Multiple sequence alignment - TraesCS3A01G393300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G393300 chr3A 100.000 3494 0 0 1 3494 641173356 641169863 0.000000e+00 6453.0
1 TraesCS3A01G393300 chr3A 93.291 1580 63 16 933 2509 641638846 641640385 0.000000e+00 2290.0
2 TraesCS3A01G393300 chr3A 89.434 265 28 0 603 867 12408996 12408732 5.590000e-88 335.0
3 TraesCS3A01G393300 chr3B 95.928 1621 60 3 871 2489 663086710 663085094 0.000000e+00 2623.0
4 TraesCS3A01G393300 chr3B 91.439 1647 114 18 879 2509 663037630 663039265 0.000000e+00 2235.0
5 TraesCS3A01G393300 chr3B 90.726 744 50 11 2561 3299 663039618 663040347 0.000000e+00 974.0
6 TraesCS3A01G393300 chr3B 95.486 288 9 3 1 288 663087497 663087214 1.140000e-124 457.0
7 TraesCS3A01G393300 chr3B 92.623 244 13 2 287 525 663087053 663086810 2.580000e-91 346.0
8 TraesCS3A01G393300 chr3B 79.221 154 22 3 3147 3299 396272030 396271886 7.980000e-17 99.0
9 TraesCS3A01G393300 chr3D 95.446 1625 70 2 865 2489 501790863 501789243 0.000000e+00 2588.0
10 TraesCS3A01G393300 chr3D 90.161 1799 136 30 876 2654 501478870 501477093 0.000000e+00 2303.0
11 TraesCS3A01G393300 chr3D 91.160 1629 118 18 876 2489 501513134 501511517 0.000000e+00 2187.0
12 TraesCS3A01G393300 chr3D 94.350 531 24 3 1 525 501791474 501790944 0.000000e+00 809.0
13 TraesCS3A01G393300 chr3D 88.727 550 49 9 2656 3200 501476952 501476411 0.000000e+00 660.0
14 TraesCS3A01G393300 chr3D 89.394 264 28 0 603 866 87391736 87391999 2.010000e-87 333.0
15 TraesCS3A01G393300 chr3D 92.771 166 12 0 3301 3466 2148560 2148725 1.250000e-59 241.0
16 TraesCS3A01G393300 chr3D 79.221 154 22 3 3147 3299 322435443 322435299 7.980000e-17 99.0
17 TraesCS3A01G393300 chr6D 83.471 1458 226 12 1024 2478 5942424 5940979 0.000000e+00 1343.0
18 TraesCS3A01G393300 chr6D 91.813 171 13 1 3305 3474 2150631 2150801 1.620000e-58 237.0
19 TraesCS3A01G393300 chr6D 81.188 101 12 7 3265 3361 194248185 194248282 1.350000e-09 75.0
20 TraesCS3A01G393300 chr7D 82.456 1482 227 23 1025 2489 40033365 40031900 0.000000e+00 1266.0
21 TraesCS3A01G393300 chr7D 88.809 277 28 3 602 875 588415097 588414821 1.550000e-88 337.0
22 TraesCS3A01G393300 chr7D 92.308 169 13 0 3299 3467 94123053 94122885 1.250000e-59 241.0
23 TraesCS3A01G393300 chr7D 82.581 155 17 5 3147 3300 220642752 220642607 1.020000e-25 128.0
24 TraesCS3A01G393300 chr7D 91.667 48 4 0 3149 3196 376090374 376090421 2.250000e-07 67.6
25 TraesCS3A01G393300 chr6B 81.781 1460 247 15 1024 2478 11246689 11245244 0.000000e+00 1205.0
26 TraesCS3A01G393300 chr1D 89.394 264 27 1 603 866 17161223 17161485 7.230000e-87 331.0
27 TraesCS3A01G393300 chr1D 80.645 155 17 5 3147 3299 7349705 7349848 1.330000e-19 108.0
28 TraesCS3A01G393300 chr1B 89.394 264 27 1 603 866 676806285 676806023 7.230000e-87 331.0
29 TraesCS3A01G393300 chr1B 86.528 193 19 5 3278 3466 412897602 412897413 4.570000e-49 206.0
30 TraesCS3A01G393300 chr1B 86.538 104 13 1 3197 3299 497473289 497473186 2.850000e-21 113.0
31 TraesCS3A01G393300 chr4A 88.192 271 30 2 596 866 121496006 121496274 4.350000e-84 322.0
32 TraesCS3A01G393300 chr4A 88.148 270 32 0 599 868 659211009 659211278 4.350000e-84 322.0
33 TraesCS3A01G393300 chr4A 81.169 154 19 3 3147 3299 109850056 109850200 7.930000e-22 115.0
34 TraesCS3A01G393300 chr6A 87.636 275 34 0 601 875 70956868 70956594 1.560000e-83 320.0
35 TraesCS3A01G393300 chr5D 87.726 277 31 3 603 876 524495508 524495784 1.560000e-83 320.0
36 TraesCS3A01G393300 chr5D 81.818 110 11 2 3147 3255 93064625 93064524 2.230000e-12 84.2
37 TraesCS3A01G393300 chr2A 93.827 162 10 0 3305 3466 189020998 189020837 9.690000e-61 244.0
38 TraesCS3A01G393300 chr2A 92.814 167 11 1 3300 3466 668451516 668451681 1.250000e-59 241.0
39 TraesCS3A01G393300 chr2A 85.938 64 5 4 3147 3209 15032924 15032864 8.100000e-07 65.8
40 TraesCS3A01G393300 chr4D 92.771 166 12 0 3305 3470 484111764 484111929 1.250000e-59 241.0
41 TraesCS3A01G393300 chr4D 81.119 143 13 6 3147 3286 170225903 170226034 6.170000e-18 102.0
42 TraesCS3A01G393300 chr1A 92.771 166 12 0 3299 3464 247338853 247339018 1.250000e-59 241.0
43 TraesCS3A01G393300 chr2D 92.262 168 13 0 3301 3468 2261825 2261992 4.510000e-59 239.0
44 TraesCS3A01G393300 chr7B 92.262 168 12 1 3302 3468 411745441 411745274 1.620000e-58 237.0
45 TraesCS3A01G393300 chr7B 81.290 155 16 4 3147 3299 211374195 211374052 2.850000e-21 113.0
46 TraesCS3A01G393300 chr5A 83.117 154 17 2 3147 3299 283308702 283308557 7.870000e-27 132.0
47 TraesCS3A01G393300 chr5A 83.108 148 16 4 3153 3299 556687528 556687389 3.660000e-25 126.0
48 TraesCS3A01G393300 chr5A 81.366 161 19 4 3141 3299 86662177 86662026 1.700000e-23 121.0
49 TraesCS3A01G393300 chr4B 75.926 216 44 7 3197 3408 78607659 78607870 1.720000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G393300 chr3A 641169863 641173356 3493 True 6453.0 6453 100.0000 1 3494 1 chr3A.!!$R2 3493
1 TraesCS3A01G393300 chr3A 641638846 641640385 1539 False 2290.0 2290 93.2910 933 2509 1 chr3A.!!$F1 1576
2 TraesCS3A01G393300 chr3B 663037630 663040347 2717 False 1604.5 2235 91.0825 879 3299 2 chr3B.!!$F1 2420
3 TraesCS3A01G393300 chr3B 663085094 663087497 2403 True 1142.0 2623 94.6790 1 2489 3 chr3B.!!$R2 2488
4 TraesCS3A01G393300 chr3D 501511517 501513134 1617 True 2187.0 2187 91.1600 876 2489 1 chr3D.!!$R2 1613
5 TraesCS3A01G393300 chr3D 501789243 501791474 2231 True 1698.5 2588 94.8980 1 2489 2 chr3D.!!$R4 2488
6 TraesCS3A01G393300 chr3D 501476411 501478870 2459 True 1481.5 2303 89.4440 876 3200 2 chr3D.!!$R3 2324
7 TraesCS3A01G393300 chr6D 5940979 5942424 1445 True 1343.0 1343 83.4710 1024 2478 1 chr6D.!!$R1 1454
8 TraesCS3A01G393300 chr7D 40031900 40033365 1465 True 1266.0 1266 82.4560 1025 2489 1 chr7D.!!$R1 1464
9 TraesCS3A01G393300 chr6B 11245244 11246689 1445 True 1205.0 1205 81.7810 1024 2478 1 chr6B.!!$R1 1454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 804 0.035458 ACTCCCTCCGTGCTTGAAAG 59.965 55.0 0.0 0.0 0.0 2.62 F
625 807 0.035458 CCCTCCGTGCTTGAAAGAGT 59.965 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2436 2655 0.532862 CAAGCTCCCACGTGTCTTGT 60.533 55.0 15.65 0.0 31.99 3.16 R
2614 3171 1.045407 TACGTTGTGGCTCTGTTCCT 58.955 50.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 8.723311 CCTATGGACGTTACATTTTCAAGTAAA 58.277 33.333 11.21 0.00 32.55 2.01
105 107 7.920160 TCAAACTTTTGAAAGAGGCAAATTT 57.080 28.000 10.26 0.00 43.62 1.82
227 229 0.107831 GTGGGTGTTAGACAGTGGCA 59.892 55.000 0.00 0.00 0.00 4.92
351 520 5.038033 TGTCAACGTCTTGGCAAAAATAAC 58.962 37.500 0.00 0.00 39.10 1.89
354 523 2.879646 ACGTCTTGGCAAAAATAACGGA 59.120 40.909 17.11 1.83 33.26 4.69
454 623 6.821665 GGCTATGATCTGGTTGTTGTTAACTA 59.178 38.462 7.22 0.00 0.00 2.24
468 637 7.161404 TGTTGTTAACTAGATCTGTGCTCAAT 58.839 34.615 5.18 0.00 0.00 2.57
469 638 7.118245 TGTTGTTAACTAGATCTGTGCTCAATG 59.882 37.037 5.18 0.00 0.00 2.82
525 694 0.609957 CAGATCAGCCTGGCAACCAA 60.610 55.000 22.65 1.02 30.80 3.67
526 695 0.333993 AGATCAGCCTGGCAACCAAT 59.666 50.000 22.65 6.23 30.80 3.16
528 697 0.333993 ATCAGCCTGGCAACCAATCT 59.666 50.000 22.65 0.00 30.80 2.40
530 699 1.065199 TCAGCCTGGCAACCAATCTAG 60.065 52.381 22.65 0.00 30.80 2.43
531 700 1.065199 CAGCCTGGCAACCAATCTAGA 60.065 52.381 22.65 0.00 30.80 2.43
532 701 1.849039 AGCCTGGCAACCAATCTAGAT 59.151 47.619 22.65 0.00 30.80 1.98
536 705 4.747931 GCCTGGCAACCAATCTAGATATGT 60.748 45.833 15.17 3.46 30.80 2.29
537 706 4.758674 CCTGGCAACCAATCTAGATATGTG 59.241 45.833 5.46 0.57 30.80 3.21
539 708 5.125356 TGGCAACCAATCTAGATATGTGTG 58.875 41.667 5.46 0.00 0.00 3.82
542 711 6.072838 GGCAACCAATCTAGATATGTGTGATG 60.073 42.308 5.46 4.63 0.00 3.07
543 712 6.484643 GCAACCAATCTAGATATGTGTGATGT 59.515 38.462 5.46 0.00 0.00 3.06
544 713 7.012704 GCAACCAATCTAGATATGTGTGATGTT 59.987 37.037 5.46 0.00 0.00 2.71
545 714 9.546428 CAACCAATCTAGATATGTGTGATGTTA 57.454 33.333 5.46 0.00 0.00 2.41
550 719 8.783833 ATCTAGATATGTGTGATGTTATTGCC 57.216 34.615 2.53 0.00 0.00 4.52
551 720 7.966812 TCTAGATATGTGTGATGTTATTGCCT 58.033 34.615 0.00 0.00 0.00 4.75
554 723 8.557592 AGATATGTGTGATGTTATTGCCTATG 57.442 34.615 0.00 0.00 0.00 2.23
556 725 8.696043 ATATGTGTGATGTTATTGCCTATGTT 57.304 30.769 0.00 0.00 0.00 2.71
557 726 9.791801 ATATGTGTGATGTTATTGCCTATGTTA 57.208 29.630 0.00 0.00 0.00 2.41
558 727 7.315247 TGTGTGATGTTATTGCCTATGTTAC 57.685 36.000 0.00 0.00 0.00 2.50
559 728 7.109501 TGTGTGATGTTATTGCCTATGTTACT 58.890 34.615 0.00 0.00 0.00 2.24
560 729 7.609918 TGTGTGATGTTATTGCCTATGTTACTT 59.390 33.333 0.00 0.00 0.00 2.24
562 731 8.673711 TGTGATGTTATTGCCTATGTTACTTTC 58.326 33.333 0.00 0.00 0.00 2.62
563 732 8.673711 GTGATGTTATTGCCTATGTTACTTTCA 58.326 33.333 0.00 0.00 0.00 2.69
564 733 9.407380 TGATGTTATTGCCTATGTTACTTTCAT 57.593 29.630 0.00 0.00 0.00 2.57
570 739 7.624360 TTGCCTATGTTACTTTCATTGTAGG 57.376 36.000 0.00 0.00 0.00 3.18
571 740 6.717289 TGCCTATGTTACTTTCATTGTAGGT 58.283 36.000 0.00 0.00 0.00 3.08
572 741 7.853299 TGCCTATGTTACTTTCATTGTAGGTA 58.147 34.615 0.00 0.00 0.00 3.08
573 742 7.985184 TGCCTATGTTACTTTCATTGTAGGTAG 59.015 37.037 0.00 0.00 0.00 3.18
574 743 8.202137 GCCTATGTTACTTTCATTGTAGGTAGA 58.798 37.037 0.00 0.00 0.00 2.59
575 744 9.530633 CCTATGTTACTTTCATTGTAGGTAGAC 57.469 37.037 0.00 0.00 0.00 2.59
579 748 9.918630 TGTTACTTTCATTGTAGGTAGACTTAC 57.081 33.333 0.00 0.00 0.00 2.34
580 749 9.070149 GTTACTTTCATTGTAGGTAGACTTACG 57.930 37.037 0.00 0.00 31.86 3.18
582 751 4.644103 TCATTGTAGGTAGACTTACGGC 57.356 45.455 0.00 0.00 31.86 5.68
584 753 2.814805 TGTAGGTAGACTTACGGCCT 57.185 50.000 0.00 0.00 31.86 5.19
585 754 3.091633 TGTAGGTAGACTTACGGCCTT 57.908 47.619 0.00 0.00 31.86 4.35
586 755 3.434309 TGTAGGTAGACTTACGGCCTTT 58.566 45.455 0.00 0.00 31.86 3.11
587 756 3.834231 TGTAGGTAGACTTACGGCCTTTT 59.166 43.478 0.00 0.00 31.86 2.27
589 758 3.671716 AGGTAGACTTACGGCCTTTTTG 58.328 45.455 0.00 0.00 0.00 2.44
590 759 2.745821 GGTAGACTTACGGCCTTTTTGG 59.254 50.000 0.00 0.00 39.35 3.28
606 788 5.391629 CCTTTTTGGCGGATAACAACTACTC 60.392 44.000 0.00 0.00 0.00 2.59
607 789 2.973694 TGGCGGATAACAACTACTCC 57.026 50.000 0.00 0.00 0.00 3.85
608 790 1.483415 TGGCGGATAACAACTACTCCC 59.517 52.381 0.00 0.00 0.00 4.30
609 791 1.761198 GGCGGATAACAACTACTCCCT 59.239 52.381 0.00 0.00 0.00 4.20
610 792 2.223994 GGCGGATAACAACTACTCCCTC 60.224 54.545 0.00 0.00 0.00 4.30
611 793 2.223994 GCGGATAACAACTACTCCCTCC 60.224 54.545 0.00 0.00 0.00 4.30
612 794 2.034305 CGGATAACAACTACTCCCTCCG 59.966 54.545 0.00 0.00 38.51 4.63
613 795 3.029570 GGATAACAACTACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
614 796 3.181478 GGATAACAACTACTCCCTCCGTG 60.181 52.174 0.00 0.00 0.00 4.94
615 797 0.320697 AACAACTACTCCCTCCGTGC 59.679 55.000 0.00 0.00 0.00 5.34
616 798 0.542232 ACAACTACTCCCTCCGTGCT 60.542 55.000 0.00 0.00 0.00 4.40
617 799 0.608640 CAACTACTCCCTCCGTGCTT 59.391 55.000 0.00 0.00 0.00 3.91
618 800 0.608640 AACTACTCCCTCCGTGCTTG 59.391 55.000 0.00 0.00 0.00 4.01
619 801 0.251653 ACTACTCCCTCCGTGCTTGA 60.252 55.000 0.00 0.00 0.00 3.02
620 802 0.895530 CTACTCCCTCCGTGCTTGAA 59.104 55.000 0.00 0.00 0.00 2.69
621 803 1.275291 CTACTCCCTCCGTGCTTGAAA 59.725 52.381 0.00 0.00 0.00 2.69
622 804 0.035458 ACTCCCTCCGTGCTTGAAAG 59.965 55.000 0.00 0.00 0.00 2.62
623 805 0.321671 CTCCCTCCGTGCTTGAAAGA 59.678 55.000 0.00 0.00 0.00 2.52
624 806 0.321671 TCCCTCCGTGCTTGAAAGAG 59.678 55.000 0.00 0.00 0.00 2.85
625 807 0.035458 CCCTCCGTGCTTGAAAGAGT 59.965 55.000 0.00 0.00 0.00 3.24
626 808 1.151668 CCTCCGTGCTTGAAAGAGTG 58.848 55.000 0.00 0.00 0.00 3.51
627 809 1.541233 CCTCCGTGCTTGAAAGAGTGT 60.541 52.381 0.00 0.00 0.00 3.55
628 810 2.288825 CCTCCGTGCTTGAAAGAGTGTA 60.289 50.000 0.00 0.00 0.00 2.90
629 811 2.731976 CTCCGTGCTTGAAAGAGTGTAC 59.268 50.000 0.00 0.00 0.00 2.90
630 812 2.364324 TCCGTGCTTGAAAGAGTGTACT 59.636 45.455 0.00 0.00 0.00 2.73
631 813 3.131396 CCGTGCTTGAAAGAGTGTACTT 58.869 45.455 0.00 0.00 0.00 2.24
632 814 3.184581 CCGTGCTTGAAAGAGTGTACTTC 59.815 47.826 0.00 0.00 0.00 3.01
633 815 4.051922 CGTGCTTGAAAGAGTGTACTTCT 58.948 43.478 0.00 0.00 0.00 2.85
634 816 5.220381 CGTGCTTGAAAGAGTGTACTTCTA 58.780 41.667 0.00 0.00 0.00 2.10
635 817 5.690409 CGTGCTTGAAAGAGTGTACTTCTAA 59.310 40.000 0.00 0.00 0.00 2.10
636 818 6.345882 CGTGCTTGAAAGAGTGTACTTCTAAC 60.346 42.308 0.00 0.00 0.00 2.34
637 819 6.479001 GTGCTTGAAAGAGTGTACTTCTAACA 59.521 38.462 0.00 0.00 0.00 2.41
638 820 7.011109 GTGCTTGAAAGAGTGTACTTCTAACAA 59.989 37.037 0.00 6.90 0.00 2.83
639 821 7.551262 TGCTTGAAAGAGTGTACTTCTAACAAA 59.449 33.333 0.00 0.00 0.00 2.83
640 822 8.064814 GCTTGAAAGAGTGTACTTCTAACAAAG 58.935 37.037 0.00 2.56 0.00 2.77
641 823 9.099454 CTTGAAAGAGTGTACTTCTAACAAAGT 57.901 33.333 0.00 0.00 42.10 2.66
642 824 9.444600 TTGAAAGAGTGTACTTCTAACAAAGTT 57.555 29.630 0.00 0.00 40.01 2.66
643 825 8.879759 TGAAAGAGTGTACTTCTAACAAAGTTG 58.120 33.333 0.00 0.00 40.01 3.16
644 826 7.787725 AAGAGTGTACTTCTAACAAAGTTGG 57.212 36.000 0.00 0.00 40.01 3.77
645 827 7.120923 AGAGTGTACTTCTAACAAAGTTGGA 57.879 36.000 0.00 0.00 40.01 3.53
646 828 7.210873 AGAGTGTACTTCTAACAAAGTTGGAG 58.789 38.462 0.00 0.00 40.01 3.86
647 829 6.289064 AGTGTACTTCTAACAAAGTTGGAGG 58.711 40.000 4.31 4.31 40.01 4.30
648 830 5.469084 GTGTACTTCTAACAAAGTTGGAGGG 59.531 44.000 9.45 4.41 40.01 4.30
649 831 4.790718 ACTTCTAACAAAGTTGGAGGGT 57.209 40.909 9.45 4.89 36.02 4.34
650 832 4.715713 ACTTCTAACAAAGTTGGAGGGTC 58.284 43.478 9.45 0.00 36.02 4.46
651 833 4.165372 ACTTCTAACAAAGTTGGAGGGTCA 59.835 41.667 9.45 0.00 36.02 4.02
652 834 4.781775 TCTAACAAAGTTGGAGGGTCAA 57.218 40.909 0.00 0.00 0.00 3.18
653 835 5.118729 TCTAACAAAGTTGGAGGGTCAAA 57.881 39.130 0.00 0.00 0.00 2.69
654 836 5.701224 TCTAACAAAGTTGGAGGGTCAAAT 58.299 37.500 0.00 0.00 0.00 2.32
655 837 6.133356 TCTAACAAAGTTGGAGGGTCAAATT 58.867 36.000 0.00 0.00 36.65 1.82
656 838 7.291566 TCTAACAAAGTTGGAGGGTCAAATTA 58.708 34.615 0.00 0.00 34.45 1.40
657 839 6.994421 AACAAAGTTGGAGGGTCAAATTAT 57.006 33.333 0.00 0.00 34.45 1.28
658 840 6.590234 ACAAAGTTGGAGGGTCAAATTATC 57.410 37.500 0.00 0.00 34.45 1.75
659 841 6.314917 ACAAAGTTGGAGGGTCAAATTATCT 58.685 36.000 0.00 0.00 34.45 1.98
660 842 6.782494 ACAAAGTTGGAGGGTCAAATTATCTT 59.218 34.615 0.00 0.00 34.45 2.40
661 843 7.947890 ACAAAGTTGGAGGGTCAAATTATCTTA 59.052 33.333 0.00 0.00 34.45 2.10
662 844 8.802267 CAAAGTTGGAGGGTCAAATTATCTTAA 58.198 33.333 0.00 0.00 34.45 1.85
663 845 8.950007 AAGTTGGAGGGTCAAATTATCTTAAA 57.050 30.769 0.00 0.00 33.90 1.52
664 846 8.581253 AGTTGGAGGGTCAAATTATCTTAAAG 57.419 34.615 0.00 0.00 0.00 1.85
665 847 8.170730 AGTTGGAGGGTCAAATTATCTTAAAGT 58.829 33.333 0.00 0.00 0.00 2.66
666 848 8.803235 GTTGGAGGGTCAAATTATCTTAAAGTT 58.197 33.333 0.00 0.00 0.00 2.66
667 849 8.950007 TGGAGGGTCAAATTATCTTAAAGTTT 57.050 30.769 0.00 0.00 0.00 2.66
668 850 8.802267 TGGAGGGTCAAATTATCTTAAAGTTTG 58.198 33.333 0.00 0.00 0.00 2.93
669 851 9.020731 GGAGGGTCAAATTATCTTAAAGTTTGA 57.979 33.333 0.00 0.00 36.69 2.69
714 896 9.874205 ATATCAATGTTTGTGAAACCAAATAGG 57.126 29.630 0.00 0.00 40.67 2.57
820 1002 7.817418 TGGTCAAACATAAAAGAGTTTAGCT 57.183 32.000 0.00 0.00 36.28 3.32
821 1003 8.232913 TGGTCAAACATAAAAGAGTTTAGCTT 57.767 30.769 0.00 0.00 36.28 3.74
822 1004 8.691797 TGGTCAAACATAAAAGAGTTTAGCTTT 58.308 29.630 0.00 0.00 36.28 3.51
823 1005 9.181805 GGTCAAACATAAAAGAGTTTAGCTTTC 57.818 33.333 0.00 0.00 36.28 2.62
824 1006 9.181805 GTCAAACATAAAAGAGTTTAGCTTTCC 57.818 33.333 0.00 0.00 36.28 3.13
825 1007 8.908903 TCAAACATAAAAGAGTTTAGCTTTCCA 58.091 29.630 0.00 0.00 36.28 3.53
826 1008 9.528018 CAAACATAAAAGAGTTTAGCTTTCCAA 57.472 29.630 0.00 0.00 36.28 3.53
827 1009 9.529325 AAACATAAAAGAGTTTAGCTTTCCAAC 57.471 29.630 0.00 0.00 36.28 3.77
828 1010 8.232913 ACATAAAAGAGTTTAGCTTTCCAACA 57.767 30.769 0.00 0.00 34.68 3.33
829 1011 8.691797 ACATAAAAGAGTTTAGCTTTCCAACAA 58.308 29.630 0.00 0.00 34.68 2.83
830 1012 9.528018 CATAAAAGAGTTTAGCTTTCCAACAAA 57.472 29.630 0.00 0.00 34.68 2.83
831 1013 9.750125 ATAAAAGAGTTTAGCTTTCCAACAAAG 57.250 29.630 0.00 0.00 34.68 2.77
832 1014 6.775594 AAGAGTTTAGCTTTCCAACAAAGT 57.224 33.333 0.00 0.00 0.00 2.66
833 1015 6.775594 AGAGTTTAGCTTTCCAACAAAGTT 57.224 33.333 0.00 0.00 0.00 2.66
834 1016 6.564328 AGAGTTTAGCTTTCCAACAAAGTTG 58.436 36.000 0.00 3.00 0.00 3.16
835 1017 6.377146 AGAGTTTAGCTTTCCAACAAAGTTGA 59.623 34.615 11.19 0.00 0.00 3.18
836 1018 6.930731 AGTTTAGCTTTCCAACAAAGTTGAA 58.069 32.000 11.19 2.01 0.00 2.69
837 1019 7.382898 AGTTTAGCTTTCCAACAAAGTTGAAA 58.617 30.769 11.19 8.66 0.00 2.69
838 1020 7.545615 AGTTTAGCTTTCCAACAAAGTTGAAAG 59.454 33.333 19.08 19.08 34.06 2.62
839 1021 5.405935 AGCTTTCCAACAAAGTTGAAAGT 57.594 34.783 21.48 13.39 33.63 2.66
840 1022 6.524101 AGCTTTCCAACAAAGTTGAAAGTA 57.476 33.333 21.48 0.00 33.63 2.24
841 1023 7.112452 AGCTTTCCAACAAAGTTGAAAGTAT 57.888 32.000 21.48 14.60 33.63 2.12
842 1024 8.232913 AGCTTTCCAACAAAGTTGAAAGTATA 57.767 30.769 21.48 0.00 33.63 1.47
843 1025 8.135529 AGCTTTCCAACAAAGTTGAAAGTATAC 58.864 33.333 21.48 0.00 33.63 1.47
844 1026 7.381408 GCTTTCCAACAAAGTTGAAAGTATACC 59.619 37.037 21.48 10.98 33.63 2.73
845 1027 6.887626 TCCAACAAAGTTGAAAGTATACCC 57.112 37.500 11.19 0.00 0.00 3.69
846 1028 6.607019 TCCAACAAAGTTGAAAGTATACCCT 58.393 36.000 11.19 0.00 0.00 4.34
847 1029 7.064229 TCCAACAAAGTTGAAAGTATACCCTT 58.936 34.615 11.19 0.00 0.00 3.95
848 1030 7.229907 TCCAACAAAGTTGAAAGTATACCCTTC 59.770 37.037 11.19 3.98 0.00 3.46
849 1031 7.368059 CAACAAAGTTGAAAGTATACCCTTCC 58.632 38.462 3.91 0.55 0.00 3.46
850 1032 6.607019 ACAAAGTTGAAAGTATACCCTTCCA 58.393 36.000 11.06 0.70 0.00 3.53
851 1033 7.064229 ACAAAGTTGAAAGTATACCCTTCCAA 58.936 34.615 11.06 2.65 0.00 3.53
852 1034 7.230712 ACAAAGTTGAAAGTATACCCTTCCAAG 59.769 37.037 11.06 0.00 0.00 3.61
853 1035 5.816682 AGTTGAAAGTATACCCTTCCAAGG 58.183 41.667 11.06 0.00 46.06 3.61
864 1046 1.650528 CTTCCAAGGACAGAGGGAGT 58.349 55.000 0.00 0.00 0.00 3.85
865 1047 2.821437 CTTCCAAGGACAGAGGGAGTA 58.179 52.381 0.00 0.00 0.00 2.59
866 1048 2.233305 TCCAAGGACAGAGGGAGTAC 57.767 55.000 0.00 0.00 0.00 2.73
867 1049 1.717077 TCCAAGGACAGAGGGAGTACT 59.283 52.381 0.00 0.00 0.00 2.73
902 1089 2.509052 ATACACGATGCGCACAGTAT 57.491 45.000 14.90 15.47 0.00 2.12
992 1194 2.432456 CCGCAAGCGCAGACACTA 60.432 61.111 11.47 0.00 38.40 2.74
993 1195 2.730672 CCGCAAGCGCAGACACTAC 61.731 63.158 11.47 0.00 38.40 2.73
1038 1241 0.504384 CATTTGACGCGCTATCCTCG 59.496 55.000 5.73 0.00 0.00 4.63
1414 1617 1.300963 GACTGGATGGGCAAGCTGA 59.699 57.895 0.00 0.00 0.00 4.26
1443 1646 1.518302 GGACCGCTTCCTCTTCTCC 59.482 63.158 0.00 0.00 41.95 3.71
1444 1647 1.139947 GACCGCTTCCTCTTCTCCG 59.860 63.158 0.00 0.00 0.00 4.63
1445 1648 2.286127 GACCGCTTCCTCTTCTCCGG 62.286 65.000 0.00 0.00 41.31 5.14
2040 2247 0.681733 ACCTCAGCAACGTCACAGAT 59.318 50.000 0.00 0.00 0.00 2.90
2042 2249 1.073964 CTCAGCAACGTCACAGATGG 58.926 55.000 0.00 0.00 0.00 3.51
2049 2256 1.807165 CGTCACAGATGGAGGTGCG 60.807 63.158 0.00 0.00 35.04 5.34
2509 2728 1.749334 CTAGGACTCCGGGCATGACC 61.749 65.000 7.86 7.86 37.93 4.02
2517 2736 4.796495 GGGCATGACCGTCACCCC 62.796 72.222 18.56 18.56 40.62 4.95
2518 2737 3.717294 GGCATGACCGTCACCCCT 61.717 66.667 2.57 0.00 0.00 4.79
2519 2738 2.125106 GCATGACCGTCACCCCTC 60.125 66.667 2.57 0.00 0.00 4.30
2520 2739 2.184322 CATGACCGTCACCCCTCG 59.816 66.667 2.57 0.00 0.00 4.63
2521 2740 2.036731 ATGACCGTCACCCCTCGA 59.963 61.111 2.57 0.00 0.00 4.04
2522 2741 1.381327 ATGACCGTCACCCCTCGAT 60.381 57.895 2.57 0.00 0.00 3.59
2523 2742 1.676678 ATGACCGTCACCCCTCGATG 61.677 60.000 2.57 0.00 0.00 3.84
2524 2743 3.718210 GACCGTCACCCCTCGATGC 62.718 68.421 0.00 0.00 0.00 3.91
2525 2744 4.873129 CCGTCACCCCTCGATGCG 62.873 72.222 0.00 0.00 0.00 4.73
2526 2745 3.822192 CGTCACCCCTCGATGCGA 61.822 66.667 0.00 0.00 0.00 5.10
2541 2760 4.368808 CGAGCCACAACGCAACGG 62.369 66.667 0.00 0.00 0.00 4.44
2542 2761 3.276846 GAGCCACAACGCAACGGT 61.277 61.111 0.00 0.00 0.00 4.83
2623 3180 0.895530 TGCGGGTAAGAGGAACAGAG 59.104 55.000 0.00 0.00 0.00 3.35
2632 3189 0.249911 GAGGAACAGAGCCACAACGT 60.250 55.000 0.00 0.00 0.00 3.99
2641 3198 4.024048 ACAGAGCCACAACGTAAAATGAAG 60.024 41.667 0.00 0.00 0.00 3.02
2643 3200 4.452455 AGAGCCACAACGTAAAATGAAGAG 59.548 41.667 0.00 0.00 0.00 2.85
2686 3381 9.793252 CATGAAGAACCCTATAAAATTGTCAAG 57.207 33.333 0.00 0.00 0.00 3.02
2688 3383 7.669722 TGAAGAACCCTATAAAATTGTCAAGCT 59.330 33.333 0.00 0.00 0.00 3.74
2694 3389 8.052748 ACCCTATAAAATTGTCAAGCTGTATCA 58.947 33.333 0.00 0.00 0.00 2.15
2846 3541 7.556733 ACAAATTTCAGTTTGATGCAACAAT 57.443 28.000 10.44 0.00 40.64 2.71
2917 3613 0.387112 TTTGCGTATTGTGCAGCAGC 60.387 50.000 0.00 0.00 44.28 5.25
2933 3629 3.059834 CAGCAGCGCAATTGTTTTATCAC 59.940 43.478 11.47 0.00 0.00 3.06
2961 3657 9.767684 GTTTATTTCAACTTTTTCCCAAGTTTG 57.232 29.630 0.00 0.00 43.17 2.93
3077 3776 6.827586 TTGTTTTTCAGGTGTTTCTAGTGT 57.172 33.333 0.00 0.00 0.00 3.55
3078 3777 6.827586 TGTTTTTCAGGTGTTTCTAGTGTT 57.172 33.333 0.00 0.00 0.00 3.32
3120 3822 4.248859 TGTGTGAATTTTGGGTGTTTGTG 58.751 39.130 0.00 0.00 0.00 3.33
3130 3832 3.655486 TGGGTGTTTGTGAGTATACACG 58.345 45.455 5.50 0.00 42.86 4.49
3216 3919 6.546403 GGAGTTATGGACTACATACAGACTGA 59.454 42.308 10.08 0.00 41.61 3.41
3224 3927 6.754209 GGACTACATACAGACTGAAATGAGTG 59.246 42.308 21.47 14.86 0.00 3.51
3228 3931 5.635280 ACATACAGACTGAAATGAGTGAACG 59.365 40.000 21.47 0.00 0.00 3.95
3230 3933 2.061773 AGACTGAAATGAGTGAACGCG 58.938 47.619 3.53 3.53 0.00 6.01
3235 3938 2.473609 TGAAATGAGTGAACGCGTACAC 59.526 45.455 14.46 7.49 37.30 2.90
3236 3939 1.425412 AATGAGTGAACGCGTACACC 58.575 50.000 14.46 4.91 37.69 4.16
3243 3946 1.264557 TGAACGCGTACACCAAAATGG 59.735 47.619 14.46 0.00 45.02 3.16
3244 3947 1.532007 GAACGCGTACACCAAAATGGA 59.468 47.619 14.46 0.00 40.96 3.41
3245 3948 1.153353 ACGCGTACACCAAAATGGAG 58.847 50.000 11.67 0.00 40.96 3.86
3246 3949 1.153353 CGCGTACACCAAAATGGAGT 58.847 50.000 2.85 4.00 43.68 3.85
3247 3950 2.288948 ACGCGTACACCAAAATGGAGTA 60.289 45.455 11.67 2.96 39.57 2.59
3299 4003 7.782049 AGAACATCTTATGATAGTGAACGGAA 58.218 34.615 0.00 0.00 0.00 4.30
3300 4004 8.258007 AGAACATCTTATGATAGTGAACGGAAA 58.742 33.333 0.00 0.00 0.00 3.13
3301 4005 8.964476 AACATCTTATGATAGTGAACGGAAAT 57.036 30.769 0.00 0.00 0.00 2.17
3302 4006 8.964476 ACATCTTATGATAGTGAACGGAAATT 57.036 30.769 0.00 0.00 0.00 1.82
3310 4014 7.439381 TGATAGTGAACGGAAATTATACTCCC 58.561 38.462 0.00 0.00 0.00 4.30
3311 4015 5.952347 AGTGAACGGAAATTATACTCCCT 57.048 39.130 0.00 0.00 0.00 4.20
3312 4016 5.915175 AGTGAACGGAAATTATACTCCCTC 58.085 41.667 0.00 0.00 0.00 4.30
3313 4017 5.055144 GTGAACGGAAATTATACTCCCTCC 58.945 45.833 0.00 0.00 0.00 4.30
3316 4020 4.332428 CGGAAATTATACTCCCTCCGTT 57.668 45.455 3.34 0.00 40.67 4.44
3317 4021 4.304939 CGGAAATTATACTCCCTCCGTTC 58.695 47.826 3.34 0.00 40.67 3.95
3318 4022 4.639334 GGAAATTATACTCCCTCCGTTCC 58.361 47.826 0.00 0.00 0.00 3.62
3319 4023 4.347292 GGAAATTATACTCCCTCCGTTCCT 59.653 45.833 0.00 0.00 31.34 3.36
3320 4024 5.541484 GGAAATTATACTCCCTCCGTTCCTA 59.459 44.000 0.00 0.00 31.34 2.94
3321 4025 6.042437 GGAAATTATACTCCCTCCGTTCCTAA 59.958 42.308 0.00 0.00 31.34 2.69
3322 4026 7.419403 GGAAATTATACTCCCTCCGTTCCTAAA 60.419 40.741 0.00 0.00 31.34 1.85
3323 4027 7.628501 AATTATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
3324 4028 8.731591 AATTATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
3325 4029 8.912614 ATTATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
3327 4031 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
3328 4032 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3329 4033 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3330 4034 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3331 4035 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3332 4036 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3333 4037 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3334 4038 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3335 4039 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
3336 4040 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
3337 4041 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
3338 4042 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
3339 4043 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
3351 4055 7.595819 AGTCTTTGGAGAGATTCTACTATGG 57.404 40.000 0.00 0.00 31.07 2.74
3352 4056 7.358263 AGTCTTTGGAGAGATTCTACTATGGA 58.642 38.462 0.00 0.00 31.07 3.41
3353 4057 7.286775 AGTCTTTGGAGAGATTCTACTATGGAC 59.713 40.741 0.00 0.00 31.07 4.02
3354 4058 6.551601 TCTTTGGAGAGATTCTACTATGGACC 59.448 42.308 0.00 0.00 0.00 4.46
3355 4059 5.403558 TGGAGAGATTCTACTATGGACCA 57.596 43.478 0.00 0.00 0.00 4.02
3356 4060 5.141182 TGGAGAGATTCTACTATGGACCAC 58.859 45.833 0.00 0.00 0.00 4.16
3357 4061 5.141182 GGAGAGATTCTACTATGGACCACA 58.859 45.833 0.00 0.00 0.00 4.17
3358 4062 5.777732 GGAGAGATTCTACTATGGACCACAT 59.222 44.000 0.00 0.00 43.68 3.21
3359 4063 6.948886 GGAGAGATTCTACTATGGACCACATA 59.051 42.308 0.00 0.00 41.03 2.29
3360 4064 7.094118 GGAGAGATTCTACTATGGACCACATAC 60.094 44.444 0.00 0.00 41.03 2.39
3361 4065 7.298374 AGAGATTCTACTATGGACCACATACA 58.702 38.462 0.00 0.00 41.03 2.29
3362 4066 7.785028 AGAGATTCTACTATGGACCACATACAA 59.215 37.037 0.00 0.00 41.03 2.41
3363 4067 8.319057 AGATTCTACTATGGACCACATACAAA 57.681 34.615 0.00 0.00 41.03 2.83
3364 4068 8.424918 AGATTCTACTATGGACCACATACAAAG 58.575 37.037 0.00 0.00 41.03 2.77
3365 4069 5.914033 TCTACTATGGACCACATACAAAGC 58.086 41.667 0.00 0.00 41.03 3.51
3366 4070 4.568072 ACTATGGACCACATACAAAGCA 57.432 40.909 0.00 0.00 41.03 3.91
3367 4071 4.917385 ACTATGGACCACATACAAAGCAA 58.083 39.130 0.00 0.00 41.03 3.91
3368 4072 5.321102 ACTATGGACCACATACAAAGCAAA 58.679 37.500 0.00 0.00 41.03 3.68
3369 4073 5.772672 ACTATGGACCACATACAAAGCAAAA 59.227 36.000 0.00 0.00 41.03 2.44
3370 4074 5.743636 ATGGACCACATACAAAGCAAAAT 57.256 34.783 0.00 0.00 38.26 1.82
3371 4075 4.880759 TGGACCACATACAAAGCAAAATG 58.119 39.130 0.00 0.00 0.00 2.32
3372 4076 4.586421 TGGACCACATACAAAGCAAAATGA 59.414 37.500 0.00 0.00 0.00 2.57
3373 4077 5.163513 GGACCACATACAAAGCAAAATGAG 58.836 41.667 0.00 0.00 0.00 2.90
3374 4078 5.278957 GGACCACATACAAAGCAAAATGAGT 60.279 40.000 0.00 0.00 0.00 3.41
3375 4079 5.531634 ACCACATACAAAGCAAAATGAGTG 58.468 37.500 0.00 0.00 0.00 3.51
3376 4080 5.301551 ACCACATACAAAGCAAAATGAGTGA 59.698 36.000 0.00 0.00 0.00 3.41
3377 4081 6.183360 ACCACATACAAAGCAAAATGAGTGAA 60.183 34.615 0.00 0.00 0.00 3.18
3378 4082 6.869913 CCACATACAAAGCAAAATGAGTGAAT 59.130 34.615 0.00 0.00 0.00 2.57
3379 4083 7.062605 CCACATACAAAGCAAAATGAGTGAATC 59.937 37.037 0.00 0.00 0.00 2.52
3380 4084 7.811236 CACATACAAAGCAAAATGAGTGAATCT 59.189 33.333 0.00 0.00 0.00 2.40
3381 4085 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
3385 4089 9.236006 ACAAAGCAAAATGAGTGAATCTATACT 57.764 29.630 0.00 0.00 0.00 2.12
3386 4090 9.713740 CAAAGCAAAATGAGTGAATCTATACTC 57.286 33.333 0.00 0.00 42.77 2.59
3387 4091 9.678260 AAAGCAAAATGAGTGAATCTATACTCT 57.322 29.630 0.00 0.00 42.86 3.24
3409 4113 8.744652 ACTCTAAAATGGATCTAGATACATCCG 58.255 37.037 27.27 16.51 41.36 4.18
3410 4114 8.651589 TCTAAAATGGATCTAGATACATCCGT 57.348 34.615 27.27 18.13 41.36 4.69
3411 4115 9.749340 TCTAAAATGGATCTAGATACATCCGTA 57.251 33.333 27.27 18.25 41.36 4.02
3415 4119 7.962995 ATGGATCTAGATACATCCGTATGTT 57.037 36.000 22.74 0.52 44.07 2.71
3416 4120 7.158099 TGGATCTAGATACATCCGTATGTTG 57.842 40.000 14.00 0.00 44.07 3.33
3417 4121 6.719829 TGGATCTAGATACATCCGTATGTTGT 59.280 38.462 14.00 0.00 44.07 3.32
3418 4122 7.094334 TGGATCTAGATACATCCGTATGTTGTC 60.094 40.741 14.00 0.00 44.07 3.18
3419 4123 6.570672 TCTAGATACATCCGTATGTTGTCC 57.429 41.667 0.00 0.00 44.07 4.02
3420 4124 6.066032 TCTAGATACATCCGTATGTTGTCCA 58.934 40.000 0.00 0.00 44.07 4.02
3421 4125 5.808366 AGATACATCCGTATGTTGTCCAT 57.192 39.130 0.00 0.00 44.07 3.41
3422 4126 6.911250 AGATACATCCGTATGTTGTCCATA 57.089 37.500 0.00 0.00 44.07 2.74
3423 4127 6.925211 AGATACATCCGTATGTTGTCCATAG 58.075 40.000 0.00 0.00 44.07 2.23
3424 4128 6.493802 AGATACATCCGTATGTTGTCCATAGT 59.506 38.462 0.00 0.00 44.07 2.12
3425 4129 7.668469 AGATACATCCGTATGTTGTCCATAGTA 59.332 37.037 0.00 0.00 44.07 1.82
3426 4130 6.474140 ACATCCGTATGTTGTCCATAGTAA 57.526 37.500 0.00 0.00 44.07 2.24
3427 4131 6.880484 ACATCCGTATGTTGTCCATAGTAAA 58.120 36.000 0.00 0.00 44.07 2.01
3428 4132 7.332557 ACATCCGTATGTTGTCCATAGTAAAA 58.667 34.615 0.00 0.00 44.07 1.52
3429 4133 7.990886 ACATCCGTATGTTGTCCATAGTAAAAT 59.009 33.333 0.00 0.00 44.07 1.82
3430 4134 8.836413 CATCCGTATGTTGTCCATAGTAAAATT 58.164 33.333 0.00 0.00 36.71 1.82
3431 4135 8.795842 TCCGTATGTTGTCCATAGTAAAATTT 57.204 30.769 0.00 0.00 36.71 1.82
3432 4136 9.233649 TCCGTATGTTGTCCATAGTAAAATTTT 57.766 29.630 8.75 8.75 36.71 1.82
3433 4137 9.849166 CCGTATGTTGTCCATAGTAAAATTTTT 57.151 29.630 9.06 0.00 36.71 1.94
3456 4160 7.687005 TTACAAAAACTTGCATTTAGGAACG 57.313 32.000 0.00 0.00 0.00 3.95
3457 4161 5.047188 ACAAAAACTTGCATTTAGGAACGG 58.953 37.500 0.00 0.00 0.00 4.44
3458 4162 5.163499 ACAAAAACTTGCATTTAGGAACGGA 60.163 36.000 0.00 0.00 0.00 4.69
3459 4163 4.766404 AAACTTGCATTTAGGAACGGAG 57.234 40.909 0.00 0.00 0.00 4.63
3460 4164 2.711542 ACTTGCATTTAGGAACGGAGG 58.288 47.619 0.00 0.00 0.00 4.30
3461 4165 2.017049 CTTGCATTTAGGAACGGAGGG 58.983 52.381 0.00 0.00 0.00 4.30
3462 4166 1.281419 TGCATTTAGGAACGGAGGGA 58.719 50.000 0.00 0.00 0.00 4.20
3463 4167 1.209504 TGCATTTAGGAACGGAGGGAG 59.790 52.381 0.00 0.00 0.00 4.30
3464 4168 1.209747 GCATTTAGGAACGGAGGGAGT 59.790 52.381 0.00 0.00 0.00 3.85
3465 4169 2.433239 GCATTTAGGAACGGAGGGAGTA 59.567 50.000 0.00 0.00 0.00 2.59
3466 4170 3.740452 GCATTTAGGAACGGAGGGAGTAC 60.740 52.174 0.00 0.00 0.00 2.73
3467 4171 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
3468 4172 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
3469 4173 2.732844 AGGAACGGAGGGAGTACTAG 57.267 55.000 0.00 0.00 0.00 2.57
3470 4174 2.203584 AGGAACGGAGGGAGTACTAGA 58.796 52.381 0.00 0.00 0.00 2.43
3471 4175 2.173143 AGGAACGGAGGGAGTACTAGAG 59.827 54.545 0.00 0.00 0.00 2.43
3472 4176 2.092484 GGAACGGAGGGAGTACTAGAGT 60.092 54.545 0.00 0.00 0.00 3.24
3473 4177 3.135530 GGAACGGAGGGAGTACTAGAGTA 59.864 52.174 0.00 0.00 0.00 2.59
3483 4187 3.797451 GTACTAGAGTACCCAACCTGC 57.203 52.381 8.41 0.00 43.73 4.85
3484 4188 2.320681 ACTAGAGTACCCAACCTGCA 57.679 50.000 0.00 0.00 0.00 4.41
3485 4189 2.616524 ACTAGAGTACCCAACCTGCAA 58.383 47.619 0.00 0.00 0.00 4.08
3486 4190 2.976882 ACTAGAGTACCCAACCTGCAAA 59.023 45.455 0.00 0.00 0.00 3.68
3487 4191 2.271944 AGAGTACCCAACCTGCAAAC 57.728 50.000 0.00 0.00 0.00 2.93
3488 4192 0.872388 GAGTACCCAACCTGCAAACG 59.128 55.000 0.00 0.00 0.00 3.60
3489 4193 1.170290 AGTACCCAACCTGCAAACGC 61.170 55.000 0.00 0.00 0.00 4.84
3490 4194 1.149627 TACCCAACCTGCAAACGCT 59.850 52.632 0.00 0.00 0.00 5.07
3491 4195 0.466555 TACCCAACCTGCAAACGCTT 60.467 50.000 0.00 0.00 0.00 4.68
3492 4196 0.466555 ACCCAACCTGCAAACGCTTA 60.467 50.000 0.00 0.00 0.00 3.09
3493 4197 0.887933 CCCAACCTGCAAACGCTTAT 59.112 50.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 107 7.324935 TGAGTTGCGTACCTATCATCTTTTTA 58.675 34.615 0.00 0.00 0.00 1.52
109 111 5.537300 ATGAGTTGCGTACCTATCATCTT 57.463 39.130 0.00 0.00 0.00 2.40
314 478 8.443160 CAAGACGTTGACAATTCATGTATAACT 58.557 33.333 0.00 0.00 44.12 2.24
354 523 8.861086 TGTGTTTTTGGGTGTACAAATATACAT 58.139 29.630 0.00 0.00 37.93 2.29
454 623 5.883685 TCCTATTCATTGAGCACAGATCT 57.116 39.130 0.00 0.00 0.00 2.75
505 674 1.001641 GGTTGCCAGGCTGATCTGT 60.002 57.895 17.94 0.00 33.14 3.41
525 694 8.600668 AGGCAATAACATCACACATATCTAGAT 58.399 33.333 10.73 10.73 0.00 1.98
526 695 7.966812 AGGCAATAACATCACACATATCTAGA 58.033 34.615 0.00 0.00 0.00 2.43
528 697 9.657419 CATAGGCAATAACATCACACATATCTA 57.343 33.333 0.00 0.00 0.00 1.98
530 699 8.327941 ACATAGGCAATAACATCACACATATC 57.672 34.615 0.00 0.00 0.00 1.63
531 700 8.696043 AACATAGGCAATAACATCACACATAT 57.304 30.769 0.00 0.00 0.00 1.78
532 701 9.051679 GTAACATAGGCAATAACATCACACATA 57.948 33.333 0.00 0.00 0.00 2.29
536 705 8.574251 AAAGTAACATAGGCAATAACATCACA 57.426 30.769 0.00 0.00 0.00 3.58
537 706 8.673711 TGAAAGTAACATAGGCAATAACATCAC 58.326 33.333 0.00 0.00 0.00 3.06
544 713 9.337396 CCTACAATGAAAGTAACATAGGCAATA 57.663 33.333 0.00 0.00 0.00 1.90
545 714 7.834181 ACCTACAATGAAAGTAACATAGGCAAT 59.166 33.333 0.00 0.00 29.24 3.56
546 715 7.172342 ACCTACAATGAAAGTAACATAGGCAA 58.828 34.615 0.00 0.00 29.24 4.52
547 716 6.717289 ACCTACAATGAAAGTAACATAGGCA 58.283 36.000 0.00 0.00 29.24 4.75
548 717 8.202137 TCTACCTACAATGAAAGTAACATAGGC 58.798 37.037 0.00 0.00 29.24 3.93
554 723 9.070149 CGTAAGTCTACCTACAATGAAAGTAAC 57.930 37.037 0.00 0.00 0.00 2.50
556 725 7.629222 GCCGTAAGTCTACCTACAATGAAAGTA 60.629 40.741 0.00 0.00 0.00 2.24
557 726 6.628185 CCGTAAGTCTACCTACAATGAAAGT 58.372 40.000 0.00 0.00 0.00 2.66
558 727 5.519206 GCCGTAAGTCTACCTACAATGAAAG 59.481 44.000 0.00 0.00 0.00 2.62
559 728 5.413499 GCCGTAAGTCTACCTACAATGAAA 58.587 41.667 0.00 0.00 0.00 2.69
560 729 4.142093 GGCCGTAAGTCTACCTACAATGAA 60.142 45.833 0.00 0.00 0.00 2.57
562 731 3.383825 AGGCCGTAAGTCTACCTACAATG 59.616 47.826 0.00 0.00 0.00 2.82
563 732 3.639952 AGGCCGTAAGTCTACCTACAAT 58.360 45.455 0.00 0.00 0.00 2.71
564 733 3.091633 AGGCCGTAAGTCTACCTACAA 57.908 47.619 0.00 0.00 0.00 2.41
566 735 4.462508 AAAAGGCCGTAAGTCTACCTAC 57.537 45.455 0.00 0.00 0.00 3.18
568 737 3.558533 CCAAAAAGGCCGTAAGTCTACCT 60.559 47.826 0.00 0.00 0.00 3.08
569 738 2.745821 CCAAAAAGGCCGTAAGTCTACC 59.254 50.000 0.00 0.00 0.00 3.18
582 751 3.934457 AGTTGTTATCCGCCAAAAAGG 57.066 42.857 0.00 0.00 41.84 3.11
584 753 4.456566 GGAGTAGTTGTTATCCGCCAAAAA 59.543 41.667 0.00 0.00 0.00 1.94
585 754 4.004982 GGAGTAGTTGTTATCCGCCAAAA 58.995 43.478 0.00 0.00 0.00 2.44
586 755 3.602483 GGAGTAGTTGTTATCCGCCAAA 58.398 45.455 0.00 0.00 0.00 3.28
587 756 2.093341 GGGAGTAGTTGTTATCCGCCAA 60.093 50.000 0.00 0.00 32.30 4.52
589 758 1.761198 AGGGAGTAGTTGTTATCCGCC 59.239 52.381 0.00 0.00 32.30 6.13
590 759 2.223994 GGAGGGAGTAGTTGTTATCCGC 60.224 54.545 0.00 0.00 32.30 5.54
591 760 2.034305 CGGAGGGAGTAGTTGTTATCCG 59.966 54.545 0.00 0.00 42.00 4.18
606 788 0.035458 ACTCTTTCAAGCACGGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
607 789 1.151668 CACTCTTTCAAGCACGGAGG 58.848 55.000 0.00 0.00 0.00 4.30
608 790 1.871080 ACACTCTTTCAAGCACGGAG 58.129 50.000 0.00 0.00 0.00 4.63
609 791 2.364324 AGTACACTCTTTCAAGCACGGA 59.636 45.455 0.00 0.00 0.00 4.69
610 792 2.755650 AGTACACTCTTTCAAGCACGG 58.244 47.619 0.00 0.00 0.00 4.94
611 793 4.051922 AGAAGTACACTCTTTCAAGCACG 58.948 43.478 0.00 0.00 0.00 5.34
612 794 6.479001 TGTTAGAAGTACACTCTTTCAAGCAC 59.521 38.462 3.13 0.00 0.00 4.40
613 795 6.578944 TGTTAGAAGTACACTCTTTCAAGCA 58.421 36.000 3.13 0.00 0.00 3.91
614 796 7.478520 TTGTTAGAAGTACACTCTTTCAAGC 57.521 36.000 3.13 0.00 0.00 4.01
615 797 9.099454 ACTTTGTTAGAAGTACACTCTTTCAAG 57.901 33.333 3.13 4.53 38.06 3.02
616 798 9.444600 AACTTTGTTAGAAGTACACTCTTTCAA 57.555 29.630 3.13 6.62 38.86 2.69
617 799 8.879759 CAACTTTGTTAGAAGTACACTCTTTCA 58.120 33.333 3.13 1.83 38.86 2.69
618 800 8.336080 CCAACTTTGTTAGAAGTACACTCTTTC 58.664 37.037 3.13 0.00 38.86 2.62
619 801 8.044908 TCCAACTTTGTTAGAAGTACACTCTTT 58.955 33.333 3.13 0.00 38.86 2.52
620 802 7.562135 TCCAACTTTGTTAGAAGTACACTCTT 58.438 34.615 3.13 0.00 38.86 2.85
621 803 7.120923 TCCAACTTTGTTAGAAGTACACTCT 57.879 36.000 0.00 0.00 38.86 3.24
622 804 6.424207 CCTCCAACTTTGTTAGAAGTACACTC 59.576 42.308 0.00 0.00 38.86 3.51
623 805 6.289064 CCTCCAACTTTGTTAGAAGTACACT 58.711 40.000 0.00 0.00 38.86 3.55
624 806 5.469084 CCCTCCAACTTTGTTAGAAGTACAC 59.531 44.000 0.00 0.00 38.86 2.90
625 807 5.131475 ACCCTCCAACTTTGTTAGAAGTACA 59.869 40.000 0.00 0.00 38.86 2.90
626 808 5.618236 ACCCTCCAACTTTGTTAGAAGTAC 58.382 41.667 0.00 0.00 38.86 2.73
627 809 5.367352 TGACCCTCCAACTTTGTTAGAAGTA 59.633 40.000 0.00 0.00 38.86 2.24
628 810 4.165372 TGACCCTCCAACTTTGTTAGAAGT 59.835 41.667 0.00 0.00 41.44 3.01
629 811 4.714632 TGACCCTCCAACTTTGTTAGAAG 58.285 43.478 0.00 0.00 0.00 2.85
630 812 4.781775 TGACCCTCCAACTTTGTTAGAA 57.218 40.909 0.00 0.00 0.00 2.10
631 813 4.781775 TTGACCCTCCAACTTTGTTAGA 57.218 40.909 0.00 0.00 0.00 2.10
632 814 6.405278 AATTTGACCCTCCAACTTTGTTAG 57.595 37.500 0.00 0.00 0.00 2.34
633 815 7.947890 AGATAATTTGACCCTCCAACTTTGTTA 59.052 33.333 0.00 0.00 0.00 2.41
634 816 6.782494 AGATAATTTGACCCTCCAACTTTGTT 59.218 34.615 0.00 0.00 0.00 2.83
635 817 6.314917 AGATAATTTGACCCTCCAACTTTGT 58.685 36.000 0.00 0.00 0.00 2.83
636 818 6.840780 AGATAATTTGACCCTCCAACTTTG 57.159 37.500 0.00 0.00 0.00 2.77
637 819 8.950007 TTAAGATAATTTGACCCTCCAACTTT 57.050 30.769 0.00 0.00 0.00 2.66
638 820 8.950007 TTTAAGATAATTTGACCCTCCAACTT 57.050 30.769 0.00 0.00 0.00 2.66
639 821 8.170730 ACTTTAAGATAATTTGACCCTCCAACT 58.829 33.333 0.00 0.00 0.00 3.16
640 822 8.349568 ACTTTAAGATAATTTGACCCTCCAAC 57.650 34.615 0.00 0.00 0.00 3.77
641 823 8.950007 AACTTTAAGATAATTTGACCCTCCAA 57.050 30.769 0.00 0.00 0.00 3.53
642 824 8.802267 CAAACTTTAAGATAATTTGACCCTCCA 58.198 33.333 0.00 0.00 33.08 3.86
643 825 9.020731 TCAAACTTTAAGATAATTTGACCCTCC 57.979 33.333 0.00 0.00 35.05 4.30
644 826 9.841880 GTCAAACTTTAAGATAATTTGACCCTC 57.158 33.333 19.42 4.25 46.95 4.30
688 870 9.874205 CCTATTTGGTTTCACAAACATTGATAT 57.126 29.630 1.78 0.00 42.51 1.63
794 976 9.515226 AGCTAAACTCTTTTATGTTTGACCATA 57.485 29.630 0.00 0.00 37.06 2.74
795 977 8.409358 AGCTAAACTCTTTTATGTTTGACCAT 57.591 30.769 0.00 0.00 37.06 3.55
796 978 7.817418 AGCTAAACTCTTTTATGTTTGACCA 57.183 32.000 0.00 0.00 37.06 4.02
797 979 9.181805 GAAAGCTAAACTCTTTTATGTTTGACC 57.818 33.333 0.00 0.00 37.06 4.02
798 980 9.181805 GGAAAGCTAAACTCTTTTATGTTTGAC 57.818 33.333 0.00 0.00 37.06 3.18
799 981 8.908903 TGGAAAGCTAAACTCTTTTATGTTTGA 58.091 29.630 0.00 0.00 37.06 2.69
800 982 9.528018 TTGGAAAGCTAAACTCTTTTATGTTTG 57.472 29.630 0.00 0.00 37.06 2.93
801 983 9.529325 GTTGGAAAGCTAAACTCTTTTATGTTT 57.471 29.630 0.00 0.00 39.37 2.83
802 984 8.691797 TGTTGGAAAGCTAAACTCTTTTATGTT 58.308 29.630 0.00 0.00 34.24 2.71
803 985 8.232913 TGTTGGAAAGCTAAACTCTTTTATGT 57.767 30.769 0.00 0.00 34.24 2.29
804 986 9.528018 TTTGTTGGAAAGCTAAACTCTTTTATG 57.472 29.630 0.00 0.00 34.24 1.90
805 987 9.750125 CTTTGTTGGAAAGCTAAACTCTTTTAT 57.250 29.630 0.00 0.00 34.24 1.40
806 988 8.745590 ACTTTGTTGGAAAGCTAAACTCTTTTA 58.254 29.630 0.00 0.00 34.24 1.52
807 989 7.611770 ACTTTGTTGGAAAGCTAAACTCTTTT 58.388 30.769 0.00 0.00 34.24 2.27
808 990 7.170393 ACTTTGTTGGAAAGCTAAACTCTTT 57.830 32.000 0.00 0.00 36.55 2.52
809 991 6.775594 ACTTTGTTGGAAAGCTAAACTCTT 57.224 33.333 0.00 0.00 0.00 2.85
810 992 6.377146 TCAACTTTGTTGGAAAGCTAAACTCT 59.623 34.615 10.05 0.00 0.00 3.24
811 993 6.560711 TCAACTTTGTTGGAAAGCTAAACTC 58.439 36.000 10.05 0.00 0.00 3.01
812 994 6.524101 TCAACTTTGTTGGAAAGCTAAACT 57.476 33.333 10.05 0.00 0.00 2.66
813 995 7.330946 ACTTTCAACTTTGTTGGAAAGCTAAAC 59.669 33.333 21.01 0.00 46.25 2.01
814 996 7.382898 ACTTTCAACTTTGTTGGAAAGCTAAA 58.617 30.769 21.01 10.41 46.25 1.85
815 997 6.930731 ACTTTCAACTTTGTTGGAAAGCTAA 58.069 32.000 21.01 5.48 46.25 3.09
816 998 6.524101 ACTTTCAACTTTGTTGGAAAGCTA 57.476 33.333 21.01 1.09 46.25 3.32
817 999 5.405935 ACTTTCAACTTTGTTGGAAAGCT 57.594 34.783 21.01 13.15 46.25 3.74
818 1000 7.381408 GGTATACTTTCAACTTTGTTGGAAAGC 59.619 37.037 21.01 9.44 46.25 3.51
820 1002 7.562088 AGGGTATACTTTCAACTTTGTTGGAAA 59.438 33.333 10.05 8.44 0.00 3.13
821 1003 7.064229 AGGGTATACTTTCAACTTTGTTGGAA 58.936 34.615 10.05 7.19 0.00 3.53
822 1004 6.607019 AGGGTATACTTTCAACTTTGTTGGA 58.393 36.000 10.05 0.00 0.00 3.53
823 1005 6.894339 AGGGTATACTTTCAACTTTGTTGG 57.106 37.500 10.05 0.00 0.00 3.77
824 1006 7.013846 TGGAAGGGTATACTTTCAACTTTGTTG 59.986 37.037 16.84 4.25 33.12 3.33
825 1007 7.064229 TGGAAGGGTATACTTTCAACTTTGTT 58.936 34.615 16.84 0.00 33.12 2.83
826 1008 6.607019 TGGAAGGGTATACTTTCAACTTTGT 58.393 36.000 16.84 0.00 33.12 2.83
827 1009 7.309194 CCTTGGAAGGGTATACTTTCAACTTTG 60.309 40.741 16.84 1.77 40.20 2.77
828 1010 6.719829 CCTTGGAAGGGTATACTTTCAACTTT 59.280 38.462 16.84 0.00 40.20 2.66
829 1011 6.045106 TCCTTGGAAGGGTATACTTTCAACTT 59.955 38.462 16.84 7.59 46.47 2.66
830 1012 5.550403 TCCTTGGAAGGGTATACTTTCAACT 59.450 40.000 16.84 1.15 46.47 3.16
831 1013 5.646793 GTCCTTGGAAGGGTATACTTTCAAC 59.353 44.000 16.84 6.53 46.47 3.18
832 1014 5.311121 TGTCCTTGGAAGGGTATACTTTCAA 59.689 40.000 16.84 9.45 46.47 2.69
833 1015 4.847512 TGTCCTTGGAAGGGTATACTTTCA 59.152 41.667 16.84 3.31 46.47 2.69
834 1016 5.189145 TCTGTCCTTGGAAGGGTATACTTTC 59.811 44.000 5.58 7.35 46.47 2.62
835 1017 5.098663 TCTGTCCTTGGAAGGGTATACTTT 58.901 41.667 5.58 0.00 46.47 2.66
836 1018 4.695606 TCTGTCCTTGGAAGGGTATACTT 58.304 43.478 5.58 0.00 46.47 2.24
837 1019 4.290942 CTCTGTCCTTGGAAGGGTATACT 58.709 47.826 5.58 0.00 46.47 2.12
838 1020 3.388350 CCTCTGTCCTTGGAAGGGTATAC 59.612 52.174 5.58 0.00 46.47 1.47
839 1021 3.632645 CCCTCTGTCCTTGGAAGGGTATA 60.633 52.174 14.08 0.00 46.47 1.47
840 1022 2.482494 CCTCTGTCCTTGGAAGGGTAT 58.518 52.381 5.58 0.00 46.47 2.73
841 1023 1.554822 CCCTCTGTCCTTGGAAGGGTA 60.555 57.143 14.08 0.00 46.47 3.69
842 1024 0.842467 CCCTCTGTCCTTGGAAGGGT 60.842 60.000 14.08 0.00 46.47 4.34
843 1025 0.547712 TCCCTCTGTCCTTGGAAGGG 60.548 60.000 15.55 15.55 46.47 3.95
845 1027 1.650528 ACTCCCTCTGTCCTTGGAAG 58.349 55.000 0.00 0.00 0.00 3.46
846 1028 2.111972 AGTACTCCCTCTGTCCTTGGAA 59.888 50.000 0.00 0.00 0.00 3.53
847 1029 1.717077 AGTACTCCCTCTGTCCTTGGA 59.283 52.381 0.00 0.00 0.00 3.53
848 1030 1.827969 CAGTACTCCCTCTGTCCTTGG 59.172 57.143 0.00 0.00 0.00 3.61
849 1031 1.205893 GCAGTACTCCCTCTGTCCTTG 59.794 57.143 0.00 0.00 34.57 3.61
850 1032 1.203187 TGCAGTACTCCCTCTGTCCTT 60.203 52.381 0.00 0.00 34.57 3.36
851 1033 0.409876 TGCAGTACTCCCTCTGTCCT 59.590 55.000 0.00 0.00 34.57 3.85
852 1034 0.820871 CTGCAGTACTCCCTCTGTCC 59.179 60.000 5.25 0.00 34.57 4.02
853 1035 1.551452 ACTGCAGTACTCCCTCTGTC 58.449 55.000 20.16 0.00 34.57 3.51
854 1036 2.041891 ACTACTGCAGTACTCCCTCTGT 59.958 50.000 22.67 13.16 34.98 3.41
855 1037 2.729194 ACTACTGCAGTACTCCCTCTG 58.271 52.381 22.67 12.52 34.98 3.35
865 1047 9.887629 ATCGTGTATATATAGTACTACTGCAGT 57.112 33.333 25.12 25.12 41.62 4.40
867 1049 8.610035 GCATCGTGTATATATAGTACTACTGCA 58.390 37.037 4.31 0.00 0.00 4.41
902 1089 3.243134 GGCTTTTGGCAGTTGTACGTTAA 60.243 43.478 0.00 0.00 45.26 2.01
991 1193 0.105224 CCCGTCGCCATGGTATTGTA 59.895 55.000 14.67 0.00 0.00 2.41
992 1194 1.153249 CCCGTCGCCATGGTATTGT 60.153 57.895 14.67 0.00 0.00 2.71
993 1195 1.153249 ACCCGTCGCCATGGTATTG 60.153 57.895 14.67 1.22 0.00 1.90
1038 1241 3.003763 AAGGTCTCGGGGTCCAGC 61.004 66.667 0.00 0.00 0.00 4.85
1179 1382 1.153349 GATGGGCTCACCGTTCTCC 60.153 63.158 0.00 0.00 44.64 3.71
2100 2313 2.124570 AGCTTCATGGCGCGGAAT 60.125 55.556 8.83 0.00 37.29 3.01
2436 2655 0.532862 CAAGCTCCCACGTGTCTTGT 60.533 55.000 15.65 0.00 31.99 3.16
2509 2728 3.822192 TCGCATCGAGGGGTGACG 61.822 66.667 13.98 0.76 0.00 4.35
2518 2737 2.809174 CGTTGTGGCTCGCATCGA 60.809 61.111 11.39 0.00 38.72 3.59
2524 2743 4.368808 CCGTTGCGTTGTGGCTCG 62.369 66.667 0.00 0.00 0.00 5.03
2525 2744 3.276846 ACCGTTGCGTTGTGGCTC 61.277 61.111 0.00 0.00 0.00 4.70
2526 2745 3.582120 CACCGTTGCGTTGTGGCT 61.582 61.111 0.00 0.00 0.00 4.75
2527 2746 4.622456 CCACCGTTGCGTTGTGGC 62.622 66.667 0.00 0.00 42.71 5.01
2529 2748 3.582120 AGCCACCGTTGCGTTGTG 61.582 61.111 0.00 0.00 0.00 3.33
2530 2749 3.582120 CAGCCACCGTTGCGTTGT 61.582 61.111 0.00 0.00 0.00 3.32
2531 2750 2.329678 TTTCAGCCACCGTTGCGTTG 62.330 55.000 0.00 0.00 0.00 4.10
2536 2755 5.226396 TGAATTTTATTTCAGCCACCGTTG 58.774 37.500 0.00 0.00 32.07 4.10
2541 2760 8.477984 TGCTTAATGAATTTTATTTCAGCCAC 57.522 30.769 11.84 0.00 38.90 5.01
2542 2761 9.316730 GATGCTTAATGAATTTTATTTCAGCCA 57.683 29.630 11.84 5.01 38.90 4.75
2543 2762 9.316730 TGATGCTTAATGAATTTTATTTCAGCC 57.683 29.630 11.84 3.38 38.90 4.85
2614 3171 1.045407 TACGTTGTGGCTCTGTTCCT 58.955 50.000 0.00 0.00 0.00 3.36
2623 3180 4.483476 ACTCTTCATTTTACGTTGTGGC 57.517 40.909 0.00 0.00 0.00 5.01
2641 3198 9.008965 TCTTCATGCTTCAGATCTAGTATACTC 57.991 37.037 9.12 0.00 0.00 2.59
2643 3200 9.405587 GTTCTTCATGCTTCAGATCTAGTATAC 57.594 37.037 0.00 0.00 0.00 1.47
2654 3349 7.630242 TTTTATAGGGTTCTTCATGCTTCAG 57.370 36.000 0.00 0.00 0.00 3.02
2686 3381 0.102120 ACTCGCAGCTCTGATACAGC 59.898 55.000 0.29 0.00 37.12 4.40
2688 3383 1.135286 CACACTCGCAGCTCTGATACA 60.135 52.381 0.29 0.00 0.00 2.29
2694 3389 0.459237 GCATACACACTCGCAGCTCT 60.459 55.000 0.00 0.00 0.00 4.09
2903 3598 0.179156 ATTGCGCTGCTGCACAATAC 60.179 50.000 24.71 4.81 46.27 1.89
2917 3613 6.862944 ATAAACGGTGATAAAACAATTGCG 57.137 33.333 5.05 0.00 0.00 4.85
2933 3629 6.759356 ACTTGGGAAAAAGTTGAAATAAACGG 59.241 34.615 0.00 0.00 37.05 4.44
2961 3657 7.915923 GCATTGCTATTACCCTAAAAGAAGAAC 59.084 37.037 0.16 0.00 0.00 3.01
3107 3809 4.512198 CGTGTATACTCACAAACACCCAAA 59.488 41.667 4.17 0.00 39.20 3.28
3216 3919 1.796459 GGTGTACGCGTTCACTCATTT 59.204 47.619 36.49 6.38 35.26 2.32
3224 3927 1.532007 TCCATTTTGGTGTACGCGTTC 59.468 47.619 20.78 14.31 39.03 3.95
3235 3938 9.874205 AAATCAAATGTATGTACTCCATTTTGG 57.126 29.630 12.30 6.13 36.84 3.28
3286 3990 7.668492 AGGGAGTATAATTTCCGTTCACTATC 58.332 38.462 0.00 0.00 34.17 2.08
3299 4003 7.628501 ATTTAGGAACGGAGGGAGTATAATT 57.371 36.000 0.00 0.00 0.00 1.40
3300 4004 8.912614 ATATTTAGGAACGGAGGGAGTATAAT 57.087 34.615 0.00 0.00 0.00 1.28
3301 4005 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
3302 4006 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
3303 4007 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
3304 4008 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3305 4009 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3306 4010 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3307 4011 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3308 4012 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3309 4013 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
3310 4014 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
3311 4015 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
3312 4016 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
3313 4017 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
3325 4029 9.137459 CCATAGTAGAATCTCTCCAAAGACTTA 57.863 37.037 0.00 0.00 0.00 2.24
3326 4030 7.841729 TCCATAGTAGAATCTCTCCAAAGACTT 59.158 37.037 0.00 0.00 0.00 3.01
3327 4031 7.286775 GTCCATAGTAGAATCTCTCCAAAGACT 59.713 40.741 0.00 0.00 0.00 3.24
3328 4032 7.430441 GTCCATAGTAGAATCTCTCCAAAGAC 58.570 42.308 0.00 0.00 0.00 3.01
3329 4033 6.551601 GGTCCATAGTAGAATCTCTCCAAAGA 59.448 42.308 0.00 0.00 0.00 2.52
3330 4034 6.325028 TGGTCCATAGTAGAATCTCTCCAAAG 59.675 42.308 0.00 0.00 0.00 2.77
3331 4035 6.098409 GTGGTCCATAGTAGAATCTCTCCAAA 59.902 42.308 0.00 0.00 0.00 3.28
3332 4036 5.598830 GTGGTCCATAGTAGAATCTCTCCAA 59.401 44.000 0.00 0.00 0.00 3.53
3333 4037 5.141182 GTGGTCCATAGTAGAATCTCTCCA 58.859 45.833 0.00 0.00 0.00 3.86
3334 4038 5.141182 TGTGGTCCATAGTAGAATCTCTCC 58.859 45.833 0.00 0.00 0.00 3.71
3335 4039 6.909550 ATGTGGTCCATAGTAGAATCTCTC 57.090 41.667 0.00 0.00 29.82 3.20
3336 4040 7.298374 TGTATGTGGTCCATAGTAGAATCTCT 58.702 38.462 0.00 0.00 36.71 3.10
3337 4041 7.526142 TGTATGTGGTCCATAGTAGAATCTC 57.474 40.000 0.00 0.00 36.71 2.75
3338 4042 7.914427 TTGTATGTGGTCCATAGTAGAATCT 57.086 36.000 0.00 0.00 36.71 2.40
3339 4043 7.171678 GCTTTGTATGTGGTCCATAGTAGAATC 59.828 40.741 0.00 0.00 36.71 2.52
3340 4044 6.992715 GCTTTGTATGTGGTCCATAGTAGAAT 59.007 38.462 0.00 0.00 36.71 2.40
3341 4045 6.070481 TGCTTTGTATGTGGTCCATAGTAGAA 60.070 38.462 0.00 0.00 36.71 2.10
3342 4046 5.423931 TGCTTTGTATGTGGTCCATAGTAGA 59.576 40.000 0.00 0.00 36.71 2.59
3343 4047 5.670485 TGCTTTGTATGTGGTCCATAGTAG 58.330 41.667 0.00 0.00 36.71 2.57
3344 4048 5.685520 TGCTTTGTATGTGGTCCATAGTA 57.314 39.130 0.00 0.00 36.71 1.82
3345 4049 4.568072 TGCTTTGTATGTGGTCCATAGT 57.432 40.909 0.00 0.00 36.71 2.12
3346 4050 5.895636 TTTGCTTTGTATGTGGTCCATAG 57.104 39.130 0.00 0.00 36.71 2.23
3347 4051 6.435591 TCATTTTGCTTTGTATGTGGTCCATA 59.564 34.615 0.00 0.00 34.86 2.74
3348 4052 5.245751 TCATTTTGCTTTGTATGTGGTCCAT 59.754 36.000 0.00 0.00 37.58 3.41
3349 4053 4.586421 TCATTTTGCTTTGTATGTGGTCCA 59.414 37.500 0.00 0.00 0.00 4.02
3350 4054 5.132897 TCATTTTGCTTTGTATGTGGTCC 57.867 39.130 0.00 0.00 0.00 4.46
3351 4055 5.630680 CACTCATTTTGCTTTGTATGTGGTC 59.369 40.000 0.00 0.00 0.00 4.02
3352 4056 5.301551 TCACTCATTTTGCTTTGTATGTGGT 59.698 36.000 0.00 0.00 0.00 4.16
3353 4057 5.771469 TCACTCATTTTGCTTTGTATGTGG 58.229 37.500 0.00 0.00 0.00 4.17
3354 4058 7.811236 AGATTCACTCATTTTGCTTTGTATGTG 59.189 33.333 0.00 0.00 0.00 3.21
3355 4059 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
3359 4063 9.236006 AGTATAGATTCACTCATTTTGCTTTGT 57.764 29.630 0.00 0.00 0.00 2.83
3360 4064 9.713740 GAGTATAGATTCACTCATTTTGCTTTG 57.286 33.333 0.00 0.00 40.74 2.77
3361 4065 9.678260 AGAGTATAGATTCACTCATTTTGCTTT 57.322 29.630 4.70 0.00 42.99 3.51
3383 4087 8.744652 CGGATGTATCTAGATCCATTTTAGAGT 58.255 37.037 8.95 0.00 44.10 3.24
3384 4088 8.744652 ACGGATGTATCTAGATCCATTTTAGAG 58.255 37.037 8.95 2.22 44.10 2.43
3385 4089 8.651589 ACGGATGTATCTAGATCCATTTTAGA 57.348 34.615 8.95 0.00 44.10 2.10
3388 4092 8.816894 ACATACGGATGTATCTAGATCCATTTT 58.183 33.333 12.79 1.12 44.77 1.82
3389 4093 8.367660 ACATACGGATGTATCTAGATCCATTT 57.632 34.615 12.79 1.46 44.77 2.32
3390 4094 7.962995 ACATACGGATGTATCTAGATCCATT 57.037 36.000 12.79 0.00 44.77 3.16
3391 4095 7.397476 ACAACATACGGATGTATCTAGATCCAT 59.603 37.037 15.10 10.34 45.93 3.41
3392 4096 6.719829 ACAACATACGGATGTATCTAGATCCA 59.280 38.462 15.10 4.15 45.93 3.41
3393 4097 7.159322 ACAACATACGGATGTATCTAGATCC 57.841 40.000 15.10 4.15 45.93 3.36
3394 4098 7.094334 TGGACAACATACGGATGTATCTAGATC 60.094 40.741 15.10 4.24 45.93 2.75
3395 4099 6.719829 TGGACAACATACGGATGTATCTAGAT 59.280 38.462 15.10 10.73 45.93 1.98
3396 4100 6.066032 TGGACAACATACGGATGTATCTAGA 58.934 40.000 15.10 0.00 45.93 2.43
3397 4101 6.327279 TGGACAACATACGGATGTATCTAG 57.673 41.667 15.10 4.73 45.93 2.43
3398 4102 6.911250 ATGGACAACATACGGATGTATCTA 57.089 37.500 15.10 13.10 45.93 1.98
3399 4103 5.808366 ATGGACAACATACGGATGTATCT 57.192 39.130 15.10 0.00 45.93 1.98
3400 4104 6.688578 ACTATGGACAACATACGGATGTATC 58.311 40.000 15.10 14.47 45.93 2.24
3401 4105 6.665992 ACTATGGACAACATACGGATGTAT 57.334 37.500 15.10 5.31 45.93 2.29
3402 4106 7.585579 TTACTATGGACAACATACGGATGTA 57.414 36.000 15.10 0.00 45.93 2.29
3404 4108 7.780008 TTTTACTATGGACAACATACGGATG 57.220 36.000 5.94 5.94 41.03 3.51
3405 4109 8.974060 AATTTTACTATGGACAACATACGGAT 57.026 30.769 0.00 0.00 41.03 4.18
3406 4110 8.795842 AAATTTTACTATGGACAACATACGGA 57.204 30.769 0.00 0.00 41.03 4.69
3407 4111 9.849166 AAAAATTTTACTATGGACAACATACGG 57.151 29.630 3.34 0.00 41.03 4.02
3430 4134 8.596380 CGTTCCTAAATGCAAGTTTTTGTAAAA 58.404 29.630 0.00 0.00 36.65 1.52
3431 4135 7.222999 CCGTTCCTAAATGCAAGTTTTTGTAAA 59.777 33.333 0.00 0.00 36.65 2.01
3432 4136 6.697892 CCGTTCCTAAATGCAAGTTTTTGTAA 59.302 34.615 0.00 0.00 36.65 2.41
3433 4137 6.039493 TCCGTTCCTAAATGCAAGTTTTTGTA 59.961 34.615 0.00 0.00 36.65 2.41
3434 4138 5.047188 CCGTTCCTAAATGCAAGTTTTTGT 58.953 37.500 0.00 0.00 36.65 2.83
3435 4139 5.285651 TCCGTTCCTAAATGCAAGTTTTTG 58.714 37.500 0.00 0.00 37.36 2.44
3436 4140 5.508994 CCTCCGTTCCTAAATGCAAGTTTTT 60.509 40.000 0.00 0.00 0.00 1.94
3437 4141 4.022329 CCTCCGTTCCTAAATGCAAGTTTT 60.022 41.667 0.00 0.00 0.00 2.43
3438 4142 3.506067 CCTCCGTTCCTAAATGCAAGTTT 59.494 43.478 0.00 0.00 0.00 2.66
3439 4143 3.081804 CCTCCGTTCCTAAATGCAAGTT 58.918 45.455 0.00 0.00 0.00 2.66
3440 4144 2.618045 CCCTCCGTTCCTAAATGCAAGT 60.618 50.000 0.00 0.00 0.00 3.16
3441 4145 2.017049 CCCTCCGTTCCTAAATGCAAG 58.983 52.381 0.00 0.00 0.00 4.01
3442 4146 1.631388 TCCCTCCGTTCCTAAATGCAA 59.369 47.619 0.00 0.00 0.00 4.08
3443 4147 1.209504 CTCCCTCCGTTCCTAAATGCA 59.790 52.381 0.00 0.00 0.00 3.96
3444 4148 1.209747 ACTCCCTCCGTTCCTAAATGC 59.790 52.381 0.00 0.00 0.00 3.56
3445 4149 3.705072 AGTACTCCCTCCGTTCCTAAATG 59.295 47.826 0.00 0.00 0.00 2.32
3446 4150 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3447 4151 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3448 4152 3.782523 TCTAGTACTCCCTCCGTTCCTAA 59.217 47.826 0.00 0.00 0.00 2.69
3449 4153 3.387962 TCTAGTACTCCCTCCGTTCCTA 58.612 50.000 0.00 0.00 0.00 2.94
3450 4154 2.173143 CTCTAGTACTCCCTCCGTTCCT 59.827 54.545 0.00 0.00 0.00 3.36
3451 4155 2.092484 ACTCTAGTACTCCCTCCGTTCC 60.092 54.545 0.00 0.00 0.00 3.62
3452 4156 3.280197 ACTCTAGTACTCCCTCCGTTC 57.720 52.381 0.00 0.00 0.00 3.95
3453 4157 4.149511 GTACTCTAGTACTCCCTCCGTT 57.850 50.000 12.10 0.00 45.47 4.44
3454 4158 3.836365 GTACTCTAGTACTCCCTCCGT 57.164 52.381 12.10 0.00 45.47 4.69
3464 4168 3.461378 TGCAGGTTGGGTACTCTAGTA 57.539 47.619 0.00 0.00 0.00 1.82
3465 4169 2.320681 TGCAGGTTGGGTACTCTAGT 57.679 50.000 0.00 0.00 0.00 2.57
3466 4170 3.335579 GTTTGCAGGTTGGGTACTCTAG 58.664 50.000 0.00 0.00 0.00 2.43
3467 4171 2.289195 CGTTTGCAGGTTGGGTACTCTA 60.289 50.000 0.00 0.00 0.00 2.43
3468 4172 1.542547 CGTTTGCAGGTTGGGTACTCT 60.543 52.381 0.00 0.00 0.00 3.24
3469 4173 0.872388 CGTTTGCAGGTTGGGTACTC 59.128 55.000 0.00 0.00 0.00 2.59
3470 4174 1.170290 GCGTTTGCAGGTTGGGTACT 61.170 55.000 0.00 0.00 42.15 2.73
3471 4175 1.170290 AGCGTTTGCAGGTTGGGTAC 61.170 55.000 0.00 0.00 46.23 3.34
3472 4176 0.466555 AAGCGTTTGCAGGTTGGGTA 60.467 50.000 0.00 0.00 46.23 3.69
3473 4177 0.466555 TAAGCGTTTGCAGGTTGGGT 60.467 50.000 0.00 0.00 46.23 4.51
3474 4178 0.887933 ATAAGCGTTTGCAGGTTGGG 59.112 50.000 0.00 0.00 46.23 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.