0.00 4.79
836 1508 2.493973 CCGGTCTCTGCTCTGCTC 59.506 66.667 0.00 0.00 0.00 4.26
837 1509 3.073735 CCCGGTCTCTGCTCTGCT 61.074 66.667 0.00 0.00 0.00 4.24
838 1510 4.154347 CCCCGGTCTCTGCTCTGC 62.154 72.222 0.00 0.00 0.00 4.26
839 1511 3.465403 CCCCCGGTCTCTGCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
854 1526 0.599991 CCTCCTTTTGTTTTGCGCCC 60.600 55.000 4.18 0.00 0.00 6.13
944 1622 0.702706 GGGAGGATTTGGGGAGGGAT 60.703 60.000 0.00 0.00 0.00 3.85
1072 1752 2.603776 AGTTTCGACCTCGGGGCT 60.604 61.111 0.00 0.00 40.29 5.19
1120 1806 1.989165 TGAAAACAACACACGCTTTGC 59.011 42.857 0.00 0.00 0.00 3.68
1122 1808 5.443955 CGAAAATGAAAACAACACACGCTTT 60.444 36.000 0.00 0.00 0.00 3.51
1131 1820 3.047093 CCCGTCCGAAAATGAAAACAAC 58.953 45.455 0.00 0.00 0.00 3.32
1132 1821 2.688958 ACCCGTCCGAAAATGAAAACAA 59.311 40.909 0.00 0.00 0.00 2.83
1149 1838 4.986708 CCCCCAACCCACAACCCG 62.987 72.222 0.00 0.00 0.00 5.28
1266 1955 1.208165 AACAGGAGAAATCGGGGCCT 61.208 55.000 0.84 0.00 0.00 5.19
1269 1958 5.193679 AGATTAAAACAGGAGAAATCGGGG 58.806 41.667 0.00 0.00 32.95 5.73
1308 1997 1.597461 GAGCGGGTTTACAGGCTCT 59.403 57.895 13.72 0.00 46.33 4.09
1351 2040 5.678132 AAGAATAGTGTTTAAAACGGCGT 57.322 34.783 6.77 6.77 0.00 5.68
1398 2091 2.022035 TCAGAACAGGGGGTGATAGGAT 60.022 50.000 0.00 0.00 0.00 3.24
1399 2092 1.364678 TCAGAACAGGGGGTGATAGGA 59.635 52.381 0.00 0.00 0.00 2.94
1400 2093 1.879575 TCAGAACAGGGGGTGATAGG 58.120 55.000 0.00 0.00 0.00 2.57
1401 2094 2.092914 GGTTCAGAACAGGGGGTGATAG 60.093 54.545 15.36 0.00 0.00 2.08
1419 2113 1.137872 TGCATTTTCAAACGGCAGGTT 59.862 42.857 0.00 0.00 41.76 3.50
1517 2211 3.381045 CATGGCGCTAATCGAGTCTAAA 58.619 45.455 7.64 0.00 41.67 1.85
1519 2213 1.335964 GCATGGCGCTAATCGAGTCTA 60.336 52.381 7.64 0.00 41.67 2.59
1533 2227 2.353579 GCAAGGATGAAAATTGCATGGC 59.646 45.455 0.00 0.00 46.64 4.40
1572 2266 2.544486 GCAAACAAACTCTTCAGGCCAG 60.544 50.000 5.01 0.00 0.00 4.85
1662 2357 7.539712 TCAGTAATTCTTTTGAAGCCTATCG 57.460 36.000 0.00 0.00 42.30 2.92
1743 2438 3.152341 CCCCACATAAATCAGCATCCTC 58.848 50.000 0.00 0.00 0.00 3.71
1796 2491 5.012239 AGCAACAACATATCACTGTTCCAT 58.988 37.500 0.00 0.00 37.25 3.41
1804 2499 7.028962 TCAAAGCATTAGCAACAACATATCAC 58.971 34.615 0.00 0.00 45.49 3.06
1858 2553 3.019564 GCAATGAAAGGTAGAGCCACAT 58.980 45.455 0.00 0.00 40.61 3.21
1917 2612 6.588756 GGCAGAATATTTGCATGAACATATGG 59.411 38.462 18.16 0.00 43.28 2.74
1919 2614 7.292713 TGGCAGAATATTTGCATGAACATAT 57.707 32.000 18.16 0.00 43.28 1.78
1982 2677 7.030165 TCAGTTCGAACAACAAAATTAAGCAA 58.970 30.769 28.78 0.00 0.00 3.91
2077 2772 6.699575 AATGATTCATTAGGTGGTAGCAAC 57.300 37.500 10.16 0.44 31.77 4.17
2103 2806 7.232127 AGTGCAGGTAACAGTAAGAAGTACTAA 59.768 37.037 0.00 0.00 41.37 2.24
2127 2830 0.677731 ATGCAGTGCAATACCGCAGT 60.678 50.000 23.90 0.00 45.23 4.40
2128 2831 0.248336 CATGCAGTGCAATACCGCAG 60.248 55.000 23.90 1.13 45.23 5.18
2129 2832 0.676151 TCATGCAGTGCAATACCGCA 60.676 50.000 23.90 0.00 46.01 5.69
2130 2833 0.664761 ATCATGCAGTGCAATACCGC 59.335 50.000 23.90 0.00 43.62 5.68
2131 2834 3.110358 CAAATCATGCAGTGCAATACCG 58.890 45.455 23.90 8.58 43.62 4.02
2191 2899 6.637658 GCTAACCATAAGAGACGAATCACTAC 59.362 42.308 0.00 0.00 0.00 2.73
2194 2902 4.745620 GGCTAACCATAAGAGACGAATCAC 59.254 45.833 0.00 0.00 35.26 3.06
2210 2918 5.902681 ACTTTGACTTCTTTTTGGCTAACC 58.097 37.500 0.00 0.00 0.00 2.85
2319 3032 1.949525 CACATTATTGCTCCTTCCCCG 59.050 52.381 0.00 0.00 0.00 5.73
2323 3036 3.181483 CCAAGCCACATTATTGCTCCTTC 60.181 47.826 0.00 0.00 33.36 3.46
2375 3088 3.697045 AGAGAAAGATCCGGTAGACACAG 59.303 47.826 0.00 0.00 0.00 3.66
2457 3170 4.774726 AGAGCTTCCACTCTGAAGAACATA 59.225 41.667 5.03 0.00 45.36 2.29
2471 3184 2.865119 TGAGCATCAAAGAGCTTCCA 57.135 45.000 0.00 0.00 45.97 3.53
2489 3202 8.415192 AGCAGATTACAAATTGCAACATAATG 57.585 30.769 0.00 0.00 38.97 1.90
2494 3207 4.989797 CCAAGCAGATTACAAATTGCAACA 59.010 37.500 0.00 0.00 38.97 3.33
2495 3208 4.990426 ACCAAGCAGATTACAAATTGCAAC 59.010 37.500 0.00 0.00 38.97 4.17
2496 3209 5.212532 ACCAAGCAGATTACAAATTGCAA 57.787 34.783 0.00 0.00 38.97 4.08
2561 3277 5.123186 TGCTAAAAGATAACACCATGAACGG 59.877 40.000 0.00 0.00 0.00 4.44
2566 3282 6.266168 TGGTTGCTAAAAGATAACACCATG 57.734 37.500 0.00 0.00 0.00 3.66
2570 3286 9.301153 CCATAAATGGTTGCTAAAAGATAACAC 57.699 33.333 0.49 0.00 43.05 3.32
2588 3304 8.259049 ACATCATTGCAAGAAAACCATAAATG 57.741 30.769 4.94 0.00 0.00 2.32
2590 3306 9.941325 AATACATCATTGCAAGAAAACCATAAA 57.059 25.926 4.94 0.00 0.00 1.40
2591 3307 9.941325 AAATACATCATTGCAAGAAAACCATAA 57.059 25.926 4.94 0.00 0.00 1.90
2592 3308 9.941325 AAAATACATCATTGCAAGAAAACCATA 57.059 25.926 4.94 0.00 0.00 2.74
2593 3309 8.723311 CAAAATACATCATTGCAAGAAAACCAT 58.277 29.630 4.94 0.00 0.00 3.55
2594 3310 7.714377 ACAAAATACATCATTGCAAGAAAACCA 59.286 29.630 4.94 0.00 0.00 3.67
2595 3311 8.086851 ACAAAATACATCATTGCAAGAAAACC 57.913 30.769 4.94 0.00 0.00 3.27
2626 3368 9.881649 TGCAAAGAATAATGTAATGCCAATTTA 57.118 25.926 0.00 0.00 0.00 1.40
2637 3379 4.634004 CACGTCCCTGCAAAGAATAATGTA 59.366 41.667 0.00 0.00 0.00 2.29
2767 3509 5.440610 ACAGAACATCAAAAGGAAGTCAGT 58.559 37.500 0.00 0.00 0.00 3.41
2908 3650 0.447801 ATTTCTGAATCACCACGCGC 59.552 50.000 5.73 0.00 0.00 6.86
3039 3782 1.594331 GGAGGTTTGAGAAGCAACGT 58.406 50.000 0.00 0.00 35.91 3.99
3040 3783 0.875059 GGGAGGTTTGAGAAGCAACG 59.125 55.000 0.00 0.00 35.91 4.10
3057 3800 6.358991 TCGAATAGTTTGGGGTTTAATAGGG 58.641 40.000 0.00 0.00 0.00 3.53
3069 3812 5.059404 AGCCAATTGTTCGAATAGTTTGG 57.941 39.130 23.03 23.03 36.16 3.28
3070 3813 8.514136 TTTTAGCCAATTGTTCGAATAGTTTG 57.486 30.769 0.00 6.88 0.00 2.93
3107 3850 6.748132 TGGGAATTGACATGAAAAGAAACTC 58.252 36.000 0.00 0.00 0.00 3.01
3118 3861 7.334921 AGCACAAATAATTTGGGAATTGACATG 59.665 33.333 0.00 0.00 46.96 3.21
3366 4110 9.673454 AGATTTAATTCCTTCAACACGTTTAAC 57.327 29.630 0.00 0.00 0.00 2.01
3373 4117 8.887036 AAACCAAGATTTAATTCCTTCAACAC 57.113 30.769 0.00 0.00 0.00 3.32
3394 4138 8.663025 GCCTATAAACTTGAGTACACTTAAACC 58.337 37.037 0.00 0.00 0.00 3.27
3404 4148 7.563924 ACAGGACTATGCCTATAAACTTGAGTA 59.436 37.037 0.00 0.00 36.22 2.59
3566 4311 1.134946 GAGTCTGGCTGAGAGAGAAGC 59.865 57.143 0.00 0.00 38.76 3.86
3596 4341 2.030717 CGTGTCTACAAGACTGAGTGCT 60.031 50.000 8.42 0.00 45.27 4.40
3778 4528 7.496529 TGGTTATTAAGATTGAGTAGCATGC 57.503 36.000 10.51 10.51 0.00 4.06
3837 4587 7.442364 GCTACCTGCACAATAGAATAAGATGAA 59.558 37.037 0.00 0.00 42.31 2.57
3954 4705 5.396213 GGATAGTGAAAGAGAATGGCTCAGT 60.396 44.000 0.00 0.00 46.45 3.41
4009 4760 8.154649 ACTCAAAGAAATGGCCGTATAATTAG 57.845 34.615 0.00 0.00 0.00 1.73
4046 4798 6.013379 CCATAGAAGGAATCCTATGCCAACTA 60.013 42.308 0.46 0.00 40.33 2.24
4100 4852 9.679661 TCCAGTAGTAGATGAATAATTGCAAAA 57.320 29.630 1.71 0.00 0.00 2.44
4131 4883 9.683069 ATTGACTTGCATCGATAAAATAAATCC 57.317 29.630 0.00 0.00 0.00 3.01
4141 4893 7.264947 TCAAGACTTATTGACTTGCATCGATA 58.735 34.615 0.00 0.00 44.18 2.92
4229 4983 8.871686 TTCAAAGAAAAACATTTCCTAGCTTC 57.128 30.769 0.00 0.00 0.00 3.86
4278 5033 7.400339 AGAGGATCAAGAAGAACCAGTTGTATA 59.600 37.037 0.00 0.00 41.44 1.47
4279 5034 6.214412 AGAGGATCAAGAAGAACCAGTTGTAT 59.786 38.462 0.00 0.00 41.44 2.29
4308 5084 3.056322 GCCATCTCCAATTAATCATGCCC 60.056 47.826 0.00 0.00 0.00 5.36
4309 5085 3.056322 GGCCATCTCCAATTAATCATGCC 60.056 47.826 0.00 0.00 0.00 4.40
4310 5086 3.575256 TGGCCATCTCCAATTAATCATGC 59.425 43.478 0.00 0.00 32.18 4.06
4311 5087 5.479027 TGATGGCCATCTCCAATTAATCATG 59.521 40.000 38.59 0.00 39.96 3.07
4312 5088 5.647230 TGATGGCCATCTCCAATTAATCAT 58.353 37.500 38.59 5.62 39.96 2.45
4313 5089 5.064314 TGATGGCCATCTCCAATTAATCA 57.936 39.130 38.59 18.60 39.96 2.57
4314 5090 6.600882 AATGATGGCCATCTCCAATTAATC 57.399 37.500 38.59 16.25 39.96 1.75
4315 5091 8.674925 AATAATGATGGCCATCTCCAATTAAT 57.325 30.769 38.59 25.23 39.96 1.40
4316 5092 9.772605 ATAATAATGATGGCCATCTCCAATTAA 57.227 29.630 38.59 22.11 39.96 1.40
4317 5093 9.192642 CATAATAATGATGGCCATCTCCAATTA 57.807 33.333 38.59 31.71 39.96 1.40
4318 5094 7.364408 GCATAATAATGATGGCCATCTCCAATT 60.364 37.037 38.59 30.86 38.60 2.32
4319 5095 6.097839 GCATAATAATGATGGCCATCTCCAAT 59.902 38.462 38.59 24.75 38.60 3.16
4320 5096 5.419788 GCATAATAATGATGGCCATCTCCAA 59.580 40.000 38.59 23.71 38.60 3.53
4321 5097 4.951715 GCATAATAATGATGGCCATCTCCA 59.048 41.667 38.59 24.60 38.60 3.86
4322 5098 4.951715 TGCATAATAATGATGGCCATCTCC 59.048 41.667 38.59 19.93 38.60 3.71
4323 5099 5.416639 TGTGCATAATAATGATGGCCATCTC 59.583 40.000 38.59 21.78 38.60 2.75
4324 5100 5.326900 TGTGCATAATAATGATGGCCATCT 58.673 37.500 38.59 25.80 38.60 2.90
4325 5101 5.648178 TGTGCATAATAATGATGGCCATC 57.352 39.130 34.71 34.71 34.84 3.51
4326 5102 6.614694 AATGTGCATAATAATGATGGCCAT 57.385 33.333 20.96 20.96 34.84 4.40
4327 5103 6.422344 AAATGTGCATAATAATGATGGCCA 57.578 33.333 8.56 8.56 34.84 5.36
4328 5104 7.707893 GGATAAATGTGCATAATAATGATGGCC 59.292 37.037 0.00 0.00 34.84 5.36
4329 5105 8.472413 AGGATAAATGTGCATAATAATGATGGC 58.528 33.333 0.00 0.00 34.84 4.40
4330 5106 9.797556 CAGGATAAATGTGCATAATAATGATGG 57.202 33.333 0.00 0.00 34.84 3.51
4331 5107 9.297586 GCAGGATAAATGTGCATAATAATGATG 57.702 33.333 0.00 0.00 37.16 3.07
4332 5108 9.027202 TGCAGGATAAATGTGCATAATAATGAT 57.973 29.630 0.00 0.00 42.20 2.45
4333 5109 8.406730 TGCAGGATAAATGTGCATAATAATGA 57.593 30.769 0.00 0.00 42.20 2.57
4343 5119 4.340381 AGGAGAAATGCAGGATAAATGTGC 59.660 41.667 0.00 0.00 37.73 4.57
4344 5120 5.591472 TCAGGAGAAATGCAGGATAAATGTG 59.409 40.000 0.00 0.00 0.00 3.21
4345 5121 5.759059 TCAGGAGAAATGCAGGATAAATGT 58.241 37.500 0.00 0.00 0.00 2.71
4346 5122 6.704289 TTCAGGAGAAATGCAGGATAAATG 57.296 37.500 0.00 0.00 0.00 2.32
4347 5123 7.722949 TTTTCAGGAGAAATGCAGGATAAAT 57.277 32.000 0.00 0.00 42.90 1.40
4348 5124 7.722949 ATTTTCAGGAGAAATGCAGGATAAA 57.277 32.000 0.00 0.00 42.90 1.40
4349 5125 7.147846 GGAATTTTCAGGAGAAATGCAGGATAA 60.148 37.037 0.00 0.00 42.90 1.75
4350 5126 6.322201 GGAATTTTCAGGAGAAATGCAGGATA 59.678 38.462 0.00 0.00 42.90 2.59
4351 5127 5.128335 GGAATTTTCAGGAGAAATGCAGGAT 59.872 40.000 0.00 0.00 42.90 3.24
4352 5128 4.463891 GGAATTTTCAGGAGAAATGCAGGA 59.536 41.667 0.00 0.00 42.90 3.86
4353 5129 4.382362 GGGAATTTTCAGGAGAAATGCAGG 60.382 45.833 0.00 0.00 42.90 4.85
4354 5130 4.221262 TGGGAATTTTCAGGAGAAATGCAG 59.779 41.667 0.00 0.00 42.90 4.41
4355 5131 4.158786 TGGGAATTTTCAGGAGAAATGCA 58.841 39.130 0.00 0.00 42.90 3.96
4356 5132 4.806640 TGGGAATTTTCAGGAGAAATGC 57.193 40.909 0.00 0.00 42.90 3.56
4357 5133 6.290294 ACATGGGAATTTTCAGGAGAAATG 57.710 37.500 0.00 0.00 42.90 2.32
4358 5134 6.940430 AACATGGGAATTTTCAGGAGAAAT 57.060 33.333 0.00 0.00 42.90 2.17
4359 5135 6.464180 CCAAACATGGGAATTTTCAGGAGAAA 60.464 38.462 0.00 0.00 41.78 2.52
4360 5136 5.011943 CCAAACATGGGAATTTTCAGGAGAA 59.988 40.000 0.00 0.00 0.00 2.87
4361 5137 4.527816 CCAAACATGGGAATTTTCAGGAGA 59.472 41.667 0.00 0.00 0.00 3.71
4362 5138 4.824289 CCAAACATGGGAATTTTCAGGAG 58.176 43.478 0.00 0.00 0.00 3.69
4363 5139 3.007831 GCCAAACATGGGAATTTTCAGGA 59.992 43.478 0.00 0.00 0.00 3.86
4364 5140 3.244491 TGCCAAACATGGGAATTTTCAGG 60.244 43.478 0.00 0.00 0.00 3.86
4365 5141 4.005487 TGCCAAACATGGGAATTTTCAG 57.995 40.909 0.00 0.00 0.00 3.02
4366 5142 4.637387 ATGCCAAACATGGGAATTTTCA 57.363 36.364 0.00 0.00 37.70 2.69
4367 5143 4.379708 GCAATGCCAAACATGGGAATTTTC 60.380 41.667 0.00 0.00 39.60 2.29
4368 5144 3.506844 GCAATGCCAAACATGGGAATTTT 59.493 39.130 0.00 0.00 39.60 1.82
4369 5145 3.083293 GCAATGCCAAACATGGGAATTT 58.917 40.909 0.00 0.00 39.60 1.82
4370 5146 2.040012 TGCAATGCCAAACATGGGAATT 59.960 40.909 1.53 0.00 39.60 2.17
4371 5147 1.629353 TGCAATGCCAAACATGGGAAT 59.371 42.857 1.53 0.00 39.60 3.01
4372 5148 1.054231 TGCAATGCCAAACATGGGAA 58.946 45.000 1.53 0.00 39.60 3.97
4452 5297 1.873591 GACCTGATCTGCAACGTGTTT 59.126 47.619 0.00 0.00 0.00 2.83
4485 5330 1.619704 CCTCCAAATCCTCCCCCAAAC 60.620 57.143 0.00 0.00 0.00 2.93
4620 5465 9.349713 CCAAAAACAGCTAATGGTAAGGATATA 57.650 33.333 0.00 0.00 0.00 0.86
4630 5475 8.711457 CAGTAAATTTCCAAAAACAGCTAATGG 58.289 33.333 0.00 0.00 0.00 3.16
4653 5498 9.528018 CAAAACCAACATGTTAAAAGTATCAGT 57.472 29.630 11.53 0.00 0.00 3.41
4676 5521 5.975693 AGAAGTCAGTTTTGAACACCAAA 57.024 34.783 0.00 0.00 42.56 3.28
4679 5524 6.386654 TCAAAAGAAGTCAGTTTTGAACACC 58.613 36.000 7.58 0.00 45.28 4.16
4742 5587 3.303938 TCCCCTTCAAATTCAGCACAAA 58.696 40.909 0.00 0.00 0.00 2.83
4762 5607 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
4763 5608 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
4764 5609 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
4765 5610 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
4766 5611 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
4767 5612 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
4768 5613 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
4769 5614 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
4773 5618 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4774 5619 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4775 5620 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4776 5621 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4777 5622 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4778 5623 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4779 5624 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4780 5625 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
4781 5626 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
4782 5627 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4783 5628 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
4784 5629 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4785 5630 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4786 5631 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
4787 5632 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
4788 5633 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4799 5644 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
4800 5645 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
4801 5646 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
4802 5647 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
4803 5648 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
4804 5649 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
4805 5650 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
4806 5651 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
4807 5652 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
4808 5653 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
4809 5654 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
4810 5655 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
4811 5656 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
4812 5657 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4813 5658 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4814 5659 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
4815 5660 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
4816 5661 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
4817 5662 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
4818 5663 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
4819 5664 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
4820 5665 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
4821 5666 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
4822 5667 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
4823 5668 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
4833 5678 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
4834 5679 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
4835 5680 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
4836 5681 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
4837 5682 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
4838 5683 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
4839 5684 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
4840 5685 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
4841 5686 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
4842 5687 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
4843 5688 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
4844 5689 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
4845 5690 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
4846 5691 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
4847 5692 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
4848 5693 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
4849 5694 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
4850 5695 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
4851 5696 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
4852 5697 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
4853 5698 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
4854 5699 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
4855 5700 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
4856 5701 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
4857 5702 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
4858 5703 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
4859 5704 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
4869 5714 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4870 5715 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4871 5716 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4872 5717 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4873 5718 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4874 5719 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4875 5720 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4876 5721 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
4877 5722 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
4878 5723 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
4879 5724 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
4880 5725 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
4881 5726 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
4882 5727 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
4883 5728 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
4884 5729 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
4885 5730 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
4886 5731 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
4887 5732 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
4899 5744 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4902 5747 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4903 5748 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4904 5749 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4905 5750 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4907 5752 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
4908 5753 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
4909 5754 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
4910 5755 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
4911 5756 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
4912 5757 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
4913 5758 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
4914 5759 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
4915 5760 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
4939 5784 7.276218 CAGAAATTCAGCACAAAGAGACAAAAA 59.724 33.333 0.00 0.00 0.00 1.94
4940 5785 6.753279 CAGAAATTCAGCACAAAGAGACAAAA 59.247 34.615 0.00 0.00 0.00 2.44
4941 5786 6.127647 ACAGAAATTCAGCACAAAGAGACAAA 60.128 34.615 0.00 0.00 0.00 2.83
4942 5787 5.357878 ACAGAAATTCAGCACAAAGAGACAA 59.642 36.000 0.00 0.00 0.00 3.18
4943 5788 4.883585 ACAGAAATTCAGCACAAAGAGACA 59.116 37.500 0.00 0.00 0.00 3.41
4944 5789 5.429957 ACAGAAATTCAGCACAAAGAGAC 57.570 39.130 0.00 0.00 0.00 3.36
4945 5790 6.992123 TCTAACAGAAATTCAGCACAAAGAGA 59.008 34.615 0.00 0.00 0.00 3.10
4946 5791 7.074502 GTCTAACAGAAATTCAGCACAAAGAG 58.925 38.462 0.00 0.00 0.00 2.85
4947 5792 6.542005 TGTCTAACAGAAATTCAGCACAAAGA 59.458 34.615 0.00 0.00 0.00 2.52
4948 5793 6.728200 TGTCTAACAGAAATTCAGCACAAAG 58.272 36.000 0.00 0.00 0.00 2.77
4949 5794 6.691754 TGTCTAACAGAAATTCAGCACAAA 57.308 33.333 0.00 0.00 0.00 2.83
4950 5795 6.671190 CATGTCTAACAGAAATTCAGCACAA 58.329 36.000 0.00 0.00 0.00 3.33
4951 5796 5.335113 GCATGTCTAACAGAAATTCAGCACA 60.335 40.000 0.00 0.00 0.00 4.57
4952 5797 5.091431 GCATGTCTAACAGAAATTCAGCAC 58.909 41.667 0.00 0.00 0.00 4.40
4953 5798 4.142838 CGCATGTCTAACAGAAATTCAGCA 60.143 41.667 0.00 0.00 0.00 4.41
4954 5799 4.093408 TCGCATGTCTAACAGAAATTCAGC 59.907 41.667 0.00 0.00 0.00 4.26
4955 5800 5.784750 TCGCATGTCTAACAGAAATTCAG 57.215 39.130 0.00 0.00 0.00 3.02
4956 5801 6.816140 TGTATCGCATGTCTAACAGAAATTCA 59.184 34.615 0.00 0.00 0.00 2.57
4957 5802 7.234187 TGTATCGCATGTCTAACAGAAATTC 57.766 36.000 0.00 0.00 0.00 2.17
4958 5803 7.792374 ATGTATCGCATGTCTAACAGAAATT 57.208 32.000 0.00 0.00 36.26 1.82
5002 5847 7.153315 TCAATTCACTGCATTGATAGCAAAAA 58.847 30.769 7.66 0.00 42.17 1.94
5036 5881 7.962995 TTTATTTTACCCAGTGATGGCATAA 57.037 32.000 0.00 0.00 0.00 1.90
5037 5882 7.962995 TTTTATTTTACCCAGTGATGGCATA 57.037 32.000 0.00 0.00 0.00 3.14
5068 5913 2.239654 TGAGGAACCTAATCTGCAAGGG 59.760 50.000 7.09 0.00 37.18 3.95
5092 5937 0.393402 GCCACTCATCTCACATGCCA 60.393 55.000 0.00 0.00 0.00 4.92
5095 5940 2.981898 TCAAGCCACTCATCTCACATG 58.018 47.619 0.00 0.00 0.00 3.21
5108 5953 2.680841 GCGTGTATAATGGTTCAAGCCA 59.319 45.455 0.00 0.00 43.48 4.75
5284 6187 4.473444 ACCCAAGATCAAAAAGCTCTGAA 58.527 39.130 0.00 0.00 0.00 3.02
5296 6199 3.255642 GCTTGTGCTTTAACCCAAGATCA 59.744 43.478 0.00 0.00 37.14 2.92
5344 6247 6.371809 AACTGCTGTTCGTTGAAAGAATAA 57.628 33.333 2.72 0.00 0.00 1.40
5407 6310 1.796355 TTCTTTCGCGACGCTCTCG 60.796 57.895 19.02 1.80 45.97 4.04
5413 6316 0.386858 TCTCCAGTTCTTTCGCGACG 60.387 55.000 9.15 2.65 0.00 5.12
5416 6319 1.002366 CCATCTCCAGTTCTTTCGCG 58.998 55.000 0.00 0.00 0.00 5.87
5489 6392 0.032130 GGCGAATCGTCCAGCAGATA 59.968 55.000 4.07 0.00 0.00 1.98
5585 6488 4.483311 GCAAGTAACGTTACTAGCTCACT 58.517 43.478 34.56 18.53 42.86 3.41
5595 6498 2.718791 CGCGCCGCAAGTAACGTTA 61.719 57.895 10.75 3.29 0.00 3.18
5613 6516 4.402474 CCCAAGTCCAAAATACAATCCTCC 59.598 45.833 0.00 0.00 0.00 4.30
5614 6517 5.125578 GTCCCAAGTCCAAAATACAATCCTC 59.874 44.000 0.00 0.00 0.00 3.71
5615 6518 5.016831 GTCCCAAGTCCAAAATACAATCCT 58.983 41.667 0.00 0.00 0.00 3.24
5709 6612 0.826062 CAAATCCACCCCAATGCCTC 59.174 55.000 0.00 0.00 0.00 4.70
5857 6760 0.950555 TCAAGTAGCAGCGGCAACTG 60.951 55.000 12.44 2.83 44.61 3.16
5858 6761 0.250295 TTCAAGTAGCAGCGGCAACT 60.250 50.000 12.44 0.86 44.61 3.16
5859 6762 0.166814 CTTCAAGTAGCAGCGGCAAC 59.833 55.000 12.44 0.00 44.61 4.17
5952 6864 3.652274 CTCAATGCAACACCCGAAATTT 58.348 40.909 0.00 0.00 0.00 1.82
5953 6865 2.610232 GCTCAATGCAACACCCGAAATT 60.610 45.455 0.00 0.00 42.31 1.82
5954 6866 1.067635 GCTCAATGCAACACCCGAAAT 60.068 47.619 0.00 0.00 42.31 2.17
5975 6887 2.301346 CTTGTTTCTGGGTTCTGTGCT 58.699 47.619 0.00 0.00 0.00 4.40
5983 6895 3.023832 CAGACCAAACTTGTTTCTGGGT 58.976 45.455 8.52 7.51 34.88 4.51
6008 6936 6.071784 TGACAAGCATAAAGAAGCAATGACAT 60.072 34.615 0.00 0.00 0.00 3.06
6135 7072 2.355716 CCATAACTCCGGAAGAAAGCCA 60.356 50.000 5.23 0.00 0.00 4.75
6207 7145 2.088338 TTTTAACACCGCAACGAACG 57.912 45.000 0.00 0.00 0.00 3.95
6232 7170 3.263425 ACCCCCATGAAGTACAACTACTG 59.737 47.826 0.00 0.00 33.14 2.74
6235 7173 2.841881 GGACCCCCATGAAGTACAACTA 59.158 50.000 0.00 0.00 0.00 2.24
6238 7176 2.053747 AGGACCCCCATGAAGTACAA 57.946 50.000 0.00 0.00 33.88 2.41
6254 7192 8.638873 GGACTTGGATAAAAAGAAGAAAAAGGA 58.361 33.333 0.00 0.00 0.00 3.36
6275 7219 4.379302 AGCTTCCATCTCTTTTGGACTT 57.621 40.909 0.00 0.00 42.88 3.01
6308 7252 2.496070 ACAGACGATCGATTGGAAGGAA 59.504 45.455 24.34 0.00 0.00 3.36
6353 7303 4.035909 GGTCGTTTGACTTGCTAAAGGAAA 59.964 41.667 0.00 0.00 44.83 3.13
6403 7363 9.933723 TGTTATTGTCTTCTACTAACCTTAACC 57.066 33.333 0.00 0.00 0.00 2.85
6463 7423 1.139095 CGGGAGTGGAGCGTACTTC 59.861 63.158 0.00 0.00 0.00 3.01
6479 7439 1.226888 GTTAGAGGCGCTGGTACGG 60.227 63.158 7.64 0.00 38.10 4.02
6488 7448 2.410730 CGTTAACCAACAGTTAGAGGCG 59.589 50.000 0.00 0.00 41.89 5.52
6502 7462 7.714703 AGAGAGATATTTAGTGGACGTTAACC 58.285 38.462 0.00 0.00 0.00 2.85
6529 7489 3.138798 GAGCCGCTCCTACCACGA 61.139 66.667 9.42 0.00 0.00 4.35
6530 7490 4.208686 GGAGCCGCTCCTACCACG 62.209 72.222 29.19 0.00 46.41 4.94
6538 7498 2.762043 AGGAAGAGGGAGCCGCTC 60.762 66.667 12.27 12.27 42.60 5.03
6539 7499 3.080121 CAGGAAGAGGGAGCCGCT 61.080 66.667 0.00 0.00 34.48 5.52
6540 7500 1.977293 ATTCAGGAAGAGGGAGCCGC 61.977 60.000 0.00 0.00 0.00 6.53
6541 7501 0.179062 CATTCAGGAAGAGGGAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
6542 7502 1.207791 TCATTCAGGAAGAGGGAGCC 58.792 55.000 0.00 0.00 0.00 4.70
6543 7503 3.212685 CATTCATTCAGGAAGAGGGAGC 58.787 50.000 0.00 0.00 0.00 4.70
6544 7504 3.212685 GCATTCATTCAGGAAGAGGGAG 58.787 50.000 0.00 0.00 0.00 4.30
6545 7505 2.092212 GGCATTCATTCAGGAAGAGGGA 60.092 50.000 0.00 0.00 0.00 4.20
6546 7506 2.305009 GGCATTCATTCAGGAAGAGGG 58.695 52.381 0.00 0.00 0.00 4.30
6547 7507 3.008835 TGGCATTCATTCAGGAAGAGG 57.991 47.619 0.00 0.00 0.00 3.69
6548 7508 3.181489 GCTTGGCATTCATTCAGGAAGAG 60.181 47.826 0.00 0.00 0.00 2.85
6549 7509 2.756760 GCTTGGCATTCATTCAGGAAGA 59.243 45.455 0.00 0.00 0.00 2.87
6550 7510 2.494471 TGCTTGGCATTCATTCAGGAAG 59.506 45.455 0.00 0.00 31.71 3.46
6551 7511 2.231964 GTGCTTGGCATTCATTCAGGAA 59.768 45.455 0.00 0.00 41.91 3.36
6552 7512 1.820519 GTGCTTGGCATTCATTCAGGA 59.179 47.619 0.00 0.00 41.91 3.86
6553 7513 2.288961 GTGCTTGGCATTCATTCAGG 57.711 50.000 0.00 0.00 41.91 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.