Multiple sequence alignment - TraesCS3A01G394100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G394100 chr3A 100.000 5491 0 0 1 5491 641830530 641825040 0.000000e+00 10141.0
1 TraesCS3A01G394100 chr3A 93.600 250 14 2 337 586 641860558 641860311 6.720000e-99 372.0
2 TraesCS3A01G394100 chr3A 96.447 197 6 1 143 338 701931424 701931228 1.910000e-84 324.0
3 TraesCS3A01G394100 chr3A 96.447 197 6 1 143 338 736731074 736731270 1.910000e-84 324.0
4 TraesCS3A01G394100 chr3A 98.582 141 2 0 3 143 641861247 641861107 3.280000e-62 250.0
5 TraesCS3A01G394100 chr3A 96.875 32 0 1 4478 4509 597829787 597829817 1.000000e-02 52.8
6 TraesCS3A01G394100 chr3D 92.463 4670 225 59 885 5491 502964767 502960162 0.000000e+00 6556.0
7 TraesCS3A01G394100 chr3D 93.158 190 10 3 157 346 552564313 552564127 5.420000e-70 276.0
8 TraesCS3A01G394100 chr3D 87.225 227 23 3 587 808 388319146 388318921 2.540000e-63 254.0
9 TraesCS3A01G394100 chr3B 92.945 3019 153 31 2500 5491 664113922 664110937 0.000000e+00 4340.0
10 TraesCS3A01G394100 chr3B 93.662 1625 85 4 885 2501 664115618 664114004 0.000000e+00 2414.0
11 TraesCS3A01G394100 chr6A 88.372 430 42 7 157 586 455698628 455699049 1.360000e-140 510.0
12 TraesCS3A01G394100 chr6A 85.294 204 22 6 160 358 563717107 563716907 2.590000e-48 204.0
13 TraesCS3A01G394100 chr5B 83.807 457 46 17 157 587 594705796 594706250 5.120000e-110 409.0
14 TraesCS3A01G394100 chr5B 92.063 189 12 3 158 346 640551435 640551250 4.220000e-66 263.0
15 TraesCS3A01G394100 chr2A 92.913 254 15 1 336 586 19624034 19624287 3.130000e-97 366.0
16 TraesCS3A01G394100 chr2A 93.200 250 15 2 337 586 137165583 137165336 3.130000e-97 366.0
17 TraesCS3A01G394100 chr2A 95.522 201 8 1 143 342 74565339 74565539 2.470000e-83 320.0
18 TraesCS3A01G394100 chr2A 97.872 141 3 0 3 143 535268022 535268162 1.530000e-60 244.0
19 TraesCS3A01G394100 chr7A 92.800 250 16 2 337 586 154373644 154373891 1.450000e-95 361.0
20 TraesCS3A01G394100 chr7A 92.430 251 17 2 336 586 456206280 456206032 1.880000e-94 357.0
21 TraesCS3A01G394100 chr7A 96.954 197 5 1 143 338 96003433 96003237 4.100000e-86 329.0
22 TraesCS3A01G394100 chr7A 96.954 197 5 1 143 338 729514932 729515128 4.100000e-86 329.0
23 TraesCS3A01G394100 chr7A 96.454 141 5 0 3 143 96003688 96003548 3.310000e-57 233.0
24 TraesCS3A01G394100 chr7A 96.454 141 5 0 3 143 653372476 653372616 3.310000e-57 233.0
25 TraesCS3A01G394100 chr7A 96.454 141 5 0 3 143 653388509 653388649 3.310000e-57 233.0
26 TraesCS3A01G394100 chr7A 96.875 32 0 1 4478 4509 566028968 566028998 1.000000e-02 52.8
27 TraesCS3A01G394100 chr5A 92.800 250 16 2 337 586 707143671 707143424 1.450000e-95 361.0
28 TraesCS3A01G394100 chr5A 97.163 141 4 0 3 143 119993494 119993354 7.110000e-59 239.0
29 TraesCS3A01G394100 chr1A 92.490 253 16 1 337 586 471988651 471988903 5.230000e-95 359.0
30 TraesCS3A01G394100 chr1A 97.409 193 5 0 146 338 135595561 135595753 4.100000e-86 329.0
31 TraesCS3A01G394100 chr1A 92.233 103 8 0 3210 3312 58344885 58344987 4.430000e-31 147.0
32 TraesCS3A01G394100 chr1D 92.126 254 17 2 336 586 211532427 211532680 6.770000e-94 355.0
33 TraesCS3A01G394100 chr1D 88.546 227 21 2 587 808 137147565 137147339 2.520000e-68 270.0
34 TraesCS3A01G394100 chr1D 94.545 110 6 0 3203 3312 470825917 470826026 2.630000e-38 171.0
35 TraesCS3A01G394100 chr4A 96.954 197 5 1 143 338 33029843 33030039 4.100000e-86 329.0
36 TraesCS3A01G394100 chr4A 96.447 197 6 1 143 338 11783991 11783795 1.910000e-84 324.0
37 TraesCS3A01G394100 chr4A 97.163 141 4 0 3 143 11778619 11778479 7.110000e-59 239.0
38 TraesCS3A01G394100 chr4A 96.454 141 5 0 3 143 33029588 33029728 3.310000e-57 233.0
39 TraesCS3A01G394100 chr4A 96.454 141 5 0 3 143 191163984 191163844 3.310000e-57 233.0
40 TraesCS3A01G394100 chr4A 96.875 32 0 1 4478 4509 174387615 174387645 1.000000e-02 52.8
41 TraesCS3A01G394100 chr4A 96.875 32 0 1 4478 4509 603658317 603658287 1.000000e-02 52.8
42 TraesCS3A01G394100 chr7D 88.106 227 22 2 587 808 547880457 547880683 1.170000e-66 265.0
43 TraesCS3A01G394100 chr7D 87.225 227 24 2 587 808 297759933 297760159 2.540000e-63 254.0
44 TraesCS3A01G394100 chr7D 87.281 228 20 6 587 808 530031358 530031134 9.130000e-63 252.0
45 TraesCS3A01G394100 chr7D 92.784 97 7 0 3216 3312 561618586 561618490 2.060000e-29 141.0
46 TraesCS3A01G394100 chr7B 88.106 227 22 2 587 808 394068874 394068648 1.170000e-66 265.0
47 TraesCS3A01G394100 chr5D 88.479 217 21 1 596 808 92912728 92912512 5.460000e-65 259.0
48 TraesCS3A01G394100 chr5D 87.225 227 24 2 587 808 365507576 365507350 2.540000e-63 254.0
49 TraesCS3A01G394100 chr4D 87.665 227 23 2 587 808 298846793 298847019 5.460000e-65 259.0
50 TraesCS3A01G394100 chr4D 88.482 191 18 2 159 345 503907464 503907274 1.540000e-55 228.0
51 TraesCS3A01G394100 chrUn 86.441 236 19 12 157 382 254092778 254093010 4.250000e-61 246.0
52 TraesCS3A01G394100 chrUn 93.814 97 6 0 3216 3312 43011311 43011215 4.430000e-31 147.0
53 TraesCS3A01G394100 chrUn 92.233 103 8 0 3210 3312 43185083 43185185 4.430000e-31 147.0
54 TraesCS3A01G394100 chrUn 92.233 103 8 0 3210 3312 394795495 394795597 4.430000e-31 147.0
55 TraesCS3A01G394100 chrUn 93.814 97 6 0 3216 3312 431281541 431281445 4.430000e-31 147.0
56 TraesCS3A01G394100 chr1B 89.785 186 17 2 160 344 681751374 681751190 2.560000e-58 237.0
57 TraesCS3A01G394100 chr1B 89.247 186 18 2 160 344 681745742 681745558 1.190000e-56 231.0
58 TraesCS3A01G394100 chr2D 95.455 110 5 0 3203 3312 630722593 630722484 5.650000e-40 176.0
59 TraesCS3A01G394100 chr6D 92.308 91 7 0 3222 3312 2132732 2132822 4.460000e-26 130.0
60 TraesCS3A01G394100 chr6D 92.222 90 7 0 3222 3311 4206896 4206985 1.610000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G394100 chr3A 641825040 641830530 5490 True 10141 10141 100.0000 1 5491 1 chr3A.!!$R1 5490
1 TraesCS3A01G394100 chr3A 641860311 641861247 936 True 311 372 96.0910 3 586 2 chr3A.!!$R3 583
2 TraesCS3A01G394100 chr3D 502960162 502964767 4605 True 6556 6556 92.4630 885 5491 1 chr3D.!!$R2 4606
3 TraesCS3A01G394100 chr3B 664110937 664115618 4681 True 3377 4340 93.3035 885 5491 2 chr3B.!!$R1 4606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 977 0.036010 AGGCGAAACAGATGAGGTGG 60.036 55.0 0.00 0.00 0.00 4.61 F
868 1222 0.108585 GTCTGGAGTTTCCTGCCACA 59.891 55.0 0.00 0.00 37.46 4.17 F
1654 2044 0.245539 CTGTACCTCGCTTTCCGGAA 59.754 55.0 14.35 14.35 37.59 4.30 F
1977 2368 0.462581 TCCATTCAGCTGACCGATGC 60.463 55.0 18.03 0.00 0.00 3.91 F
3758 4246 0.824759 AACATGAGTAGACCGCCTCC 59.175 55.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1892 0.376852 CCCACACAACACACACGAAG 59.623 55.0 0.00 0.00 0.00 3.79 R
1735 2126 0.578683 CGGTCAATGTATGCAGCGAG 59.421 55.0 0.00 0.00 34.33 5.03 R
3115 3600 0.169672 CGAACAGAAGGCATGCAAGG 59.830 55.0 21.36 6.28 0.00 3.61 R
3974 4474 0.039437 GTCGAACCTCACTCGAAGCA 60.039 55.0 0.00 0.00 46.13 3.91 R
5290 5806 0.597568 TGCCCACTCAAATTTGCTCG 59.402 50.0 13.54 6.83 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 9.167387 ACCTAACATATTTAGGGCAAGTACTAT 57.833 33.333 19.36 0.00 44.47 2.12
143 144 1.008875 ACACATACGTGACAGCAGCG 61.009 55.000 0.00 0.00 46.80 5.18
144 145 1.008875 CACATACGTGACAGCAGCGT 61.009 55.000 0.00 0.00 46.80 5.07
145 146 0.524414 ACATACGTGACAGCAGCGTA 59.476 50.000 0.00 0.00 43.66 4.42
146 147 0.914551 CATACGTGACAGCAGCGTAC 59.085 55.000 0.00 0.00 42.60 3.67
155 254 0.388649 CAGCAGCGTACGAAGGAGTT 60.389 55.000 21.65 0.00 0.00 3.01
188 287 1.598701 GCAGAGCGCTCCCCAAAAAT 61.599 55.000 32.94 9.90 37.77 1.82
233 332 0.512952 CTCAAAGAGGTGCGGTTTCG 59.487 55.000 0.00 0.00 39.81 3.46
340 691 0.321996 GGAAGGAGAAGTTCTGGCGT 59.678 55.000 10.90 0.00 0.00 5.68
345 696 2.665185 GAAGTTCTGGCGTGGCGT 60.665 61.111 0.00 0.00 0.00 5.68
401 755 5.303971 GTGGATATCCCTCTTGTTCTCATG 58.696 45.833 19.34 0.00 35.38 3.07
415 769 2.167662 TCTCATGCTCGTACAAGTGGA 58.832 47.619 0.00 0.00 0.00 4.02
448 802 3.859061 CTTATAAGGAGGTCCAACCCC 57.141 52.381 4.42 0.00 39.75 4.95
493 847 4.649088 AAACTTTTGTACCACCTCTTGC 57.351 40.909 0.00 0.00 0.00 4.01
500 854 0.698238 TACCACCTCTTGCCTTGCAT 59.302 50.000 0.00 0.00 38.76 3.96
517 871 2.024464 TGCATAAATGGGCTAAGTGGGT 60.024 45.455 0.00 0.00 0.00 4.51
557 911 5.185828 GGAATTTCTGAAACTGCTATTGGGT 59.814 40.000 4.73 0.00 0.00 4.51
581 935 5.420725 AGGCCCAAAATAGACAAAATTCC 57.579 39.130 0.00 0.00 0.00 3.01
586 940 5.870978 CCCAAAATAGACAAAATTCCAGCAG 59.129 40.000 0.00 0.00 0.00 4.24
587 941 6.458210 CCAAAATAGACAAAATTCCAGCAGT 58.542 36.000 0.00 0.00 0.00 4.40
588 942 7.309744 CCCAAAATAGACAAAATTCCAGCAGTA 60.310 37.037 0.00 0.00 0.00 2.74
589 943 8.087750 CCAAAATAGACAAAATTCCAGCAGTAA 58.912 33.333 0.00 0.00 0.00 2.24
590 944 9.643693 CAAAATAGACAAAATTCCAGCAGTAAT 57.356 29.630 0.00 0.00 0.00 1.89
594 948 7.251704 AGACAAAATTCCAGCAGTAATATCG 57.748 36.000 0.00 0.00 0.00 2.92
595 949 5.821204 ACAAAATTCCAGCAGTAATATCGC 58.179 37.500 0.00 0.00 0.00 4.58
596 950 5.356751 ACAAAATTCCAGCAGTAATATCGCA 59.643 36.000 0.00 0.00 0.00 5.10
597 951 5.424121 AAATTCCAGCAGTAATATCGCAC 57.576 39.130 0.00 0.00 0.00 5.34
598 952 3.535280 TTCCAGCAGTAATATCGCACA 57.465 42.857 0.00 0.00 0.00 4.57
599 953 3.751479 TCCAGCAGTAATATCGCACAT 57.249 42.857 0.00 0.00 0.00 3.21
600 954 4.071961 TCCAGCAGTAATATCGCACATT 57.928 40.909 0.00 0.00 0.00 2.71
601 955 4.450976 TCCAGCAGTAATATCGCACATTT 58.549 39.130 0.00 0.00 0.00 2.32
602 956 4.881273 TCCAGCAGTAATATCGCACATTTT 59.119 37.500 0.00 0.00 0.00 1.82
603 957 5.356751 TCCAGCAGTAATATCGCACATTTTT 59.643 36.000 0.00 0.00 0.00 1.94
604 958 6.540551 TCCAGCAGTAATATCGCACATTTTTA 59.459 34.615 0.00 0.00 0.00 1.52
605 959 6.852853 CCAGCAGTAATATCGCACATTTTTAG 59.147 38.462 0.00 0.00 0.00 1.85
606 960 6.852853 CAGCAGTAATATCGCACATTTTTAGG 59.147 38.462 0.00 0.00 0.00 2.69
607 961 5.625311 GCAGTAATATCGCACATTTTTAGGC 59.375 40.000 0.00 0.00 0.00 3.93
615 969 3.896122 GCACATTTTTAGGCGAAACAGA 58.104 40.909 0.00 0.00 0.00 3.41
616 970 4.485163 GCACATTTTTAGGCGAAACAGAT 58.515 39.130 0.00 0.00 0.00 2.90
617 971 4.324402 GCACATTTTTAGGCGAAACAGATG 59.676 41.667 0.00 1.35 0.00 2.90
618 972 5.698832 CACATTTTTAGGCGAAACAGATGA 58.301 37.500 13.34 0.00 0.00 2.92
619 973 5.796935 CACATTTTTAGGCGAAACAGATGAG 59.203 40.000 13.34 5.77 0.00 2.90
620 974 5.106157 ACATTTTTAGGCGAAACAGATGAGG 60.106 40.000 13.34 0.00 0.00 3.86
621 975 3.695830 TTTAGGCGAAACAGATGAGGT 57.304 42.857 0.00 0.00 0.00 3.85
622 976 2.672961 TAGGCGAAACAGATGAGGTG 57.327 50.000 0.00 0.00 0.00 4.00
623 977 0.036010 AGGCGAAACAGATGAGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
624 978 1.648467 GGCGAAACAGATGAGGTGGC 61.648 60.000 0.00 0.00 0.00 5.01
625 979 1.970917 GCGAAACAGATGAGGTGGCG 61.971 60.000 0.00 0.00 0.00 5.69
626 980 0.389817 CGAAACAGATGAGGTGGCGA 60.390 55.000 0.00 0.00 0.00 5.54
627 981 1.363744 GAAACAGATGAGGTGGCGAG 58.636 55.000 0.00 0.00 0.00 5.03
628 982 0.687354 AAACAGATGAGGTGGCGAGT 59.313 50.000 0.00 0.00 0.00 4.18
629 983 1.557099 AACAGATGAGGTGGCGAGTA 58.443 50.000 0.00 0.00 0.00 2.59
630 984 1.557099 ACAGATGAGGTGGCGAGTAA 58.443 50.000 0.00 0.00 0.00 2.24
631 985 2.111384 ACAGATGAGGTGGCGAGTAAT 58.889 47.619 0.00 0.00 0.00 1.89
632 986 2.501723 ACAGATGAGGTGGCGAGTAATT 59.498 45.455 0.00 0.00 0.00 1.40
633 987 3.704566 ACAGATGAGGTGGCGAGTAATTA 59.295 43.478 0.00 0.00 0.00 1.40
634 988 4.161565 ACAGATGAGGTGGCGAGTAATTAA 59.838 41.667 0.00 0.00 0.00 1.40
635 989 5.163301 ACAGATGAGGTGGCGAGTAATTAAT 60.163 40.000 0.00 0.00 0.00 1.40
636 990 6.041637 ACAGATGAGGTGGCGAGTAATTAATA 59.958 38.462 0.00 0.00 0.00 0.98
637 991 6.929049 CAGATGAGGTGGCGAGTAATTAATAA 59.071 38.462 0.00 0.00 0.00 1.40
638 992 7.116948 CAGATGAGGTGGCGAGTAATTAATAAG 59.883 40.741 0.00 0.00 0.00 1.73
639 993 5.607477 TGAGGTGGCGAGTAATTAATAAGG 58.393 41.667 0.00 0.00 0.00 2.69
640 994 5.364446 TGAGGTGGCGAGTAATTAATAAGGA 59.636 40.000 0.00 0.00 0.00 3.36
641 995 6.126997 TGAGGTGGCGAGTAATTAATAAGGAA 60.127 38.462 0.00 0.00 0.00 3.36
642 996 6.655930 AGGTGGCGAGTAATTAATAAGGAAA 58.344 36.000 0.00 0.00 0.00 3.13
643 997 6.766467 AGGTGGCGAGTAATTAATAAGGAAAG 59.234 38.462 0.00 0.00 0.00 2.62
644 998 6.764560 GGTGGCGAGTAATTAATAAGGAAAGA 59.235 38.462 0.00 0.00 0.00 2.52
645 999 7.041984 GGTGGCGAGTAATTAATAAGGAAAGAG 60.042 40.741 0.00 0.00 0.00 2.85
646 1000 6.990349 TGGCGAGTAATTAATAAGGAAAGAGG 59.010 38.462 0.00 0.00 0.00 3.69
647 1001 6.427242 GGCGAGTAATTAATAAGGAAAGAGGG 59.573 42.308 0.00 0.00 0.00 4.30
648 1002 7.215085 GCGAGTAATTAATAAGGAAAGAGGGA 58.785 38.462 0.00 0.00 0.00 4.20
649 1003 7.171167 GCGAGTAATTAATAAGGAAAGAGGGAC 59.829 40.741 0.00 0.00 0.00 4.46
650 1004 8.202137 CGAGTAATTAATAAGGAAAGAGGGACA 58.798 37.037 0.00 0.00 0.00 4.02
652 1006 9.853177 AGTAATTAATAAGGAAAGAGGGACATG 57.147 33.333 0.00 0.00 0.00 3.21
653 1007 9.628500 GTAATTAATAAGGAAAGAGGGACATGT 57.372 33.333 0.00 0.00 0.00 3.21
654 1008 8.525290 AATTAATAAGGAAAGAGGGACATGTG 57.475 34.615 1.15 0.00 0.00 3.21
655 1009 2.206576 AAGGAAAGAGGGACATGTGC 57.793 50.000 9.16 9.16 0.00 4.57
656 1010 1.366319 AGGAAAGAGGGACATGTGCT 58.634 50.000 17.44 3.18 0.00 4.40
657 1011 2.551270 AGGAAAGAGGGACATGTGCTA 58.449 47.619 17.44 0.00 0.00 3.49
658 1012 2.912956 AGGAAAGAGGGACATGTGCTAA 59.087 45.455 17.44 0.00 0.00 3.09
659 1013 3.010420 GGAAAGAGGGACATGTGCTAAC 58.990 50.000 17.44 8.75 0.00 2.34
660 1014 3.559171 GGAAAGAGGGACATGTGCTAACA 60.559 47.826 17.44 0.00 41.58 2.41
662 1016 5.428253 GAAAGAGGGACATGTGCTAACATA 58.572 41.667 17.44 0.00 45.50 2.29
663 1017 5.435686 AAGAGGGACATGTGCTAACATAA 57.564 39.130 17.44 0.00 45.50 1.90
664 1018 4.770795 AGAGGGACATGTGCTAACATAAC 58.229 43.478 17.44 0.00 45.50 1.89
665 1019 4.471386 AGAGGGACATGTGCTAACATAACT 59.529 41.667 17.44 2.77 45.50 2.24
666 1020 5.661312 AGAGGGACATGTGCTAACATAACTA 59.339 40.000 17.44 0.00 45.50 2.24
667 1021 5.918608 AGGGACATGTGCTAACATAACTAG 58.081 41.667 17.44 0.00 45.50 2.57
668 1022 5.425539 AGGGACATGTGCTAACATAACTAGT 59.574 40.000 17.44 0.00 45.50 2.57
669 1023 6.070194 AGGGACATGTGCTAACATAACTAGTT 60.070 38.462 17.44 13.68 45.50 2.24
670 1024 7.125204 AGGGACATGTGCTAACATAACTAGTTA 59.875 37.037 17.41 17.41 45.50 2.24
671 1025 7.931948 GGGACATGTGCTAACATAACTAGTTAT 59.068 37.037 20.27 20.27 45.50 1.89
672 1026 9.326413 GGACATGTGCTAACATAACTAGTTATT 57.674 33.333 22.81 14.29 45.50 1.40
674 1028 9.667107 ACATGTGCTAACATAACTAGTTATTGT 57.333 29.630 22.81 19.79 45.50 2.71
698 1052 9.936759 TGTAACATTACACATATCAAGACAAGA 57.063 29.630 0.22 0.00 38.64 3.02
701 1055 9.671279 AACATTACACATATCAAGACAAGATGA 57.329 29.630 0.00 0.00 0.00 2.92
702 1056 9.322773 ACATTACACATATCAAGACAAGATGAG 57.677 33.333 0.00 0.00 0.00 2.90
703 1057 9.322773 CATTACACATATCAAGACAAGATGAGT 57.677 33.333 0.00 0.00 0.00 3.41
704 1058 8.932945 TTACACATATCAAGACAAGATGAGTC 57.067 34.615 0.00 0.00 36.26 3.36
706 1060 8.298729 ACACATATCAAGACAAGATGAGTCTA 57.701 34.615 0.00 0.00 45.11 2.59
707 1061 8.194104 ACACATATCAAGACAAGATGAGTCTAC 58.806 37.037 0.00 0.00 45.11 2.59
708 1062 8.193438 CACATATCAAGACAAGATGAGTCTACA 58.807 37.037 0.00 0.00 45.11 2.74
709 1063 8.753133 ACATATCAAGACAAGATGAGTCTACAA 58.247 33.333 0.00 0.00 45.11 2.41
710 1064 9.029243 CATATCAAGACAAGATGAGTCTACAAC 57.971 37.037 0.00 0.00 45.11 3.32
711 1065 5.784177 TCAAGACAAGATGAGTCTACAACC 58.216 41.667 0.00 0.00 45.11 3.77
712 1066 5.540337 TCAAGACAAGATGAGTCTACAACCT 59.460 40.000 0.00 0.00 45.11 3.50
713 1067 6.719829 TCAAGACAAGATGAGTCTACAACCTA 59.280 38.462 0.00 0.00 45.11 3.08
714 1068 7.232737 TCAAGACAAGATGAGTCTACAACCTAA 59.767 37.037 0.00 0.00 45.11 2.69
715 1069 7.726033 AGACAAGATGAGTCTACAACCTAAT 57.274 36.000 0.00 0.00 44.10 1.73
716 1070 8.824756 AGACAAGATGAGTCTACAACCTAATA 57.175 34.615 0.00 0.00 44.10 0.98
717 1071 9.256228 AGACAAGATGAGTCTACAACCTAATAA 57.744 33.333 0.00 0.00 44.10 1.40
718 1072 9.871238 GACAAGATGAGTCTACAACCTAATAAA 57.129 33.333 0.00 0.00 33.30 1.40
748 1102 8.583810 GTGTTATATGACACCGTACATATGTT 57.416 34.615 17.67 0.00 43.16 2.71
749 1103 9.681692 GTGTTATATGACACCGTACATATGTTA 57.318 33.333 17.67 0.00 43.16 2.41
750 1104 9.681692 TGTTATATGACACCGTACATATGTTAC 57.318 33.333 14.77 9.15 39.20 2.50
751 1105 9.903682 GTTATATGACACCGTACATATGTTACT 57.096 33.333 14.77 0.00 39.20 2.24
753 1107 5.252969 TGACACCGTACATATGTTACTCC 57.747 43.478 14.77 0.00 0.00 3.85
754 1108 4.951715 TGACACCGTACATATGTTACTCCT 59.048 41.667 14.77 0.00 0.00 3.69
755 1109 5.066893 TGACACCGTACATATGTTACTCCTC 59.933 44.000 14.77 3.82 0.00 3.71
756 1110 4.951715 ACACCGTACATATGTTACTCCTCA 59.048 41.667 14.77 0.00 0.00 3.86
757 1111 5.163581 ACACCGTACATATGTTACTCCTCAC 60.164 44.000 14.77 2.36 0.00 3.51
758 1112 5.067413 CACCGTACATATGTTACTCCTCACT 59.933 44.000 14.77 0.00 0.00 3.41
759 1113 6.261603 CACCGTACATATGTTACTCCTCACTA 59.738 42.308 14.77 0.00 0.00 2.74
760 1114 7.002879 ACCGTACATATGTTACTCCTCACTAT 58.997 38.462 14.77 0.00 0.00 2.12
761 1115 8.159447 ACCGTACATATGTTACTCCTCACTATA 58.841 37.037 14.77 0.00 0.00 1.31
762 1116 8.666573 CCGTACATATGTTACTCCTCACTATAG 58.333 40.741 14.77 0.00 0.00 1.31
763 1117 9.433153 CGTACATATGTTACTCCTCACTATAGA 57.567 37.037 14.77 0.00 0.00 1.98
810 1164 9.991906 TGCATGTTACTAGTCTAAGTTACTTTT 57.008 29.630 1.94 0.00 31.82 2.27
838 1192 9.546428 TTTAAGACAAACTAGTGTAAGTTACCC 57.454 33.333 10.51 0.00 38.76 3.69
839 1193 6.736110 AGACAAACTAGTGTAAGTTACCCA 57.264 37.500 10.51 0.00 38.76 4.51
840 1194 7.312415 AGACAAACTAGTGTAAGTTACCCAT 57.688 36.000 10.51 0.00 38.76 4.00
841 1195 7.742767 AGACAAACTAGTGTAAGTTACCCATT 58.257 34.615 10.51 0.00 38.76 3.16
842 1196 7.660208 AGACAAACTAGTGTAAGTTACCCATTG 59.340 37.037 10.51 9.17 38.76 2.82
843 1197 7.284820 ACAAACTAGTGTAAGTTACCCATTGT 58.715 34.615 10.51 9.69 38.76 2.71
844 1198 7.227910 ACAAACTAGTGTAAGTTACCCATTGTG 59.772 37.037 10.51 3.93 38.76 3.33
845 1199 6.675413 ACTAGTGTAAGTTACCCATTGTGA 57.325 37.500 10.51 0.00 0.00 3.58
846 1200 6.461640 ACTAGTGTAAGTTACCCATTGTGAC 58.538 40.000 10.51 0.00 33.80 3.67
847 1201 5.562298 AGTGTAAGTTACCCATTGTGACT 57.438 39.130 10.51 2.08 45.00 3.41
848 1202 6.675413 AGTGTAAGTTACCCATTGTGACTA 57.325 37.500 10.51 0.00 42.51 2.59
849 1203 6.698380 AGTGTAAGTTACCCATTGTGACTAG 58.302 40.000 10.51 0.00 42.51 2.57
850 1204 6.269307 AGTGTAAGTTACCCATTGTGACTAGT 59.731 38.462 10.51 0.00 42.51 2.57
851 1205 6.589139 GTGTAAGTTACCCATTGTGACTAGTC 59.411 42.308 16.32 16.32 42.51 2.59
852 1206 6.495872 TGTAAGTTACCCATTGTGACTAGTCT 59.504 38.462 23.01 0.19 42.51 3.24
853 1207 5.407407 AGTTACCCATTGTGACTAGTCTG 57.593 43.478 23.01 12.82 41.61 3.51
854 1208 4.223032 AGTTACCCATTGTGACTAGTCTGG 59.777 45.833 23.01 20.16 41.61 3.86
855 1209 2.902608 ACCCATTGTGACTAGTCTGGA 58.097 47.619 23.77 11.37 0.00 3.86
856 1210 2.834549 ACCCATTGTGACTAGTCTGGAG 59.165 50.000 23.77 17.38 0.00 3.86
857 1211 2.834549 CCCATTGTGACTAGTCTGGAGT 59.165 50.000 23.77 6.52 0.00 3.85
858 1212 3.261897 CCCATTGTGACTAGTCTGGAGTT 59.738 47.826 23.77 4.65 0.00 3.01
859 1213 4.263068 CCCATTGTGACTAGTCTGGAGTTT 60.263 45.833 23.77 3.32 0.00 2.66
860 1214 4.932200 CCATTGTGACTAGTCTGGAGTTTC 59.068 45.833 23.01 5.12 0.00 2.78
861 1215 4.602340 TTGTGACTAGTCTGGAGTTTCC 57.398 45.455 23.01 0.00 36.96 3.13
862 1216 3.845860 TGTGACTAGTCTGGAGTTTCCT 58.154 45.455 23.01 0.00 37.46 3.36
863 1217 3.574396 TGTGACTAGTCTGGAGTTTCCTG 59.426 47.826 23.01 0.00 37.46 3.86
864 1218 2.563179 TGACTAGTCTGGAGTTTCCTGC 59.437 50.000 23.01 0.00 37.46 4.85
865 1219 1.903183 ACTAGTCTGGAGTTTCCTGCC 59.097 52.381 0.00 0.00 37.46 4.85
866 1220 1.902508 CTAGTCTGGAGTTTCCTGCCA 59.097 52.381 0.00 0.00 37.46 4.92
867 1221 0.398318 AGTCTGGAGTTTCCTGCCAC 59.602 55.000 0.00 0.00 37.46 5.01
868 1222 0.108585 GTCTGGAGTTTCCTGCCACA 59.891 55.000 0.00 0.00 37.46 4.17
869 1223 0.397941 TCTGGAGTTTCCTGCCACAG 59.602 55.000 0.00 0.00 37.46 3.66
870 1224 0.397941 CTGGAGTTTCCTGCCACAGA 59.602 55.000 0.00 0.00 37.46 3.41
871 1225 0.397941 TGGAGTTTCCTGCCACAGAG 59.602 55.000 0.00 0.00 37.46 3.35
872 1226 0.322008 GGAGTTTCCTGCCACAGAGG 60.322 60.000 0.00 0.00 35.15 3.69
873 1227 0.322008 GAGTTTCCTGCCACAGAGGG 60.322 60.000 0.00 0.00 38.09 4.30
881 1235 3.708210 CCACAGAGGGCTACCGAA 58.292 61.111 0.00 0.00 43.47 4.30
882 1236 1.218316 CCACAGAGGGCTACCGAAC 59.782 63.158 0.00 0.00 43.47 3.95
883 1237 1.541310 CCACAGAGGGCTACCGAACA 61.541 60.000 0.00 0.00 43.47 3.18
899 1253 0.884704 AACACGCCATCGCTCAACTT 60.885 50.000 0.00 0.00 39.84 2.66
958 1312 1.073098 CTAAACCCACAACCCCCTCT 58.927 55.000 0.00 0.00 0.00 3.69
959 1313 1.004394 CTAAACCCACAACCCCCTCTC 59.996 57.143 0.00 0.00 0.00 3.20
963 1317 2.046892 CACAACCCCCTCTCGCAG 60.047 66.667 0.00 0.00 0.00 5.18
1211 1565 1.928706 GCCAAATTCGGTAAGCGCCA 61.929 55.000 2.29 0.00 0.00 5.69
1215 1569 1.024579 AATTCGGTAAGCGCCACCAG 61.025 55.000 24.02 17.42 35.67 4.00
1325 1715 1.489481 TCAGTGGATCAATCGGAGCT 58.511 50.000 0.00 0.00 30.93 4.09
1344 1734 5.298777 GGAGCTCAGCTGATAAATTTGACAT 59.701 40.000 18.63 0.00 39.88 3.06
1409 1799 4.348486 AGAGAGAAGCATGGAGTTCACTA 58.652 43.478 0.00 0.00 0.00 2.74
1420 1810 3.006728 TTCACTAGGCACCCCCGG 61.007 66.667 0.00 0.00 39.21 5.73
1502 1892 1.676615 CCAACATTGCCATTTCAGCCC 60.677 52.381 0.00 0.00 0.00 5.19
1581 1971 3.626924 AAGTTCGACGGCCTGGCT 61.627 61.111 19.68 0.00 0.00 4.75
1647 2037 1.527034 TCGTGTACTGTACCTCGCTT 58.473 50.000 14.91 0.00 0.00 4.68
1654 2044 0.245539 CTGTACCTCGCTTTCCGGAA 59.754 55.000 14.35 14.35 37.59 4.30
1692 2082 2.306805 TGATCACATGAAGCAGGAAGGT 59.693 45.455 0.00 0.00 0.00 3.50
1693 2083 2.189594 TCACATGAAGCAGGAAGGTG 57.810 50.000 0.00 0.00 0.00 4.00
1694 2084 1.699083 TCACATGAAGCAGGAAGGTGA 59.301 47.619 0.00 0.00 0.00 4.02
1706 2096 4.214332 GCAGGAAGGTGAGTTTAGTTCTTG 59.786 45.833 0.00 0.00 0.00 3.02
1707 2097 5.611374 CAGGAAGGTGAGTTTAGTTCTTGA 58.389 41.667 0.00 0.00 0.00 3.02
1708 2098 6.055588 CAGGAAGGTGAGTTTAGTTCTTGAA 58.944 40.000 0.00 0.00 0.00 2.69
1709 2099 6.203723 CAGGAAGGTGAGTTTAGTTCTTGAAG 59.796 42.308 0.00 0.00 0.00 3.02
1712 2102 5.990668 AGGTGAGTTTAGTTCTTGAAGTGT 58.009 37.500 1.32 0.00 0.00 3.55
1714 2104 6.884836 AGGTGAGTTTAGTTCTTGAAGTGTTT 59.115 34.615 1.32 0.00 0.00 2.83
1716 2106 6.469275 GTGAGTTTAGTTCTTGAAGTGTTTGC 59.531 38.462 1.32 0.00 0.00 3.68
1720 2110 1.846175 GTTCTTGAAGTGTTTGCGTGC 59.154 47.619 0.00 0.00 0.00 5.34
1722 2112 1.531522 CTTGAAGTGTTTGCGTGCGC 61.532 55.000 9.85 9.85 42.35 6.09
1729 2120 2.127421 TTTGCGTGCGCGATGTTC 60.127 55.556 26.19 5.46 45.51 3.18
1732 2123 3.478394 GCGTGCGCGATGTTCTGA 61.478 61.111 26.19 0.00 41.33 3.27
1734 2125 1.225475 CGTGCGCGATGTTCTGAAC 60.225 57.895 16.08 13.49 41.33 3.18
1735 2126 1.132640 GTGCGCGATGTTCTGAACC 59.867 57.895 12.10 2.71 0.00 3.62
1747 2138 0.894835 TCTGAACCTCGCTGCATACA 59.105 50.000 0.00 0.00 0.00 2.29
1749 2140 2.093500 TCTGAACCTCGCTGCATACATT 60.093 45.455 0.00 0.00 0.00 2.71
1752 2143 1.656652 ACCTCGCTGCATACATTGAC 58.343 50.000 0.00 0.00 0.00 3.18
1860 2251 4.890158 TGCTACTCAAGAAACTGGATGA 57.110 40.909 0.00 0.00 0.00 2.92
1871 2262 1.238439 ACTGGATGACGTTGGCTTTG 58.762 50.000 0.00 0.00 0.00 2.77
1977 2368 0.462581 TCCATTCAGCTGACCGATGC 60.463 55.000 18.03 0.00 0.00 3.91
1978 2369 1.442526 CCATTCAGCTGACCGATGCC 61.443 60.000 18.03 0.00 0.00 4.40
1999 2390 1.466856 GCATTCTGGTTGGAGCATCA 58.533 50.000 0.00 0.00 36.25 3.07
2053 2444 2.856222 CTTCACTGTGGCCTTCTTCTT 58.144 47.619 3.32 0.00 0.00 2.52
2233 2624 1.135199 CCTGATGCAATTGGTGTGCTC 60.135 52.381 7.72 0.00 42.69 4.26
2299 2690 9.098355 GTATATCAAATTAGCAGACTGTTGTGA 57.902 33.333 3.99 2.40 0.00 3.58
2302 2693 6.521162 TCAAATTAGCAGACTGTTGTGAGTA 58.479 36.000 3.99 0.00 0.00 2.59
2311 2702 2.371841 ACTGTTGTGAGTAAGATGCCCA 59.628 45.455 0.00 0.00 0.00 5.36
2426 2817 5.362430 TGTTTGAGGATTTTAGTGCAAAGGT 59.638 36.000 0.00 0.00 0.00 3.50
2427 2818 5.452078 TTGAGGATTTTAGTGCAAAGGTG 57.548 39.130 0.00 0.00 0.00 4.00
2428 2819 4.724399 TGAGGATTTTAGTGCAAAGGTGA 58.276 39.130 0.00 0.00 0.00 4.02
2429 2820 5.324409 TGAGGATTTTAGTGCAAAGGTGAT 58.676 37.500 0.00 0.00 0.00 3.06
2430 2821 5.774690 TGAGGATTTTAGTGCAAAGGTGATT 59.225 36.000 0.00 0.00 0.00 2.57
2431 2822 6.267471 TGAGGATTTTAGTGCAAAGGTGATTT 59.733 34.615 0.00 0.00 0.00 2.17
2432 2823 6.691508 AGGATTTTAGTGCAAAGGTGATTTC 58.308 36.000 0.00 0.00 0.00 2.17
2433 2824 6.267471 AGGATTTTAGTGCAAAGGTGATTTCA 59.733 34.615 0.00 0.00 0.00 2.69
2434 2825 6.587608 GGATTTTAGTGCAAAGGTGATTTCAG 59.412 38.462 0.00 0.00 0.00 3.02
2435 2826 6.463995 TTTTAGTGCAAAGGTGATTTCAGT 57.536 33.333 0.00 0.00 0.00 3.41
2538 3023 2.766263 CCCAGTCTGTATAGCCTTGTCA 59.234 50.000 0.00 0.00 0.00 3.58
2611 3096 8.837389 GTCCTTACAGTTCTGAAATACTTGTTT 58.163 33.333 6.83 0.00 0.00 2.83
2647 3132 5.065218 AGTCTGCAGAGTAAATTTTATGCCG 59.935 40.000 22.69 1.90 32.77 5.69
2921 3406 9.480053 AAATTTGATACTGCAATATTACCATGC 57.520 29.630 0.00 0.00 40.45 4.06
2925 3410 6.997476 TGATACTGCAATATTACCATGCTGAA 59.003 34.615 10.20 0.00 40.24 3.02
2929 3414 4.273235 TGCAATATTACCATGCTGAACTCG 59.727 41.667 0.00 0.00 40.66 4.18
3115 3600 3.003480 AGCGCAAACCTGTTAGATTCTC 58.997 45.455 11.47 0.00 0.00 2.87
3214 3700 4.161377 ACAGGTTGCCATTTTTAACACAGT 59.839 37.500 0.00 0.00 0.00 3.55
3336 3822 3.164268 AGGGCTGTGCACAATTTATTGA 58.836 40.909 21.98 0.00 40.14 2.57
3531 4019 5.359860 GGAAGGATTATTTTCCATTGGTCGT 59.640 40.000 1.86 0.00 41.97 4.34
3668 4156 2.572104 AGGATCTTGGCTTTCGGTTAGT 59.428 45.455 0.00 0.00 0.00 2.24
3672 4160 2.897969 TCTTGGCTTTCGGTTAGTCTCT 59.102 45.455 0.00 0.00 0.00 3.10
3673 4161 2.743636 TGGCTTTCGGTTAGTCTCTG 57.256 50.000 0.00 0.00 0.00 3.35
3696 4184 8.559536 TCTGTACTGTGAATGATTCTTCAAAAC 58.440 33.333 6.73 7.28 36.92 2.43
3738 4226 7.272037 TCCTTTTGAGTTTACTTGATGGAAC 57.728 36.000 0.00 0.00 0.00 3.62
3753 4241 3.313012 TGGAACAACATGAGTAGACCG 57.687 47.619 0.00 0.00 31.92 4.79
3755 4243 2.000447 GAACAACATGAGTAGACCGCC 59.000 52.381 0.00 0.00 0.00 6.13
3758 4246 0.824759 AACATGAGTAGACCGCCTCC 59.175 55.000 0.00 0.00 0.00 4.30
3773 4261 2.351835 CGCCTCCGGAGACAATACTATG 60.352 54.545 33.39 12.63 0.00 2.23
3803 4301 4.082571 CCAAATAGGCAAGTTTCTGACCTG 60.083 45.833 0.00 0.00 31.79 4.00
3829 4329 3.407424 ACTGTGCACTTTCAGCTATGA 57.593 42.857 19.41 0.00 35.37 2.15
3863 4363 2.551459 AGTTGCTGAAGATTGTGCTGAC 59.449 45.455 0.00 0.00 0.00 3.51
3882 4382 4.713553 TGACACCACTTATCAAGCAGAAA 58.286 39.130 0.00 0.00 0.00 2.52
3886 4386 5.359576 ACACCACTTATCAAGCAGAAAAACA 59.640 36.000 0.00 0.00 0.00 2.83
3923 4423 3.300388 GTCATCAGGAGAGTACATCCCA 58.700 50.000 12.26 2.21 37.57 4.37
3937 4437 1.952296 CATCCCATCTGCTAAGGTTGC 59.048 52.381 0.00 0.00 0.00 4.17
4002 4502 0.395312 TGAGGTTCGACCCTTTGACC 59.605 55.000 1.82 0.00 39.75 4.02
4007 4507 1.558294 GTTCGACCCTTTGACCCCTAT 59.442 52.381 0.00 0.00 0.00 2.57
4008 4508 2.767960 GTTCGACCCTTTGACCCCTATA 59.232 50.000 0.00 0.00 0.00 1.31
4009 4509 3.119009 TCGACCCTTTGACCCCTATAA 57.881 47.619 0.00 0.00 0.00 0.98
4010 4510 3.660959 TCGACCCTTTGACCCCTATAAT 58.339 45.455 0.00 0.00 0.00 1.28
4011 4511 4.042174 TCGACCCTTTGACCCCTATAATT 58.958 43.478 0.00 0.00 0.00 1.40
4012 4512 4.134563 CGACCCTTTGACCCCTATAATTG 58.865 47.826 0.00 0.00 0.00 2.32
4013 4513 4.470602 GACCCTTTGACCCCTATAATTGG 58.529 47.826 0.00 0.00 0.00 3.16
4014 4514 3.862309 ACCCTTTGACCCCTATAATTGGT 59.138 43.478 0.00 0.00 34.33 3.67
4051 4552 4.378046 GCCGTTCATGTACCTTTGTGTAAG 60.378 45.833 0.00 0.00 0.00 2.34
4057 4558 1.802365 GTACCTTTGTGTAAGCCGTGG 59.198 52.381 0.00 0.00 32.19 4.94
4069 4570 2.047274 CCGTGGGCGTGATGACTT 60.047 61.111 0.00 0.00 36.15 3.01
4080 4581 2.353704 CGTGATGACTTCTTACAGGGCA 60.354 50.000 0.00 0.00 0.00 5.36
4116 4617 4.966805 TGGACCTAGTAAGTGGGGATAAAG 59.033 45.833 0.00 0.00 0.00 1.85
4133 4634 8.749354 GGGGATAAAGTTGAGTTTGTTATCATT 58.251 33.333 0.00 0.00 34.34 2.57
4168 4669 3.393089 AGAGTCATATAAGCTTGCCCG 57.607 47.619 9.86 0.00 0.00 6.13
4172 4673 1.074951 ATATAAGCTTGCCCGGGCC 59.925 57.895 41.75 26.88 41.09 5.80
4178 4679 4.504596 CTTGCCCGGGCCATGCTA 62.505 66.667 41.75 20.80 41.09 3.49
4185 4686 0.400213 CCGGGCCATGCTAAGGATAA 59.600 55.000 4.39 0.00 0.00 1.75
4200 4701 6.926272 GCTAAGGATAACAGATGAATTCGAGT 59.074 38.462 0.04 0.00 0.00 4.18
4217 4718 3.188460 TCGAGTTATCAGCCAAAGTTTGC 59.812 43.478 10.25 6.06 0.00 3.68
4239 4740 0.599558 CATGTGGCCACAAGGTTCAG 59.400 55.000 40.48 20.06 45.41 3.02
4243 4744 2.283173 GCCACAAGGTTCAGGGGG 60.283 66.667 0.00 0.00 37.19 5.40
4246 4747 2.852075 ACAAGGTTCAGGGGGCGA 60.852 61.111 0.00 0.00 0.00 5.54
4252 4753 4.332543 TTCAGGGGGCGAGGGAGT 62.333 66.667 0.00 0.00 0.00 3.85
4265 4766 0.622665 AGGGAGTGAAAGGGAGCATG 59.377 55.000 0.00 0.00 0.00 4.06
4268 4769 1.680249 GGAGTGAAAGGGAGCATGTCC 60.680 57.143 5.94 5.94 46.10 4.02
4277 4778 3.382803 GAGCATGTCCGAGCTGGCT 62.383 63.158 0.00 0.00 42.04 4.75
4320 4821 1.843851 TCGAGGAAATACCAAGGGCAT 59.156 47.619 0.00 0.00 42.04 4.40
4324 4825 1.683385 GGAAATACCAAGGGCATCTGC 59.317 52.381 0.00 0.00 38.79 4.26
4355 4859 1.555075 TGGGAGATGTGTCAGGTAAGC 59.445 52.381 0.00 0.00 0.00 3.09
4358 4862 3.370953 GGGAGATGTGTCAGGTAAGCAAT 60.371 47.826 0.00 0.00 0.00 3.56
4415 4919 2.373169 AGCATGGAGAACAGAACCTGAA 59.627 45.455 0.45 0.00 35.18 3.02
4417 4921 3.057946 GCATGGAGAACAGAACCTGAAAC 60.058 47.826 0.45 0.00 35.18 2.78
4434 4938 4.183865 TGAAACGGTGAGAGATGCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
4512 5016 8.385491 TGTAAGAATGCCCAGATATACATTCAT 58.615 33.333 14.81 7.27 46.90 2.57
4528 5032 5.630121 ACATTCATTAACTGACTGGGTTCA 58.370 37.500 8.80 0.00 38.51 3.18
4550 5062 4.931661 AGTGTCAAACTTAGAACCTCGA 57.068 40.909 0.00 0.00 34.57 4.04
4922 5436 3.071023 CCGAGCCATCCCTATCTAAACAA 59.929 47.826 0.00 0.00 0.00 2.83
4946 5460 5.178809 AGCGTAAAGAACAAAATTAGCGAGT 59.821 36.000 0.00 0.00 0.00 4.18
4987 5501 3.084786 GCCACTTTCTAGCTTTCACCAT 58.915 45.455 0.00 0.00 0.00 3.55
5051 5566 5.237815 TGAGAACATCACCTGAACATACAC 58.762 41.667 0.00 0.00 31.12 2.90
5112 5627 2.984562 ACGGCACATCATTACACATCA 58.015 42.857 0.00 0.00 0.00 3.07
5168 5683 3.509575 GCTTCTTCTTCTCAGGTCTCTGA 59.490 47.826 0.00 0.00 46.81 3.27
5208 5724 1.301244 ACCTTGAGACACAGCAGCG 60.301 57.895 0.00 0.00 0.00 5.18
5239 5755 6.187125 ACACTTGTCACTGCAATGATAATC 57.813 37.500 7.80 0.00 30.44 1.75
5309 5825 0.597568 CGAGCAAATTTGAGTGGGCA 59.402 50.000 22.31 0.00 0.00 5.36
5319 5835 7.575365 CAAATTTGAGTGGGCAATAAGTTTTC 58.425 34.615 13.08 0.00 0.00 2.29
5335 5851 4.759782 AGTTTTCTGGTACGATCATGGAG 58.240 43.478 0.00 0.00 0.00 3.86
5377 5894 1.897225 AATGAGCTCAGCTGGCGACT 61.897 55.000 22.96 6.14 39.88 4.18
5381 5898 3.699894 CTCAGCTGGCGACTGGGT 61.700 66.667 15.13 0.00 35.78 4.51
5424 5941 1.529438 CGCTTTCGAACTGCCAAACTA 59.471 47.619 14.30 0.00 38.10 2.24
5453 5970 9.093458 ACTAAAAATGGAGAATGAAAAGGACAT 57.907 29.630 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.362706 TGGATATGATAGGCTACGGTCC 58.637 50.000 0.00 1.58 0.00 4.46
1 2 5.278561 GCTATGGATATGATAGGCTACGGTC 60.279 48.000 0.00 0.00 0.00 4.79
20 21 5.746245 GCAACTAGTTCTACTGTCTGCTATG 59.254 44.000 4.77 0.00 0.00 2.23
85 86 1.689813 TCCTGCCACAGTTTCTCGTAA 59.310 47.619 0.00 0.00 0.00 3.18
143 144 5.220378 CGACTACTGACTAACTCCTTCGTAC 60.220 48.000 0.00 0.00 0.00 3.67
144 145 4.867047 CGACTACTGACTAACTCCTTCGTA 59.133 45.833 0.00 0.00 0.00 3.43
145 146 3.683822 CGACTACTGACTAACTCCTTCGT 59.316 47.826 0.00 0.00 0.00 3.85
146 147 3.485546 GCGACTACTGACTAACTCCTTCG 60.486 52.174 0.00 0.00 0.00 3.79
155 254 1.007580 CTCTGCGCGACTACTGACTA 58.992 55.000 12.10 0.00 0.00 2.59
188 287 2.544844 ACGGGAGAAGGGTGATAAGA 57.455 50.000 0.00 0.00 0.00 2.10
233 332 2.043248 TCGGGACAGTAGGCCTCC 60.043 66.667 9.68 3.29 0.00 4.30
262 361 4.467084 TCATCCCGGCTTGCGACC 62.467 66.667 0.00 0.00 0.00 4.79
263 362 2.892425 CTCATCCCGGCTTGCGAC 60.892 66.667 0.00 0.00 0.00 5.19
272 371 0.179089 CTGCTGTCTTCCTCATCCCG 60.179 60.000 0.00 0.00 0.00 5.14
369 723 1.660355 GGATATCCACGCTCGCTCA 59.340 57.895 17.34 0.00 35.64 4.26
375 729 1.794714 ACAAGAGGGATATCCACGCT 58.205 50.000 23.27 15.58 38.24 5.07
401 755 3.299340 TCTTTCTCCACTTGTACGAGC 57.701 47.619 10.23 0.00 0.00 5.03
415 769 6.816616 CTCCTTATAAGGGAGGTTCTTTCT 57.183 41.667 27.65 0.00 46.47 2.52
445 799 3.016736 CACATTGCTAGTTTAGTGGGGG 58.983 50.000 0.00 0.00 0.00 5.40
446 800 3.016736 CCACATTGCTAGTTTAGTGGGG 58.983 50.000 14.75 6.10 42.04 4.96
448 802 3.689649 GTCCCACATTGCTAGTTTAGTGG 59.310 47.826 15.30 15.30 44.58 4.00
493 847 3.068590 CCACTTAGCCCATTTATGCAAGG 59.931 47.826 0.00 0.00 0.00 3.61
500 854 4.668138 AAAGACCCACTTAGCCCATTTA 57.332 40.909 0.00 0.00 37.93 1.40
557 911 6.498651 TGGAATTTTGTCTATTTTGGGCCTAA 59.501 34.615 4.53 0.00 0.00 2.69
581 935 6.852853 CCTAAAAATGTGCGATATTACTGCTG 59.147 38.462 0.00 0.00 0.00 4.41
594 948 3.896122 TCTGTTTCGCCTAAAAATGTGC 58.104 40.909 0.00 0.00 0.00 4.57
595 949 5.698832 TCATCTGTTTCGCCTAAAAATGTG 58.301 37.500 0.00 0.00 0.00 3.21
596 950 5.106157 CCTCATCTGTTTCGCCTAAAAATGT 60.106 40.000 0.00 0.00 0.00 2.71
597 951 5.106157 ACCTCATCTGTTTCGCCTAAAAATG 60.106 40.000 0.00 0.00 0.00 2.32
598 952 5.010282 ACCTCATCTGTTTCGCCTAAAAAT 58.990 37.500 0.00 0.00 0.00 1.82
599 953 4.215399 CACCTCATCTGTTTCGCCTAAAAA 59.785 41.667 0.00 0.00 0.00 1.94
600 954 3.751175 CACCTCATCTGTTTCGCCTAAAA 59.249 43.478 0.00 0.00 0.00 1.52
601 955 3.334691 CACCTCATCTGTTTCGCCTAAA 58.665 45.455 0.00 0.00 0.00 1.85
602 956 2.354704 CCACCTCATCTGTTTCGCCTAA 60.355 50.000 0.00 0.00 0.00 2.69
603 957 1.207089 CCACCTCATCTGTTTCGCCTA 59.793 52.381 0.00 0.00 0.00 3.93
604 958 0.036010 CCACCTCATCTGTTTCGCCT 60.036 55.000 0.00 0.00 0.00 5.52
605 959 1.648467 GCCACCTCATCTGTTTCGCC 61.648 60.000 0.00 0.00 0.00 5.54
606 960 1.796796 GCCACCTCATCTGTTTCGC 59.203 57.895 0.00 0.00 0.00 4.70
607 961 0.389817 TCGCCACCTCATCTGTTTCG 60.390 55.000 0.00 0.00 0.00 3.46
608 962 1.338200 ACTCGCCACCTCATCTGTTTC 60.338 52.381 0.00 0.00 0.00 2.78
609 963 0.687354 ACTCGCCACCTCATCTGTTT 59.313 50.000 0.00 0.00 0.00 2.83
610 964 1.557099 TACTCGCCACCTCATCTGTT 58.443 50.000 0.00 0.00 0.00 3.16
611 965 1.557099 TTACTCGCCACCTCATCTGT 58.443 50.000 0.00 0.00 0.00 3.41
612 966 2.898729 ATTACTCGCCACCTCATCTG 57.101 50.000 0.00 0.00 0.00 2.90
613 967 5.552870 ATTAATTACTCGCCACCTCATCT 57.447 39.130 0.00 0.00 0.00 2.90
614 968 6.369065 CCTTATTAATTACTCGCCACCTCATC 59.631 42.308 0.00 0.00 0.00 2.92
615 969 6.042781 TCCTTATTAATTACTCGCCACCTCAT 59.957 38.462 0.00 0.00 0.00 2.90
616 970 5.364446 TCCTTATTAATTACTCGCCACCTCA 59.636 40.000 0.00 0.00 0.00 3.86
617 971 5.850614 TCCTTATTAATTACTCGCCACCTC 58.149 41.667 0.00 0.00 0.00 3.85
618 972 5.881923 TCCTTATTAATTACTCGCCACCT 57.118 39.130 0.00 0.00 0.00 4.00
619 973 6.764560 TCTTTCCTTATTAATTACTCGCCACC 59.235 38.462 0.00 0.00 0.00 4.61
620 974 7.041984 CCTCTTTCCTTATTAATTACTCGCCAC 60.042 40.741 0.00 0.00 0.00 5.01
621 975 6.990349 CCTCTTTCCTTATTAATTACTCGCCA 59.010 38.462 0.00 0.00 0.00 5.69
622 976 6.427242 CCCTCTTTCCTTATTAATTACTCGCC 59.573 42.308 0.00 0.00 0.00 5.54
623 977 7.171167 GTCCCTCTTTCCTTATTAATTACTCGC 59.829 40.741 0.00 0.00 0.00 5.03
624 978 8.202137 TGTCCCTCTTTCCTTATTAATTACTCG 58.798 37.037 0.00 0.00 0.00 4.18
626 980 9.853177 CATGTCCCTCTTTCCTTATTAATTACT 57.147 33.333 0.00 0.00 0.00 2.24
627 981 9.628500 ACATGTCCCTCTTTCCTTATTAATTAC 57.372 33.333 0.00 0.00 0.00 1.89
628 982 9.627123 CACATGTCCCTCTTTCCTTATTAATTA 57.373 33.333 0.00 0.00 0.00 1.40
629 983 7.068716 GCACATGTCCCTCTTTCCTTATTAATT 59.931 37.037 0.00 0.00 0.00 1.40
630 984 6.547510 GCACATGTCCCTCTTTCCTTATTAAT 59.452 38.462 0.00 0.00 0.00 1.40
631 985 5.885912 GCACATGTCCCTCTTTCCTTATTAA 59.114 40.000 0.00 0.00 0.00 1.40
632 986 5.191722 AGCACATGTCCCTCTTTCCTTATTA 59.808 40.000 0.00 0.00 0.00 0.98
633 987 4.018050 AGCACATGTCCCTCTTTCCTTATT 60.018 41.667 0.00 0.00 0.00 1.40
634 988 3.525199 AGCACATGTCCCTCTTTCCTTAT 59.475 43.478 0.00 0.00 0.00 1.73
635 989 2.912956 AGCACATGTCCCTCTTTCCTTA 59.087 45.455 0.00 0.00 0.00 2.69
636 990 1.707427 AGCACATGTCCCTCTTTCCTT 59.293 47.619 0.00 0.00 0.00 3.36
637 991 1.366319 AGCACATGTCCCTCTTTCCT 58.634 50.000 0.00 0.00 0.00 3.36
638 992 3.010420 GTTAGCACATGTCCCTCTTTCC 58.990 50.000 0.00 0.00 0.00 3.13
639 993 3.674997 TGTTAGCACATGTCCCTCTTTC 58.325 45.455 0.00 0.00 0.00 2.62
640 994 3.788227 TGTTAGCACATGTCCCTCTTT 57.212 42.857 0.00 0.00 0.00 2.52
641 995 5.045578 AGTTATGTTAGCACATGTCCCTCTT 60.046 40.000 0.00 0.00 43.92 2.85
642 996 4.471386 AGTTATGTTAGCACATGTCCCTCT 59.529 41.667 0.00 0.00 43.92 3.69
643 997 4.770795 AGTTATGTTAGCACATGTCCCTC 58.229 43.478 0.00 0.00 43.92 4.30
644 998 4.844349 AGTTATGTTAGCACATGTCCCT 57.156 40.909 0.00 0.00 43.92 4.20
645 999 5.671493 ACTAGTTATGTTAGCACATGTCCC 58.329 41.667 0.00 0.00 43.92 4.46
646 1000 8.888579 ATAACTAGTTATGTTAGCACATGTCC 57.111 34.615 24.17 0.00 43.92 4.02
648 1002 9.667107 ACAATAACTAGTTATGTTAGCACATGT 57.333 29.630 25.21 18.88 43.92 3.21
672 1026 9.936759 TCTTGTCTTGATATGTGTAATGTTACA 57.063 29.630 1.62 1.62 41.06 2.41
675 1029 9.671279 TCATCTTGTCTTGATATGTGTAATGTT 57.329 29.630 0.00 0.00 0.00 2.71
676 1030 9.322773 CTCATCTTGTCTTGATATGTGTAATGT 57.677 33.333 0.00 0.00 0.00 2.71
677 1031 9.322773 ACTCATCTTGTCTTGATATGTGTAATG 57.677 33.333 0.00 0.00 0.00 1.90
678 1032 9.539825 GACTCATCTTGTCTTGATATGTGTAAT 57.460 33.333 0.00 0.00 0.00 1.89
679 1033 8.753133 AGACTCATCTTGTCTTGATATGTGTAA 58.247 33.333 0.00 0.00 41.45 2.41
680 1034 8.298729 AGACTCATCTTGTCTTGATATGTGTA 57.701 34.615 0.00 0.00 41.45 2.90
681 1035 7.180322 AGACTCATCTTGTCTTGATATGTGT 57.820 36.000 0.00 0.00 41.45 3.72
682 1036 8.193438 TGTAGACTCATCTTGTCTTGATATGTG 58.807 37.037 1.67 0.00 41.45 3.21
683 1037 8.298729 TGTAGACTCATCTTGTCTTGATATGT 57.701 34.615 1.67 0.00 41.45 2.29
684 1038 9.029243 GTTGTAGACTCATCTTGTCTTGATATG 57.971 37.037 1.67 0.00 41.45 1.78
685 1039 8.200792 GGTTGTAGACTCATCTTGTCTTGATAT 58.799 37.037 1.67 0.00 41.45 1.63
686 1040 7.397476 AGGTTGTAGACTCATCTTGTCTTGATA 59.603 37.037 1.67 0.00 41.45 2.15
687 1041 6.212388 AGGTTGTAGACTCATCTTGTCTTGAT 59.788 38.462 1.67 0.00 41.45 2.57
688 1042 5.540337 AGGTTGTAGACTCATCTTGTCTTGA 59.460 40.000 1.67 0.00 41.45 3.02
689 1043 5.788450 AGGTTGTAGACTCATCTTGTCTTG 58.212 41.667 1.67 0.00 41.45 3.02
690 1044 7.540474 TTAGGTTGTAGACTCATCTTGTCTT 57.460 36.000 1.67 0.00 41.45 3.01
691 1045 7.726033 ATTAGGTTGTAGACTCATCTTGTCT 57.274 36.000 0.00 0.00 45.48 3.41
692 1046 9.871238 TTTATTAGGTTGTAGACTCATCTTGTC 57.129 33.333 0.00 0.00 36.29 3.18
716 1070 9.656040 TGTACGGTGTCATATAACACTTTATTT 57.344 29.630 9.04 0.00 46.96 1.40
717 1071 9.826574 ATGTACGGTGTCATATAACACTTTATT 57.173 29.630 9.04 0.00 46.96 1.40
720 1074 9.256477 CATATGTACGGTGTCATATAACACTTT 57.744 33.333 9.04 0.00 46.96 2.66
721 1075 8.418662 ACATATGTACGGTGTCATATAACACTT 58.581 33.333 6.56 0.00 46.96 3.16
722 1076 7.948357 ACATATGTACGGTGTCATATAACACT 58.052 34.615 6.56 0.00 46.96 3.55
724 1078 9.681692 GTAACATATGTACGGTGTCATATAACA 57.318 33.333 9.21 0.90 36.07 2.41
725 1079 9.903682 AGTAACATATGTACGGTGTCATATAAC 57.096 33.333 9.21 13.71 36.07 1.89
727 1081 8.733458 GGAGTAACATATGTACGGTGTCATATA 58.267 37.037 9.21 0.00 36.07 0.86
728 1082 7.450634 AGGAGTAACATATGTACGGTGTCATAT 59.549 37.037 9.21 11.89 37.62 1.78
729 1083 6.774170 AGGAGTAACATATGTACGGTGTCATA 59.226 38.462 9.21 9.18 0.00 2.15
730 1084 5.597182 AGGAGTAACATATGTACGGTGTCAT 59.403 40.000 9.21 0.00 0.00 3.06
731 1085 4.951715 AGGAGTAACATATGTACGGTGTCA 59.048 41.667 9.21 0.00 0.00 3.58
732 1086 5.066893 TGAGGAGTAACATATGTACGGTGTC 59.933 44.000 9.21 3.78 0.00 3.67
733 1087 4.951715 TGAGGAGTAACATATGTACGGTGT 59.048 41.667 9.21 0.00 0.00 4.16
734 1088 5.067413 AGTGAGGAGTAACATATGTACGGTG 59.933 44.000 9.21 0.00 0.00 4.94
735 1089 5.198965 AGTGAGGAGTAACATATGTACGGT 58.801 41.667 9.21 0.00 0.00 4.83
736 1090 5.769484 AGTGAGGAGTAACATATGTACGG 57.231 43.478 9.21 0.00 0.00 4.02
737 1091 9.433153 TCTATAGTGAGGAGTAACATATGTACG 57.567 37.037 9.21 0.00 0.00 3.67
784 1138 9.991906 AAAAGTAACTTAGACTAGTAACATGCA 57.008 29.630 0.00 0.00 0.00 3.96
812 1166 9.546428 GGGTAACTTACACTAGTTTGTCTTAAA 57.454 33.333 0.00 0.00 39.08 1.52
813 1167 8.703743 TGGGTAACTTACACTAGTTTGTCTTAA 58.296 33.333 2.88 0.00 39.08 1.85
814 1168 8.248904 TGGGTAACTTACACTAGTTTGTCTTA 57.751 34.615 2.88 0.00 39.08 2.10
815 1169 7.128234 TGGGTAACTTACACTAGTTTGTCTT 57.872 36.000 2.88 0.00 39.08 3.01
816 1170 6.736110 TGGGTAACTTACACTAGTTTGTCT 57.264 37.500 2.88 0.00 39.08 3.41
817 1171 7.443272 ACAATGGGTAACTTACACTAGTTTGTC 59.557 37.037 2.88 0.00 39.08 3.18
818 1172 7.227910 CACAATGGGTAACTTACACTAGTTTGT 59.772 37.037 2.88 5.16 39.08 2.83
819 1173 7.442969 TCACAATGGGTAACTTACACTAGTTTG 59.557 37.037 2.88 4.65 39.08 2.93
820 1174 7.443272 GTCACAATGGGTAACTTACACTAGTTT 59.557 37.037 2.88 0.00 39.08 2.66
821 1175 6.932960 GTCACAATGGGTAACTTACACTAGTT 59.067 38.462 2.88 0.00 41.13 2.24
822 1176 6.269307 AGTCACAATGGGTAACTTACACTAGT 59.731 38.462 2.88 0.00 31.94 2.57
823 1177 6.698380 AGTCACAATGGGTAACTTACACTAG 58.302 40.000 2.88 0.00 31.94 2.57
824 1178 6.675413 AGTCACAATGGGTAACTTACACTA 57.325 37.500 2.88 0.00 31.94 2.74
825 1179 5.562298 AGTCACAATGGGTAACTTACACT 57.438 39.130 2.88 0.00 31.94 3.55
826 1180 6.461640 ACTAGTCACAATGGGTAACTTACAC 58.538 40.000 1.40 0.00 0.00 2.90
827 1181 6.495872 AGACTAGTCACAATGGGTAACTTACA 59.504 38.462 24.44 0.00 0.00 2.41
828 1182 6.812160 CAGACTAGTCACAATGGGTAACTTAC 59.188 42.308 24.44 0.00 0.00 2.34
829 1183 6.070995 CCAGACTAGTCACAATGGGTAACTTA 60.071 42.308 24.44 0.00 0.00 2.24
830 1184 5.280011 CCAGACTAGTCACAATGGGTAACTT 60.280 44.000 24.44 0.00 0.00 2.66
831 1185 4.223032 CCAGACTAGTCACAATGGGTAACT 59.777 45.833 24.44 0.00 0.00 2.24
832 1186 4.222145 TCCAGACTAGTCACAATGGGTAAC 59.778 45.833 24.44 0.00 0.00 2.50
833 1187 4.422057 TCCAGACTAGTCACAATGGGTAA 58.578 43.478 24.44 5.34 0.00 2.85
834 1188 4.023980 CTCCAGACTAGTCACAATGGGTA 58.976 47.826 24.44 7.67 0.00 3.69
835 1189 2.834549 CTCCAGACTAGTCACAATGGGT 59.165 50.000 24.44 0.00 0.00 4.51
836 1190 2.834549 ACTCCAGACTAGTCACAATGGG 59.165 50.000 24.44 16.90 0.00 4.00
837 1191 4.543590 AACTCCAGACTAGTCACAATGG 57.456 45.455 24.44 21.12 0.00 3.16
838 1192 4.932200 GGAAACTCCAGACTAGTCACAATG 59.068 45.833 24.44 13.41 36.28 2.82
839 1193 4.841246 AGGAAACTCCAGACTAGTCACAAT 59.159 41.667 24.44 0.76 39.61 2.71
840 1194 4.039245 CAGGAAACTCCAGACTAGTCACAA 59.961 45.833 24.44 8.11 39.61 3.33
841 1195 3.574396 CAGGAAACTCCAGACTAGTCACA 59.426 47.826 24.44 6.93 39.61 3.58
842 1196 3.615351 GCAGGAAACTCCAGACTAGTCAC 60.615 52.174 24.44 0.00 39.61 3.67
843 1197 2.563179 GCAGGAAACTCCAGACTAGTCA 59.437 50.000 24.44 3.43 39.61 3.41
844 1198 2.093921 GGCAGGAAACTCCAGACTAGTC 60.094 54.545 15.41 15.41 39.61 2.59
845 1199 1.903183 GGCAGGAAACTCCAGACTAGT 59.097 52.381 0.00 0.00 39.61 2.57
846 1200 1.902508 TGGCAGGAAACTCCAGACTAG 59.097 52.381 0.00 0.00 39.61 2.57
847 1201 1.623811 GTGGCAGGAAACTCCAGACTA 59.376 52.381 0.00 0.00 39.61 2.59
848 1202 0.398318 GTGGCAGGAAACTCCAGACT 59.602 55.000 0.00 0.00 39.61 3.24
849 1203 0.108585 TGTGGCAGGAAACTCCAGAC 59.891 55.000 0.00 0.00 39.61 3.51
850 1204 0.397941 CTGTGGCAGGAAACTCCAGA 59.602 55.000 0.00 0.00 39.61 3.86
851 1205 0.397941 TCTGTGGCAGGAAACTCCAG 59.602 55.000 0.00 0.00 39.61 3.86
852 1206 0.397941 CTCTGTGGCAGGAAACTCCA 59.602 55.000 0.00 0.00 39.61 3.86
853 1207 0.322008 CCTCTGTGGCAGGAAACTCC 60.322 60.000 0.00 0.00 40.21 3.85
854 1208 0.322008 CCCTCTGTGGCAGGAAACTC 60.322 60.000 0.00 0.00 40.21 3.01
855 1209 1.763770 CCCTCTGTGGCAGGAAACT 59.236 57.895 0.00 0.00 46.44 2.66
856 1210 4.404691 CCCTCTGTGGCAGGAAAC 57.595 61.111 0.00 0.00 31.91 2.78
864 1218 1.218316 GTTCGGTAGCCCTCTGTGG 59.782 63.158 0.00 0.00 0.00 4.17
865 1219 0.389948 GTGTTCGGTAGCCCTCTGTG 60.390 60.000 0.00 0.00 0.00 3.66
866 1220 1.874345 CGTGTTCGGTAGCCCTCTGT 61.874 60.000 0.00 0.00 0.00 3.41
867 1221 1.153823 CGTGTTCGGTAGCCCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
868 1222 3.003113 GCGTGTTCGGTAGCCCTCT 62.003 63.158 0.00 0.00 37.56 3.69
869 1223 2.508663 GCGTGTTCGGTAGCCCTC 60.509 66.667 0.00 0.00 37.56 4.30
870 1224 4.078516 GGCGTGTTCGGTAGCCCT 62.079 66.667 0.00 0.00 43.54 5.19
873 1227 2.514013 CGATGGCGTGTTCGGTAGC 61.514 63.158 0.00 0.00 37.56 3.58
874 1228 2.514013 GCGATGGCGTGTTCGGTAG 61.514 63.158 0.00 0.00 40.36 3.18
875 1229 2.507547 GCGATGGCGTGTTCGGTA 60.508 61.111 0.00 0.00 40.36 4.02
876 1230 4.373116 AGCGATGGCGTGTTCGGT 62.373 61.111 0.00 2.70 46.35 4.69
877 1231 3.554692 GAGCGATGGCGTGTTCGG 61.555 66.667 0.00 0.00 46.35 4.30
878 1232 2.379634 TTGAGCGATGGCGTGTTCG 61.380 57.895 0.00 0.00 46.35 3.95
879 1233 1.132640 GTTGAGCGATGGCGTGTTC 59.867 57.895 0.00 0.00 46.35 3.18
880 1234 0.884704 AAGTTGAGCGATGGCGTGTT 60.885 50.000 0.00 0.00 46.35 3.32
881 1235 1.291877 GAAGTTGAGCGATGGCGTGT 61.292 55.000 0.00 0.00 46.35 4.49
882 1236 1.421485 GAAGTTGAGCGATGGCGTG 59.579 57.895 0.00 0.00 46.35 5.34
883 1237 1.741770 GGAAGTTGAGCGATGGCGT 60.742 57.895 0.00 0.00 46.35 5.68
899 1253 2.424842 AAAGCAGTTGGGCCGATGGA 62.425 55.000 0.00 0.00 0.00 3.41
1140 1494 4.832608 GCCCCGACGATGACCACC 62.833 72.222 0.00 0.00 0.00 4.61
1215 1569 4.292178 AGCATAGCTCGCGGAGGC 62.292 66.667 6.13 8.97 30.62 4.70
1255 1609 0.178975 ACAAACAAATCCTCGCCCCA 60.179 50.000 0.00 0.00 0.00 4.96
1286 1653 0.179000 ACATCTGATTGGGGCGACTC 59.821 55.000 0.00 0.00 0.00 3.36
1325 1715 7.144722 ACGAAATGTCAAATTTATCAGCTGA 57.855 32.000 20.79 20.79 0.00 4.26
1344 1734 3.172824 GCGAGGTTTCAACAAAACGAAA 58.827 40.909 0.00 0.00 46.85 3.46
1420 1810 1.349234 GGTTGTTGATGAAATGCGCC 58.651 50.000 4.18 0.00 0.00 6.53
1502 1892 0.376852 CCCACACAACACACACGAAG 59.623 55.000 0.00 0.00 0.00 3.79
1581 1971 2.764128 GCCCTCTCGATGTCCCCA 60.764 66.667 0.00 0.00 0.00 4.96
1614 2004 0.393077 ACACGAACTTCCTCCACAGG 59.607 55.000 0.00 0.00 42.01 4.00
1647 2037 2.368591 ACCGAGAATGGTTCCGGAA 58.631 52.632 14.35 14.35 39.99 4.30
1654 2044 3.007940 TGATCAACTGAACCGAGAATGGT 59.992 43.478 0.00 0.00 46.67 3.55
1668 2058 3.708403 TCCTGCTTCATGTGATCAACT 57.292 42.857 0.00 0.00 0.00 3.16
1692 2082 6.551736 GCAAACACTTCAAGAACTAAACTCA 58.448 36.000 0.00 0.00 0.00 3.41
1693 2083 5.677178 CGCAAACACTTCAAGAACTAAACTC 59.323 40.000 0.00 0.00 0.00 3.01
1694 2084 5.123344 ACGCAAACACTTCAAGAACTAAACT 59.877 36.000 0.00 0.00 0.00 2.66
1706 2096 2.764251 ATCGCGCACGCAAACACTTC 62.764 55.000 16.04 0.00 42.06 3.01
1707 2097 2.892334 ATCGCGCACGCAAACACTT 61.892 52.632 16.04 0.00 42.06 3.16
1708 2098 3.345808 ATCGCGCACGCAAACACT 61.346 55.556 16.04 0.00 42.06 3.55
1709 2099 3.158813 CATCGCGCACGCAAACAC 61.159 61.111 16.04 0.00 42.06 3.32
1712 2102 2.127421 GAACATCGCGCACGCAAA 60.127 55.556 16.04 2.57 42.06 3.68
1714 2104 3.776849 CAGAACATCGCGCACGCA 61.777 61.111 16.04 2.79 42.06 5.24
1716 2106 1.225475 GTTCAGAACATCGCGCACG 60.225 57.895 8.75 0.00 42.01 5.34
1729 2120 1.945387 ATGTATGCAGCGAGGTTCAG 58.055 50.000 0.00 0.00 0.00 3.02
1732 2123 2.009774 GTCAATGTATGCAGCGAGGTT 58.990 47.619 0.00 0.00 0.00 3.50
1734 2125 0.940126 GGTCAATGTATGCAGCGAGG 59.060 55.000 0.00 0.00 0.00 4.63
1735 2126 0.578683 CGGTCAATGTATGCAGCGAG 59.421 55.000 0.00 0.00 34.33 5.03
1747 2138 2.910688 ATAATCGTCAGCCGGTCAAT 57.089 45.000 1.90 0.00 37.11 2.57
1749 2140 2.675844 CAAAATAATCGTCAGCCGGTCA 59.324 45.455 1.90 0.00 37.11 4.02
1752 2143 2.791158 GCACAAAATAATCGTCAGCCGG 60.791 50.000 0.00 0.00 37.11 6.13
1765 2156 5.673514 ACCTTGTCAAAATCTGCACAAAAT 58.326 33.333 0.00 0.00 30.08 1.82
1860 2251 4.848685 ACGTCTCAAAGCCAACGT 57.151 50.000 0.00 0.00 42.96 3.99
1871 2262 2.266554 CTCATCAGGAAAGCACGTCTC 58.733 52.381 0.00 0.00 0.00 3.36
1977 2368 2.409870 GCTCCAACCAGAATGCCGG 61.410 63.158 0.00 0.00 31.97 6.13
1978 2369 1.033746 ATGCTCCAACCAGAATGCCG 61.034 55.000 0.00 0.00 31.97 5.69
1981 2372 4.730949 AAATGATGCTCCAACCAGAATG 57.269 40.909 0.00 0.00 0.00 2.67
1985 2376 5.389859 TTGTTAAATGATGCTCCAACCAG 57.610 39.130 0.00 0.00 0.00 4.00
2068 2459 1.668419 ACTCACGCACTTTGCTTCTT 58.332 45.000 0.00 0.00 42.25 2.52
2233 2624 1.742880 CTCCAGGTCATGTGCCACG 60.743 63.158 10.70 0.00 0.00 4.94
2299 2690 4.712051 TCAGCATAATGGGCATCTTACT 57.288 40.909 0.00 0.00 0.00 2.24
2302 2693 3.117398 TCCTTCAGCATAATGGGCATCTT 60.117 43.478 0.00 0.00 0.00 2.40
2311 2702 6.753913 TCATCCTACTTCCTTCAGCATAAT 57.246 37.500 0.00 0.00 0.00 1.28
2511 2996 1.399714 CTATACAGACTGGGTGCCGA 58.600 55.000 7.51 0.00 0.00 5.54
2538 3023 8.798859 ATACTACAGAACAAGCATTTCAGAAT 57.201 30.769 0.00 0.00 0.00 2.40
2611 3096 6.842437 ACTCTGCAGACTAGAAATCTACAA 57.158 37.500 13.74 0.00 0.00 2.41
2647 3132 6.086785 AGAGTAAGGAGGCGTGTAAATATC 57.913 41.667 0.00 0.00 0.00 1.63
2921 3406 9.737427 ACTTCAGATACATAATAACGAGTTCAG 57.263 33.333 0.00 0.00 0.00 3.02
2963 3448 2.983229 AGATGTCAGGAAGTGCACATC 58.017 47.619 21.04 17.14 40.45 3.06
3115 3600 0.169672 CGAACAGAAGGCATGCAAGG 59.830 55.000 21.36 6.28 0.00 3.61
3214 3700 6.603997 TGCCTTGAAGTTTTCCAAACTAAGTA 59.396 34.615 2.36 0.00 0.00 2.24
3383 3869 8.690840 GCAAGTTACAAACATTCAACTGTAATC 58.309 33.333 0.00 0.00 36.82 1.75
3531 4019 5.717078 AAATGTAGTCCGAGACTTGTGTA 57.283 39.130 11.09 0.00 40.28 2.90
3660 4148 4.011966 TCACAGTACAGAGACTAACCGA 57.988 45.455 0.00 0.00 0.00 4.69
3668 4156 7.232118 TGAAGAATCATTCACAGTACAGAGA 57.768 36.000 0.00 0.00 34.31 3.10
3672 4160 8.219546 TGTTTTGAAGAATCATTCACAGTACA 57.780 30.769 0.00 5.34 38.87 2.90
3673 4161 8.958043 GTTGTTTTGAAGAATCATTCACAGTAC 58.042 33.333 0.00 3.19 38.87 2.73
3721 4209 7.041098 ACTCATGTTGTTCCATCAAGTAAACTC 60.041 37.037 0.00 0.00 0.00 3.01
3728 4216 5.352569 GGTCTACTCATGTTGTTCCATCAAG 59.647 44.000 0.00 0.00 0.00 3.02
3738 4226 1.471676 GGAGGCGGTCTACTCATGTTG 60.472 57.143 0.00 0.00 35.45 3.33
3739 4227 0.824759 GGAGGCGGTCTACTCATGTT 59.175 55.000 0.00 0.00 35.45 2.71
3755 4243 5.299531 TGAGAACATAGTATTGTCTCCGGAG 59.700 44.000 26.32 26.32 0.00 4.63
3758 4246 5.163550 TGGTGAGAACATAGTATTGTCTCCG 60.164 44.000 13.66 0.00 36.36 4.63
3761 4249 9.823647 CTATTTGGTGAGAACATAGTATTGTCT 57.176 33.333 0.00 0.00 0.00 3.41
3764 4252 7.498900 TGCCTATTTGGTGAGAACATAGTATTG 59.501 37.037 0.00 0.00 38.35 1.90
3768 4256 5.435686 TGCCTATTTGGTGAGAACATAGT 57.564 39.130 0.00 0.00 38.35 2.12
3773 4261 5.241728 AGAAACTTGCCTATTTGGTGAGAAC 59.758 40.000 0.00 0.00 38.35 3.01
3803 4301 2.675348 GCTGAAAGTGCACAGTAGATCC 59.325 50.000 21.04 0.00 36.62 3.36
3829 4329 2.108250 TCAGCAACTAGGGCTCCTTTTT 59.892 45.455 8.08 0.00 40.23 1.94
3863 4363 5.830912 TGTTTTTCTGCTTGATAAGTGGTG 58.169 37.500 0.00 0.00 0.00 4.17
3865 4365 6.317789 TCTGTTTTTCTGCTTGATAAGTGG 57.682 37.500 0.00 0.00 0.00 4.00
3882 4382 5.869579 TGACCTCTTAGAATGCTTCTGTTT 58.130 37.500 8.21 0.00 40.94 2.83
3886 4386 5.163322 CCTGATGACCTCTTAGAATGCTTCT 60.163 44.000 4.26 4.26 43.72 2.85
3923 4423 2.350522 CGTGAAGCAACCTTAGCAGAT 58.649 47.619 0.00 0.00 0.00 2.90
3937 4437 1.078709 CATGTGTGGTAGCCGTGAAG 58.921 55.000 0.00 0.00 0.00 3.02
3974 4474 0.039437 GTCGAACCTCACTCGAAGCA 60.039 55.000 0.00 0.00 46.13 3.91
4031 4532 4.378046 CGGCTTACACAAAGGTACATGAAC 60.378 45.833 0.00 0.00 35.58 3.18
4035 4536 3.071479 CACGGCTTACACAAAGGTACAT 58.929 45.455 0.00 0.00 35.58 2.29
4051 4552 4.760047 AGTCATCACGCCCACGGC 62.760 66.667 0.00 0.00 46.75 5.68
4057 4558 2.271800 CCTGTAAGAAGTCATCACGCC 58.728 52.381 0.00 0.00 34.07 5.68
4069 4570 3.072330 TGTTGAGAACATGCCCTGTAAGA 59.928 43.478 0.00 0.00 36.98 2.10
4080 4581 3.904339 ACTAGGTCCAGTGTTGAGAACAT 59.096 43.478 0.00 0.00 44.35 2.71
4116 4617 6.687105 GGTGCGATAATGATAACAAACTCAAC 59.313 38.462 0.00 0.00 0.00 3.18
4133 4634 2.560981 TGACTCTTTCAGTGGTGCGATA 59.439 45.455 0.00 0.00 34.41 2.92
4168 4669 2.106511 TCTGTTATCCTTAGCATGGCCC 59.893 50.000 0.00 0.00 0.00 5.80
4172 4673 7.386025 TCGAATTCATCTGTTATCCTTAGCATG 59.614 37.037 6.22 0.00 0.00 4.06
4178 4679 9.482627 GATAACTCGAATTCATCTGTTATCCTT 57.517 33.333 22.61 8.27 40.89 3.36
4185 4686 5.053145 GGCTGATAACTCGAATTCATCTGT 58.947 41.667 6.22 0.00 0.00 3.41
4200 4701 2.881513 TGACGCAAACTTTGGCTGATAA 59.118 40.909 3.69 0.00 0.00 1.75
4217 4718 1.172180 AACCTTGTGGCCACATGACG 61.172 55.000 39.51 29.34 41.52 4.35
4239 4740 3.327404 TTTCACTCCCTCGCCCCC 61.327 66.667 0.00 0.00 0.00 5.40
4243 4744 1.219393 CTCCCTTTCACTCCCTCGC 59.781 63.158 0.00 0.00 0.00 5.03
4246 4747 0.622665 CATGCTCCCTTTCACTCCCT 59.377 55.000 0.00 0.00 0.00 4.20
4249 4750 1.743996 GGACATGCTCCCTTTCACTC 58.256 55.000 0.00 0.00 31.83 3.51
4252 4753 0.250234 CTCGGACATGCTCCCTTTCA 59.750 55.000 8.25 0.00 35.21 2.69
4265 4766 4.154347 CAGGGAGCCAGCTCGGAC 62.154 72.222 13.23 6.55 43.59 4.79
4268 4769 4.154347 GTCCAGGGAGCCAGCTCG 62.154 72.222 13.23 0.09 43.59 5.03
4272 4773 0.984230 TAGTTTGTCCAGGGAGCCAG 59.016 55.000 0.00 0.00 0.00 4.85
4325 4826 0.321671 ACATCTCCCACCACGAGTTG 59.678 55.000 0.00 0.00 34.57 3.16
4331 4832 0.036010 CCTGACACATCTCCCACCAC 60.036 60.000 0.00 0.00 0.00 4.16
4355 4859 7.973944 GGCCTAACCAAAATAACACTTCTATTG 59.026 37.037 0.00 0.00 38.86 1.90
4358 4862 6.657541 CAGGCCTAACCAAAATAACACTTCTA 59.342 38.462 3.98 0.00 43.14 2.10
4415 4919 2.555199 GCATAAGCATCTCTCACCGTT 58.445 47.619 0.00 0.00 41.58 4.44
4512 5016 4.080807 TGACACTTGAACCCAGTCAGTTAA 60.081 41.667 0.00 0.00 34.59 2.01
4922 5436 5.178809 ACTCGCTAATTTTGTTCTTTACGCT 59.821 36.000 0.00 0.00 0.00 5.07
4946 5460 5.991606 GTGGCTGCATCACTAGTTATAATGA 59.008 40.000 11.62 0.00 32.78 2.57
5012 5526 4.223700 TGTTCTCAGGCTTGATGTACAGAT 59.776 41.667 0.00 0.00 31.68 2.90
5112 5627 5.733620 TTCTGTGACTTAGGTATCGGTTT 57.266 39.130 0.00 0.00 0.00 3.27
5168 5683 3.008375 TGCAGGAGAATTGCTAGTGTTCT 59.992 43.478 6.23 6.23 42.02 3.01
5169 5684 3.126000 GTGCAGGAGAATTGCTAGTGTTC 59.874 47.826 0.00 0.00 42.02 3.18
5208 5724 3.559655 TGCAGTGACAAGTGTTGTATGAC 59.440 43.478 0.00 0.00 45.52 3.06
5239 5755 2.936919 TGATAGGTATTGCAGGGCAG 57.063 50.000 0.00 0.00 40.61 4.85
5290 5806 0.597568 TGCCCACTCAAATTTGCTCG 59.402 50.000 13.54 6.83 0.00 5.03
5309 5825 7.335627 TCCATGATCGTACCAGAAAACTTATT 58.664 34.615 0.00 0.00 0.00 1.40
5319 5835 0.681733 CCCCTCCATGATCGTACCAG 59.318 60.000 0.00 0.00 0.00 4.00
5335 5851 1.606601 GTTCTGGGAGGTTTGCCCC 60.607 63.158 0.00 0.00 45.40 5.80
5361 5878 2.508887 CAGTCGCCAGCTGAGCTC 60.509 66.667 17.39 6.82 36.40 4.09
5377 5894 2.116827 ATTTTTACCGCGATCACCCA 57.883 45.000 8.23 0.00 0.00 4.51
5381 5898 3.206964 TGCCATATTTTTACCGCGATCA 58.793 40.909 8.23 0.00 0.00 2.92
5453 5970 1.371183 CGACCCAGGTCTGCTCAAA 59.629 57.895 14.69 0.00 42.54 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.