Multiple sequence alignment - TraesCS3A01G394000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G394000 chr3A 100.000 2266 0 0 1839 4104 641824056 641826321 0.000000e+00 4185.0
1 TraesCS3A01G394000 chr3A 100.000 1398 0 0 1 1398 641822218 641823615 0.000000e+00 2582.0
2 TraesCS3A01G394000 chr3A 93.162 117 8 0 139 255 65783090 65782974 5.450000e-39 172.0
3 TraesCS3A01G394000 chr3A 96.875 32 0 1 3805 3836 597829817 597829787 7.000000e-03 52.8
4 TraesCS3A01G394000 chr3B 90.575 2207 137 38 1920 4104 664110042 664112199 0.000000e+00 2857.0
5 TraesCS3A01G394000 chr3B 93.299 388 14 6 785 1166 664109060 664109441 2.770000e-156 562.0
6 TraesCS3A01G394000 chr3B 79.507 527 45 27 256 764 664108528 664109009 2.380000e-82 316.0
7 TraesCS3A01G394000 chr3D 94.452 1514 72 6 2597 4104 502959936 502961443 0.000000e+00 2320.0
8 TraesCS3A01G394000 chr3D 94.033 419 20 5 2146 2564 502959522 502959935 7.490000e-177 630.0
9 TraesCS3A01G394000 chr3D 93.216 398 21 4 785 1179 502958494 502958888 7.650000e-162 580.0
10 TraesCS3A01G394000 chr3D 85.572 201 11 3 256 446 502957783 502957975 1.160000e-45 195.0
11 TraesCS3A01G394000 chr3D 83.981 206 17 3 1920 2109 502959325 502959530 2.520000e-42 183.0
12 TraesCS3A01G394000 chr3D 88.462 52 6 0 1841 1892 502959228 502959279 3.420000e-06 63.9
13 TraesCS3A01G394000 chr7A 96.078 255 10 0 1 255 655420083 655419829 2.280000e-112 416.0
14 TraesCS3A01G394000 chr7A 95.219 251 12 0 1 251 671204379 671204129 8.270000e-107 398.0
15 TraesCS3A01G394000 chr7A 92.941 255 18 0 1 255 176994180 176993926 5.010000e-99 372.0
16 TraesCS3A01G394000 chr7A 96.875 32 0 1 3805 3836 566028998 566028968 7.000000e-03 52.8
17 TraesCS3A01G394000 chr6A 95.635 252 11 0 1 252 549429886 549430137 4.940000e-109 405.0
18 TraesCS3A01G394000 chr6A 95.142 247 12 0 5 251 615015383 615015629 1.380000e-104 390.0
19 TraesCS3A01G394000 chr2B 94.466 253 13 1 1 252 644566589 644566841 4.970000e-104 388.0
20 TraesCS3A01G394000 chr5B 93.725 255 16 0 1 255 606638976 606638722 2.310000e-102 383.0
21 TraesCS3A01G394000 chr5A 94.196 224 13 0 1 224 561673213 561672990 3.930000e-90 342.0
22 TraesCS3A01G394000 chr2D 91.373 255 9 2 1 255 174231147 174230906 1.830000e-88 337.0
23 TraesCS3A01G394000 chr4A 96.875 32 0 1 3805 3836 174387645 174387615 7.000000e-03 52.8
24 TraesCS3A01G394000 chr4A 96.875 32 0 1 3805 3836 603658287 603658317 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G394000 chr3A 641822218 641826321 4103 False 3383.500000 4185 100.000000 1 4104 2 chr3A.!!$F1 4103
1 TraesCS3A01G394000 chr3B 664108528 664112199 3671 False 1245.000000 2857 87.793667 256 4104 3 chr3B.!!$F1 3848
2 TraesCS3A01G394000 chr3D 502957783 502961443 3660 False 661.983333 2320 89.952667 256 4104 6 chr3D.!!$F1 3848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.034186 TGGGATGGACCAGACAATGC 60.034 55.0 0.00 0.0 41.20 3.56 F
1337 1648 0.107654 GAGTGGGGAATCGTTCAGGG 60.108 60.0 1.25 0.0 0.00 4.45 F
1974 2460 0.299300 TGACTGCGTGTTTCGTTTCG 59.701 50.0 0.00 0.0 42.13 3.46 F
2993 3502 0.681733 CCCCTCCATGATCGTACCAG 59.318 60.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2441 0.299300 CGAAACGAAACACGCAGTCA 59.701 50.0 0.00 0.00 41.61 3.41 R
2250 2753 0.398318 GCCGCTTAGGATCCCATCTT 59.602 55.0 8.55 0.00 45.00 2.40 R
3003 3512 0.597568 CGAGCAAATTTGAGTGGGCA 59.402 50.0 22.31 0.00 0.00 5.36 R
4073 4597 0.599558 CATGTGGCCACAAGGTTCAG 59.400 55.0 40.48 20.06 45.41 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.807814 ACCTATGGGATGGACCAGAC 58.192 55.000 0.25 0.00 45.20 3.51
20 21 1.009552 ACCTATGGGATGGACCAGACA 59.990 52.381 0.25 0.00 45.20 3.41
21 22 2.126882 CCTATGGGATGGACCAGACAA 58.873 52.381 0.00 0.00 45.20 3.18
22 23 2.713167 CCTATGGGATGGACCAGACAAT 59.287 50.000 0.00 0.00 45.20 2.71
23 24 2.742428 ATGGGATGGACCAGACAATG 57.258 50.000 0.00 0.00 45.20 2.82
24 25 0.034186 TGGGATGGACCAGACAATGC 60.034 55.000 0.00 0.00 41.20 3.56
25 26 1.097547 GGGATGGACCAGACAATGCG 61.098 60.000 0.00 0.00 41.20 4.73
26 27 1.718757 GGATGGACCAGACAATGCGC 61.719 60.000 0.00 0.00 38.79 6.09
27 28 1.718757 GATGGACCAGACAATGCGCC 61.719 60.000 4.18 0.00 0.00 6.53
28 29 2.359850 GGACCAGACAATGCGCCA 60.360 61.111 4.18 0.00 0.00 5.69
29 30 1.971167 GGACCAGACAATGCGCCAA 60.971 57.895 4.18 0.00 0.00 4.52
30 31 1.503542 GACCAGACAATGCGCCAAG 59.496 57.895 4.18 0.00 0.00 3.61
31 32 0.955428 GACCAGACAATGCGCCAAGA 60.955 55.000 4.18 0.00 0.00 3.02
32 33 0.322816 ACCAGACAATGCGCCAAGAT 60.323 50.000 4.18 0.00 0.00 2.40
33 34 1.065491 ACCAGACAATGCGCCAAGATA 60.065 47.619 4.18 0.00 0.00 1.98
34 35 2.224606 CCAGACAATGCGCCAAGATAT 58.775 47.619 4.18 0.00 0.00 1.63
35 36 2.031420 CCAGACAATGCGCCAAGATATG 60.031 50.000 4.18 0.00 0.00 1.78
36 37 2.615447 CAGACAATGCGCCAAGATATGT 59.385 45.455 4.18 0.00 0.00 2.29
37 38 3.065786 CAGACAATGCGCCAAGATATGTT 59.934 43.478 4.18 0.00 0.00 2.71
38 39 3.065786 AGACAATGCGCCAAGATATGTTG 59.934 43.478 4.18 5.62 0.00 3.33
87 88 9.689976 AGACGATCTCATATTTGATTACTCTTG 57.310 33.333 0.00 0.00 0.00 3.02
88 89 8.304202 ACGATCTCATATTTGATTACTCTTGC 57.696 34.615 0.00 0.00 0.00 4.01
89 90 7.928167 ACGATCTCATATTTGATTACTCTTGCA 59.072 33.333 0.00 0.00 0.00 4.08
90 91 8.768019 CGATCTCATATTTGATTACTCTTGCAA 58.232 33.333 0.00 0.00 0.00 4.08
115 116 9.965824 AAAGATTTGTACTTTGTTTACATCTGG 57.034 29.630 0.00 0.00 36.43 3.86
116 117 8.918202 AGATTTGTACTTTGTTTACATCTGGA 57.082 30.769 0.00 0.00 29.60 3.86
117 118 9.520515 AGATTTGTACTTTGTTTACATCTGGAT 57.479 29.630 0.00 0.00 29.60 3.41
121 122 8.246908 TGTACTTTGTTTACATCTGGATAACG 57.753 34.615 0.00 0.00 0.00 3.18
122 123 7.874016 TGTACTTTGTTTACATCTGGATAACGT 59.126 33.333 0.00 0.00 0.00 3.99
123 124 7.129109 ACTTTGTTTACATCTGGATAACGTG 57.871 36.000 0.00 0.00 0.00 4.49
124 125 6.708949 ACTTTGTTTACATCTGGATAACGTGT 59.291 34.615 0.00 0.00 0.00 4.49
125 126 6.715344 TTGTTTACATCTGGATAACGTGTC 57.285 37.500 0.00 0.00 0.00 3.67
126 127 4.860352 TGTTTACATCTGGATAACGTGTCG 59.140 41.667 0.00 0.00 0.00 4.35
127 128 4.968812 TTACATCTGGATAACGTGTCGA 57.031 40.909 0.00 0.00 0.00 4.20
128 129 3.422417 ACATCTGGATAACGTGTCGAG 57.578 47.619 6.83 6.83 0.00 4.04
129 130 2.120232 CATCTGGATAACGTGTCGAGC 58.880 52.381 7.93 0.00 0.00 5.03
130 131 0.454600 TCTGGATAACGTGTCGAGCC 59.545 55.000 7.93 0.00 0.00 4.70
131 132 0.172578 CTGGATAACGTGTCGAGCCA 59.827 55.000 0.00 0.00 0.00 4.75
132 133 0.172578 TGGATAACGTGTCGAGCCAG 59.827 55.000 0.00 0.00 0.00 4.85
133 134 0.454600 GGATAACGTGTCGAGCCAGA 59.545 55.000 0.00 0.00 0.00 3.86
134 135 1.546834 GATAACGTGTCGAGCCAGAC 58.453 55.000 0.00 2.53 41.30 3.51
139 140 2.734591 TGTCGAGCCAGACACCAC 59.265 61.111 7.66 0.00 45.18 4.16
140 141 2.048127 GTCGAGCCAGACACCACC 60.048 66.667 4.50 0.00 40.65 4.61
141 142 2.203640 TCGAGCCAGACACCACCT 60.204 61.111 0.00 0.00 0.00 4.00
142 143 2.047844 CGAGCCAGACACCACCTG 60.048 66.667 0.00 0.00 0.00 4.00
143 144 2.872388 CGAGCCAGACACCACCTGT 61.872 63.158 0.00 0.00 34.96 4.00
151 152 2.144952 ACACCACCTGTCAGCATCA 58.855 52.632 0.00 0.00 0.00 3.07
152 153 0.473755 ACACCACCTGTCAGCATCAA 59.526 50.000 0.00 0.00 0.00 2.57
153 154 1.133823 ACACCACCTGTCAGCATCAAA 60.134 47.619 0.00 0.00 0.00 2.69
154 155 1.955778 CACCACCTGTCAGCATCAAAA 59.044 47.619 0.00 0.00 0.00 2.44
155 156 2.559668 CACCACCTGTCAGCATCAAAAT 59.440 45.455 0.00 0.00 0.00 1.82
156 157 3.758023 CACCACCTGTCAGCATCAAAATA 59.242 43.478 0.00 0.00 0.00 1.40
157 158 4.218200 CACCACCTGTCAGCATCAAAATAA 59.782 41.667 0.00 0.00 0.00 1.40
158 159 4.832266 ACCACCTGTCAGCATCAAAATAAA 59.168 37.500 0.00 0.00 0.00 1.40
159 160 5.304101 ACCACCTGTCAGCATCAAAATAAAA 59.696 36.000 0.00 0.00 0.00 1.52
160 161 6.183360 ACCACCTGTCAGCATCAAAATAAAAA 60.183 34.615 0.00 0.00 0.00 1.94
161 162 6.875195 CCACCTGTCAGCATCAAAATAAAAAT 59.125 34.615 0.00 0.00 0.00 1.82
162 163 8.034215 CCACCTGTCAGCATCAAAATAAAAATA 58.966 33.333 0.00 0.00 0.00 1.40
163 164 9.590451 CACCTGTCAGCATCAAAATAAAAATAT 57.410 29.630 0.00 0.00 0.00 1.28
167 168 9.449550 TGTCAGCATCAAAATAAAAATATAGCG 57.550 29.630 0.00 0.00 0.00 4.26
168 169 8.420189 GTCAGCATCAAAATAAAAATATAGCGC 58.580 33.333 0.00 0.00 0.00 5.92
169 170 7.594758 TCAGCATCAAAATAAAAATATAGCGCC 59.405 33.333 2.29 0.00 0.00 6.53
170 171 7.381948 CAGCATCAAAATAAAAATATAGCGCCA 59.618 33.333 2.29 0.00 0.00 5.69
171 172 7.596248 AGCATCAAAATAAAAATATAGCGCCAG 59.404 33.333 2.29 0.00 0.00 4.85
172 173 7.594758 GCATCAAAATAAAAATATAGCGCCAGA 59.405 33.333 2.29 0.00 0.00 3.86
173 174 9.462174 CATCAAAATAAAAATATAGCGCCAGAA 57.538 29.630 2.29 0.00 0.00 3.02
175 176 9.677567 TCAAAATAAAAATATAGCGCCAGAATC 57.322 29.630 2.29 0.00 0.00 2.52
176 177 9.683069 CAAAATAAAAATATAGCGCCAGAATCT 57.317 29.630 2.29 0.00 0.00 2.40
177 178 9.683069 AAAATAAAAATATAGCGCCAGAATCTG 57.317 29.630 2.29 2.68 0.00 2.90
195 196 9.685828 CAGAATCTGGATTACTACTAACTTAGC 57.314 37.037 1.53 0.00 0.00 3.09
196 197 9.422681 AGAATCTGGATTACTACTAACTTAGCA 57.577 33.333 0.00 0.00 0.00 3.49
201 202 9.694137 CTGGATTACTACTAACTTAGCATTACC 57.306 37.037 0.00 0.00 0.00 2.85
202 203 9.430399 TGGATTACTACTAACTTAGCATTACCT 57.570 33.333 0.00 0.00 0.00 3.08
203 204 9.694137 GGATTACTACTAACTTAGCATTACCTG 57.306 37.037 0.00 0.00 0.00 4.00
207 208 8.773404 ACTACTAACTTAGCATTACCTGTTTG 57.227 34.615 0.00 0.00 0.00 2.93
208 209 8.591072 ACTACTAACTTAGCATTACCTGTTTGA 58.409 33.333 0.00 0.00 0.00 2.69
209 210 9.431887 CTACTAACTTAGCATTACCTGTTTGAA 57.568 33.333 0.00 0.00 0.00 2.69
210 211 8.095937 ACTAACTTAGCATTACCTGTTTGAAC 57.904 34.615 0.00 0.00 0.00 3.18
211 212 6.952773 AACTTAGCATTACCTGTTTGAACA 57.047 33.333 0.00 0.00 37.37 3.18
212 213 6.952773 ACTTAGCATTACCTGTTTGAACAA 57.047 33.333 0.00 0.00 38.66 2.83
213 214 7.341445 ACTTAGCATTACCTGTTTGAACAAA 57.659 32.000 0.00 0.00 38.66 2.83
214 215 7.777095 ACTTAGCATTACCTGTTTGAACAAAA 58.223 30.769 1.47 0.00 38.66 2.44
226 227 4.839668 TTGAACAAAACATTAGGACCGG 57.160 40.909 0.00 0.00 0.00 5.28
227 228 2.554893 TGAACAAAACATTAGGACCGGC 59.445 45.455 0.00 0.00 0.00 6.13
228 229 1.161843 ACAAAACATTAGGACCGGCG 58.838 50.000 0.00 0.00 0.00 6.46
229 230 0.179174 CAAAACATTAGGACCGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
230 231 1.310216 AAAACATTAGGACCGGCGCC 61.310 55.000 19.07 19.07 0.00 6.53
231 232 3.692370 AACATTAGGACCGGCGCCC 62.692 63.158 23.46 6.77 0.00 6.13
232 233 3.861797 CATTAGGACCGGCGCCCT 61.862 66.667 23.46 19.95 36.60 5.19
233 234 3.087906 ATTAGGACCGGCGCCCTT 61.088 61.111 23.46 7.70 34.11 3.95
234 235 3.400599 ATTAGGACCGGCGCCCTTG 62.401 63.158 23.46 12.58 34.11 3.61
310 311 4.170062 CCGCTCATGCAGTTGCCG 62.170 66.667 1.06 0.00 41.18 5.69
354 355 4.837797 CATGATTGGGGCGGGCCA 62.838 66.667 23.10 2.56 37.98 5.36
355 356 3.836481 ATGATTGGGGCGGGCCAT 61.836 61.111 23.10 8.09 37.98 4.40
411 433 1.008194 TCACCGTTCCGTTGAGTCG 60.008 57.895 0.00 0.00 0.00 4.18
414 436 0.595825 ACCGTTCCGTTGAGTCGTTC 60.596 55.000 0.00 0.00 0.00 3.95
443 465 4.712425 CAAAGCGTGCCTGCCTGC 62.712 66.667 0.00 0.00 34.65 4.85
501 523 7.335924 GGCCATAATAAGCTAATTAATCACGGA 59.664 37.037 0.00 0.00 0.00 4.69
502 524 8.175716 GCCATAATAAGCTAATTAATCACGGAC 58.824 37.037 0.00 0.00 0.00 4.79
503 525 8.665685 CCATAATAAGCTAATTAATCACGGACC 58.334 37.037 0.00 0.00 0.00 4.46
504 526 8.665685 CATAATAAGCTAATTAATCACGGACCC 58.334 37.037 0.00 0.00 0.00 4.46
505 527 3.107642 AGCTAATTAATCACGGACCCG 57.892 47.619 6.94 6.94 46.03 5.28
506 528 1.529865 GCTAATTAATCACGGACCCGC 59.470 52.381 8.55 0.00 44.19 6.13
529 551 2.613506 CGCCACCGGACAAAACCTC 61.614 63.158 9.46 0.00 0.00 3.85
541 563 3.994392 GACAAAACCTCGAGCTGATTGTA 59.006 43.478 17.99 0.00 30.37 2.41
542 564 4.385825 ACAAAACCTCGAGCTGATTGTAA 58.614 39.130 17.06 0.00 0.00 2.41
543 565 4.819630 ACAAAACCTCGAGCTGATTGTAAA 59.180 37.500 17.06 0.00 0.00 2.01
554 576 5.043248 AGCTGATTGTAAATTAATTGGCGC 58.957 37.500 0.00 0.00 0.00 6.53
557 579 5.105752 TGATTGTAAATTAATTGGCGCCAC 58.894 37.500 32.95 15.25 0.00 5.01
558 580 4.521130 TTGTAAATTAATTGGCGCCACA 57.479 36.364 32.95 21.02 0.00 4.17
559 581 4.727507 TGTAAATTAATTGGCGCCACAT 57.272 36.364 32.95 23.41 0.00 3.21
560 582 4.428209 TGTAAATTAATTGGCGCCACATG 58.572 39.130 32.95 0.00 0.00 3.21
561 583 1.938625 AATTAATTGGCGCCACATGC 58.061 45.000 32.95 0.00 0.00 4.06
562 584 0.822811 ATTAATTGGCGCCACATGCA 59.177 45.000 32.95 15.80 41.33 3.96
563 585 0.605083 TTAATTGGCGCCACATGCAA 59.395 45.000 32.95 14.88 41.33 4.08
564 586 0.108898 TAATTGGCGCCACATGCAAC 60.109 50.000 32.95 0.00 41.33 4.17
565 587 1.818959 AATTGGCGCCACATGCAACT 61.819 50.000 32.95 0.00 41.33 3.16
568 590 3.364441 GCGCCACATGCAACTCCA 61.364 61.111 0.00 0.00 41.33 3.86
569 591 2.918345 GCGCCACATGCAACTCCAA 61.918 57.895 0.00 0.00 41.33 3.53
570 592 1.081242 CGCCACATGCAACTCCAAC 60.081 57.895 0.00 0.00 41.33 3.77
571 593 1.290009 GCCACATGCAACTCCAACC 59.710 57.895 0.00 0.00 40.77 3.77
572 594 1.966762 CCACATGCAACTCCAACCC 59.033 57.895 0.00 0.00 0.00 4.11
573 595 1.535204 CCACATGCAACTCCAACCCC 61.535 60.000 0.00 0.00 0.00 4.95
621 644 3.330720 CTCCACCCCACCCCTGAC 61.331 72.222 0.00 0.00 0.00 3.51
740 774 4.403734 TCACCTCCCCAGTTCAAAAATAC 58.596 43.478 0.00 0.00 0.00 1.89
745 779 4.069304 TCCCCAGTTCAAAAATACACTCG 58.931 43.478 0.00 0.00 0.00 4.18
763 797 4.785669 CTCGGCAGAGCAAGTTTATTAG 57.214 45.455 0.00 0.00 37.73 1.73
764 798 4.184629 CTCGGCAGAGCAAGTTTATTAGT 58.815 43.478 0.00 0.00 37.73 2.24
765 799 4.181578 TCGGCAGAGCAAGTTTATTAGTC 58.818 43.478 0.00 0.00 0.00 2.59
827 1098 2.717701 AGGGGAGGTATAAGTAGGGC 57.282 55.000 0.00 0.00 0.00 5.19
907 1181 3.815401 AGGCTATAAATTTAGTGCTGCGG 59.185 43.478 18.44 0.00 0.00 5.69
919 1193 0.907704 TGCTGCGGGTATATAGGGGG 60.908 60.000 0.00 0.00 0.00 5.40
927 1201 3.229293 GGGTATATAGGGGGATCGCTAC 58.771 54.545 9.90 3.23 40.49 3.58
934 1208 2.040178 AGGGGGATCGCTACAAGTAAG 58.960 52.381 9.90 0.00 34.19 2.34
940 1214 2.288969 CGCTACAAGTAAGCGCTCC 58.711 57.895 12.06 4.30 44.91 4.70
1168 1446 4.065789 CAAGTTCTTCCTCACCAGGTAAC 58.934 47.826 0.00 0.00 41.28 2.50
1173 1451 1.061546 TCCTCACCAGGTAACCCAAC 58.938 55.000 0.00 0.00 41.28 3.77
1179 1457 1.271707 ACCAGGTAACCCAACCAATCG 60.272 52.381 0.00 0.00 42.40 3.34
1180 1458 0.808755 CAGGTAACCCAACCAATCGC 59.191 55.000 0.00 0.00 42.40 4.58
1183 1461 4.850513 AGGTAACCCAACCAATCGCTGG 62.851 54.545 2.11 2.11 45.96 4.85
1204 1482 2.362800 GCCAACGACGACTGACGAC 61.363 63.158 0.00 0.00 45.77 4.34
1205 1483 1.728426 CCAACGACGACTGACGACC 60.728 63.158 0.00 0.00 45.77 4.79
1206 1484 1.728426 CAACGACGACTGACGACCC 60.728 63.158 0.00 0.00 45.77 4.46
1207 1485 1.895707 AACGACGACTGACGACCCT 60.896 57.895 0.00 0.00 45.77 4.34
1208 1486 1.450531 AACGACGACTGACGACCCTT 61.451 55.000 0.00 0.00 45.77 3.95
1209 1487 1.442184 CGACGACTGACGACCCTTG 60.442 63.158 6.52 0.00 45.77 3.61
1210 1488 1.733399 GACGACTGACGACCCTTGC 60.733 63.158 6.52 0.00 45.77 4.01
1211 1489 2.143594 GACGACTGACGACCCTTGCT 62.144 60.000 6.52 0.00 45.77 3.91
1212 1490 1.444553 CGACTGACGACCCTTGCTC 60.445 63.158 0.00 0.00 45.77 4.26
1213 1491 1.867919 CGACTGACGACCCTTGCTCT 61.868 60.000 0.00 0.00 45.77 4.09
1214 1492 0.389166 GACTGACGACCCTTGCTCTG 60.389 60.000 0.00 0.00 0.00 3.35
1215 1493 0.827925 ACTGACGACCCTTGCTCTGA 60.828 55.000 0.00 0.00 0.00 3.27
1216 1494 0.389166 CTGACGACCCTTGCTCTGAC 60.389 60.000 0.00 0.00 0.00 3.51
1217 1495 1.079750 GACGACCCTTGCTCTGACC 60.080 63.158 0.00 0.00 0.00 4.02
1218 1496 1.534235 ACGACCCTTGCTCTGACCT 60.534 57.895 0.00 0.00 0.00 3.85
1219 1497 1.122019 ACGACCCTTGCTCTGACCTT 61.122 55.000 0.00 0.00 0.00 3.50
1220 1498 0.390472 CGACCCTTGCTCTGACCTTC 60.390 60.000 0.00 0.00 0.00 3.46
1221 1499 0.390472 GACCCTTGCTCTGACCTTCG 60.390 60.000 0.00 0.00 0.00 3.79
1226 1504 0.320771 TTGCTCTGACCTTCGCTTCC 60.321 55.000 0.00 0.00 0.00 3.46
1227 1505 1.293498 GCTCTGACCTTCGCTTCCA 59.707 57.895 0.00 0.00 0.00 3.53
1229 1507 0.390472 CTCTGACCTTCGCTTCCACC 60.390 60.000 0.00 0.00 0.00 4.61
1244 1522 2.540910 ACCTCCTCCTCCCCTGGA 60.541 66.667 0.00 0.00 34.52 3.86
1246 1524 2.443016 CTCCTCCTCCCCTGGACG 60.443 72.222 0.00 0.00 31.94 4.79
1247 1525 4.075793 TCCTCCTCCCCTGGACGG 62.076 72.222 0.00 0.00 31.94 4.79
1259 1563 3.431725 GGACGGCGCCTTCTTTGG 61.432 66.667 29.44 13.02 0.00 3.28
1269 1573 1.256812 CCTTCTTTGGCCGTGGAATT 58.743 50.000 0.00 0.00 0.00 2.17
1277 1581 3.814268 CCGTGGAATTGCGGCCAG 61.814 66.667 2.24 0.00 41.53 4.85
1278 1582 2.745884 CGTGGAATTGCGGCCAGA 60.746 61.111 2.24 0.00 34.22 3.86
1279 1583 2.753966 CGTGGAATTGCGGCCAGAG 61.754 63.158 2.24 0.00 34.22 3.35
1280 1584 2.045045 TGGAATTGCGGCCAGAGG 60.045 61.111 2.24 0.00 0.00 3.69
1281 1585 2.272146 GGAATTGCGGCCAGAGGA 59.728 61.111 2.24 0.00 0.00 3.71
1282 1586 1.821332 GGAATTGCGGCCAGAGGAG 60.821 63.158 2.24 0.00 0.00 3.69
1283 1587 1.821332 GAATTGCGGCCAGAGGAGG 60.821 63.158 2.24 0.00 0.00 4.30
1284 1588 2.257409 GAATTGCGGCCAGAGGAGGA 62.257 60.000 2.24 0.00 0.00 3.71
1294 1598 1.650528 CAGAGGAGGAGGGTCAAAGT 58.349 55.000 0.00 0.00 0.00 2.66
1296 1600 3.173965 CAGAGGAGGAGGGTCAAAGTTA 58.826 50.000 0.00 0.00 0.00 2.24
1304 1608 4.658901 AGGAGGGTCAAAGTTAGTCTTCAA 59.341 41.667 0.00 0.00 35.02 2.69
1306 1610 6.004574 GGAGGGTCAAAGTTAGTCTTCAATT 58.995 40.000 0.00 0.00 35.02 2.32
1307 1611 6.490381 GGAGGGTCAAAGTTAGTCTTCAATTT 59.510 38.462 0.00 0.00 35.02 1.82
1308 1612 7.014326 GGAGGGTCAAAGTTAGTCTTCAATTTT 59.986 37.037 0.00 0.00 35.02 1.82
1309 1613 7.941919 AGGGTCAAAGTTAGTCTTCAATTTTC 58.058 34.615 0.00 0.00 35.02 2.29
1310 1614 7.559897 AGGGTCAAAGTTAGTCTTCAATTTTCA 59.440 33.333 0.00 0.00 35.02 2.69
1311 1615 7.648112 GGGTCAAAGTTAGTCTTCAATTTTCAC 59.352 37.037 0.00 0.00 35.02 3.18
1312 1616 8.188139 GGTCAAAGTTAGTCTTCAATTTTCACA 58.812 33.333 0.00 0.00 35.02 3.58
1313 1617 9.226345 GTCAAAGTTAGTCTTCAATTTTCACAG 57.774 33.333 0.00 0.00 35.02 3.66
1315 1619 9.956720 CAAAGTTAGTCTTCAATTTTCACAGAT 57.043 29.630 0.00 0.00 35.02 2.90
1333 1644 4.141914 ACAGATTAGAGTGGGGAATCGTTC 60.142 45.833 0.00 0.00 35.23 3.95
1337 1648 0.107654 GAGTGGGGAATCGTTCAGGG 60.108 60.000 1.25 0.00 0.00 4.45
1338 1649 1.077716 GTGGGGAATCGTTCAGGGG 60.078 63.158 1.25 0.00 0.00 4.79
1339 1650 1.229690 TGGGGAATCGTTCAGGGGA 60.230 57.895 1.25 0.00 0.00 4.81
1340 1651 1.271840 TGGGGAATCGTTCAGGGGAG 61.272 60.000 1.25 0.00 0.00 4.30
1341 1652 0.981277 GGGGAATCGTTCAGGGGAGA 60.981 60.000 1.25 0.00 0.00 3.71
1342 1653 1.132500 GGGAATCGTTCAGGGGAGAT 58.868 55.000 1.25 0.00 0.00 2.75
1343 1654 1.070914 GGGAATCGTTCAGGGGAGATC 59.929 57.143 0.00 0.00 0.00 2.75
1344 1655 2.043227 GGAATCGTTCAGGGGAGATCT 58.957 52.381 0.00 0.00 0.00 2.75
1345 1656 2.224161 GGAATCGTTCAGGGGAGATCTG 60.224 54.545 0.00 0.00 0.00 2.90
1346 1657 1.418334 ATCGTTCAGGGGAGATCTGG 58.582 55.000 0.00 0.00 33.36 3.86
1348 1659 0.905357 CGTTCAGGGGAGATCTGGTT 59.095 55.000 0.00 0.00 33.36 3.67
1349 1660 1.134670 CGTTCAGGGGAGATCTGGTTC 60.135 57.143 0.00 0.00 33.36 3.62
1350 1661 1.909302 GTTCAGGGGAGATCTGGTTCA 59.091 52.381 0.00 0.00 33.36 3.18
1352 1663 1.362584 TCAGGGGAGATCTGGTTCAGA 59.637 52.381 0.00 0.00 44.99 3.27
1353 1664 2.191400 CAGGGGAGATCTGGTTCAGAA 58.809 52.381 0.00 0.00 44.04 3.02
1354 1665 2.776536 CAGGGGAGATCTGGTTCAGAAT 59.223 50.000 0.00 0.00 44.04 2.40
1358 1669 3.614092 GGAGATCTGGTTCAGAATGCAA 58.386 45.455 0.00 0.00 44.04 4.08
1379 1694 5.128919 CAATTCCCTCCGATTCTCTGATTT 58.871 41.667 0.00 0.00 0.00 2.17
1390 1705 2.983229 TCTCTGATTTTGCTCTGCTCC 58.017 47.619 0.00 0.00 0.00 4.70
1391 1706 2.570752 TCTCTGATTTTGCTCTGCTCCT 59.429 45.455 0.00 0.00 0.00 3.69
1392 1707 3.008813 TCTCTGATTTTGCTCTGCTCCTT 59.991 43.478 0.00 0.00 0.00 3.36
1393 1708 3.079578 TCTGATTTTGCTCTGCTCCTTG 58.920 45.455 0.00 0.00 0.00 3.61
1394 1709 2.163815 CTGATTTTGCTCTGCTCCTTGG 59.836 50.000 0.00 0.00 0.00 3.61
1397 1712 1.426251 TTTGCTCTGCTCCTTGGGGA 61.426 55.000 0.00 0.00 39.70 4.81
1869 2184 8.250332 TCTTCAAATTAAGCATATGGTTTGGTC 58.750 33.333 24.01 0.00 37.00 4.02
1872 2187 1.102978 AAGCATATGGTTTGGTCGGC 58.897 50.000 14.31 0.00 30.70 5.54
1889 2204 4.722700 CCCGTGCCTGTTCTGGGG 62.723 72.222 0.00 0.00 36.16 4.96
1890 2205 3.953775 CCGTGCCTGTTCTGGGGT 61.954 66.667 0.00 0.00 0.00 4.95
1942 2428 4.796312 ACACATCTAAACAAACGTTGCAAC 59.204 37.500 19.89 19.89 0.00 4.17
1943 2429 5.034152 CACATCTAAACAAACGTTGCAACT 58.966 37.500 26.09 11.38 0.00 3.16
1949 2435 4.624336 AACAAACGTTGCAACTCACATA 57.376 36.364 26.09 0.00 0.00 2.29
1955 2441 4.569943 ACGTTGCAACTCACATATTCTCT 58.430 39.130 26.09 0.00 0.00 3.10
1974 2460 0.299300 TGACTGCGTGTTTCGTTTCG 59.701 50.000 0.00 0.00 42.13 3.46
1978 2464 1.765750 CTGCGTGTTTCGTTTCGTTTC 59.234 47.619 0.00 0.00 42.13 2.78
1998 2484 1.284785 CCATTCAGAGGCCCTTAACCA 59.715 52.381 0.00 0.00 0.00 3.67
2005 2491 2.173569 AGAGGCCCTTAACCATGATCAC 59.826 50.000 0.00 0.00 0.00 3.06
2067 2570 1.452110 TTGGGCGTTGATCTGACATG 58.548 50.000 0.00 0.00 0.00 3.21
2069 2572 1.210234 TGGGCGTTGATCTGACATGAT 59.790 47.619 0.00 0.00 0.00 2.45
2098 2601 8.615360 TGGATTTTGTGATTAATTCCCCATTA 57.385 30.769 0.00 0.00 0.00 1.90
2099 2602 8.482128 TGGATTTTGTGATTAATTCCCCATTAC 58.518 33.333 0.00 0.00 0.00 1.89
2100 2603 8.482128 GGATTTTGTGATTAATTCCCCATTACA 58.518 33.333 0.00 0.00 0.00 2.41
2101 2604 9.313118 GATTTTGTGATTAATTCCCCATTACAC 57.687 33.333 0.00 0.00 30.23 2.90
2106 2609 7.122055 TGTGATTAATTCCCCATTACACACTTC 59.878 37.037 0.00 0.00 36.09 3.01
2109 2612 2.489938 TCCCCATTACACACTTCTGC 57.510 50.000 0.00 0.00 0.00 4.26
2120 2623 1.732259 ACACTTCTGCGCCTTTATTCG 59.268 47.619 4.18 0.00 0.00 3.34
2130 2633 4.530094 CGCCTTTATTCGCACTATCAAA 57.470 40.909 0.00 0.00 0.00 2.69
2131 2634 5.095691 CGCCTTTATTCGCACTATCAAAT 57.904 39.130 0.00 0.00 0.00 2.32
2132 2635 6.223138 CGCCTTTATTCGCACTATCAAATA 57.777 37.500 0.00 0.00 0.00 1.40
2186 2689 9.906660 TTAATTGTTGCAGTAAGTTTTCATAGG 57.093 29.630 0.00 0.00 0.00 2.57
2189 2692 5.048782 TGTTGCAGTAAGTTTTCATAGGCAG 60.049 40.000 0.00 0.00 0.00 4.85
2250 2753 8.146053 TGACTGAATGAAGGTATAAGGAGAAA 57.854 34.615 0.00 0.00 0.00 2.52
2325 2828 1.189446 GCGACCGTTACAGCATTATCG 59.811 52.381 0.00 0.00 0.00 2.92
2411 2914 3.637229 AGTGTGGTAGGTTATCCATCTCG 59.363 47.826 0.00 0.00 36.09 4.04
2477 2984 2.991250 TGCTTCTTCCTGGACATAAGC 58.009 47.619 21.35 21.35 39.73 3.09
2568 3075 2.986479 TGTCTGTTGATTCATGACGACG 59.014 45.455 0.00 0.00 0.00 5.12
2715 3222 5.581126 TGCTTTGATGTTCTGAGTTTTGT 57.419 34.783 0.00 0.00 0.00 2.83
2718 3225 7.715657 TGCTTTGATGTTCTGAGTTTTGTAAT 58.284 30.769 0.00 0.00 0.00 1.89
2726 3233 7.083858 TGTTCTGAGTTTTGTAATTATGCTGC 58.916 34.615 0.00 0.00 0.00 5.25
2729 3236 3.769536 AGTTTTGTAATTATGCTGCGCC 58.230 40.909 4.18 0.00 0.00 6.53
2740 3247 2.743928 CTGCGCCTTGTCCTGACC 60.744 66.667 4.18 0.00 0.00 4.02
2859 3366 1.371183 CGACCCAGGTCTGCTCAAA 59.629 57.895 14.69 0.00 42.54 2.69
2882 3390 9.059260 CAAATGTCCTTTTCATTCTCCATTTTT 57.941 29.630 0.00 0.00 34.92 1.94
2884 3392 9.933723 AATGTCCTTTTCATTCTCCATTTTTAG 57.066 29.630 0.00 0.00 30.95 1.85
2885 3393 8.477419 TGTCCTTTTCATTCTCCATTTTTAGT 57.523 30.769 0.00 0.00 0.00 2.24
2886 3394 9.581289 TGTCCTTTTCATTCTCCATTTTTAGTA 57.419 29.630 0.00 0.00 0.00 1.82
2931 3439 3.206964 TGCCATATTTTTACCGCGATCA 58.793 40.909 8.23 0.00 0.00 2.92
2935 3443 2.116827 ATTTTTACCGCGATCACCCA 57.883 45.000 8.23 0.00 0.00 4.51
2951 3459 2.508887 CAGTCGCCAGCTGAGCTC 60.509 66.667 17.39 6.82 36.40 4.09
2977 3486 1.606601 GTTCTGGGAGGTTTGCCCC 60.607 63.158 0.00 0.00 45.40 5.80
2993 3502 0.681733 CCCCTCCATGATCGTACCAG 59.318 60.000 0.00 0.00 0.00 4.00
3003 3512 7.335627 TCCATGATCGTACCAGAAAACTTATT 58.664 34.615 0.00 0.00 0.00 1.40
3022 3531 0.597568 TGCCCACTCAAATTTGCTCG 59.402 50.000 13.54 6.83 0.00 5.03
3073 3582 2.936919 TGATAGGTATTGCAGGGCAG 57.063 50.000 0.00 0.00 40.61 4.85
3104 3613 3.559655 TGCAGTGACAAGTGTTGTATGAC 59.440 43.478 0.00 0.00 45.52 3.06
3143 3653 3.126000 GTGCAGGAGAATTGCTAGTGTTC 59.874 47.826 0.00 0.00 42.02 3.18
3144 3654 3.008375 TGCAGGAGAATTGCTAGTGTTCT 59.992 43.478 6.23 6.23 42.02 3.01
3200 3710 5.733620 TTCTGTGACTTAGGTATCGGTTT 57.266 39.130 0.00 0.00 0.00 3.27
3300 3811 4.223700 TGTTCTCAGGCTTGATGTACAGAT 59.776 41.667 0.00 0.00 31.68 2.90
3366 3877 5.991606 GTGGCTGCATCACTAGTTATAATGA 59.008 40.000 11.62 0.00 32.78 2.57
3390 3901 5.178809 ACTCGCTAATTTTGTTCTTTACGCT 59.821 36.000 0.00 0.00 0.00 5.07
3800 4321 4.080807 TGACACTTGAACCCAGTCAGTTAA 60.081 41.667 0.00 0.00 34.59 2.01
3897 4418 2.555199 GCATAAGCATCTCTCACCGTT 58.445 47.619 0.00 0.00 41.58 4.44
3954 4475 6.657541 CAGGCCTAACCAAAATAACACTTCTA 59.342 38.462 3.98 0.00 43.14 2.10
3957 4478 7.973944 GGCCTAACCAAAATAACACTTCTATTG 59.026 37.037 0.00 0.00 38.86 1.90
3981 4502 0.036010 CCTGACACATCTCCCACCAC 60.036 60.000 0.00 0.00 0.00 4.16
3984 4505 0.108615 GACACATCTCCCACCACGAG 60.109 60.000 0.00 0.00 0.00 4.18
3985 4506 0.832135 ACACATCTCCCACCACGAGT 60.832 55.000 0.00 0.00 0.00 4.18
3986 4507 0.321671 CACATCTCCCACCACGAGTT 59.678 55.000 0.00 0.00 0.00 3.01
4040 4564 0.984230 TAGTTTGTCCAGGGAGCCAG 59.016 55.000 0.00 0.00 0.00 4.85
4044 4568 4.154347 GTCCAGGGAGCCAGCTCG 62.154 72.222 13.23 0.09 43.59 5.03
4047 4571 4.154347 CAGGGAGCCAGCTCGGAC 62.154 72.222 13.23 6.55 43.59 4.79
4060 4584 0.250234 CTCGGACATGCTCCCTTTCA 59.750 55.000 8.25 0.00 35.21 2.69
4063 4587 1.743996 GGACATGCTCCCTTTCACTC 58.256 55.000 0.00 0.00 31.83 3.51
4066 4590 0.622665 CATGCTCCCTTTCACTCCCT 59.377 55.000 0.00 0.00 0.00 4.20
4069 4593 1.219393 CTCCCTTTCACTCCCTCGC 59.781 63.158 0.00 0.00 0.00 5.03
4073 4597 3.327404 TTTCACTCCCTCGCCCCC 61.327 66.667 0.00 0.00 0.00 5.40
4095 4619 1.172180 AACCTTGTGGCCACATGACG 61.172 55.000 39.51 29.34 41.52 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.009552 TGTCTGGTCCATCCCATAGGT 59.990 52.381 0.00 0.00 33.00 3.08
1 2 1.806496 TGTCTGGTCCATCCCATAGG 58.194 55.000 0.00 0.00 33.00 2.57
2 3 3.748083 CATTGTCTGGTCCATCCCATAG 58.252 50.000 0.00 0.00 33.00 2.23
3 4 2.158623 GCATTGTCTGGTCCATCCCATA 60.159 50.000 0.00 0.00 33.00 2.74
4 5 1.410648 GCATTGTCTGGTCCATCCCAT 60.411 52.381 0.00 0.00 33.00 4.00
5 6 0.034186 GCATTGTCTGGTCCATCCCA 60.034 55.000 0.00 0.00 34.77 4.37
6 7 1.097547 CGCATTGTCTGGTCCATCCC 61.098 60.000 0.00 0.00 34.77 3.85
7 8 1.718757 GCGCATTGTCTGGTCCATCC 61.719 60.000 0.30 0.00 0.00 3.51
8 9 1.718757 GGCGCATTGTCTGGTCCATC 61.719 60.000 10.83 0.00 0.00 3.51
9 10 1.750399 GGCGCATTGTCTGGTCCAT 60.750 57.895 10.83 0.00 0.00 3.41
10 11 2.359850 GGCGCATTGTCTGGTCCA 60.360 61.111 10.83 0.00 0.00 4.02
11 12 1.926511 CTTGGCGCATTGTCTGGTCC 61.927 60.000 10.83 0.00 0.00 4.46
12 13 0.955428 TCTTGGCGCATTGTCTGGTC 60.955 55.000 10.83 0.00 0.00 4.02
13 14 0.322816 ATCTTGGCGCATTGTCTGGT 60.323 50.000 10.83 0.00 0.00 4.00
14 15 1.667236 TATCTTGGCGCATTGTCTGG 58.333 50.000 10.83 0.00 0.00 3.86
15 16 2.615447 ACATATCTTGGCGCATTGTCTG 59.385 45.455 10.83 0.22 0.00 3.51
16 17 2.923121 ACATATCTTGGCGCATTGTCT 58.077 42.857 10.83 0.00 0.00 3.41
17 18 3.365832 CAACATATCTTGGCGCATTGTC 58.634 45.455 10.83 0.00 0.00 3.18
18 19 2.099592 CCAACATATCTTGGCGCATTGT 59.900 45.455 10.83 0.00 34.50 2.71
19 20 2.734670 CCAACATATCTTGGCGCATTG 58.265 47.619 10.83 0.00 34.50 2.82
26 27 4.789012 AACTGTTGCCAACATATCTTGG 57.211 40.909 11.26 5.43 43.36 3.61
27 28 6.252967 TGTAACTGTTGCCAACATATCTTG 57.747 37.500 11.26 0.60 41.26 3.02
28 29 7.466746 AATGTAACTGTTGCCAACATATCTT 57.533 32.000 11.26 3.39 41.26 2.40
29 30 8.752005 ATAATGTAACTGTTGCCAACATATCT 57.248 30.769 11.26 0.00 41.26 1.98
30 31 8.840321 AGATAATGTAACTGTTGCCAACATATC 58.160 33.333 11.26 12.63 41.26 1.63
31 32 8.752005 AGATAATGTAACTGTTGCCAACATAT 57.248 30.769 11.26 4.12 41.26 1.78
32 33 9.845740 ATAGATAATGTAACTGTTGCCAACATA 57.154 29.630 11.26 0.00 41.26 2.29
33 34 8.752005 ATAGATAATGTAACTGTTGCCAACAT 57.248 30.769 11.26 0.00 41.26 2.71
34 35 9.674068 TTATAGATAATGTAACTGTTGCCAACA 57.326 29.630 10.31 10.31 39.52 3.33
61 62 9.689976 CAAGAGTAATCAAATATGAGATCGTCT 57.310 33.333 0.00 0.00 39.39 4.18
62 63 8.431593 GCAAGAGTAATCAAATATGAGATCGTC 58.568 37.037 0.00 0.00 39.39 4.20
63 64 7.928167 TGCAAGAGTAATCAAATATGAGATCGT 59.072 33.333 0.00 0.00 39.39 3.73
64 65 8.302965 TGCAAGAGTAATCAAATATGAGATCG 57.697 34.615 0.00 0.00 39.39 3.69
67 68 9.671279 TCTTTGCAAGAGTAATCAAATATGAGA 57.329 29.630 0.00 0.00 34.33 3.27
74 75 9.677567 GTACAAATCTTTGCAAGAGTAATCAAA 57.322 29.630 0.00 0.00 41.61 2.69
75 76 9.066892 AGTACAAATCTTTGCAAGAGTAATCAA 57.933 29.630 0.00 0.00 41.61 2.57
76 77 8.621532 AGTACAAATCTTTGCAAGAGTAATCA 57.378 30.769 0.00 0.00 41.61 2.57
77 78 9.899226 AAAGTACAAATCTTTGCAAGAGTAATC 57.101 29.630 0.00 0.00 41.61 1.75
78 79 9.683069 CAAAGTACAAATCTTTGCAAGAGTAAT 57.317 29.630 0.00 0.00 42.93 1.89
89 90 9.965824 CCAGATGTAAACAAAGTACAAATCTTT 57.034 29.630 0.00 0.00 35.21 2.52
90 91 9.349713 TCCAGATGTAAACAAAGTACAAATCTT 57.650 29.630 0.00 0.00 35.21 2.40
91 92 8.918202 TCCAGATGTAAACAAAGTACAAATCT 57.082 30.769 0.00 0.00 35.21 2.40
95 96 8.714179 CGTTATCCAGATGTAAACAAAGTACAA 58.286 33.333 0.00 0.00 35.21 2.41
96 97 7.874016 ACGTTATCCAGATGTAAACAAAGTACA 59.126 33.333 0.00 0.00 35.98 2.90
97 98 8.166706 CACGTTATCCAGATGTAAACAAAGTAC 58.833 37.037 0.00 0.00 0.00 2.73
98 99 7.874016 ACACGTTATCCAGATGTAAACAAAGTA 59.126 33.333 0.00 0.00 0.00 2.24
99 100 6.708949 ACACGTTATCCAGATGTAAACAAAGT 59.291 34.615 0.00 0.00 0.00 2.66
100 101 7.129109 ACACGTTATCCAGATGTAAACAAAG 57.871 36.000 0.00 0.00 0.00 2.77
101 102 6.128769 CGACACGTTATCCAGATGTAAACAAA 60.129 38.462 0.00 0.00 0.00 2.83
102 103 5.346551 CGACACGTTATCCAGATGTAAACAA 59.653 40.000 0.00 0.00 0.00 2.83
103 104 4.860352 CGACACGTTATCCAGATGTAAACA 59.140 41.667 0.00 0.00 0.00 2.83
104 105 5.097529 TCGACACGTTATCCAGATGTAAAC 58.902 41.667 0.00 0.00 0.00 2.01
105 106 5.313520 TCGACACGTTATCCAGATGTAAA 57.686 39.130 0.00 0.00 0.00 2.01
106 107 4.732647 GCTCGACACGTTATCCAGATGTAA 60.733 45.833 0.00 0.00 0.00 2.41
107 108 3.242969 GCTCGACACGTTATCCAGATGTA 60.243 47.826 0.00 0.00 0.00 2.29
108 109 2.479730 GCTCGACACGTTATCCAGATGT 60.480 50.000 0.00 0.00 0.00 3.06
109 110 2.120232 GCTCGACACGTTATCCAGATG 58.880 52.381 0.00 0.00 0.00 2.90
110 111 1.067212 GGCTCGACACGTTATCCAGAT 59.933 52.381 0.00 0.00 0.00 2.90
111 112 0.454600 GGCTCGACACGTTATCCAGA 59.545 55.000 0.00 0.00 0.00 3.86
112 113 0.172578 TGGCTCGACACGTTATCCAG 59.827 55.000 0.00 0.00 0.00 3.86
113 114 0.172578 CTGGCTCGACACGTTATCCA 59.827 55.000 0.00 0.00 0.00 3.41
114 115 0.454600 TCTGGCTCGACACGTTATCC 59.545 55.000 0.00 0.00 0.00 2.59
115 116 1.135489 TGTCTGGCTCGACACGTTATC 60.135 52.381 6.18 0.00 38.89 1.75
116 117 0.885879 TGTCTGGCTCGACACGTTAT 59.114 50.000 6.18 0.00 38.89 1.89
117 118 2.333291 TGTCTGGCTCGACACGTTA 58.667 52.632 6.18 0.00 38.89 3.18
118 119 3.125607 TGTCTGGCTCGACACGTT 58.874 55.556 6.18 0.00 38.89 3.99
122 123 2.734591 GTGGTGTCTGGCTCGACA 59.265 61.111 6.18 6.18 41.33 4.35
123 124 2.048127 GGTGGTGTCTGGCTCGAC 60.048 66.667 1.37 1.37 34.52 4.20
124 125 2.203640 AGGTGGTGTCTGGCTCGA 60.204 61.111 0.00 0.00 0.00 4.04
125 126 2.047844 CAGGTGGTGTCTGGCTCG 60.048 66.667 0.00 0.00 0.00 5.03
126 127 3.151906 ACAGGTGGTGTCTGGCTC 58.848 61.111 0.00 0.00 31.90 4.70
133 134 0.473755 TTGATGCTGACAGGTGGTGT 59.526 50.000 4.26 0.00 44.49 4.16
134 135 1.608055 TTTGATGCTGACAGGTGGTG 58.392 50.000 4.26 0.00 0.00 4.17
135 136 2.363306 TTTTGATGCTGACAGGTGGT 57.637 45.000 4.26 0.00 0.00 4.16
136 137 5.389859 TTTATTTTGATGCTGACAGGTGG 57.610 39.130 4.26 0.00 0.00 4.61
137 138 7.894376 ATTTTTATTTTGATGCTGACAGGTG 57.106 32.000 4.26 0.00 0.00 4.00
141 142 9.449550 CGCTATATTTTTATTTTGATGCTGACA 57.550 29.630 0.00 0.00 0.00 3.58
142 143 8.420189 GCGCTATATTTTTATTTTGATGCTGAC 58.580 33.333 0.00 0.00 0.00 3.51
143 144 7.594758 GGCGCTATATTTTTATTTTGATGCTGA 59.405 33.333 7.64 0.00 0.00 4.26
144 145 7.381948 TGGCGCTATATTTTTATTTTGATGCTG 59.618 33.333 7.64 0.00 0.00 4.41
145 146 7.432869 TGGCGCTATATTTTTATTTTGATGCT 58.567 30.769 7.64 0.00 0.00 3.79
146 147 7.594758 TCTGGCGCTATATTTTTATTTTGATGC 59.405 33.333 7.64 0.00 0.00 3.91
147 148 9.462174 TTCTGGCGCTATATTTTTATTTTGATG 57.538 29.630 7.64 0.00 0.00 3.07
149 150 9.677567 GATTCTGGCGCTATATTTTTATTTTGA 57.322 29.630 7.64 0.00 0.00 2.69
150 151 9.683069 AGATTCTGGCGCTATATTTTTATTTTG 57.317 29.630 7.64 0.00 0.00 2.44
151 152 9.683069 CAGATTCTGGCGCTATATTTTTATTTT 57.317 29.630 7.64 0.00 0.00 1.82
152 153 8.299570 CCAGATTCTGGCGCTATATTTTTATTT 58.700 33.333 19.49 0.00 45.13 1.40
153 154 7.820648 CCAGATTCTGGCGCTATATTTTTATT 58.179 34.615 19.49 0.00 45.13 1.40
154 155 7.383102 CCAGATTCTGGCGCTATATTTTTAT 57.617 36.000 19.49 0.00 45.13 1.40
155 156 6.801539 CCAGATTCTGGCGCTATATTTTTA 57.198 37.500 19.49 0.00 45.13 1.52
156 157 5.695851 CCAGATTCTGGCGCTATATTTTT 57.304 39.130 19.49 0.00 45.13 1.94
169 170 9.685828 GCTAAGTTAGTAGTAATCCAGATTCTG 57.314 37.037 11.51 6.70 32.50 3.02
170 171 9.422681 TGCTAAGTTAGTAGTAATCCAGATTCT 57.577 33.333 11.51 0.00 32.50 2.40
175 176 9.694137 GGTAATGCTAAGTTAGTAGTAATCCAG 57.306 37.037 9.31 0.00 0.00 3.86
176 177 9.430399 AGGTAATGCTAAGTTAGTAGTAATCCA 57.570 33.333 9.31 0.00 0.00 3.41
177 178 9.694137 CAGGTAATGCTAAGTTAGTAGTAATCC 57.306 37.037 9.31 7.95 0.00 3.01
181 182 9.865321 CAAACAGGTAATGCTAAGTTAGTAGTA 57.135 33.333 11.51 7.81 0.00 1.82
182 183 8.591072 TCAAACAGGTAATGCTAAGTTAGTAGT 58.409 33.333 11.51 8.80 0.00 2.73
183 184 8.997621 TCAAACAGGTAATGCTAAGTTAGTAG 57.002 34.615 11.51 0.00 0.00 2.57
184 185 9.211485 GTTCAAACAGGTAATGCTAAGTTAGTA 57.789 33.333 11.51 7.46 0.00 1.82
185 186 7.717875 TGTTCAAACAGGTAATGCTAAGTTAGT 59.282 33.333 11.51 0.00 34.30 2.24
186 187 8.094798 TGTTCAAACAGGTAATGCTAAGTTAG 57.905 34.615 5.47 5.47 34.30 2.34
187 188 8.453238 TTGTTCAAACAGGTAATGCTAAGTTA 57.547 30.769 0.00 0.00 40.50 2.24
188 189 6.952773 TGTTCAAACAGGTAATGCTAAGTT 57.047 33.333 0.00 0.00 34.30 2.66
189 190 6.952773 TTGTTCAAACAGGTAATGCTAAGT 57.047 33.333 0.00 0.00 40.50 2.24
190 191 8.061125 GTTTTGTTCAAACAGGTAATGCTAAG 57.939 34.615 0.00 0.00 43.93 2.18
191 192 7.995463 GTTTTGTTCAAACAGGTAATGCTAA 57.005 32.000 0.00 0.00 43.93 3.09
203 204 4.979815 CCGGTCCTAATGTTTTGTTCAAAC 59.020 41.667 0.00 0.00 44.64 2.93
204 205 4.500035 GCCGGTCCTAATGTTTTGTTCAAA 60.500 41.667 1.90 0.00 0.00 2.69
205 206 3.004944 GCCGGTCCTAATGTTTTGTTCAA 59.995 43.478 1.90 0.00 0.00 2.69
206 207 2.554893 GCCGGTCCTAATGTTTTGTTCA 59.445 45.455 1.90 0.00 0.00 3.18
207 208 2.413634 CGCCGGTCCTAATGTTTTGTTC 60.414 50.000 1.90 0.00 0.00 3.18
208 209 1.538075 CGCCGGTCCTAATGTTTTGTT 59.462 47.619 1.90 0.00 0.00 2.83
209 210 1.161843 CGCCGGTCCTAATGTTTTGT 58.838 50.000 1.90 0.00 0.00 2.83
210 211 0.179174 GCGCCGGTCCTAATGTTTTG 60.179 55.000 1.90 0.00 0.00 2.44
211 212 1.310216 GGCGCCGGTCCTAATGTTTT 61.310 55.000 12.58 0.00 0.00 2.43
212 213 1.747745 GGCGCCGGTCCTAATGTTT 60.748 57.895 12.58 0.00 0.00 2.83
213 214 2.124860 GGCGCCGGTCCTAATGTT 60.125 61.111 12.58 0.00 0.00 2.71
214 215 4.171103 GGGCGCCGGTCCTAATGT 62.171 66.667 22.54 0.00 34.09 2.71
237 238 3.690685 TATTGGGACCGCGCCTTGG 62.691 63.158 0.00 0.00 0.00 3.61
238 239 2.124901 TATTGGGACCGCGCCTTG 60.125 61.111 0.00 0.00 0.00 3.61
239 240 1.696097 ATCTATTGGGACCGCGCCTT 61.696 55.000 0.00 0.00 0.00 4.35
240 241 0.830444 TATCTATTGGGACCGCGCCT 60.830 55.000 0.00 0.00 0.00 5.52
241 242 0.389948 CTATCTATTGGGACCGCGCC 60.390 60.000 0.00 0.00 0.00 6.53
242 243 0.389948 CCTATCTATTGGGACCGCGC 60.390 60.000 0.00 0.00 0.00 6.86
243 244 0.246635 CCCTATCTATTGGGACCGCG 59.753 60.000 0.00 0.00 44.34 6.46
244 245 0.613777 CCCCTATCTATTGGGACCGC 59.386 60.000 10.64 0.00 44.34 5.68
245 246 0.613777 GCCCCTATCTATTGGGACCG 59.386 60.000 10.64 0.00 44.34 4.79
246 247 1.351350 GTGCCCCTATCTATTGGGACC 59.649 57.143 10.64 2.99 44.34 4.46
247 248 1.002087 CGTGCCCCTATCTATTGGGAC 59.998 57.143 10.64 0.25 44.34 4.46
248 249 1.348064 CGTGCCCCTATCTATTGGGA 58.652 55.000 10.64 0.00 44.34 4.37
249 250 0.321653 GCGTGCCCCTATCTATTGGG 60.322 60.000 2.76 2.76 41.72 4.12
250 251 0.670546 CGCGTGCCCCTATCTATTGG 60.671 60.000 0.00 0.00 0.00 3.16
251 252 0.033504 ACGCGTGCCCCTATCTATTG 59.966 55.000 12.93 0.00 0.00 1.90
252 253 0.756903 AACGCGTGCCCCTATCTATT 59.243 50.000 14.98 0.00 0.00 1.73
253 254 0.317479 GAACGCGTGCCCCTATCTAT 59.683 55.000 14.98 0.00 0.00 1.98
254 255 1.737816 GAACGCGTGCCCCTATCTA 59.262 57.895 14.98 0.00 0.00 1.98
411 433 1.334149 GCTTTGCGTGACTTGGAGAAC 60.334 52.381 0.00 0.00 0.00 3.01
442 464 3.875510 AAAGGACAGGCAGGCAGGC 62.876 63.158 0.00 0.00 44.61 4.85
443 465 0.829182 AAAAAGGACAGGCAGGCAGG 60.829 55.000 0.00 0.00 0.00 4.85
444 466 2.737503 AAAAAGGACAGGCAGGCAG 58.262 52.632 0.00 0.00 0.00 4.85
479 501 7.548075 CGGGTCCGTGATTAATTAGCTTATTAT 59.452 37.037 6.03 0.00 34.35 1.28
480 502 6.869913 CGGGTCCGTGATTAATTAGCTTATTA 59.130 38.462 1.06 1.06 34.35 0.98
481 503 5.699458 CGGGTCCGTGATTAATTAGCTTATT 59.301 40.000 3.13 3.13 34.35 1.40
482 504 5.235516 CGGGTCCGTGATTAATTAGCTTAT 58.764 41.667 0.00 0.00 34.35 1.73
483 505 4.624015 CGGGTCCGTGATTAATTAGCTTA 58.376 43.478 0.00 0.00 34.35 3.09
529 551 5.396362 CGCCAATTAATTTACAATCAGCTCG 59.604 40.000 0.00 0.00 0.00 5.03
541 563 2.278854 GCATGTGGCGCCAATTAATTT 58.721 42.857 34.66 7.96 0.00 1.82
542 564 1.938625 GCATGTGGCGCCAATTAATT 58.061 45.000 34.66 9.54 0.00 1.40
543 565 3.665544 GCATGTGGCGCCAATTAAT 57.334 47.368 34.66 19.48 0.00 1.40
554 576 1.535204 GGGGTTGGAGTTGCATGTGG 61.535 60.000 0.00 0.00 0.00 4.17
557 579 0.819582 GATGGGGTTGGAGTTGCATG 59.180 55.000 0.00 0.00 0.00 4.06
558 580 0.680921 CGATGGGGTTGGAGTTGCAT 60.681 55.000 0.00 0.00 0.00 3.96
559 581 1.303236 CGATGGGGTTGGAGTTGCA 60.303 57.895 0.00 0.00 0.00 4.08
560 582 2.700773 GCGATGGGGTTGGAGTTGC 61.701 63.158 0.00 0.00 0.00 4.17
561 583 2.046285 GGCGATGGGGTTGGAGTTG 61.046 63.158 0.00 0.00 0.00 3.16
562 584 2.355115 GGCGATGGGGTTGGAGTT 59.645 61.111 0.00 0.00 0.00 3.01
563 585 3.728373 GGGCGATGGGGTTGGAGT 61.728 66.667 0.00 0.00 0.00 3.85
564 586 4.506255 GGGGCGATGGGGTTGGAG 62.506 72.222 0.00 0.00 0.00 3.86
687 715 0.466189 CCGGAGATGATTGGGTTGGG 60.466 60.000 0.00 0.00 0.00 4.12
688 716 1.103398 GCCGGAGATGATTGGGTTGG 61.103 60.000 5.05 0.00 0.00 3.77
689 717 0.394216 TGCCGGAGATGATTGGGTTG 60.394 55.000 5.05 0.00 0.00 3.77
690 718 0.107017 CTGCCGGAGATGATTGGGTT 60.107 55.000 5.05 0.00 0.00 4.11
691 719 1.528824 CTGCCGGAGATGATTGGGT 59.471 57.895 5.05 0.00 0.00 4.51
740 774 1.795768 TAAACTTGCTCTGCCGAGTG 58.204 50.000 7.01 1.00 39.53 3.51
745 779 4.938226 ACTGACTAATAAACTTGCTCTGCC 59.062 41.667 0.00 0.00 0.00 4.85
778 1046 7.310734 CCCCCTATCTCGCTCTAGAAATTAATT 60.311 40.741 0.00 0.00 0.00 1.40
779 1047 6.155393 CCCCCTATCTCGCTCTAGAAATTAAT 59.845 42.308 0.00 0.00 0.00 1.40
780 1048 5.480772 CCCCCTATCTCGCTCTAGAAATTAA 59.519 44.000 0.00 0.00 0.00 1.40
781 1049 5.017490 CCCCCTATCTCGCTCTAGAAATTA 58.983 45.833 0.00 0.00 0.00 1.40
782 1050 3.835395 CCCCCTATCTCGCTCTAGAAATT 59.165 47.826 0.00 0.00 0.00 1.82
783 1051 3.436243 CCCCCTATCTCGCTCTAGAAAT 58.564 50.000 0.00 0.00 0.00 2.17
907 1181 3.907221 TGTAGCGATCCCCCTATATACC 58.093 50.000 0.00 0.00 0.00 2.73
927 1201 1.209128 CGGTATGGAGCGCTTACTTG 58.791 55.000 13.26 3.89 40.10 3.16
934 1208 0.389948 CTATTCCCGGTATGGAGCGC 60.390 60.000 0.00 0.00 45.21 5.92
991 1269 2.043953 GTCCCCCATGGCTGGTTC 60.044 66.667 6.09 3.86 41.37 3.62
1071 1349 0.748729 AGACGGCGAGGTAGGAGAAG 60.749 60.000 16.62 0.00 0.00 2.85
1184 1462 3.103911 GTCAGTCGTCGTTGGCGG 61.104 66.667 0.00 0.00 38.89 6.13
1185 1463 3.458579 CGTCAGTCGTCGTTGGCG 61.459 66.667 10.85 10.85 36.00 5.69
1186 1464 2.050714 TCGTCAGTCGTCGTTGGC 60.051 61.111 0.00 0.00 40.80 4.52
1187 1465 1.728426 GGTCGTCAGTCGTCGTTGG 60.728 63.158 0.00 0.00 40.80 3.77
1189 1467 1.450531 AAGGGTCGTCAGTCGTCGTT 61.451 55.000 0.00 0.00 40.80 3.85
1190 1468 1.895707 AAGGGTCGTCAGTCGTCGT 60.896 57.895 0.00 0.00 40.80 4.34
1192 1470 1.733399 GCAAGGGTCGTCAGTCGTC 60.733 63.158 0.00 0.00 40.80 4.20
1193 1471 2.143594 GAGCAAGGGTCGTCAGTCGT 62.144 60.000 0.00 0.00 40.80 4.34
1195 1473 0.389166 CAGAGCAAGGGTCGTCAGTC 60.389 60.000 0.00 0.00 35.00 3.51
1196 1474 0.827925 TCAGAGCAAGGGTCGTCAGT 60.828 55.000 0.00 0.00 35.00 3.41
1199 1477 1.079750 GGTCAGAGCAAGGGTCGTC 60.080 63.158 0.00 0.00 35.00 4.20
1200 1478 1.122019 AAGGTCAGAGCAAGGGTCGT 61.122 55.000 1.66 0.00 35.00 4.34
1202 1480 0.390472 CGAAGGTCAGAGCAAGGGTC 60.390 60.000 1.66 0.00 0.00 4.46
1204 1482 1.743252 GCGAAGGTCAGAGCAAGGG 60.743 63.158 1.66 0.00 0.00 3.95
1205 1483 0.321122 AAGCGAAGGTCAGAGCAAGG 60.321 55.000 1.66 0.00 37.06 3.61
1206 1484 1.074752 GAAGCGAAGGTCAGAGCAAG 58.925 55.000 1.66 0.00 37.06 4.01
1207 1485 0.320771 GGAAGCGAAGGTCAGAGCAA 60.321 55.000 1.66 0.00 37.06 3.91
1208 1486 1.293498 GGAAGCGAAGGTCAGAGCA 59.707 57.895 1.66 0.00 37.06 4.26
1209 1487 1.016653 GTGGAAGCGAAGGTCAGAGC 61.017 60.000 0.00 0.00 37.06 4.09
1210 1488 0.390472 GGTGGAAGCGAAGGTCAGAG 60.390 60.000 0.00 0.00 37.06 3.35
1211 1489 0.832135 AGGTGGAAGCGAAGGTCAGA 60.832 55.000 0.00 0.00 40.95 3.27
1212 1490 0.390472 GAGGTGGAAGCGAAGGTCAG 60.390 60.000 0.00 0.00 40.95 3.51
1213 1491 1.671742 GAGGTGGAAGCGAAGGTCA 59.328 57.895 0.00 0.00 40.95 4.02
1214 1492 1.079057 GGAGGTGGAAGCGAAGGTC 60.079 63.158 0.00 0.00 40.95 3.85
1215 1493 1.536662 AGGAGGTGGAAGCGAAGGT 60.537 57.895 0.00 0.00 40.95 3.50
1216 1494 1.219393 GAGGAGGTGGAAGCGAAGG 59.781 63.158 0.00 0.00 40.95 3.46
1217 1495 1.219393 GGAGGAGGTGGAAGCGAAG 59.781 63.158 0.00 0.00 40.95 3.79
1218 1496 1.229209 AGGAGGAGGTGGAAGCGAA 60.229 57.895 0.00 0.00 40.95 4.70
1219 1497 1.682684 GAGGAGGAGGTGGAAGCGA 60.683 63.158 0.00 0.00 40.95 4.93
1220 1498 2.726351 GGAGGAGGAGGTGGAAGCG 61.726 68.421 0.00 0.00 40.95 4.68
1221 1499 2.371259 GGGAGGAGGAGGTGGAAGC 61.371 68.421 0.00 0.00 0.00 3.86
1226 1504 2.366167 CCAGGGGAGGAGGAGGTG 60.366 72.222 0.00 0.00 0.00 4.00
1227 1505 2.540910 TCCAGGGGAGGAGGAGGT 60.541 66.667 0.00 0.00 32.77 3.85
1229 1507 2.443016 CGTCCAGGGGAGGAGGAG 60.443 72.222 0.00 0.00 44.32 3.69
1251 1529 1.669795 GCAATTCCACGGCCAAAGAAG 60.670 52.381 2.24 0.00 0.00 2.85
1252 1530 0.316841 GCAATTCCACGGCCAAAGAA 59.683 50.000 2.24 1.61 0.00 2.52
1254 1558 1.444212 CGCAATTCCACGGCCAAAG 60.444 57.895 2.24 0.00 0.00 2.77
1264 1568 1.821332 CTCCTCTGGCCGCAATTCC 60.821 63.158 0.00 0.00 0.00 3.01
1276 1580 2.424684 AACTTTGACCCTCCTCCTCT 57.575 50.000 0.00 0.00 0.00 3.69
1277 1581 3.174779 ACTAACTTTGACCCTCCTCCTC 58.825 50.000 0.00 0.00 0.00 3.71
1278 1582 3.174779 GACTAACTTTGACCCTCCTCCT 58.825 50.000 0.00 0.00 0.00 3.69
1279 1583 3.174779 AGACTAACTTTGACCCTCCTCC 58.825 50.000 0.00 0.00 0.00 4.30
1280 1584 4.283722 TGAAGACTAACTTTGACCCTCCTC 59.716 45.833 0.00 0.00 39.13 3.71
1281 1585 4.232091 TGAAGACTAACTTTGACCCTCCT 58.768 43.478 0.00 0.00 39.13 3.69
1282 1586 4.618920 TGAAGACTAACTTTGACCCTCC 57.381 45.455 0.00 0.00 39.13 4.30
1283 1587 7.511959 AAATTGAAGACTAACTTTGACCCTC 57.488 36.000 0.00 0.00 39.13 4.30
1284 1588 7.559897 TGAAAATTGAAGACTAACTTTGACCCT 59.440 33.333 0.00 0.00 39.13 4.34
1296 1600 8.997323 CACTCTAATCTGTGAAAATTGAAGACT 58.003 33.333 0.00 0.00 36.38 3.24
1304 1608 5.779241 TCCCCACTCTAATCTGTGAAAAT 57.221 39.130 0.00 0.00 36.38 1.82
1306 1610 5.626809 CGATTCCCCACTCTAATCTGTGAAA 60.627 44.000 0.00 0.00 36.38 2.69
1307 1611 4.141937 CGATTCCCCACTCTAATCTGTGAA 60.142 45.833 0.00 0.00 36.38 3.18
1308 1612 3.384789 CGATTCCCCACTCTAATCTGTGA 59.615 47.826 0.00 0.00 36.38 3.58
1309 1613 3.133003 ACGATTCCCCACTCTAATCTGTG 59.867 47.826 0.00 0.00 0.00 3.66
1310 1614 3.375699 ACGATTCCCCACTCTAATCTGT 58.624 45.455 0.00 0.00 0.00 3.41
1311 1615 4.141937 TGAACGATTCCCCACTCTAATCTG 60.142 45.833 0.00 0.00 0.00 2.90
1312 1616 4.030913 TGAACGATTCCCCACTCTAATCT 58.969 43.478 0.00 0.00 0.00 2.40
1313 1617 4.372656 CTGAACGATTCCCCACTCTAATC 58.627 47.826 0.00 0.00 0.00 1.75
1315 1619 2.500098 CCTGAACGATTCCCCACTCTAA 59.500 50.000 0.00 0.00 0.00 2.10
1316 1620 2.108168 CCTGAACGATTCCCCACTCTA 58.892 52.381 0.00 0.00 0.00 2.43
1319 1630 1.562672 CCCCTGAACGATTCCCCACT 61.563 60.000 0.00 0.00 0.00 4.00
1333 1644 1.871418 TCTGAACCAGATCTCCCCTG 58.129 55.000 0.00 0.00 35.39 4.45
1337 1648 3.272574 TGCATTCTGAACCAGATCTCC 57.727 47.619 0.00 0.00 40.39 3.71
1338 1649 5.221009 GGAATTGCATTCTGAACCAGATCTC 60.221 44.000 0.00 0.00 40.39 2.75
1339 1650 4.643784 GGAATTGCATTCTGAACCAGATCT 59.356 41.667 0.00 0.00 40.39 2.75
1340 1651 4.202090 GGGAATTGCATTCTGAACCAGATC 60.202 45.833 0.00 0.00 40.39 2.75
1341 1652 3.703052 GGGAATTGCATTCTGAACCAGAT 59.297 43.478 0.00 0.00 40.39 2.90
1342 1653 3.091545 GGGAATTGCATTCTGAACCAGA 58.908 45.455 0.00 0.00 38.87 3.86
1343 1654 3.094572 AGGGAATTGCATTCTGAACCAG 58.905 45.455 0.00 0.00 39.24 4.00
1344 1655 3.091545 GAGGGAATTGCATTCTGAACCA 58.908 45.455 0.00 0.00 39.24 3.67
1345 1656 2.428530 GGAGGGAATTGCATTCTGAACC 59.571 50.000 0.00 0.00 39.24 3.62
1346 1657 2.098117 CGGAGGGAATTGCATTCTGAAC 59.902 50.000 0.00 0.00 39.24 3.18
1348 1659 1.559219 TCGGAGGGAATTGCATTCTGA 59.441 47.619 0.00 3.89 39.24 3.27
1349 1660 2.042686 TCGGAGGGAATTGCATTCTG 57.957 50.000 0.00 1.46 39.24 3.02
1350 1661 3.117738 AGAATCGGAGGGAATTGCATTCT 60.118 43.478 0.00 1.71 39.24 2.40
1352 1663 3.117738 AGAGAATCGGAGGGAATTGCATT 60.118 43.478 0.00 0.00 42.67 3.56
1353 1664 2.441001 AGAGAATCGGAGGGAATTGCAT 59.559 45.455 0.00 0.00 42.67 3.96
1354 1665 1.839994 AGAGAATCGGAGGGAATTGCA 59.160 47.619 0.00 0.00 42.67 4.08
1358 1669 5.128919 CAAAATCAGAGAATCGGAGGGAAT 58.871 41.667 0.00 0.00 43.96 3.01
1370 1685 2.570752 AGGAGCAGAGCAAAATCAGAGA 59.429 45.455 0.00 0.00 0.00 3.10
1379 1694 1.847506 TCCCCAAGGAGCAGAGCAA 60.848 57.895 0.00 0.00 37.19 3.91
1859 2174 3.961414 ACGGGCCGACCAAACCAT 61.961 61.111 35.78 2.80 40.22 3.55
1860 2175 4.939368 CACGGGCCGACCAAACCA 62.939 66.667 35.78 0.00 40.22 3.67
1872 2187 4.722700 CCCCAGAACAGGCACGGG 62.723 72.222 0.00 0.00 36.59 5.28
1887 2202 2.857186 AATGCAAATTTCACCCACCC 57.143 45.000 0.00 0.00 0.00 4.61
1888 2203 4.006780 AGAAATGCAAATTTCACCCACC 57.993 40.909 13.74 0.00 41.63 4.61
1889 2204 5.055812 TGAAGAAATGCAAATTTCACCCAC 58.944 37.500 13.74 3.12 41.63 4.61
1890 2205 5.287674 TGAAGAAATGCAAATTTCACCCA 57.712 34.783 13.74 6.62 41.63 4.51
1942 2428 3.795639 CACGCAGTCAGAGAATATGTGAG 59.204 47.826 0.00 0.00 41.61 3.51
1943 2429 3.193479 ACACGCAGTCAGAGAATATGTGA 59.807 43.478 0.00 0.00 41.61 3.58
1949 2435 2.061773 CGAAACACGCAGTCAGAGAAT 58.938 47.619 0.00 0.00 41.61 2.40
1955 2441 0.299300 CGAAACGAAACACGCAGTCA 59.701 50.000 0.00 0.00 41.61 3.41
1974 2460 2.222227 AAGGGCCTCTGAATGGAAAC 57.778 50.000 6.46 0.00 0.00 2.78
1978 2464 1.284785 TGGTTAAGGGCCTCTGAATGG 59.715 52.381 6.46 0.00 0.00 3.16
2067 2570 9.264719 GGGAATTAATCACAAAATCCATTGATC 57.735 33.333 3.21 0.00 34.38 2.92
2069 2572 7.181665 TGGGGAATTAATCACAAAATCCATTGA 59.818 33.333 3.21 0.00 34.38 2.57
2098 2601 2.185004 ATAAAGGCGCAGAAGTGTGT 57.815 45.000 10.83 0.00 36.48 3.72
2099 2602 2.474526 CGAATAAAGGCGCAGAAGTGTG 60.475 50.000 10.83 0.00 37.24 3.82
2100 2603 1.732259 CGAATAAAGGCGCAGAAGTGT 59.268 47.619 10.83 0.00 0.00 3.55
2101 2604 2.442189 CGAATAAAGGCGCAGAAGTG 57.558 50.000 10.83 0.00 0.00 3.16
2109 2612 4.530094 TTTGATAGTGCGAATAAAGGCG 57.470 40.909 0.00 0.00 0.00 5.52
2250 2753 0.398318 GCCGCTTAGGATCCCATCTT 59.602 55.000 8.55 0.00 45.00 2.40
2411 2914 1.091771 CAGGTGATGCGTGATGGGAC 61.092 60.000 0.00 0.00 35.14 4.46
2449 2955 6.061022 TGTCCAGGAAGAAGCAACATATTA 57.939 37.500 0.00 0.00 0.00 0.98
2464 2971 2.429610 GGTAGAACGCTTATGTCCAGGA 59.570 50.000 0.00 0.00 0.00 3.86
2465 2972 2.167693 TGGTAGAACGCTTATGTCCAGG 59.832 50.000 0.00 0.00 0.00 4.45
2466 2973 3.520290 TGGTAGAACGCTTATGTCCAG 57.480 47.619 0.00 0.00 0.00 3.86
2568 3075 6.061231 ACAAAATCGAAACTCAAAGACCTC 57.939 37.500 0.00 0.00 0.00 3.85
2726 3233 0.875059 GAAAAGGTCAGGACAAGGCG 59.125 55.000 1.41 0.00 0.00 5.52
2729 3236 4.401925 AGAATGGAAAAGGTCAGGACAAG 58.598 43.478 1.41 0.00 0.00 3.16
2740 3247 6.923508 GGTTCAACACCTAAAGAATGGAAAAG 59.076 38.462 0.00 0.00 43.29 2.27
2859 3366 9.093458 ACTAAAAATGGAGAATGAAAAGGACAT 57.907 29.630 0.00 0.00 0.00 3.06
2882 3390 6.091713 GCTTTCGAACTGCCAAACTAATACTA 59.908 38.462 0.00 0.00 0.00 1.82
2883 3391 5.106673 GCTTTCGAACTGCCAAACTAATACT 60.107 40.000 0.00 0.00 0.00 2.12
2884 3392 5.086727 GCTTTCGAACTGCCAAACTAATAC 58.913 41.667 0.00 0.00 0.00 1.89
2885 3393 4.142988 CGCTTTCGAACTGCCAAACTAATA 60.143 41.667 14.30 0.00 38.10 0.98
2886 3394 3.364964 CGCTTTCGAACTGCCAAACTAAT 60.365 43.478 14.30 0.00 38.10 1.73
2887 3395 2.032377 CGCTTTCGAACTGCCAAACTAA 60.032 45.455 14.30 0.00 38.10 2.24
2931 3439 3.699894 CTCAGCTGGCGACTGGGT 61.700 66.667 15.13 0.00 35.78 4.51
2935 3443 1.897225 AATGAGCTCAGCTGGCGACT 61.897 55.000 22.96 6.14 39.88 4.18
2977 3486 4.759782 AGTTTTCTGGTACGATCATGGAG 58.240 43.478 0.00 0.00 0.00 3.86
2993 3502 7.575365 CAAATTTGAGTGGGCAATAAGTTTTC 58.425 34.615 13.08 0.00 0.00 2.29
3003 3512 0.597568 CGAGCAAATTTGAGTGGGCA 59.402 50.000 22.31 0.00 0.00 5.36
3073 3582 6.187125 ACACTTGTCACTGCAATGATAATC 57.813 37.500 7.80 0.00 30.44 1.75
3104 3613 1.301244 ACCTTGAGACACAGCAGCG 60.301 57.895 0.00 0.00 0.00 5.18
3144 3654 3.509575 GCTTCTTCTTCTCAGGTCTCTGA 59.490 47.826 0.00 0.00 46.81 3.27
3200 3710 2.984562 ACGGCACATCATTACACATCA 58.015 42.857 0.00 0.00 0.00 3.07
3261 3771 5.237815 TGAGAACATCACCTGAACATACAC 58.762 41.667 0.00 0.00 31.12 2.90
3325 3836 3.084786 GCCACTTTCTAGCTTTCACCAT 58.915 45.455 0.00 0.00 0.00 3.55
3366 3877 5.178809 AGCGTAAAGAACAAAATTAGCGAGT 59.821 36.000 0.00 0.00 0.00 4.18
3390 3901 3.071023 CCGAGCCATCCCTATCTAAACAA 59.929 47.826 0.00 0.00 0.00 2.83
3762 4275 4.931661 AGTGTCAAACTTAGAACCTCGA 57.068 40.909 0.00 0.00 34.57 4.04
3784 4305 5.630121 ACATTCATTAACTGACTGGGTTCA 58.370 37.500 8.80 0.00 38.51 3.18
3800 4321 8.385491 TGTAAGAATGCCCAGATATACATTCAT 58.615 33.333 14.81 7.27 46.90 2.57
3878 4399 4.183865 TGAAACGGTGAGAGATGCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
3895 4416 3.057946 GCATGGAGAACAGAACCTGAAAC 60.058 47.826 0.45 0.00 35.18 2.78
3897 4418 2.373169 AGCATGGAGAACAGAACCTGAA 59.627 45.455 0.45 0.00 35.18 3.02
3954 4475 3.370953 GGGAGATGTGTCAGGTAAGCAAT 60.371 47.826 0.00 0.00 0.00 3.56
3957 4478 1.555075 TGGGAGATGTGTCAGGTAAGC 59.445 52.381 0.00 0.00 0.00 3.09
3988 4509 1.683385 GGAAATACCAAGGGCATCTGC 59.317 52.381 0.00 0.00 38.79 4.26
3989 4510 3.217626 GAGGAAATACCAAGGGCATCTG 58.782 50.000 0.00 0.00 42.04 2.90
3990 4511 2.158755 CGAGGAAATACCAAGGGCATCT 60.159 50.000 0.00 0.00 42.04 2.90
3991 4512 2.158813 TCGAGGAAATACCAAGGGCATC 60.159 50.000 0.00 0.00 42.04 3.91
3992 4513 1.843851 TCGAGGAAATACCAAGGGCAT 59.156 47.619 0.00 0.00 42.04 4.40
4035 4559 3.382803 GAGCATGTCCGAGCTGGCT 62.383 63.158 0.00 0.00 42.04 4.75
4044 4568 1.680249 GGAGTGAAAGGGAGCATGTCC 60.680 57.143 5.94 5.94 46.10 4.02
4047 4571 0.622665 AGGGAGTGAAAGGGAGCATG 59.377 55.000 0.00 0.00 0.00 4.06
4060 4584 4.332543 TTCAGGGGGCGAGGGAGT 62.333 66.667 0.00 0.00 0.00 3.85
4066 4590 2.852075 ACAAGGTTCAGGGGGCGA 60.852 61.111 0.00 0.00 0.00 5.54
4069 4593 2.283173 GCCACAAGGTTCAGGGGG 60.283 66.667 0.00 0.00 37.19 5.40
4073 4597 0.599558 CATGTGGCCACAAGGTTCAG 59.400 55.000 40.48 20.06 45.41 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.