Multiple sequence alignment - TraesCS3A01G394300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G394300 chr3A 100.000 5564 0 0 1 5564 641877046 641871483 0.000000e+00 10275.0
1 TraesCS3A01G394300 chr3A 90.759 1396 114 8 1017 2410 641867359 641865977 0.000000e+00 1849.0
2 TraesCS3A01G394300 chr3A 86.659 847 69 27 3244 4076 641865121 641864305 0.000000e+00 898.0
3 TraesCS3A01G394300 chr3A 88.811 429 32 8 2762 3188 641865548 641865134 3.840000e-141 512.0
4 TraesCS3A01G394300 chr3A 85.547 256 28 6 1123 1378 743682625 743682871 5.530000e-65 259.0
5 TraesCS3A01G394300 chr3A 87.562 201 23 2 4401 4601 641863529 641863331 1.210000e-56 231.0
6 TraesCS3A01G394300 chr3A 86.667 195 22 3 1370 1562 743683094 743683286 4.370000e-51 213.0
7 TraesCS3A01G394300 chr3A 92.126 127 10 0 5085 5211 602271379 602271253 4.430000e-41 180.0
8 TraesCS3A01G394300 chr3A 80.000 215 39 3 5276 5486 7085415 7085629 7.460000e-34 156.0
9 TraesCS3A01G394300 chr3A 82.036 167 21 6 2478 2643 641865949 641865791 3.500000e-27 134.0
10 TraesCS3A01G394300 chr3D 92.813 3409 123 45 730 4118 503050376 503047070 0.000000e+00 4826.0
11 TraesCS3A01G394300 chr3D 89.183 1396 135 9 1017 2410 502971071 502969690 0.000000e+00 1727.0
12 TraesCS3A01G394300 chr3D 94.514 638 30 3 4265 4899 503047086 503046451 0.000000e+00 979.0
13 TraesCS3A01G394300 chr3D 83.425 1086 98 45 3053 4118 502969321 502968298 0.000000e+00 933.0
14 TraesCS3A01G394300 chr3D 93.772 289 17 1 5276 5564 503044554 503044267 3.080000e-117 433.0
15 TraesCS3A01G394300 chr3D 78.495 465 60 20 4394 4822 502968122 502967662 9.190000e-68 268.0
16 TraesCS3A01G394300 chr3D 81.308 214 21 12 4894 5090 503044812 503044601 7.460000e-34 156.0
17 TraesCS3A01G394300 chr3D 94.872 78 4 0 5202 5279 503044594 503044517 7.570000e-24 122.0
18 TraesCS3A01G394300 chr3D 83.721 129 11 4 2762 2890 502969437 502969319 4.560000e-21 113.0
19 TraesCS3A01G394300 chr3B 94.990 2395 77 17 730 3116 664530202 664527843 0.000000e+00 3718.0
20 TraesCS3A01G394300 chr3B 92.509 881 46 9 3244 4118 664527329 664526463 0.000000e+00 1243.0
21 TraesCS3A01G394300 chr3B 87.384 1078 115 14 1506 2571 664121566 664120498 0.000000e+00 1218.0
22 TraesCS3A01G394300 chr3B 87.927 878 69 20 3264 4118 664119829 664118966 0.000000e+00 1000.0
23 TraesCS3A01G394300 chr3B 90.258 503 47 2 1017 1518 664122793 664122292 0.000000e+00 656.0
24 TraesCS3A01G394300 chr3B 91.131 451 28 5 4265 4704 664526479 664526030 7.980000e-168 601.0
25 TraesCS3A01G394300 chr3B 78.647 473 57 23 4389 4822 664118797 664118330 1.970000e-69 274.0
26 TraesCS3A01G394300 chr3B 81.633 245 36 8 2768 3006 664120258 664120017 1.580000e-45 195.0
27 TraesCS3A01G394300 chr3B 100.000 32 0 0 4327 4358 664118839 664118808 6.020000e-05 60.2
28 TraesCS3A01G394300 chr5A 97.257 729 19 1 1 728 491576934 491576206 0.000000e+00 1234.0
29 TraesCS3A01G394300 chr5A 96.982 729 21 1 1 728 8159689 8158961 0.000000e+00 1223.0
30 TraesCS3A01G394300 chr5A 94.650 729 38 1 1 728 30030384 30029656 0.000000e+00 1129.0
31 TraesCS3A01G394300 chr5A 98.824 170 2 0 4100 4269 290391861 290391692 2.520000e-78 303.0
32 TraesCS3A01G394300 chr5A 94.118 119 7 0 5087 5205 446022573 446022455 1.230000e-41 182.0
33 TraesCS3A01G394300 chr5A 91.270 126 9 2 5082 5205 445813016 445813141 2.670000e-38 171.0
34 TraesCS3A01G394300 chr5A 95.556 45 2 0 1 45 463604893 463604849 7.730000e-09 73.1
35 TraesCS3A01G394300 chr7D 94.376 729 40 1 1 728 528098154 528097426 0.000000e+00 1118.0
36 TraesCS3A01G394300 chr7D 93.647 425 26 1 304 728 89954437 89954860 7.860000e-178 634.0
37 TraesCS3A01G394300 chr7D 97.087 309 8 1 1 308 89948307 89948615 2.300000e-143 520.0
38 TraesCS3A01G394300 chr7D 79.252 294 39 17 1033 1325 417913035 417913307 9.520000e-43 185.0
39 TraesCS3A01G394300 chr2B 87.483 727 90 1 1 726 584735883 584735157 0.000000e+00 837.0
40 TraesCS3A01G394300 chr2B 98.235 170 3 0 4097 4266 342280946 342280777 1.170000e-76 298.0
41 TraesCS3A01G394300 chr2B 92.500 120 9 0 5085 5204 12004867 12004986 7.410000e-39 172.0
42 TraesCS3A01G394300 chrUn 79.437 710 140 3 8 711 30495372 30494663 1.080000e-136 497.0
43 TraesCS3A01G394300 chr6D 88.189 381 34 2 1733 2105 457723996 457723619 1.420000e-120 444.0
44 TraesCS3A01G394300 chr6D 90.236 297 26 3 1270 1565 457724281 457723987 8.740000e-103 385.0
45 TraesCS3A01G394300 chr5B 86.863 373 36 5 1741 2105 223254978 223254611 6.710000e-109 405.0
46 TraesCS3A01G394300 chr6B 85.156 384 46 2 1730 2105 58053338 58053718 3.140000e-102 383.0
47 TraesCS3A01G394300 chr6B 88.095 294 32 3 1270 1562 58053056 58053347 4.130000e-91 346.0
48 TraesCS3A01G394300 chr6B 90.769 130 12 0 5080 5209 713062603 713062732 2.060000e-39 174.0
49 TraesCS3A01G394300 chr2A 87.119 295 33 4 1270 1562 459074896 459075187 4.160000e-86 329.0
50 TraesCS3A01G394300 chr5D 98.824 170 2 0 4097 4266 274578009 274578178 2.520000e-78 303.0
51 TraesCS3A01G394300 chr5D 93.684 190 11 1 4100 4289 333098087 333097899 3.280000e-72 283.0
52 TraesCS3A01G394300 chr5D 81.538 130 23 1 96 224 373688749 373688878 7.620000e-19 106.0
53 TraesCS3A01G394300 chr4D 98.824 170 2 0 4098 4267 93338208 93338039 2.520000e-78 303.0
54 TraesCS3A01G394300 chr4D 98.810 168 2 0 4100 4267 75782053 75782220 3.260000e-77 300.0
55 TraesCS3A01G394300 chr2D 98.246 171 3 0 4097 4267 560959482 560959652 3.260000e-77 300.0
56 TraesCS3A01G394300 chr2D 93.913 115 7 0 5086 5200 120988229 120988343 2.060000e-39 174.0
57 TraesCS3A01G394300 chr1D 98.810 168 2 0 4100 4267 178466306 178466473 3.260000e-77 300.0
58 TraesCS3A01G394300 chr1D 72.957 514 126 13 11 517 452247039 452246532 3.450000e-37 167.0
59 TraesCS3A01G394300 chr7A 94.211 190 7 4 4080 4267 62993161 62992974 2.540000e-73 287.0
60 TraesCS3A01G394300 chr7A 92.000 125 9 1 5087 5211 595072415 595072538 2.060000e-39 174.0
61 TraesCS3A01G394300 chr7B 90.299 134 12 1 5079 5211 81425115 81424982 2.060000e-39 174.0
62 TraesCS3A01G394300 chr4A 89.474 133 12 2 5075 5206 590222025 590222156 3.450000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G394300 chr3A 641871483 641877046 5563 True 10275.00 10275 100.000000 1 5564 1 chr3A.!!$R2 5563
1 TraesCS3A01G394300 chr3A 641863331 641867359 4028 True 724.80 1849 87.165400 1017 4601 5 chr3A.!!$R3 3584
2 TraesCS3A01G394300 chr3A 743682625 743683286 661 False 236.00 259 86.107000 1123 1562 2 chr3A.!!$F2 439
3 TraesCS3A01G394300 chr3D 503044267 503050376 6109 True 1303.20 4826 91.455800 730 5564 5 chr3D.!!$R2 4834
4 TraesCS3A01G394300 chr3D 502967662 502971071 3409 True 760.25 1727 83.706000 1017 4822 4 chr3D.!!$R1 3805
5 TraesCS3A01G394300 chr3B 664526030 664530202 4172 True 1854.00 3718 92.876667 730 4704 3 chr3B.!!$R2 3974
6 TraesCS3A01G394300 chr3B 664118330 664122793 4463 True 567.20 1218 87.641500 1017 4822 6 chr3B.!!$R1 3805
7 TraesCS3A01G394300 chr5A 491576206 491576934 728 True 1234.00 1234 97.257000 1 728 1 chr5A.!!$R6 727
8 TraesCS3A01G394300 chr5A 8158961 8159689 728 True 1223.00 1223 96.982000 1 728 1 chr5A.!!$R1 727
9 TraesCS3A01G394300 chr5A 30029656 30030384 728 True 1129.00 1129 94.650000 1 728 1 chr5A.!!$R2 727
10 TraesCS3A01G394300 chr7D 528097426 528098154 728 True 1118.00 1118 94.376000 1 728 1 chr7D.!!$R1 727
11 TraesCS3A01G394300 chr2B 584735157 584735883 726 True 837.00 837 87.483000 1 726 1 chr2B.!!$R2 725
12 TraesCS3A01G394300 chrUn 30494663 30495372 709 True 497.00 497 79.437000 8 711 1 chrUn.!!$R1 703
13 TraesCS3A01G394300 chr6D 457723619 457724281 662 True 414.50 444 89.212500 1270 2105 2 chr6D.!!$R1 835
14 TraesCS3A01G394300 chr6B 58053056 58053718 662 False 364.50 383 86.625500 1270 2105 2 chr6B.!!$F2 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 762 0.103937 TTTTTGTTGCCTTGCTCCCG 59.896 50.000 0.00 0.0 0.00 5.14 F
986 993 0.255890 AATCCCCAGACCAATCACCG 59.744 55.000 0.00 0.0 0.00 4.94 F
2204 3200 1.556911 ACAGAATCATCCGGCTCTGTT 59.443 47.619 13.69 0.0 44.71 3.16 F
2523 3529 1.836383 ACGATCGCCTTGATAACGAC 58.164 50.000 16.60 0.0 38.85 4.34 F
3260 5060 0.400213 TGGACTCATGGTGGTGTTCC 59.600 55.000 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 2746 0.319555 TGAAGCCGAAGACGTGGAAG 60.320 55.0 0.00 0.00 37.88 3.46 R
2505 3511 0.770590 CGTCGTTATCAAGGCGATCG 59.229 55.0 11.69 11.69 37.00 3.69 R
3241 5041 0.400213 GGAACACCACCATGAGTCCA 59.600 55.0 0.00 0.00 31.54 4.02 R
4429 6918 0.605319 TAGGGCGCAACCTGTCAAAG 60.605 55.0 14.72 0.00 42.02 2.77 R
5187 9377 0.038744 AGGTACTCCCTTCGTCCGAA 59.961 55.0 1.81 1.81 42.73 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 5.299949 TCTAATGATGCGCATGATTACTGT 58.700 37.500 30.38 15.34 37.28 3.55
285 287 2.121948 CTCAAGACCTCATCCATCCCA 58.878 52.381 0.00 0.00 0.00 4.37
459 466 1.220749 GTTCCTATCACCAGCCGCA 59.779 57.895 0.00 0.00 0.00 5.69
475 482 1.748879 GCAAGCCATTCCAGCCGTA 60.749 57.895 0.00 0.00 0.00 4.02
485 492 1.847328 TCCAGCCGTAATCTCTGACA 58.153 50.000 0.00 0.00 0.00 3.58
486 493 2.176045 TCCAGCCGTAATCTCTGACAA 58.824 47.619 0.00 0.00 0.00 3.18
527 534 5.597182 TGTGGTATAGTTCCGCTAATCTCTT 59.403 40.000 0.00 0.00 36.54 2.85
695 702 2.713976 GCAACTTGTCACGAAAATCACG 59.286 45.455 0.00 0.00 0.00 4.35
728 735 3.430862 GTTCGCCGCATTCCAGCA 61.431 61.111 0.00 0.00 0.00 4.41
735 742 1.095228 CCGCATTCCAGCAACCGTAT 61.095 55.000 0.00 0.00 0.00 3.06
755 762 0.103937 TTTTTGTTGCCTTGCTCCCG 59.896 50.000 0.00 0.00 0.00 5.14
761 768 0.757188 TTGCCTTGCTCCCGGAAAAA 60.757 50.000 0.73 0.00 0.00 1.94
784 791 1.594833 GTGTACGATCCACAGCCCA 59.405 57.895 0.00 0.00 33.00 5.36
788 795 1.067212 GTACGATCCACAGCCCAGTAG 59.933 57.143 0.00 0.00 0.00 2.57
789 796 0.614979 ACGATCCACAGCCCAGTAGT 60.615 55.000 0.00 0.00 0.00 2.73
790 797 0.537188 CGATCCACAGCCCAGTAGTT 59.463 55.000 0.00 0.00 0.00 2.24
792 799 1.279271 GATCCACAGCCCAGTAGTTGT 59.721 52.381 0.00 0.00 0.00 3.32
793 800 2.018355 TCCACAGCCCAGTAGTTGTA 57.982 50.000 0.00 0.00 0.00 2.41
794 801 1.621814 TCCACAGCCCAGTAGTTGTAC 59.378 52.381 0.00 0.00 0.00 2.90
795 802 1.338769 CCACAGCCCAGTAGTTGTACC 60.339 57.143 0.00 0.00 0.00 3.34
796 803 1.346395 CACAGCCCAGTAGTTGTACCA 59.654 52.381 0.00 0.00 0.00 3.25
797 804 1.623811 ACAGCCCAGTAGTTGTACCAG 59.376 52.381 0.00 0.00 0.00 4.00
798 805 0.613777 AGCCCAGTAGTTGTACCAGC 59.386 55.000 0.00 0.00 0.00 4.85
799 806 0.323629 GCCCAGTAGTTGTACCAGCA 59.676 55.000 0.00 0.00 0.00 4.41
811 818 1.596895 TACCAGCATACGCACACCGA 61.597 55.000 0.00 0.00 42.27 4.69
812 819 2.452813 CCAGCATACGCACACCGAC 61.453 63.158 0.00 0.00 42.27 4.79
813 820 2.125673 AGCATACGCACACCGACC 60.126 61.111 0.00 0.00 42.27 4.79
814 821 3.550992 GCATACGCACACCGACCG 61.551 66.667 0.00 0.00 41.02 4.79
924 931 4.890306 GGCTCTCCTCCCCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
925 932 4.890306 GCTCTCCTCCCCCTCCCC 62.890 77.778 0.00 0.00 0.00 4.81
926 933 3.039526 CTCTCCTCCCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
941 948 4.020617 CCTCCTGTTCTGCGCCCA 62.021 66.667 4.18 0.00 0.00 5.36
981 988 1.076777 CCGCAATCCCCAGACCAAT 60.077 57.895 0.00 0.00 0.00 3.16
982 989 1.103398 CCGCAATCCCCAGACCAATC 61.103 60.000 0.00 0.00 0.00 2.67
983 990 0.394216 CGCAATCCCCAGACCAATCA 60.394 55.000 0.00 0.00 0.00 2.57
984 991 1.106285 GCAATCCCCAGACCAATCAC 58.894 55.000 0.00 0.00 0.00 3.06
985 992 1.767759 CAATCCCCAGACCAATCACC 58.232 55.000 0.00 0.00 0.00 4.02
986 993 0.255890 AATCCCCAGACCAATCACCG 59.744 55.000 0.00 0.00 0.00 4.94
987 994 1.635817 ATCCCCAGACCAATCACCGG 61.636 60.000 0.00 0.00 0.00 5.28
988 995 2.602676 CCCCAGACCAATCACCGGT 61.603 63.158 0.00 0.00 40.30 5.28
992 999 4.296265 GACCAATCACCGGTCCAC 57.704 61.111 2.59 0.00 46.12 4.02
1488 1732 2.606519 AAGCTGCCCGGTCACCTA 60.607 61.111 0.00 0.00 0.00 3.08
1764 2746 2.914289 CTGCTCCCACTCCCCATC 59.086 66.667 0.00 0.00 0.00 3.51
2186 3182 1.855295 TACAGGGCTACGGATTGACA 58.145 50.000 0.00 0.00 0.00 3.58
2204 3200 1.556911 ACAGAATCATCCGGCTCTGTT 59.443 47.619 13.69 0.00 44.71 3.16
2499 3505 6.262049 TGCTTAGAGTGTGCACTTGAAATTTA 59.738 34.615 19.41 0.00 42.66 1.40
2505 3511 9.463443 AGAGTGTGCACTTGAAATTTAAAATAC 57.537 29.630 19.41 1.44 42.66 1.89
2509 3515 9.123709 TGTGCACTTGAAATTTAAAATACGATC 57.876 29.630 19.41 0.00 0.00 3.69
2523 3529 1.836383 ACGATCGCCTTGATAACGAC 58.164 50.000 16.60 0.00 38.85 4.34
2536 3542 4.496360 TGATAACGACGTTGATTGCCTTA 58.504 39.130 23.00 0.00 0.00 2.69
2787 4096 4.155099 TGTGTTAATTGATGTAGTTGCCGG 59.845 41.667 0.00 0.00 0.00 6.13
2908 4223 4.246053 CATGCCAGCATGCCAGTA 57.754 55.556 18.85 5.88 45.71 2.74
3092 4449 7.279758 TGTTGCTTTTGCCTTATTATTATTGGC 59.720 33.333 0.00 0.00 46.87 4.52
3170 4963 8.390354 CAATACAAGCGATCTAAACATTCTTGA 58.610 33.333 6.14 0.00 35.00 3.02
3171 4964 6.992063 ACAAGCGATCTAAACATTCTTGAT 57.008 33.333 6.14 0.00 35.00 2.57
3172 4965 7.383102 ACAAGCGATCTAAACATTCTTGATT 57.617 32.000 6.14 0.00 35.00 2.57
3173 4966 7.820648 ACAAGCGATCTAAACATTCTTGATTT 58.179 30.769 6.14 0.00 35.00 2.17
3174 4967 8.299570 ACAAGCGATCTAAACATTCTTGATTTT 58.700 29.630 6.14 0.00 35.00 1.82
3175 4968 8.581263 CAAGCGATCTAAACATTCTTGATTTTG 58.419 33.333 0.00 0.00 33.34 2.44
3176 4969 6.749118 AGCGATCTAAACATTCTTGATTTTGC 59.251 34.615 0.00 0.00 0.00 3.68
3177 4970 6.020360 GCGATCTAAACATTCTTGATTTTGCC 60.020 38.462 0.00 0.00 0.00 4.52
3178 4971 7.253422 CGATCTAAACATTCTTGATTTTGCCT 58.747 34.615 0.00 0.00 0.00 4.75
3179 4972 7.756722 CGATCTAAACATTCTTGATTTTGCCTT 59.243 33.333 0.00 0.00 0.00 4.35
3240 5040 1.092348 CCGACTCACCGTATCAGTCA 58.908 55.000 0.00 0.00 37.05 3.41
3241 5041 1.676529 CCGACTCACCGTATCAGTCAT 59.323 52.381 0.00 0.00 37.05 3.06
3242 5042 2.541794 CCGACTCACCGTATCAGTCATG 60.542 54.545 0.00 0.00 37.05 3.07
3243 5043 2.541794 CGACTCACCGTATCAGTCATGG 60.542 54.545 0.00 0.00 37.05 3.66
3244 5044 2.688446 GACTCACCGTATCAGTCATGGA 59.312 50.000 0.00 0.00 37.17 3.41
3245 5045 2.427453 ACTCACCGTATCAGTCATGGAC 59.573 50.000 0.00 0.00 0.00 4.02
3259 5059 2.086869 CATGGACTCATGGTGGTGTTC 58.913 52.381 0.00 0.00 45.19 3.18
3260 5060 0.400213 TGGACTCATGGTGGTGTTCC 59.600 55.000 0.00 0.00 0.00 3.62
3429 5233 8.562949 AGGATACCAGGTACAGTTACATAATT 57.437 34.615 0.00 0.00 37.17 1.40
3472 5277 9.408648 TCACAAGATTCTGTCTACATGATACTA 57.591 33.333 0.00 0.00 35.67 1.82
3495 5302 6.716934 AATATGTACGTCTCATCTCAGGTT 57.283 37.500 8.99 0.00 0.00 3.50
3717 5550 6.812656 CACTATGCAGATATCCAGATGAAGAC 59.187 42.308 0.00 0.00 0.00 3.01
3720 5553 3.583806 CAGATATCCAGATGAAGACGCC 58.416 50.000 0.00 0.00 0.00 5.68
3789 5622 0.883833 CTGGGCAACAAGTCATGGAC 59.116 55.000 0.00 0.00 39.74 4.02
3868 5703 5.006746 CCAAATATAGTTCGGTGCTGAGTTC 59.993 44.000 0.00 0.00 0.00 3.01
3925 5765 3.148412 TGACAAGCAAGCTGAGCAATTA 58.852 40.909 7.39 0.00 0.00 1.40
3949 5790 7.923414 ACAAATTGAGTTGGGTCTAGTAATC 57.077 36.000 0.00 0.00 32.50 1.75
3983 5825 1.486310 AGTCACACTGTCTCTTTGCCA 59.514 47.619 0.00 0.00 0.00 4.92
3990 5832 3.058639 CACTGTCTCTTTGCCAGTTAAGC 60.059 47.826 0.00 0.00 37.34 3.09
3994 5836 5.178797 TGTCTCTTTGCCAGTTAAGCTATC 58.821 41.667 0.00 0.00 0.00 2.08
4053 5896 4.299155 TGAAATAGAGTAGTATGCAGCGC 58.701 43.478 0.00 0.00 0.00 5.92
4105 5958 3.288092 GGGATCACCAAATTGTACTCCC 58.712 50.000 0.00 4.98 39.85 4.30
4106 5959 3.053619 GGGATCACCAAATTGTACTCCCT 60.054 47.826 10.85 0.00 38.44 4.20
4107 5960 4.200092 GGATCACCAAATTGTACTCCCTC 58.800 47.826 0.00 0.00 35.97 4.30
4108 5961 3.713826 TCACCAAATTGTACTCCCTCC 57.286 47.619 0.00 0.00 0.00 4.30
4109 5962 2.027561 TCACCAAATTGTACTCCCTCCG 60.028 50.000 0.00 0.00 0.00 4.63
4110 5963 1.982958 ACCAAATTGTACTCCCTCCGT 59.017 47.619 0.00 0.00 0.00 4.69
4111 5964 2.374170 ACCAAATTGTACTCCCTCCGTT 59.626 45.455 0.00 0.00 0.00 4.44
4112 5965 3.007635 CCAAATTGTACTCCCTCCGTTC 58.992 50.000 0.00 0.00 0.00 3.95
4113 5966 3.007635 CAAATTGTACTCCCTCCGTTCC 58.992 50.000 0.00 0.00 0.00 3.62
4114 5967 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
4115 5968 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
4116 5969 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4117 5970 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4118 5971 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4119 5972 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4120 5973 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4121 5974 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
4122 5975 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4123 5976 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4124 5977 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4125 5978 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4126 5979 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4127 5980 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4128 5981 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4129 5982 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
4130 5983 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
4147 6000 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
4148 6001 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
4164 6017 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
4165 6018 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
4166 6019 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
4167 6020 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
4168 6021 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
4169 6022 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
4170 6023 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
4171 6024 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
4172 6025 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
4173 6026 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
4175 6028 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
4202 6055 6.259550 AGAGTGTAGGTTCATTCATTTTGC 57.740 37.500 0.00 0.00 0.00 3.68
4203 6056 6.006449 AGAGTGTAGGTTCATTCATTTTGCT 58.994 36.000 0.00 0.00 0.00 3.91
4204 6057 6.150140 AGAGTGTAGGTTCATTCATTTTGCTC 59.850 38.462 0.00 0.00 0.00 4.26
4205 6058 5.183904 AGTGTAGGTTCATTCATTTTGCTCC 59.816 40.000 0.00 0.00 0.00 4.70
4206 6059 3.855689 AGGTTCATTCATTTTGCTCCG 57.144 42.857 0.00 0.00 0.00 4.63
4207 6060 3.157087 AGGTTCATTCATTTTGCTCCGT 58.843 40.909 0.00 0.00 0.00 4.69
4208 6061 4.331968 AGGTTCATTCATTTTGCTCCGTA 58.668 39.130 0.00 0.00 0.00 4.02
4209 6062 4.949856 AGGTTCATTCATTTTGCTCCGTAT 59.050 37.500 0.00 0.00 0.00 3.06
4210 6063 5.036737 GGTTCATTCATTTTGCTCCGTATG 58.963 41.667 0.00 0.00 0.00 2.39
4211 6064 5.393027 GGTTCATTCATTTTGCTCCGTATGT 60.393 40.000 0.00 0.00 0.00 2.29
4212 6065 6.183360 GGTTCATTCATTTTGCTCCGTATGTA 60.183 38.462 0.00 0.00 0.00 2.29
4213 6066 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4214 6067 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4215 6068 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4216 6069 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4217 6070 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4218 6071 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4219 6072 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4220 6073 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4221 6074 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4222 6075 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4223 6076 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4224 6077 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4225 6078 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4226 6079 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4227 6080 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4228 6081 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
4229 6082 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
4230 6083 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
4231 6084 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4232 6085 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
4233 6086 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4234 6087 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4235 6088 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4236 6089 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4237 6090 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4238 6091 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4239 6092 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4240 6093 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4241 6094 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4242 6095 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4255 6108 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4256 6109 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4257 6110 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4258 6111 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4259 6112 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4260 6113 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4261 6114 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4281 6134 3.198068 AGTATATCACTGCGTGCCAAAG 58.802 45.455 4.15 0.00 35.62 2.77
4288 6141 4.404654 GCGTGCCAAAGGAAGCCG 62.405 66.667 0.00 0.00 0.00 5.52
4396 6347 0.961019 TTGCCATTGTCTTGCCACTC 59.039 50.000 0.00 0.00 0.00 3.51
4416 6903 6.262496 CCACTCAGACACTATAAACTCGGATA 59.738 42.308 0.00 0.00 0.00 2.59
4427 6916 8.758715 ACTATAAACTCGGATATAAACGTTTGC 58.241 33.333 23.46 9.66 0.00 3.68
4429 6918 3.200483 ACTCGGATATAAACGTTTGCCC 58.800 45.455 23.46 15.86 0.00 5.36
4573 7065 5.105595 GCCTCCAAGCTTTGAGATGTAATTT 60.106 40.000 25.12 0.00 0.00 1.82
4704 7216 7.096230 CCTTCGCGAAACAAATATTTTTGAGTT 60.096 33.333 23.54 8.33 44.11 3.01
4845 7371 1.688735 AGCAGGGTTTTGCCTTTCTTC 59.311 47.619 0.00 0.00 45.18 2.87
4927 9098 6.865205 AGAAAATGCAGTTACTTGATTGCTTC 59.135 34.615 0.00 0.00 37.45 3.86
4932 9103 1.743394 GTTACTTGATTGCTTCGGGGG 59.257 52.381 0.00 0.00 0.00 5.40
4948 9119 2.385135 GGGGGTTTTGGTTACCTGAA 57.615 50.000 2.07 0.00 35.92 3.02
4951 9122 2.626266 GGGGTTTTGGTTACCTGAACAG 59.374 50.000 17.29 0.00 40.09 3.16
4955 9126 5.106442 GGTTTTGGTTACCTGAACAGTTTG 58.894 41.667 17.29 0.00 40.09 2.93
4956 9127 5.105675 GGTTTTGGTTACCTGAACAGTTTGA 60.106 40.000 17.29 0.00 40.09 2.69
4958 9129 6.385649 TTTGGTTACCTGAACAGTTTGATC 57.614 37.500 2.07 0.00 40.09 2.92
4985 9156 5.245531 TCTTTGCATACTTGTCCTAGTTGG 58.754 41.667 0.00 0.00 37.10 3.77
4988 9159 4.098155 TGCATACTTGTCCTAGTTGGGTA 58.902 43.478 0.00 0.00 36.20 3.69
4994 9165 4.715297 ACTTGTCCTAGTTGGGTATGGTAG 59.285 45.833 0.00 0.00 36.20 3.18
4996 9167 5.152306 TGTCCTAGTTGGGTATGGTAGAT 57.848 43.478 0.00 0.00 36.20 1.98
5007 9178 4.141620 GGGTATGGTAGATCATATGCAGGG 60.142 50.000 0.00 0.00 32.93 4.45
5012 9183 6.204852 TGGTAGATCATATGCAGGGAAAAT 57.795 37.500 0.00 0.00 0.00 1.82
5013 9184 7.328404 TGGTAGATCATATGCAGGGAAAATA 57.672 36.000 0.00 0.00 0.00 1.40
5014 9185 7.754624 TGGTAGATCATATGCAGGGAAAATAA 58.245 34.615 0.00 0.00 0.00 1.40
5015 9186 8.393259 TGGTAGATCATATGCAGGGAAAATAAT 58.607 33.333 0.00 0.00 0.00 1.28
5044 9215 8.991243 AATCATATTCTTCACATTGTTTGGTG 57.009 30.769 0.00 0.00 36.36 4.17
5045 9216 7.523293 TCATATTCTTCACATTGTTTGGTGT 57.477 32.000 0.00 0.00 36.43 4.16
5090 9280 5.334879 CCATTGTGTTGCTTACCTTGTACTC 60.335 44.000 0.00 0.00 0.00 2.59
5091 9281 3.735591 TGTGTTGCTTACCTTGTACTCC 58.264 45.455 0.00 0.00 0.00 3.85
5092 9282 3.072211 GTGTTGCTTACCTTGTACTCCC 58.928 50.000 0.00 0.00 0.00 4.30
5093 9283 2.976882 TGTTGCTTACCTTGTACTCCCT 59.023 45.455 0.00 0.00 0.00 4.20
5095 9285 2.185387 TGCTTACCTTGTACTCCCTCC 58.815 52.381 0.00 0.00 0.00 4.30
5096 9286 1.136500 GCTTACCTTGTACTCCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
5097 9287 2.454538 CTTACCTTGTACTCCCTCCGT 58.545 52.381 0.00 0.00 0.00 4.69
5098 9288 2.134789 TACCTTGTACTCCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
5099 9289 0.408700 ACCTTGTACTCCCTCCGTCT 59.591 55.000 0.00 0.00 0.00 4.18
5100 9290 0.818296 CCTTGTACTCCCTCCGTCTG 59.182 60.000 0.00 0.00 0.00 3.51
5101 9291 1.616187 CCTTGTACTCCCTCCGTCTGA 60.616 57.143 0.00 0.00 0.00 3.27
5102 9292 2.168496 CTTGTACTCCCTCCGTCTGAA 58.832 52.381 0.00 0.00 0.00 3.02
5103 9293 2.297698 TGTACTCCCTCCGTCTGAAA 57.702 50.000 0.00 0.00 0.00 2.69
5104 9294 2.600790 TGTACTCCCTCCGTCTGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
5105 9295 2.967201 TGTACTCCCTCCGTCTGAAAAA 59.033 45.455 0.00 0.00 0.00 1.94
5130 9320 3.821421 GTCCCTCAAATGGACGTATCT 57.179 47.619 0.00 0.00 42.63 1.98
5131 9321 4.931661 GTCCCTCAAATGGACGTATCTA 57.068 45.455 0.00 0.00 42.63 1.98
5132 9322 4.872664 GTCCCTCAAATGGACGTATCTAG 58.127 47.826 0.00 0.00 42.63 2.43
5133 9323 3.321111 TCCCTCAAATGGACGTATCTAGC 59.679 47.826 0.00 0.00 0.00 3.42
5134 9324 3.069586 CCCTCAAATGGACGTATCTAGCA 59.930 47.826 0.00 0.00 0.00 3.49
5135 9325 4.262635 CCCTCAAATGGACGTATCTAGCAT 60.263 45.833 0.00 0.00 0.00 3.79
5136 9326 4.926238 CCTCAAATGGACGTATCTAGCATC 59.074 45.833 0.00 0.00 0.00 3.91
5137 9327 5.509670 CCTCAAATGGACGTATCTAGCATCA 60.510 44.000 0.00 0.00 0.00 3.07
5138 9328 5.912892 TCAAATGGACGTATCTAGCATCAA 58.087 37.500 0.00 0.00 0.00 2.57
5139 9329 5.985530 TCAAATGGACGTATCTAGCATCAAG 59.014 40.000 0.00 0.00 0.00 3.02
5140 9330 5.537300 AATGGACGTATCTAGCATCAAGT 57.463 39.130 0.00 0.00 0.00 3.16
5141 9331 5.537300 ATGGACGTATCTAGCATCAAGTT 57.463 39.130 0.00 0.00 0.00 2.66
5142 9332 6.650427 ATGGACGTATCTAGCATCAAGTTA 57.350 37.500 0.00 0.00 0.00 2.24
5143 9333 6.073327 TGGACGTATCTAGCATCAAGTTAG 57.927 41.667 0.00 0.00 32.79 2.34
5144 9334 5.593095 TGGACGTATCTAGCATCAAGTTAGT 59.407 40.000 0.00 0.00 33.25 2.24
5145 9335 5.915758 GGACGTATCTAGCATCAAGTTAGTG 59.084 44.000 0.00 0.00 33.25 2.74
5146 9336 5.282510 ACGTATCTAGCATCAAGTTAGTGC 58.717 41.667 0.00 4.02 39.10 4.40
5148 9338 6.262496 ACGTATCTAGCATCAAGTTAGTGCTA 59.738 38.462 16.22 16.22 46.54 3.49
5154 9344 6.471233 AGCATCAAGTTAGTGCTAGATACA 57.529 37.500 11.30 0.00 46.54 2.29
5155 9345 6.878317 AGCATCAAGTTAGTGCTAGATACAA 58.122 36.000 11.30 0.00 46.54 2.41
5156 9346 7.504403 AGCATCAAGTTAGTGCTAGATACAAT 58.496 34.615 11.30 0.00 46.54 2.71
5157 9347 7.655328 AGCATCAAGTTAGTGCTAGATACAATC 59.345 37.037 11.30 0.00 46.54 2.67
5158 9348 7.439356 GCATCAAGTTAGTGCTAGATACAATCA 59.561 37.037 0.00 0.00 36.02 2.57
5159 9349 9.486497 CATCAAGTTAGTGCTAGATACAATCAT 57.514 33.333 0.00 0.00 0.00 2.45
5161 9351 9.890629 TCAAGTTAGTGCTAGATACAATCATTT 57.109 29.630 0.00 0.00 0.00 2.32
5162 9352 9.926751 CAAGTTAGTGCTAGATACAATCATTTG 57.073 33.333 0.00 0.00 38.86 2.32
5163 9353 9.890629 AAGTTAGTGCTAGATACAATCATTTGA 57.109 29.630 0.00 0.00 36.64 2.69
5164 9354 9.539825 AGTTAGTGCTAGATACAATCATTTGAG 57.460 33.333 0.00 0.00 36.64 3.02
5165 9355 8.768955 GTTAGTGCTAGATACAATCATTTGAGG 58.231 37.037 0.00 0.00 36.64 3.86
5166 9356 7.129457 AGTGCTAGATACAATCATTTGAGGA 57.871 36.000 0.00 0.00 36.64 3.71
5167 9357 7.568349 AGTGCTAGATACAATCATTTGAGGAA 58.432 34.615 0.00 0.00 36.64 3.36
5168 9358 7.497249 AGTGCTAGATACAATCATTTGAGGAAC 59.503 37.037 0.00 0.00 36.64 3.62
5169 9359 7.280876 GTGCTAGATACAATCATTTGAGGAACA 59.719 37.037 0.00 0.00 36.64 3.18
5170 9360 7.828717 TGCTAGATACAATCATTTGAGGAACAA 59.171 33.333 0.00 0.00 36.64 2.83
5171 9361 8.341173 GCTAGATACAATCATTTGAGGAACAAG 58.659 37.037 0.00 0.00 39.77 3.16
5172 9362 7.093322 AGATACAATCATTTGAGGAACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
5173 9363 6.888632 AGATACAATCATTTGAGGAACAAGCT 59.111 34.615 0.00 0.00 39.77 3.74
5174 9364 5.796424 ACAATCATTTGAGGAACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
5175 9365 6.899393 ACAATCATTTGAGGAACAAGCTTA 57.101 33.333 0.00 0.00 39.77 3.09
5176 9366 6.917533 ACAATCATTTGAGGAACAAGCTTAG 58.082 36.000 0.00 0.00 39.77 2.18
5177 9367 6.071728 ACAATCATTTGAGGAACAAGCTTAGG 60.072 38.462 0.00 0.00 39.77 2.69
5178 9368 5.241403 TCATTTGAGGAACAAGCTTAGGA 57.759 39.130 0.00 0.00 39.77 2.94
5179 9369 5.003804 TCATTTGAGGAACAAGCTTAGGAC 58.996 41.667 0.00 0.00 39.77 3.85
5180 9370 4.431416 TTTGAGGAACAAGCTTAGGACA 57.569 40.909 0.00 0.00 39.77 4.02
5181 9371 4.431416 TTGAGGAACAAGCTTAGGACAA 57.569 40.909 0.00 0.00 34.20 3.18
5182 9372 4.008074 TGAGGAACAAGCTTAGGACAAG 57.992 45.455 0.00 0.00 0.00 3.16
5183 9373 3.391296 TGAGGAACAAGCTTAGGACAAGT 59.609 43.478 0.00 0.00 0.00 3.16
5184 9374 4.141482 TGAGGAACAAGCTTAGGACAAGTT 60.141 41.667 0.00 0.00 0.00 2.66
5185 9375 4.793201 AGGAACAAGCTTAGGACAAGTTT 58.207 39.130 0.00 0.00 0.00 2.66
5186 9376 5.201243 AGGAACAAGCTTAGGACAAGTTTT 58.799 37.500 0.00 0.00 0.00 2.43
5187 9377 5.656859 AGGAACAAGCTTAGGACAAGTTTTT 59.343 36.000 0.00 0.00 0.00 1.94
5240 9430 7.010771 AGCCTATCATCTACACCTTACATACA 58.989 38.462 0.00 0.00 0.00 2.29
5241 9431 7.509318 AGCCTATCATCTACACCTTACATACAA 59.491 37.037 0.00 0.00 0.00 2.41
5242 9432 8.314751 GCCTATCATCTACACCTTACATACAAT 58.685 37.037 0.00 0.00 0.00 2.71
5243 9433 9.862371 CCTATCATCTACACCTTACATACAATC 57.138 37.037 0.00 0.00 0.00 2.67
5246 9436 8.073467 TCATCTACACCTTACATACAATCACA 57.927 34.615 0.00 0.00 0.00 3.58
5247 9437 7.979537 TCATCTACACCTTACATACAATCACAC 59.020 37.037 0.00 0.00 0.00 3.82
5248 9438 7.476540 TCTACACCTTACATACAATCACACT 57.523 36.000 0.00 0.00 0.00 3.55
5249 9439 7.903145 TCTACACCTTACATACAATCACACTT 58.097 34.615 0.00 0.00 0.00 3.16
5250 9440 9.027202 TCTACACCTTACATACAATCACACTTA 57.973 33.333 0.00 0.00 0.00 2.24
5251 9441 9.817809 CTACACCTTACATACAATCACACTTAT 57.182 33.333 0.00 0.00 0.00 1.73
5253 9443 8.946085 ACACCTTACATACAATCACACTTATTG 58.054 33.333 0.00 0.00 39.68 1.90
5254 9444 7.910162 CACCTTACATACAATCACACTTATTGC 59.090 37.037 0.00 0.00 37.77 3.56
5255 9445 7.609918 ACCTTACATACAATCACACTTATTGCA 59.390 33.333 0.00 0.00 37.77 4.08
5256 9446 8.458052 CCTTACATACAATCACACTTATTGCAA 58.542 33.333 0.00 0.00 37.77 4.08
5257 9447 9.277565 CTTACATACAATCACACTTATTGCAAC 57.722 33.333 0.00 0.00 37.77 4.17
5258 9448 7.213216 ACATACAATCACACTTATTGCAACA 57.787 32.000 0.00 0.00 37.77 3.33
5259 9449 7.656412 ACATACAATCACACTTATTGCAACAA 58.344 30.769 0.00 0.00 37.77 2.83
5260 9450 8.306038 ACATACAATCACACTTATTGCAACAAT 58.694 29.630 0.00 0.00 37.77 2.71
5261 9451 9.786105 CATACAATCACACTTATTGCAACAATA 57.214 29.630 0.00 0.00 37.77 1.90
5264 9454 9.539825 ACAATCACACTTATTGCAACAATAAAA 57.460 25.926 0.00 0.00 37.77 1.52
5265 9455 9.796062 CAATCACACTTATTGCAACAATAAAAC 57.204 29.630 0.00 0.00 0.00 2.43
5266 9456 9.539825 AATCACACTTATTGCAACAATAAAACA 57.460 25.926 0.00 0.00 0.00 2.83
5267 9457 8.932945 TCACACTTATTGCAACAATAAAACAA 57.067 26.923 0.00 0.00 0.00 2.83
5268 9458 8.812329 TCACACTTATTGCAACAATAAAACAAC 58.188 29.630 0.00 0.00 0.00 3.32
5269 9459 8.598924 CACACTTATTGCAACAATAAAACAACA 58.401 29.630 0.00 0.00 0.00 3.33
5270 9460 9.323985 ACACTTATTGCAACAATAAAACAACAT 57.676 25.926 0.00 0.00 0.00 2.71
5271 9461 9.583530 CACTTATTGCAACAATAAAACAACATG 57.416 29.630 0.00 0.00 0.00 3.21
5272 9462 8.772705 ACTTATTGCAACAATAAAACAACATGG 58.227 29.630 0.00 2.86 0.00 3.66
5273 9463 5.415415 TTGCAACAATAAAACAACATGGC 57.585 34.783 0.00 0.00 0.00 4.40
5274 9464 4.445453 TGCAACAATAAAACAACATGGCA 58.555 34.783 0.00 0.00 0.00 4.92
5305 9495 8.222433 CACTTATTGCACCAATAAAACAACATG 58.778 33.333 10.52 0.00 43.01 3.21
5313 9503 7.569226 GCACCAATAAAACAACATGACAATCAC 60.569 37.037 0.00 0.00 0.00 3.06
5332 9522 5.337578 TCACAACGAACTGGATGATGATA 57.662 39.130 0.00 0.00 0.00 2.15
5338 9528 7.336679 ACAACGAACTGGATGATGATAATGAAA 59.663 33.333 0.00 0.00 0.00 2.69
5362 9552 9.736023 AAATTCTTCATTCCATATAGCGAAAAC 57.264 29.630 0.00 0.00 0.00 2.43
5368 9558 4.642445 TCCATATAGCGAAAACTGACGA 57.358 40.909 0.00 0.00 0.00 4.20
5397 9587 2.030007 TGCCTACTTCAACATTGCTTGC 60.030 45.455 0.00 0.00 0.00 4.01
5429 9619 4.217550 GCATAAACTTGGAGTAAGCAACCA 59.782 41.667 0.00 0.00 40.16 3.67
5434 9624 3.214328 CTTGGAGTAAGCAACCACTGTT 58.786 45.455 0.00 0.00 33.20 3.16
5468 9658 6.884280 AAATCTTTTGTAGGAGTTGTCTGG 57.116 37.500 0.00 0.00 0.00 3.86
5470 9660 3.714798 TCTTTTGTAGGAGTTGTCTGGGT 59.285 43.478 0.00 0.00 0.00 4.51
5483 9673 2.035449 TGTCTGGGTAACGACTCACTTG 59.965 50.000 0.00 0.00 30.85 3.16
5486 9676 3.133362 TCTGGGTAACGACTCACTTGTTT 59.867 43.478 0.00 0.00 30.85 2.83
5491 9681 4.333372 GGTAACGACTCACTTGTTTTTGGA 59.667 41.667 0.00 0.00 0.00 3.53
5494 9684 6.687081 AACGACTCACTTGTTTTTGGAATA 57.313 33.333 0.00 0.00 0.00 1.75
5499 9689 7.797123 CGACTCACTTGTTTTTGGAATACTTAC 59.203 37.037 0.00 0.00 0.00 2.34
5517 9707 4.352893 ACTTACCATGAACTGTAAACCCCT 59.647 41.667 0.00 0.00 0.00 4.79
5529 9719 3.660669 TGTAAACCCCTGAAATCCTTCCT 59.339 43.478 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 6.042093 GGATATTTGTGGTGATGAGGTCTCTA 59.958 42.308 0.00 0.00 0.00 2.43
285 287 1.204146 ATACGTCAGAAGGGGTGCAT 58.796 50.000 0.00 0.00 0.00 3.96
459 466 1.212935 AGATTACGGCTGGAATGGCTT 59.787 47.619 8.02 0.00 0.00 4.35
475 482 7.389053 GGAAGAGTTAATGTGTTGTCAGAGATT 59.611 37.037 0.00 0.00 0.00 2.40
485 492 4.141251 ACCACAGGGAAGAGTTAATGTGTT 60.141 41.667 0.00 0.00 37.04 3.32
486 493 3.394606 ACCACAGGGAAGAGTTAATGTGT 59.605 43.478 0.00 0.00 37.04 3.72
695 702 2.942648 GAACGCTGGCTATGGGGTCC 62.943 65.000 0.00 0.00 0.00 4.46
755 762 2.158254 GGATCGTACACGTGGTTTTTCC 59.842 50.000 21.57 15.67 40.80 3.13
761 768 0.242825 CTGTGGATCGTACACGTGGT 59.757 55.000 21.57 8.16 41.64 4.16
784 791 2.494471 TGCGTATGCTGGTACAACTACT 59.506 45.455 8.69 0.00 43.34 2.57
788 795 1.127951 GTGTGCGTATGCTGGTACAAC 59.872 52.381 8.69 0.00 43.34 3.32
789 796 1.434555 GTGTGCGTATGCTGGTACAA 58.565 50.000 8.69 0.00 43.34 2.41
790 797 0.390603 GGTGTGCGTATGCTGGTACA 60.391 55.000 8.69 0.90 43.34 2.90
792 799 1.153726 CGGTGTGCGTATGCTGGTA 60.154 57.895 8.69 0.00 43.34 3.25
793 800 2.434185 CGGTGTGCGTATGCTGGT 60.434 61.111 8.69 0.00 43.34 4.00
794 801 2.125713 TCGGTGTGCGTATGCTGG 60.126 61.111 8.69 0.00 43.34 4.85
795 802 2.452813 GGTCGGTGTGCGTATGCTG 61.453 63.158 8.69 0.00 43.34 4.41
796 803 2.125673 GGTCGGTGTGCGTATGCT 60.126 61.111 8.69 0.00 43.34 3.79
797 804 3.550992 CGGTCGGTGTGCGTATGC 61.551 66.667 0.00 0.00 43.20 3.14
798 805 2.883730 CCGGTCGGTGTGCGTATG 60.884 66.667 0.55 0.00 0.00 2.39
799 806 4.807039 GCCGGTCGGTGTGCGTAT 62.807 66.667 11.25 0.00 37.65 3.06
856 863 3.445450 CCTATATCCATCGACTCCAGTGG 59.555 52.174 1.40 1.40 0.00 4.00
871 878 5.221028 CGAGTCCTCATCATCAGCCTATATC 60.221 48.000 0.00 0.00 0.00 1.63
924 931 3.551496 TTGGGCGCAGAACAGGAGG 62.551 63.158 10.83 0.00 0.00 4.30
925 932 1.600636 TTTGGGCGCAGAACAGGAG 60.601 57.895 10.83 0.00 0.00 3.69
926 933 1.896660 GTTTGGGCGCAGAACAGGA 60.897 57.895 10.83 0.00 0.00 3.86
986 993 4.489771 CCATCTGGGCGGTGGACC 62.490 72.222 0.00 0.00 44.16 4.46
1404 1648 1.982938 GACCTGGTGGGCGTACTCT 60.983 63.158 2.82 0.00 39.10 3.24
1488 1732 4.052229 CCGAGGACGACGCACCTT 62.052 66.667 13.93 0.93 42.66 3.50
1563 2545 4.717629 TCCGACTGCTTCACCGCG 62.718 66.667 0.00 0.00 0.00 6.46
1762 2744 0.608640 AAGCCGAAGACGTGGAAGAT 59.391 50.000 0.00 0.00 37.88 2.40
1764 2746 0.319555 TGAAGCCGAAGACGTGGAAG 60.320 55.000 0.00 0.00 37.88 3.46
2186 3182 1.745141 GCAACAGAGCCGGATGATTCT 60.745 52.381 5.05 0.00 0.00 2.40
2222 3218 1.313812 CGTACGCCTTGGACTCCTCT 61.314 60.000 0.52 0.00 0.00 3.69
2499 3505 5.045215 TCGTTATCAAGGCGATCGTATTTT 58.955 37.500 17.81 3.52 35.39 1.82
2505 3511 0.770590 CGTCGTTATCAAGGCGATCG 59.229 55.000 11.69 11.69 37.00 3.69
2509 3515 1.342555 TCAACGTCGTTATCAAGGCG 58.657 50.000 10.86 0.00 0.00 5.52
2519 3525 2.736144 TCTAAGGCAATCAACGTCGT 57.264 45.000 0.00 0.00 0.00 4.34
2523 3529 4.271049 ACGAATCATCTAAGGCAATCAACG 59.729 41.667 0.00 0.00 0.00 4.10
2536 3542 3.118738 AGGTTTTAGGCGACGAATCATCT 60.119 43.478 0.00 0.00 0.00 2.90
2707 4015 0.886043 TGCTGCTCACTCGCACATTT 60.886 50.000 0.00 0.00 35.74 2.32
2787 4096 5.393027 CCACCAGTACTTGTTGGATAAATGC 60.393 44.000 5.91 0.00 41.68 3.56
3092 4449 5.373812 AACTACCTTGATATTGTGAGGGG 57.626 43.478 0.00 0.00 33.51 4.79
3137 4922 6.844696 TTAGATCGCTTGTATTGTGATTCC 57.155 37.500 0.00 0.00 35.16 3.01
3174 4967 9.762933 GGCAAAATCAAGAATAATAATAAGGCA 57.237 29.630 0.00 0.00 0.00 4.75
3175 4968 9.987272 AGGCAAAATCAAGAATAATAATAAGGC 57.013 29.630 0.00 0.00 0.00 4.35
3189 4982 9.492973 CCCCAATAATAATAAGGCAAAATCAAG 57.507 33.333 0.00 0.00 0.00 3.02
3190 4983 7.936301 GCCCCAATAATAATAAGGCAAAATCAA 59.064 33.333 0.00 0.00 38.79 2.57
3191 4984 7.449247 GCCCCAATAATAATAAGGCAAAATCA 58.551 34.615 0.00 0.00 38.79 2.57
3192 4985 6.878923 GGCCCCAATAATAATAAGGCAAAATC 59.121 38.462 0.00 0.00 40.75 2.17
3193 4986 6.562223 AGGCCCCAATAATAATAAGGCAAAAT 59.438 34.615 0.00 0.00 40.75 1.82
3240 5040 1.004745 GGAACACCACCATGAGTCCAT 59.995 52.381 0.00 0.00 31.54 3.41
3241 5041 0.400213 GGAACACCACCATGAGTCCA 59.600 55.000 0.00 0.00 31.54 4.02
3242 5042 0.693049 AGGAACACCACCATGAGTCC 59.307 55.000 0.00 0.00 0.00 3.85
3243 5043 2.568623 AAGGAACACCACCATGAGTC 57.431 50.000 0.00 0.00 0.00 3.36
3244 5044 3.222603 GAAAAGGAACACCACCATGAGT 58.777 45.455 0.00 0.00 0.00 3.41
3245 5045 3.221771 TGAAAAGGAACACCACCATGAG 58.778 45.455 0.00 0.00 0.00 2.90
3259 5059 4.320202 CGTCACCAACATAACCTGAAAAGG 60.320 45.833 0.00 0.00 0.00 3.11
3260 5060 4.513692 TCGTCACCAACATAACCTGAAAAG 59.486 41.667 0.00 0.00 0.00 2.27
3429 5233 3.295093 TGTGAGGCAAAATTCTCCAACA 58.705 40.909 0.00 0.00 0.00 3.33
3472 5277 6.239064 GGAACCTGAGATGAGACGTACATATT 60.239 42.308 7.53 1.07 0.00 1.28
3477 5282 3.018149 AGGAACCTGAGATGAGACGTAC 58.982 50.000 0.00 0.00 0.00 3.67
3481 5288 2.430332 CTGGAGGAACCTGAGATGAGAC 59.570 54.545 0.00 0.00 39.52 3.36
3640 5473 3.277142 TGCTGAACAGAGCATCATCAT 57.723 42.857 5.97 0.00 44.16 2.45
3641 5474 2.773993 TGCTGAACAGAGCATCATCA 57.226 45.000 5.97 0.00 44.16 3.07
3679 5512 1.630369 GCATAGTGCATATGAGGGGGA 59.370 52.381 6.97 0.00 43.54 4.81
3789 5622 6.367969 AGAAACTTACATGTTTAGCCACGTAG 59.632 38.462 2.30 0.00 39.86 3.51
3868 5703 6.492007 AAGCTGATTATGACAGACACTTTG 57.508 37.500 0.00 0.00 37.54 2.77
3925 5765 7.690256 AGATTACTAGACCCAACTCAATTTGT 58.310 34.615 0.00 0.00 0.00 2.83
3949 5790 9.477484 AGACAGTGTGACTAACAATACTAAAAG 57.523 33.333 0.00 0.00 41.57 2.27
4053 5896 5.048364 AGTCCTCTATAGCTTTGCGACTATG 60.048 44.000 0.00 0.00 31.64 2.23
4097 5950 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
4098 5951 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
4099 5952 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4100 5953 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4101 5954 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4102 5955 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4103 5956 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4104 5957 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
4121 5974 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
4122 5975 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
4126 5979 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
4127 5980 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
4128 5981 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
4129 5982 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
4130 5983 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
4131 5984 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
4132 5985 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
4133 5986 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
4134 5987 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
4135 5988 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
4136 5989 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
4137 5990 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
4138 5991 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
4139 5992 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
4140 5993 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
4141 5994 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
4142 5995 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
4143 5996 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
4144 5997 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
4145 5998 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
4146 5999 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
4147 6000 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
4149 6002 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4176 6029 8.296713 GCAAAATGAATGAACCTACACTCTAAA 58.703 33.333 0.00 0.00 0.00 1.85
4177 6030 7.665559 AGCAAAATGAATGAACCTACACTCTAA 59.334 33.333 0.00 0.00 0.00 2.10
4178 6031 7.168219 AGCAAAATGAATGAACCTACACTCTA 58.832 34.615 0.00 0.00 0.00 2.43
4179 6032 6.006449 AGCAAAATGAATGAACCTACACTCT 58.994 36.000 0.00 0.00 0.00 3.24
4180 6033 6.259550 AGCAAAATGAATGAACCTACACTC 57.740 37.500 0.00 0.00 0.00 3.51
4181 6034 5.183904 GGAGCAAAATGAATGAACCTACACT 59.816 40.000 0.00 0.00 0.00 3.55
4182 6035 5.402398 GGAGCAAAATGAATGAACCTACAC 58.598 41.667 0.00 0.00 0.00 2.90
4183 6036 4.155826 CGGAGCAAAATGAATGAACCTACA 59.844 41.667 0.00 0.00 0.00 2.74
4184 6037 4.156008 ACGGAGCAAAATGAATGAACCTAC 59.844 41.667 0.00 0.00 0.00 3.18
4185 6038 4.331968 ACGGAGCAAAATGAATGAACCTA 58.668 39.130 0.00 0.00 0.00 3.08
4186 6039 3.157087 ACGGAGCAAAATGAATGAACCT 58.843 40.909 0.00 0.00 0.00 3.50
4187 6040 3.575965 ACGGAGCAAAATGAATGAACC 57.424 42.857 0.00 0.00 0.00 3.62
4188 6041 5.640732 ACATACGGAGCAAAATGAATGAAC 58.359 37.500 0.00 0.00 0.00 3.18
4189 6042 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
4190 6043 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
4191 6044 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
4192 6045 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
4193 6046 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
4194 6047 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4195 6048 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4196 6049 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4197 6050 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4198 6051 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4199 6052 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4200 6053 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4201 6054 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4202 6055 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4203 6056 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4204 6057 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
4205 6058 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4206 6059 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4208 6061 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4209 6062 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4210 6063 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4211 6064 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4212 6065 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4213 6066 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4214 6067 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4215 6068 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4216 6069 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4229 6082 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4230 6083 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4231 6084 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4232 6085 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4233 6086 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4234 6087 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4235 6088 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4236 6089 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4237 6090 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4238 6091 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4239 6092 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4240 6093 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4241 6094 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
4242 6095 8.120538 TGATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
4243 6096 7.395489 GTGATATACTCCCTCCGTTCCTAAATA 59.605 40.741 0.00 0.00 0.00 1.40
4244 6097 6.210984 GTGATATACTCCCTCCGTTCCTAAAT 59.789 42.308 0.00 0.00 0.00 1.40
4245 6098 5.537674 GTGATATACTCCCTCCGTTCCTAAA 59.462 44.000 0.00 0.00 0.00 1.85
4246 6099 5.075493 GTGATATACTCCCTCCGTTCCTAA 58.925 45.833 0.00 0.00 0.00 2.69
4247 6100 4.353191 AGTGATATACTCCCTCCGTTCCTA 59.647 45.833 0.00 0.00 33.17 2.94
4248 6101 3.140519 AGTGATATACTCCCTCCGTTCCT 59.859 47.826 0.00 0.00 33.17 3.36
4249 6102 3.256136 CAGTGATATACTCCCTCCGTTCC 59.744 52.174 0.00 0.00 37.60 3.62
4250 6103 3.305471 GCAGTGATATACTCCCTCCGTTC 60.305 52.174 0.00 0.00 37.60 3.95
4251 6104 2.628657 GCAGTGATATACTCCCTCCGTT 59.371 50.000 0.00 0.00 37.60 4.44
4252 6105 2.240279 GCAGTGATATACTCCCTCCGT 58.760 52.381 0.00 0.00 37.60 4.69
4253 6106 1.200252 CGCAGTGATATACTCCCTCCG 59.800 57.143 0.00 0.00 37.60 4.63
4254 6107 2.240279 ACGCAGTGATATACTCCCTCC 58.760 52.381 0.00 0.00 42.51 4.30
4281 6134 1.210155 GTGTTGACATGCGGCTTCC 59.790 57.895 0.00 0.00 0.00 3.46
4359 6307 1.133790 CAAGTTATGGCAGCAAGGAGC 59.866 52.381 0.00 0.00 46.19 4.70
4396 6347 9.114965 CGTTTATATCCGAGTTTATAGTGTCTG 57.885 37.037 0.00 0.00 0.00 3.51
4416 6903 3.005367 CCTGTCAAAGGGCAAACGTTTAT 59.995 43.478 14.20 0.00 43.15 1.40
4429 6918 0.605319 TAGGGCGCAACCTGTCAAAG 60.605 55.000 14.72 0.00 42.02 2.77
4573 7065 5.474532 AGAAATCTTCTACATTTGCACAGCA 59.525 36.000 0.00 0.00 38.49 4.41
4704 7216 2.620886 CCTGTTCTCTCGGACCCTCTTA 60.621 54.545 0.00 0.00 0.00 2.10
4908 9079 2.483877 CCGAAGCAATCAAGTAACTGCA 59.516 45.455 0.00 0.00 37.26 4.41
4911 9082 2.618045 CCCCCGAAGCAATCAAGTAACT 60.618 50.000 0.00 0.00 0.00 2.24
4932 9103 4.994907 AACTGTTCAGGTAACCAAAACC 57.005 40.909 4.82 0.00 37.27 3.27
4947 9118 2.030805 GCAAAGAGGCGATCAAACTGTT 60.031 45.455 0.00 0.00 0.00 3.16
4948 9119 1.537202 GCAAAGAGGCGATCAAACTGT 59.463 47.619 0.00 0.00 0.00 3.55
4951 9122 2.927553 ATGCAAAGAGGCGATCAAAC 57.072 45.000 0.00 0.00 36.28 2.93
4955 9126 2.939103 ACAAGTATGCAAAGAGGCGATC 59.061 45.455 0.00 0.00 36.28 3.69
4956 9127 2.939103 GACAAGTATGCAAAGAGGCGAT 59.061 45.455 0.00 0.00 36.28 4.58
4958 9129 1.398390 GGACAAGTATGCAAAGAGGCG 59.602 52.381 0.00 0.00 36.28 5.52
4985 9156 4.716784 TCCCTGCATATGATCTACCATACC 59.283 45.833 6.97 0.00 32.45 2.73
4988 9159 5.848286 TTTCCCTGCATATGATCTACCAT 57.152 39.130 6.97 0.00 0.00 3.55
5021 9192 7.230309 TGACACCAAACAATGTGAAGAATATGA 59.770 33.333 0.00 0.00 36.35 2.15
5022 9193 7.369607 TGACACCAAACAATGTGAAGAATATG 58.630 34.615 0.00 0.00 36.35 1.78
5023 9194 7.523293 TGACACCAAACAATGTGAAGAATAT 57.477 32.000 0.00 0.00 36.35 1.28
5024 9195 6.951062 TGACACCAAACAATGTGAAGAATA 57.049 33.333 0.00 0.00 36.35 1.75
5033 9204 5.097529 GTGCTATGATGACACCAAACAATG 58.902 41.667 0.00 0.00 0.00 2.82
5044 9215 3.923461 GCTAGAATCGGTGCTATGATGAC 59.077 47.826 0.00 0.00 0.00 3.06
5045 9216 3.056536 GGCTAGAATCGGTGCTATGATGA 60.057 47.826 0.00 0.00 0.00 2.92
5111 9301 3.321111 GCTAGATACGTCCATTTGAGGGA 59.679 47.826 0.00 0.00 33.08 4.20
5112 9302 3.069586 TGCTAGATACGTCCATTTGAGGG 59.930 47.826 0.00 0.00 33.08 4.30
5113 9303 4.322080 TGCTAGATACGTCCATTTGAGG 57.678 45.455 0.00 0.00 34.98 3.86
5114 9304 5.532557 TGATGCTAGATACGTCCATTTGAG 58.467 41.667 0.00 0.00 0.00 3.02
5115 9305 5.529581 TGATGCTAGATACGTCCATTTGA 57.470 39.130 0.00 0.00 0.00 2.69
5116 9306 5.755375 ACTTGATGCTAGATACGTCCATTTG 59.245 40.000 0.00 0.00 0.00 2.32
5117 9307 5.918608 ACTTGATGCTAGATACGTCCATTT 58.081 37.500 0.00 0.00 0.00 2.32
5118 9308 5.537300 ACTTGATGCTAGATACGTCCATT 57.463 39.130 0.00 0.00 0.00 3.16
5119 9309 5.537300 AACTTGATGCTAGATACGTCCAT 57.463 39.130 0.00 0.00 0.00 3.41
5120 9310 5.593095 ACTAACTTGATGCTAGATACGTCCA 59.407 40.000 0.00 0.00 0.00 4.02
5121 9311 5.915758 CACTAACTTGATGCTAGATACGTCC 59.084 44.000 0.00 0.00 0.00 4.79
5122 9312 5.399892 GCACTAACTTGATGCTAGATACGTC 59.600 44.000 0.00 0.00 36.40 4.34
5123 9313 5.282510 GCACTAACTTGATGCTAGATACGT 58.717 41.667 0.00 0.00 36.40 3.57
5124 9314 5.814314 GCACTAACTTGATGCTAGATACG 57.186 43.478 0.00 0.00 36.40 3.06
5132 9322 7.439356 TGATTGTATCTAGCACTAACTTGATGC 59.561 37.037 0.00 0.00 39.74 3.91
5133 9323 8.877808 TGATTGTATCTAGCACTAACTTGATG 57.122 34.615 0.00 0.00 34.60 3.07
5135 9325 9.890629 AAATGATTGTATCTAGCACTAACTTGA 57.109 29.630 0.00 0.00 0.00 3.02
5136 9326 9.926751 CAAATGATTGTATCTAGCACTAACTTG 57.073 33.333 0.00 0.00 0.00 3.16
5137 9327 9.890629 TCAAATGATTGTATCTAGCACTAACTT 57.109 29.630 0.00 0.00 37.79 2.66
5138 9328 9.539825 CTCAAATGATTGTATCTAGCACTAACT 57.460 33.333 0.00 0.00 37.79 2.24
5139 9329 8.768955 CCTCAAATGATTGTATCTAGCACTAAC 58.231 37.037 0.00 0.00 37.79 2.34
5140 9330 8.704668 TCCTCAAATGATTGTATCTAGCACTAA 58.295 33.333 0.00 0.00 37.79 2.24
5141 9331 8.250143 TCCTCAAATGATTGTATCTAGCACTA 57.750 34.615 0.00 0.00 37.79 2.74
5142 9332 7.129457 TCCTCAAATGATTGTATCTAGCACT 57.871 36.000 0.00 0.00 37.79 4.40
5143 9333 7.280876 TGTTCCTCAAATGATTGTATCTAGCAC 59.719 37.037 0.00 0.00 37.79 4.40
5144 9334 7.337938 TGTTCCTCAAATGATTGTATCTAGCA 58.662 34.615 0.00 0.00 37.79 3.49
5145 9335 7.792374 TGTTCCTCAAATGATTGTATCTAGC 57.208 36.000 0.00 0.00 37.79 3.42
5146 9336 8.341173 GCTTGTTCCTCAAATGATTGTATCTAG 58.659 37.037 0.00 0.00 37.79 2.43
5147 9337 8.049117 AGCTTGTTCCTCAAATGATTGTATCTA 58.951 33.333 0.00 0.00 37.79 1.98
5148 9338 6.888632 AGCTTGTTCCTCAAATGATTGTATCT 59.111 34.615 0.00 0.00 37.79 1.98
5149 9339 7.093322 AGCTTGTTCCTCAAATGATTGTATC 57.907 36.000 0.00 0.00 37.79 2.24
5150 9340 7.472334 AAGCTTGTTCCTCAAATGATTGTAT 57.528 32.000 0.00 0.00 37.79 2.29
5151 9341 6.899393 AAGCTTGTTCCTCAAATGATTGTA 57.101 33.333 0.00 0.00 37.79 2.41
5152 9342 5.796424 AAGCTTGTTCCTCAAATGATTGT 57.204 34.783 0.00 0.00 37.79 2.71
5153 9343 6.151648 TCCTAAGCTTGTTCCTCAAATGATTG 59.848 38.462 9.86 0.00 35.48 2.67
5154 9344 6.151817 GTCCTAAGCTTGTTCCTCAAATGATT 59.848 38.462 9.86 0.00 35.48 2.57
5155 9345 5.649831 GTCCTAAGCTTGTTCCTCAAATGAT 59.350 40.000 9.86 0.00 35.48 2.45
5156 9346 5.003804 GTCCTAAGCTTGTTCCTCAAATGA 58.996 41.667 9.86 0.00 35.48 2.57
5157 9347 4.761739 TGTCCTAAGCTTGTTCCTCAAATG 59.238 41.667 9.86 0.00 35.48 2.32
5158 9348 4.985538 TGTCCTAAGCTTGTTCCTCAAAT 58.014 39.130 9.86 0.00 35.48 2.32
5159 9349 4.431416 TGTCCTAAGCTTGTTCCTCAAA 57.569 40.909 9.86 0.00 35.48 2.69
5160 9350 4.141482 ACTTGTCCTAAGCTTGTTCCTCAA 60.141 41.667 9.86 6.37 34.61 3.02
5161 9351 3.391296 ACTTGTCCTAAGCTTGTTCCTCA 59.609 43.478 9.86 0.00 0.00 3.86
5162 9352 4.009370 ACTTGTCCTAAGCTTGTTCCTC 57.991 45.455 9.86 0.00 0.00 3.71
5163 9353 4.439253 AACTTGTCCTAAGCTTGTTCCT 57.561 40.909 9.86 0.00 0.00 3.36
5164 9354 5.515797 AAAACTTGTCCTAAGCTTGTTCC 57.484 39.130 9.86 0.00 0.00 3.62
5184 9374 2.289010 GGTACTCCCTTCGTCCGAAAAA 60.289 50.000 3.52 0.00 33.34 1.94
5185 9375 1.273327 GGTACTCCCTTCGTCCGAAAA 59.727 52.381 3.52 0.00 33.34 2.29
5186 9376 0.890683 GGTACTCCCTTCGTCCGAAA 59.109 55.000 3.52 0.00 33.34 3.46
5187 9377 0.038744 AGGTACTCCCTTCGTCCGAA 59.961 55.000 1.81 1.81 42.73 4.30
5188 9378 0.911769 TAGGTACTCCCTTCGTCCGA 59.088 55.000 0.00 0.00 42.73 4.55
5189 9379 1.978454 ATAGGTACTCCCTTCGTCCG 58.022 55.000 0.00 0.00 42.73 4.79
5190 9380 3.181468 CCAAATAGGTACTCCCTTCGTCC 60.181 52.174 0.00 0.00 42.73 4.79
5191 9381 3.740452 GCCAAATAGGTACTCCCTTCGTC 60.740 52.174 0.00 0.00 42.73 4.20
5192 9382 2.169978 GCCAAATAGGTACTCCCTTCGT 59.830 50.000 0.00 0.00 42.73 3.85
5193 9383 2.802057 CGCCAAATAGGTACTCCCTTCG 60.802 54.545 0.00 0.00 42.73 3.79
5194 9384 2.433239 TCGCCAAATAGGTACTCCCTTC 59.567 50.000 0.00 0.00 42.73 3.46
5195 9385 2.434702 CTCGCCAAATAGGTACTCCCTT 59.565 50.000 0.00 0.00 42.73 3.95
5197 9387 1.540580 GCTCGCCAAATAGGTACTCCC 60.541 57.143 0.00 0.00 41.75 4.30
5198 9388 1.540580 GGCTCGCCAAATAGGTACTCC 60.541 57.143 2.41 0.00 40.61 3.85
5199 9389 1.413077 AGGCTCGCCAAATAGGTACTC 59.587 52.381 11.02 0.00 40.61 2.59
5200 9390 1.497161 AGGCTCGCCAAATAGGTACT 58.503 50.000 11.02 0.00 40.61 2.73
5240 9430 9.539825 TGTTTTATTGTTGCAATAAGTGTGATT 57.460 25.926 14.19 0.00 0.00 2.57
5241 9431 9.539825 TTGTTTTATTGTTGCAATAAGTGTGAT 57.460 25.926 14.19 0.00 0.00 3.06
5242 9432 8.812329 GTTGTTTTATTGTTGCAATAAGTGTGA 58.188 29.630 14.19 0.00 0.00 3.58
5243 9433 8.598924 TGTTGTTTTATTGTTGCAATAAGTGTG 58.401 29.630 14.19 0.00 0.00 3.82
5244 9434 8.709386 TGTTGTTTTATTGTTGCAATAAGTGT 57.291 26.923 14.19 0.62 0.00 3.55
5245 9435 9.583530 CATGTTGTTTTATTGTTGCAATAAGTG 57.416 29.630 14.19 0.00 0.00 3.16
5246 9436 8.772705 CCATGTTGTTTTATTGTTGCAATAAGT 58.227 29.630 14.19 5.64 0.00 2.24
5247 9437 7.745594 GCCATGTTGTTTTATTGTTGCAATAAG 59.254 33.333 14.19 0.00 0.00 1.73
5248 9438 7.227314 TGCCATGTTGTTTTATTGTTGCAATAA 59.773 29.630 11.24 11.24 0.00 1.40
5249 9439 6.707608 TGCCATGTTGTTTTATTGTTGCAATA 59.292 30.769 0.59 0.00 0.00 1.90
5250 9440 5.530171 TGCCATGTTGTTTTATTGTTGCAAT 59.470 32.000 0.59 0.00 0.00 3.56
5251 9441 4.877823 TGCCATGTTGTTTTATTGTTGCAA 59.122 33.333 0.00 0.00 0.00 4.08
5252 9442 4.445453 TGCCATGTTGTTTTATTGTTGCA 58.555 34.783 0.00 0.00 0.00 4.08
5253 9443 5.415415 TTGCCATGTTGTTTTATTGTTGC 57.585 34.783 0.00 0.00 0.00 4.17
5254 9444 7.070798 GTGATTGCCATGTTGTTTTATTGTTG 58.929 34.615 0.00 0.00 0.00 3.33
5255 9445 6.765036 TGTGATTGCCATGTTGTTTTATTGTT 59.235 30.769 0.00 0.00 0.00 2.83
5256 9446 6.202570 GTGTGATTGCCATGTTGTTTTATTGT 59.797 34.615 0.00 0.00 0.00 2.71
5257 9447 6.424509 AGTGTGATTGCCATGTTGTTTTATTG 59.575 34.615 0.00 0.00 0.00 1.90
5258 9448 6.523840 AGTGTGATTGCCATGTTGTTTTATT 58.476 32.000 0.00 0.00 0.00 1.40
5259 9449 6.100404 AGTGTGATTGCCATGTTGTTTTAT 57.900 33.333 0.00 0.00 0.00 1.40
5260 9450 5.528043 AGTGTGATTGCCATGTTGTTTTA 57.472 34.783 0.00 0.00 0.00 1.52
5261 9451 4.405116 AGTGTGATTGCCATGTTGTTTT 57.595 36.364 0.00 0.00 0.00 2.43
5262 9452 4.405116 AAGTGTGATTGCCATGTTGTTT 57.595 36.364 0.00 0.00 0.00 2.83
5263 9453 5.726980 ATAAGTGTGATTGCCATGTTGTT 57.273 34.783 0.00 0.00 0.00 2.83
5264 9454 5.472148 CAATAAGTGTGATTGCCATGTTGT 58.528 37.500 0.00 0.00 0.00 3.32
5273 9463 8.434661 GTTTTATTGGTGCAATAAGTGTGATTG 58.565 33.333 0.00 0.00 43.92 2.67
5274 9464 8.147058 TGTTTTATTGGTGCAATAAGTGTGATT 58.853 29.630 0.00 0.00 43.92 2.57
5305 9495 3.745975 TCATCCAGTTCGTTGTGATTGTC 59.254 43.478 0.00 0.00 0.00 3.18
5313 9503 6.849588 TCATTATCATCATCCAGTTCGTTG 57.150 37.500 0.00 0.00 0.00 4.10
5338 9528 8.562892 CAGTTTTCGCTATATGGAATGAAGAAT 58.437 33.333 0.00 0.00 0.00 2.40
5362 9552 1.323271 TAGGCAAGGCTCCTCGTCAG 61.323 60.000 0.00 0.00 35.21 3.51
5368 9558 1.003696 GTTGAAGTAGGCAAGGCTCCT 59.996 52.381 0.00 0.00 37.72 3.69
5429 9619 8.903820 ACAAAAGATTTAAGAGTAGCAAACAGT 58.096 29.630 0.00 0.00 0.00 3.55
5434 9624 9.436957 CTCCTACAAAAGATTTAAGAGTAGCAA 57.563 33.333 0.00 0.00 0.00 3.91
5468 9658 4.333372 TCCAAAAACAAGTGAGTCGTTACC 59.667 41.667 0.00 0.00 0.00 2.85
5470 9660 6.687081 ATTCCAAAAACAAGTGAGTCGTTA 57.313 33.333 0.00 0.00 0.00 3.18
5483 9673 8.357402 ACAGTTCATGGTAAGTATTCCAAAAAC 58.643 33.333 0.00 0.00 37.27 2.43
5486 9676 9.575868 TTTACAGTTCATGGTAAGTATTCCAAA 57.424 29.630 0.00 0.00 37.27 3.28
5491 9681 6.888088 GGGGTTTACAGTTCATGGTAAGTATT 59.112 38.462 0.00 0.00 31.71 1.89
5494 9684 4.352893 AGGGGTTTACAGTTCATGGTAAGT 59.647 41.667 0.00 0.00 31.71 2.24
5499 9689 3.433306 TCAGGGGTTTACAGTTCATGG 57.567 47.619 0.00 0.00 0.00 3.66
5517 9707 4.825085 GTGGTGTACAAAGGAAGGATTTCA 59.175 41.667 0.00 0.00 34.90 2.69
5529 9719 5.298989 AGAAGTGGTATGTGGTGTACAAA 57.701 39.130 0.00 0.00 43.77 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.