Multiple sequence alignment - TraesCS3A01G393100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G393100 chr3A 100.000 2583 0 0 1 2583 640878465 640881047 0.000000e+00 4771.0
1 TraesCS3A01G393100 chr3A 91.554 817 46 11 1446 2242 640952202 640953015 0.000000e+00 1105.0
2 TraesCS3A01G393100 chr3A 92.172 792 44 7 1446 2225 641012496 641013281 0.000000e+00 1103.0
3 TraesCS3A01G393100 chr3A 83.182 880 84 32 1400 2236 428569922 428569064 0.000000e+00 747.0
4 TraesCS3A01G393100 chr3A 100.000 306 0 0 2871 3176 34128360 34128665 1.650000e-157 566.0
5 TraesCS3A01G393100 chr3A 100.000 306 0 0 2871 3176 640881335 640881640 1.650000e-157 566.0
6 TraesCS3A01G393100 chr3A 98.052 308 6 0 1 308 640867420 640867727 1.300000e-148 536.0
7 TraesCS3A01G393100 chr3A 94.485 272 9 4 1124 1395 640951828 640952093 6.340000e-112 414.0
8 TraesCS3A01G393100 chr3A 94.485 272 9 4 1124 1395 641012122 641012387 6.340000e-112 414.0
9 TraesCS3A01G393100 chr3A 82.812 448 30 22 969 1398 428570445 428570027 1.080000e-94 357.0
10 TraesCS3A01G393100 chr3A 90.345 145 10 2 341 485 640950928 640951068 1.500000e-43 187.0
11 TraesCS3A01G393100 chr3A 90.345 145 10 2 341 485 641011222 641011362 1.500000e-43 187.0
12 TraesCS3A01G393100 chr3A 97.778 45 0 1 296 339 640867898 640867942 3.400000e-10 76.8
13 TraesCS3A01G393100 chr3D 91.298 2011 93 23 340 2296 501330756 501332738 0.000000e+00 2669.0
14 TraesCS3A01G393100 chr3D 90.370 810 61 8 1446 2242 501413641 501414446 0.000000e+00 1048.0
15 TraesCS3A01G393100 chr3D 80.208 1152 114 68 341 1391 501412373 501413511 0.000000e+00 760.0
16 TraesCS3A01G393100 chr3D 82.236 805 86 24 1470 2236 308985435 308984650 2.670000e-180 641.0
17 TraesCS3A01G393100 chr3D 91.418 268 10 6 1144 1398 308985854 308985587 3.900000e-94 355.0
18 TraesCS3A01G393100 chr3D 87.129 101 8 3 969 1064 308986004 308985904 3.350000e-20 110.0
19 TraesCS3A01G393100 chr3D 97.222 36 0 1 2316 2350 364591044 364591079 3.420000e-05 60.2
20 TraesCS3A01G393100 chr3B 91.638 1734 90 30 580 2296 663072786 663071091 0.000000e+00 2348.0
21 TraesCS3A01G393100 chr3B 90.152 792 60 8 1446 2225 663062000 663061215 0.000000e+00 1014.0
22 TraesCS3A01G393100 chr3B 84.530 808 80 18 1467 2236 412596318 412597118 0.000000e+00 758.0
23 TraesCS3A01G393100 chr3B 91.667 264 9 6 1145 1395 412595901 412596164 1.400000e-93 353.0
24 TraesCS3A01G393100 chr3B 96.859 191 5 1 1205 1395 663062316 663062127 5.110000e-83 318.0
25 TraesCS3A01G393100 chr5A 99.410 339 2 0 1 339 601711451 601711789 1.620000e-172 616.0
26 TraesCS3A01G393100 chr5A 74.742 194 43 6 1203 1393 619689761 619689951 7.300000e-12 82.4
27 TraesCS3A01G393100 chr2B 97.935 339 7 0 1 339 579992526 579992864 3.530000e-164 588.0
28 TraesCS3A01G393100 chr2B 97.059 340 9 1 1 339 580000599 580000938 3.550000e-159 571.0
29 TraesCS3A01G393100 chr2B 92.264 349 18 3 1 340 25585551 25585899 1.320000e-133 486.0
30 TraesCS3A01G393100 chr2B 97.222 36 0 1 2316 2350 166673125 166673160 3.420000e-05 60.2
31 TraesCS3A01G393100 chr7A 100.000 306 0 0 2871 3176 682513586 682513891 1.650000e-157 566.0
32 TraesCS3A01G393100 chr7A 99.673 306 1 0 2871 3176 152223784 152223479 7.690000e-156 560.0
33 TraesCS3A01G393100 chr7A 99.673 306 1 0 2871 3176 611790584 611790279 7.690000e-156 560.0
34 TraesCS3A01G393100 chr7A 99.673 306 1 0 2871 3176 667743243 667742938 7.690000e-156 560.0
35 TraesCS3A01G393100 chr7A 98.397 312 5 0 1 312 608903734 608903423 1.670000e-152 549.0
36 TraesCS3A01G393100 chr7A 95.294 340 15 1 1 339 186395391 186395730 3.600000e-149 538.0
37 TraesCS3A01G393100 chr7A 99.548 221 1 0 2363 2583 107263635 107263855 1.370000e-108 403.0
38 TraesCS3A01G393100 chr7A 99.543 219 1 0 2365 2583 11404237 11404019 1.770000e-107 399.0
39 TraesCS3A01G393100 chr7A 99.103 223 1 1 2361 2583 95634605 95634384 1.770000e-107 399.0
40 TraesCS3A01G393100 chr7A 99.541 218 1 0 2366 2583 23483589 23483806 6.380000e-107 398.0
41 TraesCS3A01G393100 chr7A 99.541 218 1 0 2366 2583 43982386 43982169 6.380000e-107 398.0
42 TraesCS3A01G393100 chr7A 99.541 218 1 0 2366 2583 69443501 69443718 6.380000e-107 398.0
43 TraesCS3A01G393100 chr7A 98.655 223 2 1 2361 2583 731335450 731335671 8.260000e-106 394.0
44 TraesCS3A01G393100 chr7A 97.382 191 5 0 1 191 186401420 186401610 3.060000e-85 326.0
45 TraesCS3A01G393100 chr7A 97.222 36 0 1 2316 2350 92430090 92430055 3.420000e-05 60.2
46 TraesCS3A01G393100 chr1A 100.000 306 0 0 2871 3176 567670103 567669798 1.650000e-157 566.0
47 TraesCS3A01G393100 chr1A 99.673 306 1 0 2871 3176 16534184 16533879 7.690000e-156 560.0
48 TraesCS3A01G393100 chr1A 99.673 306 1 0 2871 3176 521961280 521961585 7.690000e-156 560.0
49 TraesCS3A01G393100 chr1A 99.541 218 1 0 2366 2583 471046768 471046985 6.380000e-107 398.0
50 TraesCS3A01G393100 chr4A 99.673 306 1 0 2871 3176 623598672 623598977 7.690000e-156 560.0
51 TraesCS3A01G393100 chr4A 99.541 218 1 0 2366 2583 603009161 603009378 6.380000e-107 398.0
52 TraesCS3A01G393100 chr7D 95.601 341 13 2 1 339 38629287 38629627 2.150000e-151 545.0
53 TraesCS3A01G393100 chr7D 93.529 340 12 2 1 339 632983215 632983545 6.120000e-137 497.0
54 TraesCS3A01G393100 chr7D 93.529 340 12 2 1 339 632985835 632986165 6.120000e-137 497.0
55 TraesCS3A01G393100 chr6A 95.294 340 16 0 1 340 585804312 585803973 1.000000e-149 540.0
56 TraesCS3A01G393100 chr6A 94.444 36 1 1 2316 2350 327711454 327711419 2.000000e-03 54.7
57 TraesCS3A01G393100 chr6A 96.875 32 1 0 2319 2350 471212509 471212478 2.000000e-03 54.7
58 TraesCS3A01G393100 chr5D 92.059 340 25 2 1 339 550209904 550210242 7.970000e-131 477.0
59 TraesCS3A01G393100 chr5D 97.222 36 0 1 2316 2350 552530968 552531003 3.420000e-05 60.2
60 TraesCS3A01G393100 chr7B 97.222 36 0 1 2316 2350 31823815 31823780 3.420000e-05 60.2
61 TraesCS3A01G393100 chr7B 97.222 36 0 1 2316 2350 406934372 406934407 3.420000e-05 60.2
62 TraesCS3A01G393100 chr6D 97.222 36 0 1 2316 2350 437421121 437421156 3.420000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G393100 chr3A 640878465 640881640 3175 False 2668.500000 4771 100.000000 1 3176 2 chr3A.!!$F3 3175
1 TraesCS3A01G393100 chr3A 640950928 640953015 2087 False 568.666667 1105 92.128000 341 2242 3 chr3A.!!$F4 1901
2 TraesCS3A01G393100 chr3A 641011222 641013281 2059 False 568.000000 1103 92.334000 341 2225 3 chr3A.!!$F5 1884
3 TraesCS3A01G393100 chr3A 428569064 428570445 1381 True 552.000000 747 82.997000 969 2236 2 chr3A.!!$R1 1267
4 TraesCS3A01G393100 chr3A 640867420 640867942 522 False 306.400000 536 97.915000 1 339 2 chr3A.!!$F2 338
5 TraesCS3A01G393100 chr3D 501330756 501332738 1982 False 2669.000000 2669 91.298000 340 2296 1 chr3D.!!$F2 1956
6 TraesCS3A01G393100 chr3D 501412373 501414446 2073 False 904.000000 1048 85.289000 341 2242 2 chr3D.!!$F3 1901
7 TraesCS3A01G393100 chr3D 308984650 308986004 1354 True 368.666667 641 86.927667 969 2236 3 chr3D.!!$R1 1267
8 TraesCS3A01G393100 chr3B 663071091 663072786 1695 True 2348.000000 2348 91.638000 580 2296 1 chr3B.!!$R1 1716
9 TraesCS3A01G393100 chr3B 663061215 663062316 1101 True 666.000000 1014 93.505500 1205 2225 2 chr3B.!!$R2 1020
10 TraesCS3A01G393100 chr3B 412595901 412597118 1217 False 555.500000 758 88.098500 1145 2236 2 chr3B.!!$F1 1091
11 TraesCS3A01G393100 chr7D 632983215 632986165 2950 False 497.000000 497 93.529000 1 339 2 chr7D.!!$F2 338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 466 0.037882 CGCATCATAGCATCCGTCCT 60.038 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 4448 0.030399 ACCGGGACTATAGGCCCTTT 60.03 55.0 36.19 22.52 42.4 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.179018 GGATCCTACCAAAGCGCCAT 60.179 55.000 2.29 0.00 0.00 4.40
226 228 8.086851 AGCTAACAAAAACAAATGCTAATTGG 57.913 30.769 0.00 0.00 32.02 3.16
235 237 4.083324 ACAAATGCTAATTGGACGTGACAG 60.083 41.667 0.00 0.00 32.02 3.51
238 240 3.064207 TGCTAATTGGACGTGACAGAAC 58.936 45.455 0.00 0.00 0.00 3.01
278 280 9.277783 CCTATACTCAACTAATGCAAGCTAAAT 57.722 33.333 0.00 0.00 0.00 1.40
281 283 7.313951 ACTCAACTAATGCAAGCTAAATCTC 57.686 36.000 0.00 0.00 0.00 2.75
296 298 6.016024 AGCTAAATCTCAGAAACAAACATGCA 60.016 34.615 0.00 0.00 0.00 3.96
300 302 7.458409 AATCTCAGAAACAAACATGCACTAT 57.542 32.000 0.00 0.00 0.00 2.12
319 321 0.889994 TTCCCTACGTGCTCGCTAAA 59.110 50.000 8.29 0.00 41.18 1.85
410 412 1.690352 CCCATCCATCCCAAAAGCATC 59.310 52.381 0.00 0.00 0.00 3.91
430 432 5.049818 GCATCGGAGGAGACAAGATATTTTG 60.050 44.000 4.50 4.50 0.00 2.44
445 447 1.981256 TTTTGGAAGAGAGCACACCC 58.019 50.000 0.00 0.00 0.00 4.61
454 456 0.105593 AGAGCACACCCGCATCATAG 59.894 55.000 0.00 0.00 0.00 2.23
455 457 1.502163 GAGCACACCCGCATCATAGC 61.502 60.000 0.00 0.00 0.00 2.97
456 458 1.819208 GCACACCCGCATCATAGCA 60.819 57.895 0.00 0.00 0.00 3.49
458 460 0.870393 CACACCCGCATCATAGCATC 59.130 55.000 0.00 0.00 0.00 3.91
459 461 0.250467 ACACCCGCATCATAGCATCC 60.250 55.000 0.00 0.00 0.00 3.51
462 464 1.016130 CCCGCATCATAGCATCCGTC 61.016 60.000 0.00 0.00 0.00 4.79
464 466 0.037882 CGCATCATAGCATCCGTCCT 60.038 55.000 0.00 0.00 0.00 3.85
533 569 4.408182 ACTACAAGCACAGTCCATATCC 57.592 45.455 0.00 0.00 0.00 2.59
537 573 1.485124 AGCACAGTCCATATCCGTCA 58.515 50.000 0.00 0.00 0.00 4.35
576 682 6.370994 TGAGACTGTAGTGTACTAGTACAAGC 59.629 42.308 32.02 24.11 46.33 4.01
577 683 6.236409 AGACTGTAGTGTACTAGTACAAGCA 58.764 40.000 32.02 26.50 46.33 3.91
609 765 4.927422 TCGATCGCATTATCAACACAGTA 58.073 39.130 11.09 0.00 0.00 2.74
741 941 8.579850 TTGATGCTTAGGTTATCATTTTCTGT 57.420 30.769 0.00 0.00 31.54 3.41
771 971 0.600255 CACGCTCTGGTCGAAAAGGT 60.600 55.000 0.00 0.00 0.00 3.50
1053 1715 1.133884 TGACGTCCGGGAGTGAGATAT 60.134 52.381 14.12 0.00 0.00 1.63
1088 1757 2.105128 GTGTCTGAGATCCGCCGG 59.895 66.667 0.00 0.00 0.00 6.13
1135 1842 3.796111 AGGCAGCTGGTACATAGGATAT 58.204 45.455 17.12 0.00 38.20 1.63
1363 2082 0.603707 CGGCAACTTCTCCAGCTTCA 60.604 55.000 0.00 0.00 0.00 3.02
1552 2392 0.537188 CGGCCAGATGTACCTTCTGT 59.463 55.000 17.10 0.00 39.16 3.41
1642 2786 2.224079 CAGCACGTGATGGCCAATATAC 59.776 50.000 25.62 5.71 0.00 1.47
1645 2789 3.325870 CACGTGATGGCCAATATACGAT 58.674 45.455 28.90 16.61 34.64 3.73
1707 2851 1.749638 GCTCGAGGAGGTTCGGAGA 60.750 63.158 15.58 0.00 40.83 3.71
1716 2911 2.125512 GTTCGGAGACTGCGGCAT 60.126 61.111 16.74 0.00 34.32 4.40
1764 3594 3.536917 CAGATGGCCCGGCGACTA 61.537 66.667 9.30 0.00 0.00 2.59
2257 4325 7.289395 CAATCATTTGCACGCATTTTCTTTAA 58.711 30.769 0.00 0.00 0.00 1.52
2258 4326 6.450845 TCATTTGCACGCATTTTCTTTAAG 57.549 33.333 0.00 0.00 0.00 1.85
2259 4327 5.982516 TCATTTGCACGCATTTTCTTTAAGT 59.017 32.000 0.00 0.00 0.00 2.24
2260 4328 6.478344 TCATTTGCACGCATTTTCTTTAAGTT 59.522 30.769 0.00 0.00 0.00 2.66
2261 4329 6.654793 TTTGCACGCATTTTCTTTAAGTTT 57.345 29.167 0.00 0.00 0.00 2.66
2296 4368 1.683385 TGGGAGCGAGATGTATGTCAG 59.317 52.381 0.00 0.00 0.00 3.51
2297 4369 1.957177 GGGAGCGAGATGTATGTCAGA 59.043 52.381 0.00 0.00 0.00 3.27
2298 4370 2.560542 GGGAGCGAGATGTATGTCAGAT 59.439 50.000 0.00 0.00 0.00 2.90
2299 4371 3.366883 GGGAGCGAGATGTATGTCAGATC 60.367 52.174 0.00 0.00 0.00 2.75
2300 4372 3.487536 GAGCGAGATGTATGTCAGATCG 58.512 50.000 0.00 0.00 39.40 3.69
2301 4373 2.881513 AGCGAGATGTATGTCAGATCGT 59.118 45.455 0.00 0.00 38.96 3.73
2302 4374 3.058570 AGCGAGATGTATGTCAGATCGTC 60.059 47.826 0.00 0.00 38.96 4.20
2303 4375 3.474304 CGAGATGTATGTCAGATCGTCG 58.526 50.000 0.00 0.00 35.02 5.12
2304 4376 3.184581 CGAGATGTATGTCAGATCGTCGA 59.815 47.826 0.00 0.00 33.46 4.20
2305 4377 4.318831 CGAGATGTATGTCAGATCGTCGAA 60.319 45.833 0.00 0.00 33.46 3.71
2306 4378 5.615764 CGAGATGTATGTCAGATCGTCGAAT 60.616 44.000 0.00 0.00 33.46 3.34
2307 4379 5.456265 AGATGTATGTCAGATCGTCGAATG 58.544 41.667 0.00 1.46 32.17 2.67
2308 4380 4.632538 TGTATGTCAGATCGTCGAATGT 57.367 40.909 0.00 0.00 0.00 2.71
2309 4381 4.351192 TGTATGTCAGATCGTCGAATGTG 58.649 43.478 0.00 0.00 0.00 3.21
2310 4382 3.510388 ATGTCAGATCGTCGAATGTGT 57.490 42.857 0.00 0.00 0.00 3.72
2311 4383 4.632538 ATGTCAGATCGTCGAATGTGTA 57.367 40.909 0.00 0.00 0.00 2.90
2312 4384 3.754955 TGTCAGATCGTCGAATGTGTAC 58.245 45.455 0.00 0.00 0.00 2.90
2313 4385 3.189702 TGTCAGATCGTCGAATGTGTACA 59.810 43.478 0.00 0.00 0.00 2.90
2314 4386 3.786576 GTCAGATCGTCGAATGTGTACAG 59.213 47.826 0.00 0.00 0.00 2.74
2315 4387 3.687698 TCAGATCGTCGAATGTGTACAGA 59.312 43.478 0.00 0.00 0.00 3.41
2316 4388 4.155280 TCAGATCGTCGAATGTGTACAGAA 59.845 41.667 0.00 0.00 0.00 3.02
2317 4389 4.263209 CAGATCGTCGAATGTGTACAGAAC 59.737 45.833 0.00 0.00 0.00 3.01
2318 4390 3.629438 TCGTCGAATGTGTACAGAACA 57.371 42.857 0.00 0.00 35.06 3.18
2319 4391 3.561503 TCGTCGAATGTGTACAGAACAG 58.438 45.455 0.00 0.00 39.29 3.16
2320 4392 3.004002 TCGTCGAATGTGTACAGAACAGT 59.996 43.478 0.00 0.00 39.29 3.55
2321 4393 3.361053 CGTCGAATGTGTACAGAACAGTC 59.639 47.826 0.00 0.00 39.29 3.51
2322 4394 4.547532 GTCGAATGTGTACAGAACAGTCT 58.452 43.478 0.00 0.00 39.76 3.24
2332 4404 3.949842 CAGAACAGTCTGGTCAGATCA 57.050 47.619 20.00 0.00 46.55 2.92
2333 4405 4.468765 CAGAACAGTCTGGTCAGATCAT 57.531 45.455 20.00 0.00 46.55 2.45
2334 4406 4.182339 CAGAACAGTCTGGTCAGATCATG 58.818 47.826 20.00 4.53 46.55 3.07
2335 4407 3.197333 AGAACAGTCTGGTCAGATCATGG 59.803 47.826 20.00 0.00 36.30 3.66
2336 4408 2.544721 ACAGTCTGGTCAGATCATGGT 58.455 47.619 4.53 0.00 39.97 3.55
2337 4409 2.235650 ACAGTCTGGTCAGATCATGGTG 59.764 50.000 4.53 0.00 39.97 4.17
2338 4410 1.836166 AGTCTGGTCAGATCATGGTGG 59.164 52.381 3.84 0.00 39.97 4.61
2339 4411 1.833630 GTCTGGTCAGATCATGGTGGA 59.166 52.381 3.84 0.00 39.97 4.02
2340 4412 2.113807 TCTGGTCAGATCATGGTGGAG 58.886 52.381 0.00 0.00 31.41 3.86
2341 4413 2.113807 CTGGTCAGATCATGGTGGAGA 58.886 52.381 0.00 0.00 0.00 3.71
2342 4414 2.102757 CTGGTCAGATCATGGTGGAGAG 59.897 54.545 0.00 0.00 0.00 3.20
2343 4415 2.114616 GGTCAGATCATGGTGGAGAGT 58.885 52.381 0.00 0.00 0.00 3.24
2344 4416 3.300388 GGTCAGATCATGGTGGAGAGTA 58.700 50.000 0.00 0.00 0.00 2.59
2345 4417 3.068873 GGTCAGATCATGGTGGAGAGTAC 59.931 52.174 0.00 0.00 0.00 2.73
2346 4418 3.957497 GTCAGATCATGGTGGAGAGTACT 59.043 47.826 0.00 0.00 0.00 2.73
2347 4419 4.404073 GTCAGATCATGGTGGAGAGTACTT 59.596 45.833 0.00 0.00 0.00 2.24
2348 4420 4.646945 TCAGATCATGGTGGAGAGTACTTC 59.353 45.833 0.00 0.00 0.00 3.01
2349 4421 4.648762 CAGATCATGGTGGAGAGTACTTCT 59.351 45.833 0.00 0.00 39.43 2.85
2350 4422 4.648762 AGATCATGGTGGAGAGTACTTCTG 59.351 45.833 0.00 0.00 35.87 3.02
2351 4423 3.779444 TCATGGTGGAGAGTACTTCTGT 58.221 45.455 0.00 0.00 35.87 3.41
2352 4424 4.930696 TCATGGTGGAGAGTACTTCTGTA 58.069 43.478 0.00 0.00 35.87 2.74
2353 4425 5.519808 TCATGGTGGAGAGTACTTCTGTAT 58.480 41.667 0.00 0.00 35.87 2.29
2354 4426 5.958380 TCATGGTGGAGAGTACTTCTGTATT 59.042 40.000 0.00 0.00 35.87 1.89
2355 4427 5.661056 TGGTGGAGAGTACTTCTGTATTG 57.339 43.478 0.00 0.00 35.87 1.90
2356 4428 4.466370 TGGTGGAGAGTACTTCTGTATTGG 59.534 45.833 0.00 0.00 35.87 3.16
2357 4429 4.434520 GTGGAGAGTACTTCTGTATTGGC 58.565 47.826 0.00 0.00 35.87 4.52
2358 4430 4.160626 GTGGAGAGTACTTCTGTATTGGCT 59.839 45.833 0.00 0.00 35.87 4.75
2359 4431 4.402793 TGGAGAGTACTTCTGTATTGGCTC 59.597 45.833 0.00 0.00 35.87 4.70
2360 4432 4.402793 GGAGAGTACTTCTGTATTGGCTCA 59.597 45.833 0.00 0.00 35.87 4.26
2361 4433 5.069781 GGAGAGTACTTCTGTATTGGCTCAT 59.930 44.000 0.00 0.00 35.87 2.90
2362 4434 5.911752 AGAGTACTTCTGTATTGGCTCATG 58.088 41.667 0.00 0.00 33.93 3.07
2363 4435 5.658634 AGAGTACTTCTGTATTGGCTCATGA 59.341 40.000 0.00 0.00 33.93 3.07
2364 4436 6.326064 AGAGTACTTCTGTATTGGCTCATGAT 59.674 38.462 0.00 0.00 33.93 2.45
2365 4437 6.520272 AGTACTTCTGTATTGGCTCATGATC 58.480 40.000 0.00 0.00 0.00 2.92
2366 4438 5.363562 ACTTCTGTATTGGCTCATGATCA 57.636 39.130 0.00 0.00 0.00 2.92
2367 4439 5.121811 ACTTCTGTATTGGCTCATGATCAC 58.878 41.667 0.00 0.00 0.00 3.06
2368 4440 5.104610 ACTTCTGTATTGGCTCATGATCACT 60.105 40.000 0.00 0.00 0.00 3.41
2369 4441 4.700700 TCTGTATTGGCTCATGATCACTG 58.299 43.478 0.00 0.00 0.00 3.66
2370 4442 3.812262 TGTATTGGCTCATGATCACTGG 58.188 45.455 0.00 0.00 0.00 4.00
2371 4443 3.200605 TGTATTGGCTCATGATCACTGGT 59.799 43.478 0.00 0.00 0.00 4.00
2372 4444 4.408596 TGTATTGGCTCATGATCACTGGTA 59.591 41.667 0.00 0.00 0.00 3.25
2373 4445 3.548745 TTGGCTCATGATCACTGGTAG 57.451 47.619 0.00 0.00 0.00 3.18
2374 4446 2.750814 TGGCTCATGATCACTGGTAGA 58.249 47.619 0.00 0.00 0.00 2.59
2375 4447 3.106827 TGGCTCATGATCACTGGTAGAA 58.893 45.455 0.00 0.00 0.00 2.10
2376 4448 3.519107 TGGCTCATGATCACTGGTAGAAA 59.481 43.478 0.00 0.00 0.00 2.52
2377 4449 4.019411 TGGCTCATGATCACTGGTAGAAAA 60.019 41.667 0.00 0.00 0.00 2.29
2378 4450 4.943705 GGCTCATGATCACTGGTAGAAAAA 59.056 41.667 0.00 0.00 0.00 1.94
2379 4451 5.065731 GGCTCATGATCACTGGTAGAAAAAG 59.934 44.000 0.00 0.00 0.00 2.27
2380 4452 5.065731 GCTCATGATCACTGGTAGAAAAAGG 59.934 44.000 0.00 0.00 0.00 3.11
2381 4453 5.500234 TCATGATCACTGGTAGAAAAAGGG 58.500 41.667 0.00 0.00 0.00 3.95
2382 4454 3.686016 TGATCACTGGTAGAAAAAGGGC 58.314 45.455 0.00 0.00 0.00 5.19
2383 4455 2.579410 TCACTGGTAGAAAAAGGGCC 57.421 50.000 0.00 0.00 0.00 5.80
2384 4456 2.062636 TCACTGGTAGAAAAAGGGCCT 58.937 47.619 0.00 0.00 0.00 5.19
2385 4457 3.253220 TCACTGGTAGAAAAAGGGCCTA 58.747 45.455 6.41 0.00 0.00 3.93
2386 4458 3.850173 TCACTGGTAGAAAAAGGGCCTAT 59.150 43.478 6.41 0.00 0.00 2.57
2387 4459 5.034200 TCACTGGTAGAAAAAGGGCCTATA 58.966 41.667 6.41 0.00 0.00 1.31
2388 4460 5.130477 TCACTGGTAGAAAAAGGGCCTATAG 59.870 44.000 6.41 0.00 0.00 1.31
2389 4461 5.037598 ACTGGTAGAAAAAGGGCCTATAGT 58.962 41.667 6.41 0.00 0.00 2.12
2390 4462 5.130643 ACTGGTAGAAAAAGGGCCTATAGTC 59.869 44.000 6.41 2.06 0.00 2.59
2391 4463 4.411212 TGGTAGAAAAAGGGCCTATAGTCC 59.589 45.833 6.41 4.84 0.00 3.85
2392 4464 4.202440 GGTAGAAAAAGGGCCTATAGTCCC 60.202 50.000 11.13 11.13 42.94 4.46
2396 4468 4.308061 GGGCCTATAGTCCCGGTT 57.692 61.111 2.38 0.00 32.00 4.44
2397 4469 2.056141 GGGCCTATAGTCCCGGTTC 58.944 63.158 2.38 0.00 32.00 3.62
2398 4470 1.664306 GGCCTATAGTCCCGGTTCG 59.336 63.158 0.00 0.00 0.00 3.95
2399 4471 1.111715 GGCCTATAGTCCCGGTTCGT 61.112 60.000 0.00 0.00 0.00 3.85
2400 4472 1.609208 GCCTATAGTCCCGGTTCGTA 58.391 55.000 0.00 0.00 0.00 3.43
2401 4473 1.956477 GCCTATAGTCCCGGTTCGTAA 59.044 52.381 0.00 0.00 0.00 3.18
2402 4474 2.030451 GCCTATAGTCCCGGTTCGTAAG 60.030 54.545 0.00 0.00 0.00 2.34
2403 4475 2.555757 CCTATAGTCCCGGTTCGTAAGG 59.444 54.545 0.00 0.00 38.47 2.69
2404 4476 1.406903 ATAGTCCCGGTTCGTAAGGG 58.593 55.000 0.00 0.00 46.40 3.95
2405 4477 0.039618 TAGTCCCGGTTCGTAAGGGT 59.960 55.000 0.00 0.00 45.27 4.34
2406 4478 1.216444 GTCCCGGTTCGTAAGGGTC 59.784 63.158 0.00 0.00 45.27 4.46
2407 4479 1.077265 TCCCGGTTCGTAAGGGTCT 59.923 57.895 0.00 0.00 45.27 3.85
2408 4480 0.542702 TCCCGGTTCGTAAGGGTCTT 60.543 55.000 0.00 0.00 45.27 3.01
2409 4481 0.322648 CCCGGTTCGTAAGGGTCTTT 59.677 55.000 0.00 0.00 40.27 2.52
2410 4482 1.550072 CCCGGTTCGTAAGGGTCTTTA 59.450 52.381 0.00 0.00 40.27 1.85
2411 4483 2.417787 CCCGGTTCGTAAGGGTCTTTAG 60.418 54.545 0.00 0.00 40.27 1.85
2412 4484 2.232208 CCGGTTCGTAAGGGTCTTTAGT 59.768 50.000 0.00 0.00 38.47 2.24
2413 4485 3.505836 CGGTTCGTAAGGGTCTTTAGTC 58.494 50.000 0.00 0.00 38.47 2.59
2414 4486 3.674410 CGGTTCGTAAGGGTCTTTAGTCC 60.674 52.174 0.00 0.00 38.47 3.85
2415 4487 3.368843 GGTTCGTAAGGGTCTTTAGTCCC 60.369 52.174 4.13 4.13 42.66 4.46
2416 4488 2.094675 TCGTAAGGGTCTTTAGTCCCG 58.905 52.381 6.44 0.00 46.13 5.14
2417 4489 1.135721 CGTAAGGGTCTTTAGTCCCGG 59.864 57.143 0.00 0.00 46.13 5.73
2418 4490 2.182827 GTAAGGGTCTTTAGTCCCGGT 58.817 52.381 0.00 2.54 46.13 5.28
2419 4491 1.738474 AAGGGTCTTTAGTCCCGGTT 58.262 50.000 0.00 0.00 46.13 4.44
2420 4492 1.273759 AGGGTCTTTAGTCCCGGTTC 58.726 55.000 0.00 0.00 46.13 3.62
2421 4493 0.251354 GGGTCTTTAGTCCCGGTTCC 59.749 60.000 0.00 0.00 33.91 3.62
2422 4494 0.108472 GGTCTTTAGTCCCGGTTCCG 60.108 60.000 0.00 4.08 0.00 4.30
2439 4511 3.132863 CGGAACCGGGACTAAAGTG 57.867 57.895 6.32 0.00 35.56 3.16
2440 4512 0.319405 CGGAACCGGGACTAAAGTGT 59.681 55.000 6.32 0.00 35.56 3.55
2441 4513 1.670967 CGGAACCGGGACTAAAGTGTC 60.671 57.143 6.32 0.00 36.31 3.67
2442 4514 1.670967 GGAACCGGGACTAAAGTGTCG 60.671 57.143 6.32 0.00 37.81 4.35
2443 4515 0.319405 AACCGGGACTAAAGTGTCGG 59.681 55.000 6.32 15.12 42.22 4.79
2444 4516 0.829182 ACCGGGACTAAAGTGTCGGT 60.829 55.000 6.32 16.09 43.56 4.69
2445 4517 1.176527 CCGGGACTAAAGTGTCGGTA 58.823 55.000 0.00 0.00 37.81 4.02
2446 4518 1.135286 CCGGGACTAAAGTGTCGGTAC 60.135 57.143 0.00 0.00 37.81 3.34
2447 4519 1.815003 CGGGACTAAAGTGTCGGTACT 59.185 52.381 0.00 0.00 37.81 2.73
2448 4520 3.009723 CGGGACTAAAGTGTCGGTACTA 58.990 50.000 0.00 0.00 37.81 1.82
2449 4521 3.440173 CGGGACTAAAGTGTCGGTACTAA 59.560 47.826 0.00 0.00 37.81 2.24
2450 4522 4.096984 CGGGACTAAAGTGTCGGTACTAAT 59.903 45.833 0.00 0.00 37.81 1.73
2451 4523 5.296780 CGGGACTAAAGTGTCGGTACTAATA 59.703 44.000 0.00 0.00 37.81 0.98
2452 4524 6.499172 GGGACTAAAGTGTCGGTACTAATAC 58.501 44.000 0.00 0.00 37.81 1.89
2453 4525 6.460261 GGGACTAAAGTGTCGGTACTAATACC 60.460 46.154 0.00 0.00 46.72 2.73
2473 4545 3.830698 CCCCCTTTAGTCCCGGTT 58.169 61.111 0.00 0.00 0.00 4.44
2474 4546 1.605992 CCCCCTTTAGTCCCGGTTC 59.394 63.158 0.00 0.00 0.00 3.62
2475 4547 1.202769 CCCCCTTTAGTCCCGGTTCA 61.203 60.000 0.00 0.00 0.00 3.18
2476 4548 0.694196 CCCCTTTAGTCCCGGTTCAA 59.306 55.000 0.00 0.00 0.00 2.69
2477 4549 1.283905 CCCCTTTAGTCCCGGTTCAAT 59.716 52.381 0.00 0.00 0.00 2.57
2478 4550 2.640184 CCCTTTAGTCCCGGTTCAATC 58.360 52.381 0.00 0.00 0.00 2.67
2479 4551 2.640184 CCTTTAGTCCCGGTTCAATCC 58.360 52.381 0.00 0.00 0.00 3.01
2480 4552 2.026636 CCTTTAGTCCCGGTTCAATCCA 60.027 50.000 0.00 0.00 0.00 3.41
2481 4553 3.270877 CTTTAGTCCCGGTTCAATCCAG 58.729 50.000 0.00 0.00 0.00 3.86
2482 4554 2.241281 TAGTCCCGGTTCAATCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
2483 4555 1.358152 AGTCCCGGTTCAATCCAGAA 58.642 50.000 0.00 0.00 0.00 3.02
2484 4556 1.003233 AGTCCCGGTTCAATCCAGAAC 59.997 52.381 0.00 0.00 45.50 3.01
2489 4561 3.948735 GTTCAATCCAGAACCGGGA 57.051 52.632 6.32 0.00 41.52 5.14
2490 4562 1.450025 GTTCAATCCAGAACCGGGAC 58.550 55.000 6.32 0.00 41.52 4.46
2491 4563 1.003233 GTTCAATCCAGAACCGGGACT 59.997 52.381 6.32 0.73 41.52 3.85
2492 4564 2.235402 GTTCAATCCAGAACCGGGACTA 59.765 50.000 6.32 0.00 41.52 2.59
2493 4565 2.542550 TCAATCCAGAACCGGGACTAA 58.457 47.619 6.32 0.00 37.23 2.24
2494 4566 2.907696 TCAATCCAGAACCGGGACTAAA 59.092 45.455 6.32 0.00 37.23 1.85
2495 4567 3.055385 TCAATCCAGAACCGGGACTAAAG 60.055 47.826 6.32 0.00 37.23 1.85
2496 4568 1.272807 TCCAGAACCGGGACTAAAGG 58.727 55.000 6.32 2.64 0.00 3.11
2497 4569 0.392595 CCAGAACCGGGACTAAAGGC 60.393 60.000 6.32 0.00 0.00 4.35
2498 4570 0.392595 CAGAACCGGGACTAAAGGCC 60.393 60.000 6.32 0.00 0.00 5.19
2499 4571 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
2500 4572 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
2501 4573 1.559965 AACCGGGACTAAAGGCCCTC 61.560 60.000 18.97 0.00 42.40 4.30
2502 4574 2.743179 CCGGGACTAAAGGCCCTCC 61.743 68.421 18.97 0.00 42.40 4.30
2503 4575 1.993391 CGGGACTAAAGGCCCTCCA 60.993 63.158 18.97 0.00 42.40 3.86
2504 4576 1.608154 GGGACTAAAGGCCCTCCAC 59.392 63.158 14.19 0.00 41.31 4.02
2505 4577 1.221021 GGACTAAAGGCCCTCCACG 59.779 63.158 0.00 0.00 33.74 4.94
2506 4578 1.551019 GGACTAAAGGCCCTCCACGT 61.551 60.000 0.00 0.00 33.74 4.49
2507 4579 0.391263 GACTAAAGGCCCTCCACGTG 60.391 60.000 9.08 9.08 33.74 4.49
2508 4580 1.078426 CTAAAGGCCCTCCACGTGG 60.078 63.158 29.26 29.26 33.74 4.94
2514 4586 4.704833 CCCTCCACGTGGGCAGTG 62.705 72.222 33.40 12.90 37.99 3.66
2532 4604 3.385384 CGCAGAGCCCAGTCAGGA 61.385 66.667 0.00 0.00 41.22 3.86
2533 4605 2.583520 GCAGAGCCCAGTCAGGAG 59.416 66.667 0.00 0.00 41.22 3.69
2534 4606 1.986757 GCAGAGCCCAGTCAGGAGA 60.987 63.158 0.00 0.00 41.22 3.71
2535 4607 1.896694 CAGAGCCCAGTCAGGAGAC 59.103 63.158 0.00 0.00 45.31 3.36
2536 4608 1.305718 AGAGCCCAGTCAGGAGACC 60.306 63.158 0.00 0.00 46.15 3.85
2537 4609 2.284995 AGCCCAGTCAGGAGACCC 60.285 66.667 0.00 0.00 46.15 4.46
2538 4610 2.284995 GCCCAGTCAGGAGACCCT 60.285 66.667 0.00 0.00 46.15 4.34
2539 4611 1.920835 GCCCAGTCAGGAGACCCTT 60.921 63.158 0.00 0.00 46.15 3.95
2540 4612 1.492993 GCCCAGTCAGGAGACCCTTT 61.493 60.000 0.00 0.00 46.15 3.11
2541 4613 0.326264 CCCAGTCAGGAGACCCTTTG 59.674 60.000 0.00 0.00 46.15 2.77
2542 4614 0.326264 CCAGTCAGGAGACCCTTTGG 59.674 60.000 0.00 0.00 46.15 3.28
2543 4615 2.388661 CCAGTCAGGAGACCCTTTGGT 61.389 57.143 0.00 0.00 46.15 3.67
2551 4623 2.518933 ACCCTTTGGTCCCGGTTG 59.481 61.111 0.00 0.00 43.06 3.77
2552 4624 2.282887 CCCTTTGGTCCCGGTTGG 60.283 66.667 0.00 0.00 0.00 3.77
2553 4625 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
2554 4626 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
2555 4627 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
2556 4628 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
2571 4643 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
2572 4644 2.282887 GCACCAACCGGGACCAAT 60.283 61.111 6.32 0.00 41.15 3.16
2573 4645 1.001887 GCACCAACCGGGACCAATA 60.002 57.895 6.32 0.00 41.15 1.90
2574 4646 1.029947 GCACCAACCGGGACCAATAG 61.030 60.000 6.32 0.00 41.15 1.73
2575 4647 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
2576 4648 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
2577 4649 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
2578 4650 0.106719 CAACCGGGACCAATAGGCAT 60.107 55.000 6.32 0.00 39.06 4.40
2579 4651 0.182775 AACCGGGACCAATAGGCATC 59.817 55.000 6.32 0.00 39.06 3.91
2580 4652 1.073199 CCGGGACCAATAGGCATCC 59.927 63.158 0.00 0.00 39.06 3.51
2581 4653 1.705002 CCGGGACCAATAGGCATCCA 61.705 60.000 0.00 0.00 39.06 3.41
2582 4654 0.535102 CGGGACCAATAGGCATCCAC 60.535 60.000 0.00 0.00 39.06 4.02
2888 4960 3.131326 TTATGTCCGTGCTTGGTCG 57.869 52.632 0.00 0.00 0.00 4.79
2889 4961 0.604073 TTATGTCCGTGCTTGGTCGA 59.396 50.000 0.00 0.00 0.00 4.20
2890 4962 0.108992 TATGTCCGTGCTTGGTCGAC 60.109 55.000 7.13 7.13 0.00 4.20
2891 4963 3.103911 GTCCGTGCTTGGTCGACG 61.104 66.667 9.92 0.00 0.00 5.12
2894 4966 2.126618 CGTGCTTGGTCGACGCTA 60.127 61.111 9.92 0.00 0.00 4.26
2895 4967 2.434134 CGTGCTTGGTCGACGCTAC 61.434 63.158 9.92 7.70 0.00 3.58
2896 4968 2.126618 TGCTTGGTCGACGCTACG 60.127 61.111 9.92 0.00 0.00 3.51
2897 4969 2.126580 GCTTGGTCGACGCTACGT 60.127 61.111 9.92 0.00 45.10 3.57
2898 4970 1.135315 GCTTGGTCGACGCTACGTA 59.865 57.895 9.92 0.00 41.37 3.57
2899 4971 1.130458 GCTTGGTCGACGCTACGTAC 61.130 60.000 9.92 0.00 41.37 3.67
2900 4972 0.445436 CTTGGTCGACGCTACGTACT 59.555 55.000 9.92 0.00 41.37 2.73
2901 4973 1.660607 CTTGGTCGACGCTACGTACTA 59.339 52.381 9.92 0.00 41.37 1.82
2902 4974 1.939974 TGGTCGACGCTACGTACTAT 58.060 50.000 9.92 0.00 41.37 2.12
2903 4975 3.092334 TGGTCGACGCTACGTACTATA 57.908 47.619 9.92 0.00 41.37 1.31
2904 4976 2.794910 TGGTCGACGCTACGTACTATAC 59.205 50.000 9.92 0.00 41.37 1.47
2905 4977 2.794910 GGTCGACGCTACGTACTATACA 59.205 50.000 9.92 0.00 41.37 2.29
2906 4978 3.430218 GGTCGACGCTACGTACTATACAT 59.570 47.826 9.92 0.00 41.37 2.29
2907 4979 4.621460 GGTCGACGCTACGTACTATACATA 59.379 45.833 9.92 0.00 41.37 2.29
2908 4980 5.443431 GGTCGACGCTACGTACTATACATAC 60.443 48.000 9.92 0.00 41.37 2.39
2927 4999 7.300556 ACATACGTATAGAGAGGACTAGACA 57.699 40.000 7.96 0.00 35.23 3.41
2928 5000 7.153985 ACATACGTATAGAGAGGACTAGACAC 58.846 42.308 7.96 0.00 35.23 3.67
2929 5001 4.619973 ACGTATAGAGAGGACTAGACACG 58.380 47.826 0.00 0.00 35.23 4.49
2930 5002 3.429543 CGTATAGAGAGGACTAGACACGC 59.570 52.174 0.00 0.00 35.23 5.34
2931 5003 3.849563 ATAGAGAGGACTAGACACGCT 57.150 47.619 0.00 0.00 0.00 5.07
2932 5004 4.959560 ATAGAGAGGACTAGACACGCTA 57.040 45.455 0.00 1.02 0.00 4.26
2942 5014 2.335316 AGACACGCTAGCTAGCTAGT 57.665 50.000 39.05 32.17 46.85 2.57
2943 5015 3.472283 AGACACGCTAGCTAGCTAGTA 57.528 47.619 39.05 17.76 46.85 1.82
2944 5016 3.806380 AGACACGCTAGCTAGCTAGTAA 58.194 45.455 39.05 17.42 46.85 2.24
2945 5017 3.810941 AGACACGCTAGCTAGCTAGTAAG 59.189 47.826 39.05 32.50 46.85 2.34
2946 5018 8.249700 CTAGACACGCTAGCTAGCTAGTAAGC 62.250 50.000 39.05 30.98 46.85 3.09
2960 5032 5.917541 CTAGTAAGCAAACGAAGGAAACA 57.082 39.130 0.00 0.00 0.00 2.83
2961 5033 4.813296 AGTAAGCAAACGAAGGAAACAG 57.187 40.909 0.00 0.00 0.00 3.16
2962 5034 4.448210 AGTAAGCAAACGAAGGAAACAGA 58.552 39.130 0.00 0.00 0.00 3.41
2963 5035 4.879545 AGTAAGCAAACGAAGGAAACAGAA 59.120 37.500 0.00 0.00 0.00 3.02
2964 5036 3.971032 AGCAAACGAAGGAAACAGAAG 57.029 42.857 0.00 0.00 0.00 2.85
2965 5037 3.541632 AGCAAACGAAGGAAACAGAAGA 58.458 40.909 0.00 0.00 0.00 2.87
2966 5038 4.137543 AGCAAACGAAGGAAACAGAAGAT 58.862 39.130 0.00 0.00 0.00 2.40
2967 5039 4.214332 AGCAAACGAAGGAAACAGAAGATC 59.786 41.667 0.00 0.00 0.00 2.75
2968 5040 4.702392 CAAACGAAGGAAACAGAAGATCG 58.298 43.478 0.00 0.00 35.16 3.69
2969 5041 3.662247 ACGAAGGAAACAGAAGATCGT 57.338 42.857 0.00 0.00 37.24 3.73
2970 5042 3.576648 ACGAAGGAAACAGAAGATCGTC 58.423 45.455 0.00 0.00 37.48 4.20
2971 5043 3.005472 ACGAAGGAAACAGAAGATCGTCA 59.995 43.478 11.35 0.00 37.48 4.35
2972 5044 4.177026 CGAAGGAAACAGAAGATCGTCAT 58.823 43.478 11.35 0.00 0.00 3.06
2973 5045 4.032217 CGAAGGAAACAGAAGATCGTCATG 59.968 45.833 11.35 8.56 0.00 3.07
2974 5046 4.808414 AGGAAACAGAAGATCGTCATGA 57.192 40.909 11.35 0.00 0.00 3.07
2975 5047 5.152623 AGGAAACAGAAGATCGTCATGAA 57.847 39.130 11.35 0.00 0.00 2.57
2976 5048 4.932200 AGGAAACAGAAGATCGTCATGAAC 59.068 41.667 11.35 0.06 0.00 3.18
2977 5049 4.690748 GGAAACAGAAGATCGTCATGAACA 59.309 41.667 11.35 0.00 0.00 3.18
2978 5050 5.352569 GGAAACAGAAGATCGTCATGAACAT 59.647 40.000 11.35 0.00 0.00 2.71
2979 5051 6.535150 GGAAACAGAAGATCGTCATGAACATA 59.465 38.462 11.35 0.00 0.00 2.29
2980 5052 7.225538 GGAAACAGAAGATCGTCATGAACATAT 59.774 37.037 11.35 0.00 0.00 1.78
2981 5053 9.249457 GAAACAGAAGATCGTCATGAACATATA 57.751 33.333 11.35 0.00 0.00 0.86
2982 5054 9.770097 AAACAGAAGATCGTCATGAACATATAT 57.230 29.630 11.35 0.00 0.00 0.86
2983 5055 8.754230 ACAGAAGATCGTCATGAACATATATG 57.246 34.615 11.29 11.29 0.00 1.78
2984 5056 7.330454 ACAGAAGATCGTCATGAACATATATGC 59.670 37.037 12.79 0.00 0.00 3.14
2985 5057 7.330208 CAGAAGATCGTCATGAACATATATGCA 59.670 37.037 12.79 4.17 0.00 3.96
2986 5058 8.039538 AGAAGATCGTCATGAACATATATGCAT 58.960 33.333 12.79 3.79 0.00 3.96
2987 5059 9.305925 GAAGATCGTCATGAACATATATGCATA 57.694 33.333 12.79 9.27 0.00 3.14
2988 5060 8.640091 AGATCGTCATGAACATATATGCATAC 57.360 34.615 8.99 0.00 0.00 2.39
2989 5061 8.253113 AGATCGTCATGAACATATATGCATACA 58.747 33.333 8.99 0.00 0.00 2.29
2990 5062 7.816945 TCGTCATGAACATATATGCATACAG 57.183 36.000 8.99 4.51 0.00 2.74
2991 5063 7.601856 TCGTCATGAACATATATGCATACAGA 58.398 34.615 8.99 0.00 0.00 3.41
2992 5064 7.756722 TCGTCATGAACATATATGCATACAGAG 59.243 37.037 8.99 2.31 0.00 3.35
2993 5065 7.756722 CGTCATGAACATATATGCATACAGAGA 59.243 37.037 8.99 1.76 0.00 3.10
2994 5066 9.085250 GTCATGAACATATATGCATACAGAGAG 57.915 37.037 8.99 0.00 0.00 3.20
2995 5067 9.028284 TCATGAACATATATGCATACAGAGAGA 57.972 33.333 8.99 0.00 0.00 3.10
2996 5068 9.649167 CATGAACATATATGCATACAGAGAGAA 57.351 33.333 8.99 0.00 0.00 2.87
2997 5069 9.872721 ATGAACATATATGCATACAGAGAGAAG 57.127 33.333 8.99 0.00 0.00 2.85
2998 5070 8.864087 TGAACATATATGCATACAGAGAGAAGT 58.136 33.333 8.99 0.00 0.00 3.01
2999 5071 9.138062 GAACATATATGCATACAGAGAGAAGTG 57.862 37.037 8.99 0.00 0.00 3.16
3000 5072 8.414629 ACATATATGCATACAGAGAGAAGTGA 57.585 34.615 8.99 0.00 0.00 3.41
3001 5073 9.033711 ACATATATGCATACAGAGAGAAGTGAT 57.966 33.333 8.99 0.00 0.00 3.06
3005 5077 6.006759 TGCATACAGAGAGAAGTGATATCG 57.993 41.667 0.00 0.00 0.00 2.92
3006 5078 5.765182 TGCATACAGAGAGAAGTGATATCGA 59.235 40.000 0.00 0.00 0.00 3.59
3007 5079 6.083630 GCATACAGAGAGAAGTGATATCGAC 58.916 44.000 0.00 0.00 0.00 4.20
3008 5080 6.607689 CATACAGAGAGAAGTGATATCGACC 58.392 44.000 0.00 0.00 0.00 4.79
3009 5081 4.527944 ACAGAGAGAAGTGATATCGACCA 58.472 43.478 0.00 0.00 0.00 4.02
3010 5082 4.336993 ACAGAGAGAAGTGATATCGACCAC 59.663 45.833 0.00 6.38 0.00 4.16
3011 5083 3.886505 AGAGAGAAGTGATATCGACCACC 59.113 47.826 9.84 0.00 34.00 4.61
3012 5084 3.886505 GAGAGAAGTGATATCGACCACCT 59.113 47.826 9.84 3.06 34.00 4.00
3013 5085 3.886505 AGAGAAGTGATATCGACCACCTC 59.113 47.826 9.84 10.01 34.00 3.85
3014 5086 3.886505 GAGAAGTGATATCGACCACCTCT 59.113 47.826 12.55 12.55 36.94 3.69
3015 5087 3.886505 AGAAGTGATATCGACCACCTCTC 59.113 47.826 9.84 6.02 30.63 3.20
3016 5088 2.588620 AGTGATATCGACCACCTCTCC 58.411 52.381 9.84 0.00 34.00 3.71
3017 5089 2.175931 AGTGATATCGACCACCTCTCCT 59.824 50.000 9.84 0.00 34.00 3.69
3018 5090 2.959707 GTGATATCGACCACCTCTCCTT 59.040 50.000 0.00 0.00 0.00 3.36
3019 5091 3.004944 GTGATATCGACCACCTCTCCTTC 59.995 52.174 0.00 0.00 0.00 3.46
3020 5092 3.117474 TGATATCGACCACCTCTCCTTCT 60.117 47.826 0.00 0.00 0.00 2.85
3021 5093 1.770294 ATCGACCACCTCTCCTTCTC 58.230 55.000 0.00 0.00 0.00 2.87
3022 5094 0.323542 TCGACCACCTCTCCTTCTCC 60.324 60.000 0.00 0.00 0.00 3.71
3023 5095 1.658686 CGACCACCTCTCCTTCTCCG 61.659 65.000 0.00 0.00 0.00 4.63
3024 5096 0.323542 GACCACCTCTCCTTCTCCGA 60.324 60.000 0.00 0.00 0.00 4.55
3025 5097 0.323908 ACCACCTCTCCTTCTCCGAG 60.324 60.000 0.00 0.00 0.00 4.63
3026 5098 0.033991 CCACCTCTCCTTCTCCGAGA 60.034 60.000 0.00 0.00 35.14 4.04
3032 5104 2.660572 TCTCCTTCTCCGAGAGATTGG 58.339 52.381 0.00 9.53 38.56 3.16
3033 5105 2.024846 TCTCCTTCTCCGAGAGATTGGT 60.025 50.000 15.78 0.00 38.56 3.67
3034 5106 2.360801 CTCCTTCTCCGAGAGATTGGTC 59.639 54.545 15.78 0.00 38.56 4.02
3035 5107 1.066303 CCTTCTCCGAGAGATTGGTCG 59.934 57.143 0.00 0.00 38.56 4.79
3036 5108 2.017782 CTTCTCCGAGAGATTGGTCGA 58.982 52.381 0.00 0.00 38.56 4.20
3037 5109 2.124277 TCTCCGAGAGATTGGTCGAA 57.876 50.000 0.00 0.00 38.50 3.71
3038 5110 1.743958 TCTCCGAGAGATTGGTCGAAC 59.256 52.381 0.00 0.00 38.50 3.95
3039 5111 1.472878 CTCCGAGAGATTGGTCGAACA 59.527 52.381 0.00 0.00 38.50 3.18
3040 5112 1.890489 TCCGAGAGATTGGTCGAACAA 59.110 47.619 19.88 19.88 38.50 2.83
3041 5113 1.993370 CCGAGAGATTGGTCGAACAAC 59.007 52.381 20.01 12.50 38.50 3.32
3042 5114 2.609491 CCGAGAGATTGGTCGAACAACA 60.609 50.000 20.01 0.00 38.50 3.33
3043 5115 3.057019 CGAGAGATTGGTCGAACAACAA 58.943 45.455 20.01 6.80 38.50 2.83
3044 5116 3.121944 CGAGAGATTGGTCGAACAACAAG 59.878 47.826 20.01 3.38 38.50 3.16
3045 5117 4.058817 GAGAGATTGGTCGAACAACAAGT 58.941 43.478 20.01 1.53 32.39 3.16
3046 5118 4.451900 AGAGATTGGTCGAACAACAAGTT 58.548 39.130 20.01 1.07 44.93 2.66
3066 5138 8.561212 ACAAGTTCTCGTATATCTATCTGACAC 58.439 37.037 0.00 0.00 0.00 3.67
3067 5139 8.779303 CAAGTTCTCGTATATCTATCTGACACT 58.221 37.037 0.00 0.00 0.00 3.55
3068 5140 9.999660 AAGTTCTCGTATATCTATCTGACACTA 57.000 33.333 0.00 0.00 0.00 2.74
3069 5141 9.426837 AGTTCTCGTATATCTATCTGACACTAC 57.573 37.037 0.00 0.00 0.00 2.73
3070 5142 8.658609 GTTCTCGTATATCTATCTGACACTACC 58.341 40.741 0.00 0.00 0.00 3.18
3071 5143 7.034397 TCTCGTATATCTATCTGACACTACCG 58.966 42.308 0.00 0.00 0.00 4.02
3072 5144 6.104665 TCGTATATCTATCTGACACTACCGG 58.895 44.000 0.00 0.00 0.00 5.28
3073 5145 5.220624 CGTATATCTATCTGACACTACCGGC 60.221 48.000 0.00 0.00 0.00 6.13
3074 5146 2.730934 TCTATCTGACACTACCGGCT 57.269 50.000 0.00 0.00 0.00 5.52
3075 5147 3.851458 TCTATCTGACACTACCGGCTA 57.149 47.619 0.00 0.00 0.00 3.93
3076 5148 3.474600 TCTATCTGACACTACCGGCTAC 58.525 50.000 0.00 0.00 0.00 3.58
3077 5149 2.139323 ATCTGACACTACCGGCTACA 57.861 50.000 0.00 0.00 0.00 2.74
3078 5150 2.139323 TCTGACACTACCGGCTACAT 57.861 50.000 0.00 0.00 0.00 2.29
3079 5151 3.286329 TCTGACACTACCGGCTACATA 57.714 47.619 0.00 0.00 0.00 2.29
3080 5152 3.828921 TCTGACACTACCGGCTACATAT 58.171 45.455 0.00 0.00 0.00 1.78
3081 5153 4.976864 TCTGACACTACCGGCTACATATA 58.023 43.478 0.00 0.00 0.00 0.86
3082 5154 5.567430 TCTGACACTACCGGCTACATATAT 58.433 41.667 0.00 0.00 0.00 0.86
3083 5155 6.714278 TCTGACACTACCGGCTACATATATA 58.286 40.000 0.00 0.00 0.00 0.86
3084 5156 6.596888 TCTGACACTACCGGCTACATATATAC 59.403 42.308 0.00 0.00 0.00 1.47
3085 5157 6.240145 TGACACTACCGGCTACATATATACA 58.760 40.000 0.00 0.00 0.00 2.29
3086 5158 6.716173 TGACACTACCGGCTACATATATACAA 59.284 38.462 0.00 0.00 0.00 2.41
3087 5159 7.395206 TGACACTACCGGCTACATATATACAAT 59.605 37.037 0.00 0.00 0.00 2.71
3088 5160 8.812513 ACACTACCGGCTACATATATACAATA 57.187 34.615 0.00 0.00 0.00 1.90
3089 5161 9.246670 ACACTACCGGCTACATATATACAATAA 57.753 33.333 0.00 0.00 0.00 1.40
3123 5195 9.923143 TTACAAATATAATCATACGGACTCAGG 57.077 33.333 0.00 0.00 0.00 3.86
3124 5196 7.386851 ACAAATATAATCATACGGACTCAGGG 58.613 38.462 0.00 0.00 0.00 4.45
3125 5197 7.016268 ACAAATATAATCATACGGACTCAGGGT 59.984 37.037 0.00 0.00 0.00 4.34
3126 5198 6.777213 ATATAATCATACGGACTCAGGGTC 57.223 41.667 0.00 0.00 43.79 4.46
3137 5209 4.762289 GACTCAGGGTCCACATAGAATT 57.238 45.455 0.00 0.00 38.93 2.17
3138 5210 4.698575 GACTCAGGGTCCACATAGAATTC 58.301 47.826 0.00 0.00 38.93 2.17
3139 5211 4.366267 ACTCAGGGTCCACATAGAATTCT 58.634 43.478 13.56 13.56 0.00 2.40
3140 5212 4.407296 ACTCAGGGTCCACATAGAATTCTC 59.593 45.833 12.24 0.00 0.00 2.87
3141 5213 3.711704 TCAGGGTCCACATAGAATTCTCC 59.288 47.826 12.24 4.87 0.00 3.71
3142 5214 2.700897 AGGGTCCACATAGAATTCTCCG 59.299 50.000 12.24 6.86 0.00 4.63
3143 5215 2.434702 GGGTCCACATAGAATTCTCCGT 59.565 50.000 12.24 7.55 0.00 4.69
3144 5216 3.492829 GGGTCCACATAGAATTCTCCGTC 60.493 52.174 12.24 0.00 0.00 4.79
3145 5217 3.385111 GGTCCACATAGAATTCTCCGTCT 59.615 47.826 12.24 0.00 0.00 4.18
3146 5218 4.141914 GGTCCACATAGAATTCTCCGTCTT 60.142 45.833 12.24 0.00 0.00 3.01
3147 5219 5.044558 GTCCACATAGAATTCTCCGTCTTC 58.955 45.833 12.24 0.00 0.00 2.87
3148 5220 4.709886 TCCACATAGAATTCTCCGTCTTCA 59.290 41.667 12.24 0.00 0.00 3.02
3149 5221 5.046529 CCACATAGAATTCTCCGTCTTCAG 58.953 45.833 12.24 0.00 0.00 3.02
3150 5222 5.046529 CACATAGAATTCTCCGTCTTCAGG 58.953 45.833 12.24 0.00 0.00 3.86
3151 5223 4.100189 ACATAGAATTCTCCGTCTTCAGGG 59.900 45.833 12.24 0.00 0.00 4.45
3152 5224 2.821437 AGAATTCTCCGTCTTCAGGGA 58.179 47.619 0.88 0.00 35.21 4.20
3153 5225 3.379452 AGAATTCTCCGTCTTCAGGGAT 58.621 45.455 0.88 0.00 35.96 3.85
3154 5226 3.386402 AGAATTCTCCGTCTTCAGGGATC 59.614 47.826 0.88 0.00 35.96 3.36
3155 5227 2.231716 TTCTCCGTCTTCAGGGATCA 57.768 50.000 0.00 0.00 35.96 2.92
3156 5228 1.475403 TCTCCGTCTTCAGGGATCAC 58.525 55.000 0.00 0.00 35.96 3.06
3157 5229 0.101399 CTCCGTCTTCAGGGATCACG 59.899 60.000 0.00 0.00 35.96 4.35
3158 5230 0.611062 TCCGTCTTCAGGGATCACGT 60.611 55.000 0.00 0.00 31.23 4.49
3159 5231 0.458543 CCGTCTTCAGGGATCACGTG 60.459 60.000 9.94 9.94 36.32 4.49
3160 5232 0.458543 CGTCTTCAGGGATCACGTGG 60.459 60.000 17.00 0.00 35.71 4.94
3161 5233 0.608640 GTCTTCAGGGATCACGTGGT 59.391 55.000 17.00 8.94 35.71 4.16
3162 5234 0.895530 TCTTCAGGGATCACGTGGTC 59.104 55.000 20.80 20.80 35.71 4.02
3163 5235 0.608130 CTTCAGGGATCACGTGGTCA 59.392 55.000 28.86 6.82 35.71 4.02
3164 5236 1.001974 CTTCAGGGATCACGTGGTCAA 59.998 52.381 28.86 14.18 35.71 3.18
3165 5237 0.608130 TCAGGGATCACGTGGTCAAG 59.392 55.000 28.86 17.61 35.71 3.02
3166 5238 0.608130 CAGGGATCACGTGGTCAAGA 59.392 55.000 28.86 2.67 0.00 3.02
3167 5239 1.001974 CAGGGATCACGTGGTCAAGAA 59.998 52.381 28.86 1.86 0.00 2.52
3168 5240 1.697432 AGGGATCACGTGGTCAAGAAA 59.303 47.619 28.86 1.05 0.00 2.52
3169 5241 2.076863 GGGATCACGTGGTCAAGAAAG 58.923 52.381 28.86 0.00 0.00 2.62
3170 5242 2.289444 GGGATCACGTGGTCAAGAAAGA 60.289 50.000 28.86 0.00 0.00 2.52
3171 5243 3.399330 GGATCACGTGGTCAAGAAAGAA 58.601 45.455 28.86 0.00 0.00 2.52
3172 5244 4.003648 GGATCACGTGGTCAAGAAAGAAT 58.996 43.478 28.86 4.40 0.00 2.40
3173 5245 4.142816 GGATCACGTGGTCAAGAAAGAATG 60.143 45.833 28.86 0.00 0.00 2.67
3174 5246 2.548057 TCACGTGGTCAAGAAAGAATGC 59.452 45.455 17.00 0.00 0.00 3.56
3175 5247 1.880027 ACGTGGTCAAGAAAGAATGCC 59.120 47.619 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.141019 GCACGAGCTAACCGGATCA 59.859 57.895 9.46 0.00 37.91 2.92
135 136 1.530891 GCATGGGCCTGAGATGCAT 60.531 57.895 18.65 0.00 41.78 3.96
136 137 2.124024 GCATGGGCCTGAGATGCA 60.124 61.111 18.65 0.00 41.78 3.96
137 138 1.324740 TTTGCATGGGCCTGAGATGC 61.325 55.000 17.19 17.19 42.38 3.91
138 139 1.068588 CATTTGCATGGGCCTGAGATG 59.931 52.381 4.53 0.37 40.13 2.90
139 140 1.410004 CATTTGCATGGGCCTGAGAT 58.590 50.000 4.53 0.00 40.13 2.75
140 141 1.324740 GCATTTGCATGGGCCTGAGA 61.325 55.000 4.53 0.00 41.59 3.27
141 142 1.143183 GCATTTGCATGGGCCTGAG 59.857 57.895 4.53 0.00 41.59 3.35
142 143 3.301070 GCATTTGCATGGGCCTGA 58.699 55.556 4.53 0.00 41.59 3.86
238 240 2.547211 AGTATAGGCTAGCACGTACACG 59.453 50.000 18.24 0.00 46.33 4.49
278 280 6.072508 GGAATAGTGCATGTTTGTTTCTGAGA 60.073 38.462 0.00 0.00 0.00 3.27
281 283 5.047802 AGGGAATAGTGCATGTTTGTTTCTG 60.048 40.000 0.00 0.00 0.00 3.02
296 298 0.384669 GCGAGCACGTAGGGAATAGT 59.615 55.000 5.23 0.00 41.98 2.12
300 302 0.889994 TTTAGCGAGCACGTAGGGAA 59.110 50.000 5.23 0.00 41.98 3.97
319 321 5.301045 CCCAATGTCAGATAATCATGTTGCT 59.699 40.000 0.00 0.00 0.00 3.91
410 412 5.023533 TCCAAAATATCTTGTCTCCTCCG 57.976 43.478 0.00 0.00 0.00 4.63
430 432 2.435059 GCGGGTGTGCTCTCTTCC 60.435 66.667 0.00 0.00 0.00 3.46
445 447 0.037882 AGGACGGATGCTATGATGCG 60.038 55.000 0.00 0.00 42.34 4.73
454 456 1.797211 CGGGAGTAGAGGACGGATGC 61.797 65.000 0.00 0.00 0.00 3.91
455 457 0.465824 ACGGGAGTAGAGGACGGATG 60.466 60.000 0.00 0.00 44.60 3.51
456 458 1.135094 TACGGGAGTAGAGGACGGAT 58.865 55.000 0.00 0.00 46.17 4.18
464 466 6.788220 TGCACTTAAGCTTTACGGGAGTAGA 61.788 44.000 3.20 0.00 40.08 2.59
533 569 4.672862 GTCTCAGATGATGATAACGTGACG 59.327 45.833 2.24 2.24 37.28 4.35
537 573 5.843673 ACAGTCTCAGATGATGATAACGT 57.156 39.130 0.00 0.00 37.28 3.99
609 765 0.107800 TCGTTCCTCTCCTCGATCGT 60.108 55.000 15.94 0.00 0.00 3.73
741 941 0.038251 CAGAGCGTGCTCCAACAGTA 60.038 55.000 17.76 0.00 43.70 2.74
771 971 5.238432 GTGATATATCATTGAAACCGTGCCA 59.762 40.000 18.18 0.00 39.30 4.92
818 1020 1.821332 CGATCCCCAGCCTTCTTGC 60.821 63.158 0.00 0.00 0.00 4.01
1088 1757 3.775654 CTCTCCACCAGGACCGCC 61.776 72.222 0.00 0.00 39.61 6.13
1135 1842 1.887088 GCCGTCCATCCTAGCTAGCTA 60.887 57.143 22.85 22.85 0.00 3.32
1363 2082 1.123077 TATGAGTTGAGCTGGCGGAT 58.877 50.000 0.00 0.00 0.00 4.18
1541 2381 0.457853 GATGCGCGACAGAAGGTACA 60.458 55.000 12.10 0.00 0.00 2.90
1543 2383 1.226575 CGATGCGCGACAGAAGGTA 60.227 57.895 12.10 0.00 44.57 3.08
1568 2408 3.414700 CGCCGCGCTTCTTCTTGT 61.415 61.111 5.56 0.00 0.00 3.16
1642 2786 2.366640 TCCTCCTCCACTTCCTATCG 57.633 55.000 0.00 0.00 0.00 2.92
1645 2789 2.023888 CCTCTTCCTCCTCCACTTCCTA 60.024 54.545 0.00 0.00 0.00 2.94
1804 3634 4.514577 CTCGTCGAGCCGGGCAAT 62.515 66.667 23.09 0.00 0.00 3.56
1887 3717 1.669795 GCAAAATCACGGGAAGGCAAG 60.670 52.381 0.00 0.00 0.00 4.01
1978 3921 2.124693 GCCAGACTCTAGCTCCGCT 61.125 63.158 0.00 0.00 43.41 5.52
2106 4162 0.966920 CGGTCCCACTGTCAGTTAGT 59.033 55.000 1.67 0.00 0.00 2.24
2242 4310 4.505922 TGCCAAACTTAAAGAAAATGCGTG 59.494 37.500 0.00 0.00 0.00 5.34
2252 4320 4.414852 CATCGATGGTGCCAAACTTAAAG 58.585 43.478 17.96 0.00 0.00 1.85
2257 4325 0.322816 AGCATCGATGGTGCCAAACT 60.323 50.000 28.07 10.39 43.50 2.66
2258 4326 2.183409 AGCATCGATGGTGCCAAAC 58.817 52.632 28.07 8.20 43.50 2.93
2259 4327 4.740922 AGCATCGATGGTGCCAAA 57.259 50.000 28.07 0.00 43.50 3.28
2296 4368 4.163552 TGTTCTGTACACATTCGACGATC 58.836 43.478 0.00 0.00 0.00 3.69
2297 4369 4.166523 CTGTTCTGTACACATTCGACGAT 58.833 43.478 0.00 0.00 32.10 3.73
2298 4370 3.004002 ACTGTTCTGTACACATTCGACGA 59.996 43.478 0.00 0.00 32.10 4.20
2299 4371 3.305964 ACTGTTCTGTACACATTCGACG 58.694 45.455 0.00 0.00 32.10 5.12
2300 4372 4.383052 CAGACTGTTCTGTACACATTCGAC 59.617 45.833 0.00 0.00 43.95 4.20
2301 4373 4.546570 CAGACTGTTCTGTACACATTCGA 58.453 43.478 0.00 0.00 43.95 3.71
2302 4374 4.893036 CAGACTGTTCTGTACACATTCG 57.107 45.455 0.00 0.00 43.95 3.34
2313 4385 3.197333 CCATGATCTGACCAGACTGTTCT 59.803 47.826 1.31 0.00 40.75 3.01
2314 4386 3.055530 ACCATGATCTGACCAGACTGTTC 60.056 47.826 1.31 0.00 40.75 3.18
2315 4387 2.909006 ACCATGATCTGACCAGACTGTT 59.091 45.455 1.31 0.00 40.75 3.16
2316 4388 2.235650 CACCATGATCTGACCAGACTGT 59.764 50.000 1.31 0.00 40.75 3.55
2317 4389 2.419713 CCACCATGATCTGACCAGACTG 60.420 54.545 1.31 0.00 40.75 3.51
2318 4390 1.836166 CCACCATGATCTGACCAGACT 59.164 52.381 1.31 0.00 40.75 3.24
2319 4391 1.833630 TCCACCATGATCTGACCAGAC 59.166 52.381 1.31 0.00 40.75 3.51
2320 4392 2.113807 CTCCACCATGATCTGACCAGA 58.886 52.381 1.83 1.83 42.37 3.86
2321 4393 2.102757 CTCTCCACCATGATCTGACCAG 59.897 54.545 0.00 0.00 0.00 4.00
2322 4394 2.113807 CTCTCCACCATGATCTGACCA 58.886 52.381 0.00 0.00 0.00 4.02
2323 4395 2.114616 ACTCTCCACCATGATCTGACC 58.885 52.381 0.00 0.00 0.00 4.02
2324 4396 3.957497 AGTACTCTCCACCATGATCTGAC 59.043 47.826 0.00 0.00 0.00 3.51
2325 4397 4.256983 AGTACTCTCCACCATGATCTGA 57.743 45.455 0.00 0.00 0.00 3.27
2326 4398 4.648762 AGAAGTACTCTCCACCATGATCTG 59.351 45.833 0.00 0.00 0.00 2.90
2327 4399 4.648762 CAGAAGTACTCTCCACCATGATCT 59.351 45.833 0.00 0.00 29.07 2.75
2328 4400 4.404073 ACAGAAGTACTCTCCACCATGATC 59.596 45.833 0.00 0.00 29.07 2.92
2329 4401 4.357325 ACAGAAGTACTCTCCACCATGAT 58.643 43.478 0.00 0.00 29.07 2.45
2330 4402 3.779444 ACAGAAGTACTCTCCACCATGA 58.221 45.455 0.00 0.00 29.07 3.07
2331 4403 5.860941 ATACAGAAGTACTCTCCACCATG 57.139 43.478 0.00 0.00 31.96 3.66
2332 4404 5.129485 CCAATACAGAAGTACTCTCCACCAT 59.871 44.000 0.00 0.00 31.96 3.55
2333 4405 4.466370 CCAATACAGAAGTACTCTCCACCA 59.534 45.833 0.00 0.00 31.96 4.17
2334 4406 4.680975 GCCAATACAGAAGTACTCTCCACC 60.681 50.000 0.00 0.00 31.96 4.61
2335 4407 4.160626 AGCCAATACAGAAGTACTCTCCAC 59.839 45.833 0.00 0.00 31.96 4.02
2336 4408 4.353777 AGCCAATACAGAAGTACTCTCCA 58.646 43.478 0.00 0.00 31.96 3.86
2337 4409 4.402793 TGAGCCAATACAGAAGTACTCTCC 59.597 45.833 0.00 0.00 31.96 3.71
2338 4410 5.584253 TGAGCCAATACAGAAGTACTCTC 57.416 43.478 0.00 0.00 31.96 3.20
2339 4411 5.658634 TCATGAGCCAATACAGAAGTACTCT 59.341 40.000 0.00 0.00 31.96 3.24
2340 4412 5.907207 TCATGAGCCAATACAGAAGTACTC 58.093 41.667 0.00 0.00 31.96 2.59
2341 4413 5.939764 TCATGAGCCAATACAGAAGTACT 57.060 39.130 0.00 0.00 31.96 2.73
2342 4414 6.201806 GTGATCATGAGCCAATACAGAAGTAC 59.798 42.308 8.78 0.00 31.96 2.73
2343 4415 6.098838 AGTGATCATGAGCCAATACAGAAGTA 59.901 38.462 8.78 0.00 34.10 2.24
2344 4416 5.104610 AGTGATCATGAGCCAATACAGAAGT 60.105 40.000 8.78 0.00 0.00 3.01
2345 4417 5.236695 CAGTGATCATGAGCCAATACAGAAG 59.763 44.000 8.78 0.00 0.00 2.85
2346 4418 5.121105 CAGTGATCATGAGCCAATACAGAA 58.879 41.667 8.78 0.00 0.00 3.02
2347 4419 4.443881 CCAGTGATCATGAGCCAATACAGA 60.444 45.833 8.78 0.00 0.00 3.41
2348 4420 3.813724 CCAGTGATCATGAGCCAATACAG 59.186 47.826 8.78 0.00 0.00 2.74
2349 4421 3.200605 ACCAGTGATCATGAGCCAATACA 59.799 43.478 8.78 0.00 0.00 2.29
2350 4422 3.813443 ACCAGTGATCATGAGCCAATAC 58.187 45.455 8.78 0.00 0.00 1.89
2351 4423 4.901250 TCTACCAGTGATCATGAGCCAATA 59.099 41.667 8.78 0.00 0.00 1.90
2352 4424 3.713248 TCTACCAGTGATCATGAGCCAAT 59.287 43.478 8.78 1.72 0.00 3.16
2353 4425 3.106827 TCTACCAGTGATCATGAGCCAA 58.893 45.455 8.78 0.00 0.00 4.52
2354 4426 2.750814 TCTACCAGTGATCATGAGCCA 58.249 47.619 8.78 2.36 0.00 4.75
2355 4427 3.827008 TTCTACCAGTGATCATGAGCC 57.173 47.619 8.78 0.00 0.00 4.70
2356 4428 5.065731 CCTTTTTCTACCAGTGATCATGAGC 59.934 44.000 3.40 3.40 0.00 4.26
2357 4429 5.587844 CCCTTTTTCTACCAGTGATCATGAG 59.412 44.000 0.00 0.00 0.00 2.90
2358 4430 5.500234 CCCTTTTTCTACCAGTGATCATGA 58.500 41.667 0.00 0.00 0.00 3.07
2359 4431 4.096984 GCCCTTTTTCTACCAGTGATCATG 59.903 45.833 0.00 0.00 0.00 3.07
2360 4432 4.273318 GCCCTTTTTCTACCAGTGATCAT 58.727 43.478 0.00 0.00 0.00 2.45
2361 4433 3.561313 GGCCCTTTTTCTACCAGTGATCA 60.561 47.826 0.00 0.00 0.00 2.92
2362 4434 3.017442 GGCCCTTTTTCTACCAGTGATC 58.983 50.000 0.00 0.00 0.00 2.92
2363 4435 2.649816 AGGCCCTTTTTCTACCAGTGAT 59.350 45.455 0.00 0.00 0.00 3.06
2364 4436 2.062636 AGGCCCTTTTTCTACCAGTGA 58.937 47.619 0.00 0.00 0.00 3.41
2365 4437 2.586648 AGGCCCTTTTTCTACCAGTG 57.413 50.000 0.00 0.00 0.00 3.66
2366 4438 5.037598 ACTATAGGCCCTTTTTCTACCAGT 58.962 41.667 0.00 0.00 0.00 4.00
2367 4439 5.454897 GGACTATAGGCCCTTTTTCTACCAG 60.455 48.000 14.46 0.00 0.00 4.00
2368 4440 4.411212 GGACTATAGGCCCTTTTTCTACCA 59.589 45.833 14.46 0.00 0.00 3.25
2369 4441 4.202440 GGGACTATAGGCCCTTTTTCTACC 60.202 50.000 33.73 5.44 41.31 3.18
2370 4442 4.502777 CGGGACTATAGGCCCTTTTTCTAC 60.503 50.000 36.19 11.37 42.40 2.59
2371 4443 3.644738 CGGGACTATAGGCCCTTTTTCTA 59.355 47.826 36.19 0.00 42.40 2.10
2372 4444 2.438392 CGGGACTATAGGCCCTTTTTCT 59.562 50.000 36.19 0.00 42.40 2.52
2373 4445 2.486727 CCGGGACTATAGGCCCTTTTTC 60.487 54.545 36.19 13.48 42.40 2.29
2374 4446 1.493446 CCGGGACTATAGGCCCTTTTT 59.507 52.381 36.19 0.00 42.40 1.94
2375 4447 1.137697 CCGGGACTATAGGCCCTTTT 58.862 55.000 36.19 0.00 42.40 2.27
2376 4448 0.030399 ACCGGGACTATAGGCCCTTT 60.030 55.000 36.19 22.52 42.40 3.11
2377 4449 0.030399 AACCGGGACTATAGGCCCTT 60.030 55.000 36.19 24.27 42.40 3.95
2378 4450 0.471401 GAACCGGGACTATAGGCCCT 60.471 60.000 36.19 21.66 42.40 5.19
2379 4451 1.813728 CGAACCGGGACTATAGGCCC 61.814 65.000 31.77 31.77 41.11 5.80
2380 4452 1.111715 ACGAACCGGGACTATAGGCC 61.112 60.000 17.25 17.25 0.00 5.19
2381 4453 1.609208 TACGAACCGGGACTATAGGC 58.391 55.000 6.32 0.00 0.00 3.93
2382 4454 2.555757 CCTTACGAACCGGGACTATAGG 59.444 54.545 6.32 1.59 0.00 2.57
2383 4455 2.555757 CCCTTACGAACCGGGACTATAG 59.444 54.545 6.32 0.00 40.55 1.31
2384 4456 2.091885 ACCCTTACGAACCGGGACTATA 60.092 50.000 6.32 0.00 40.55 1.31
2385 4457 1.342374 ACCCTTACGAACCGGGACTAT 60.342 52.381 6.32 0.00 40.55 2.12
2386 4458 0.039618 ACCCTTACGAACCGGGACTA 59.960 55.000 6.32 0.00 40.55 2.59
2387 4459 1.228988 ACCCTTACGAACCGGGACT 60.229 57.895 6.32 0.00 40.55 3.85
2388 4460 1.216444 GACCCTTACGAACCGGGAC 59.784 63.158 6.32 0.00 40.55 4.46
2389 4461 0.542702 AAGACCCTTACGAACCGGGA 60.543 55.000 6.32 0.00 40.55 5.14
2390 4462 0.322648 AAAGACCCTTACGAACCGGG 59.677 55.000 6.32 0.00 43.79 5.73
2391 4463 2.232208 ACTAAAGACCCTTACGAACCGG 59.768 50.000 0.00 0.00 0.00 5.28
2392 4464 3.505836 GACTAAAGACCCTTACGAACCG 58.494 50.000 0.00 0.00 0.00 4.44
2393 4465 3.368843 GGGACTAAAGACCCTTACGAACC 60.369 52.174 9.90 0.00 44.84 3.62
2394 4466 3.674410 CGGGACTAAAGACCCTTACGAAC 60.674 52.174 14.31 0.00 45.84 3.95
2395 4467 2.493278 CGGGACTAAAGACCCTTACGAA 59.507 50.000 14.31 0.00 45.84 3.85
2396 4468 2.094675 CGGGACTAAAGACCCTTACGA 58.905 52.381 14.31 0.00 45.84 3.43
2397 4469 1.135721 CCGGGACTAAAGACCCTTACG 59.864 57.143 14.31 2.80 45.84 3.18
2398 4470 2.182827 ACCGGGACTAAAGACCCTTAC 58.817 52.381 6.32 0.00 45.84 2.34
2399 4471 2.629017 ACCGGGACTAAAGACCCTTA 57.371 50.000 6.32 0.00 45.84 2.69
2400 4472 1.627329 GAACCGGGACTAAAGACCCTT 59.373 52.381 6.32 4.28 45.84 3.95
2401 4473 1.273759 GAACCGGGACTAAAGACCCT 58.726 55.000 6.32 0.00 45.84 4.34
2402 4474 0.251354 GGAACCGGGACTAAAGACCC 59.749 60.000 6.32 7.38 44.81 4.46
2403 4475 0.108472 CGGAACCGGGACTAAAGACC 60.108 60.000 6.32 0.00 35.56 3.85
2404 4476 3.430779 CGGAACCGGGACTAAAGAC 57.569 57.895 6.32 0.00 35.56 3.01
2421 4493 0.319405 ACACTTTAGTCCCGGTTCCG 59.681 55.000 0.00 4.08 0.00 4.30
2422 4494 1.670967 CGACACTTTAGTCCCGGTTCC 60.671 57.143 0.00 0.00 35.07 3.62
2423 4495 1.670967 CCGACACTTTAGTCCCGGTTC 60.671 57.143 0.00 0.00 36.16 3.62
2424 4496 0.319405 CCGACACTTTAGTCCCGGTT 59.681 55.000 0.00 0.00 36.16 4.44
2425 4497 0.829182 ACCGACACTTTAGTCCCGGT 60.829 55.000 15.28 15.28 43.62 5.28
2426 4498 1.135286 GTACCGACACTTTAGTCCCGG 60.135 57.143 14.31 14.31 42.25 5.73
2427 4499 1.815003 AGTACCGACACTTTAGTCCCG 59.185 52.381 0.00 0.00 35.07 5.14
2428 4500 5.588958 ATTAGTACCGACACTTTAGTCCC 57.411 43.478 0.00 0.00 35.07 4.46
2429 4501 6.499172 GGTATTAGTACCGACACTTTAGTCC 58.501 44.000 0.00 0.00 40.95 3.85
2456 4528 1.202769 TGAACCGGGACTAAAGGGGG 61.203 60.000 6.32 0.00 0.00 5.40
2457 4529 0.694196 TTGAACCGGGACTAAAGGGG 59.306 55.000 6.32 0.00 0.00 4.79
2458 4530 2.640184 GATTGAACCGGGACTAAAGGG 58.360 52.381 6.32 0.00 0.00 3.95
2459 4531 2.026636 TGGATTGAACCGGGACTAAAGG 60.027 50.000 6.32 0.00 0.00 3.11
2460 4532 3.055385 TCTGGATTGAACCGGGACTAAAG 60.055 47.826 6.32 0.00 36.97 1.85
2461 4533 2.907696 TCTGGATTGAACCGGGACTAAA 59.092 45.455 6.32 0.00 36.97 1.85
2462 4534 2.542550 TCTGGATTGAACCGGGACTAA 58.457 47.619 6.32 0.00 36.97 2.24
2463 4535 2.235402 GTTCTGGATTGAACCGGGACTA 59.765 50.000 6.32 0.00 40.62 2.59
2464 4536 1.003233 GTTCTGGATTGAACCGGGACT 59.997 52.381 6.32 0.00 40.62 3.85
2465 4537 1.450025 GTTCTGGATTGAACCGGGAC 58.550 55.000 6.32 0.00 40.10 4.46
2466 4538 3.948735 GTTCTGGATTGAACCGGGA 57.051 52.632 6.32 0.00 40.10 5.14
2471 4543 1.003233 AGTCCCGGTTCTGGATTGAAC 59.997 52.381 0.00 0.00 43.88 3.18
2472 4544 1.358152 AGTCCCGGTTCTGGATTGAA 58.642 50.000 0.00 0.00 33.65 2.69
2473 4545 2.241281 TAGTCCCGGTTCTGGATTGA 57.759 50.000 0.00 0.00 33.65 2.57
2474 4546 3.270877 CTTTAGTCCCGGTTCTGGATTG 58.729 50.000 0.00 0.00 33.65 2.67
2475 4547 2.238898 CCTTTAGTCCCGGTTCTGGATT 59.761 50.000 0.00 0.00 33.65 3.01
2476 4548 1.838077 CCTTTAGTCCCGGTTCTGGAT 59.162 52.381 0.00 0.00 33.65 3.41
2477 4549 1.272807 CCTTTAGTCCCGGTTCTGGA 58.727 55.000 0.00 0.00 0.00 3.86
2478 4550 0.392595 GCCTTTAGTCCCGGTTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
2479 4551 0.392595 GGCCTTTAGTCCCGGTTCTG 60.393 60.000 0.00 0.00 0.00 3.02
2480 4552 1.559965 GGGCCTTTAGTCCCGGTTCT 61.560 60.000 0.84 0.15 32.00 3.01
2481 4553 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
2482 4554 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
2486 4558 1.608154 GTGGAGGGCCTTTAGTCCC 59.392 63.158 7.89 3.10 42.94 4.46
2487 4559 1.221021 CGTGGAGGGCCTTTAGTCC 59.779 63.158 7.89 4.32 34.31 3.85
2488 4560 0.391263 CACGTGGAGGGCCTTTAGTC 60.391 60.000 7.89 0.00 34.31 2.59
2489 4561 1.677552 CACGTGGAGGGCCTTTAGT 59.322 57.895 7.89 3.03 34.31 2.24
2490 4562 1.078426 CCACGTGGAGGGCCTTTAG 60.078 63.158 31.31 2.32 37.39 1.85
2491 4563 2.598787 CCCACGTGGAGGGCCTTTA 61.599 63.158 36.07 0.00 39.96 1.85
2492 4564 3.966543 CCCACGTGGAGGGCCTTT 61.967 66.667 36.07 0.00 39.96 3.11
2510 4582 4.694233 ACTGGGCTCTGCGCACTG 62.694 66.667 5.66 2.72 46.09 3.66
2511 4583 4.385405 GACTGGGCTCTGCGCACT 62.385 66.667 5.66 0.00 46.09 4.40
2512 4584 4.687215 TGACTGGGCTCTGCGCAC 62.687 66.667 5.66 0.00 46.09 5.34
2515 4587 3.368190 CTCCTGACTGGGCTCTGCG 62.368 68.421 0.00 0.00 36.20 5.18
2516 4588 1.986757 TCTCCTGACTGGGCTCTGC 60.987 63.158 0.00 0.00 36.20 4.26
2517 4589 1.612395 GGTCTCCTGACTGGGCTCTG 61.612 65.000 0.00 0.00 42.54 3.35
2518 4590 1.305718 GGTCTCCTGACTGGGCTCT 60.306 63.158 0.00 0.00 42.54 4.09
2519 4591 2.363172 GGGTCTCCTGACTGGGCTC 61.363 68.421 0.00 0.00 42.54 4.70
2520 4592 2.284995 GGGTCTCCTGACTGGGCT 60.285 66.667 0.00 0.00 42.54 5.19
2521 4593 1.492993 AAAGGGTCTCCTGACTGGGC 61.493 60.000 0.00 0.00 44.07 5.36
2522 4594 0.326264 CAAAGGGTCTCCTGACTGGG 59.674 60.000 0.00 0.00 44.07 4.45
2523 4595 0.326264 CCAAAGGGTCTCCTGACTGG 59.674 60.000 0.00 0.00 44.07 4.00
2524 4596 3.944476 CCAAAGGGTCTCCTGACTG 57.056 57.895 0.00 0.00 44.07 3.51
2535 4607 2.282887 CCAACCGGGACCAAAGGG 60.283 66.667 6.32 0.00 40.01 3.95
2536 4608 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
2537 4609 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
2538 4610 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
2539 4611 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
2554 4626 2.487274 TATTGGTCCCGGTTGGTGCC 62.487 60.000 0.00 0.00 34.77 5.01
2555 4627 1.001887 TATTGGTCCCGGTTGGTGC 60.002 57.895 0.00 0.00 34.77 5.01
2556 4628 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
2557 4629 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
2558 4630 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
2559 4631 0.106719 ATGCCTATTGGTCCCGGTTG 60.107 55.000 0.00 0.00 35.27 3.77
2560 4632 0.182775 GATGCCTATTGGTCCCGGTT 59.817 55.000 0.00 0.00 35.27 4.44
2561 4633 1.705997 GGATGCCTATTGGTCCCGGT 61.706 60.000 0.00 0.00 35.27 5.28
2562 4634 1.073199 GGATGCCTATTGGTCCCGG 59.927 63.158 0.00 0.00 35.27 5.73
2563 4635 0.535102 GTGGATGCCTATTGGTCCCG 60.535 60.000 1.28 0.00 35.27 5.14
2564 4636 3.421567 GTGGATGCCTATTGGTCCC 57.578 57.895 1.28 0.00 35.27 4.46
2870 4942 0.604073 TCGACCAAGCACGGACATAA 59.396 50.000 0.00 0.00 0.00 1.90
2871 4943 0.108992 GTCGACCAAGCACGGACATA 60.109 55.000 3.51 0.00 0.00 2.29
2872 4944 1.374252 GTCGACCAAGCACGGACAT 60.374 57.895 3.51 0.00 0.00 3.06
2873 4945 2.028484 GTCGACCAAGCACGGACA 59.972 61.111 3.51 0.00 0.00 4.02
2874 4946 3.103911 CGTCGACCAAGCACGGAC 61.104 66.667 10.58 0.00 0.00 4.79
2876 4948 3.620300 TAGCGTCGACCAAGCACGG 62.620 63.158 10.58 0.00 34.04 4.94
2877 4949 2.126618 TAGCGTCGACCAAGCACG 60.127 61.111 10.58 0.00 36.60 5.34
2878 4950 2.434134 CGTAGCGTCGACCAAGCAC 61.434 63.158 10.58 7.92 0.00 4.40
2879 4951 1.576451 TACGTAGCGTCGACCAAGCA 61.576 55.000 10.58 0.00 41.54 3.91
2880 4952 1.130458 GTACGTAGCGTCGACCAAGC 61.130 60.000 10.58 7.95 41.54 4.01
2881 4953 0.445436 AGTACGTAGCGTCGACCAAG 59.555 55.000 10.58 0.00 41.54 3.61
2882 4954 1.720805 TAGTACGTAGCGTCGACCAA 58.279 50.000 10.58 0.00 41.54 3.67
2883 4955 1.939974 ATAGTACGTAGCGTCGACCA 58.060 50.000 10.58 0.00 41.54 4.02
2884 4956 2.794910 TGTATAGTACGTAGCGTCGACC 59.205 50.000 10.58 2.76 41.54 4.79
2885 4957 4.637574 ATGTATAGTACGTAGCGTCGAC 57.362 45.455 5.18 5.18 41.54 4.20
2886 4958 4.320953 CGTATGTATAGTACGTAGCGTCGA 59.679 45.833 10.18 0.00 41.54 4.20
2887 4959 4.550193 CGTATGTATAGTACGTAGCGTCG 58.450 47.826 0.00 2.37 41.54 5.12
2901 4973 9.033711 TGTCTAGTCCTCTCTATACGTATGTAT 57.966 37.037 18.37 12.18 43.62 2.29
2902 4974 8.303156 GTGTCTAGTCCTCTCTATACGTATGTA 58.697 40.741 18.37 5.04 34.45 2.29
2903 4975 7.153985 GTGTCTAGTCCTCTCTATACGTATGT 58.846 42.308 18.37 0.00 0.00 2.29
2904 4976 6.308524 CGTGTCTAGTCCTCTCTATACGTATG 59.691 46.154 18.37 8.29 0.00 2.39
2905 4977 6.389091 CGTGTCTAGTCCTCTCTATACGTAT 58.611 44.000 13.54 13.54 0.00 3.06
2906 4978 5.767269 CGTGTCTAGTCCTCTCTATACGTA 58.233 45.833 0.00 0.00 0.00 3.57
2907 4979 4.619973 CGTGTCTAGTCCTCTCTATACGT 58.380 47.826 0.00 0.00 0.00 3.57
2908 4980 3.429543 GCGTGTCTAGTCCTCTCTATACG 59.570 52.174 0.00 0.00 0.00 3.06
2909 4981 4.634199 AGCGTGTCTAGTCCTCTCTATAC 58.366 47.826 0.00 0.00 0.00 1.47
2910 4982 4.959560 AGCGTGTCTAGTCCTCTCTATA 57.040 45.455 0.00 0.00 0.00 1.31
2911 4983 3.849563 AGCGTGTCTAGTCCTCTCTAT 57.150 47.619 0.00 0.00 0.00 1.98
2912 4984 3.493002 GCTAGCGTGTCTAGTCCTCTCTA 60.493 52.174 0.00 0.00 45.22 2.43
2913 4985 2.743838 GCTAGCGTGTCTAGTCCTCTCT 60.744 54.545 0.00 0.00 45.22 3.10
2914 4986 1.600485 GCTAGCGTGTCTAGTCCTCTC 59.400 57.143 0.00 0.00 45.22 3.20
2915 4987 1.210967 AGCTAGCGTGTCTAGTCCTCT 59.789 52.381 9.55 0.00 45.22 3.69
2916 4988 1.670791 AGCTAGCGTGTCTAGTCCTC 58.329 55.000 9.55 0.00 45.22 3.71
2917 4989 2.841215 CTAGCTAGCGTGTCTAGTCCT 58.159 52.381 8.05 0.00 45.22 3.85
2918 4990 1.264826 GCTAGCTAGCGTGTCTAGTCC 59.735 57.143 28.89 0.45 45.22 3.85
2919 4991 2.673976 GCTAGCTAGCGTGTCTAGTC 57.326 55.000 28.89 0.98 45.22 2.59
2938 5010 5.694910 TCTGTTTCCTTCGTTTGCTTACTAG 59.305 40.000 0.00 0.00 0.00 2.57
2939 5011 5.603596 TCTGTTTCCTTCGTTTGCTTACTA 58.396 37.500 0.00 0.00 0.00 1.82
2940 5012 4.448210 TCTGTTTCCTTCGTTTGCTTACT 58.552 39.130 0.00 0.00 0.00 2.24
2941 5013 4.806342 TCTGTTTCCTTCGTTTGCTTAC 57.194 40.909 0.00 0.00 0.00 2.34
2942 5014 5.120399 TCTTCTGTTTCCTTCGTTTGCTTA 58.880 37.500 0.00 0.00 0.00 3.09
2943 5015 3.945285 TCTTCTGTTTCCTTCGTTTGCTT 59.055 39.130 0.00 0.00 0.00 3.91
2944 5016 3.541632 TCTTCTGTTTCCTTCGTTTGCT 58.458 40.909 0.00 0.00 0.00 3.91
2945 5017 3.963383 TCTTCTGTTTCCTTCGTTTGC 57.037 42.857 0.00 0.00 0.00 3.68
2946 5018 4.211374 ACGATCTTCTGTTTCCTTCGTTTG 59.789 41.667 0.00 0.00 35.04 2.93
2947 5019 4.377897 ACGATCTTCTGTTTCCTTCGTTT 58.622 39.130 0.00 0.00 35.04 3.60
2948 5020 3.988517 GACGATCTTCTGTTTCCTTCGTT 59.011 43.478 0.00 0.00 38.34 3.85
2949 5021 3.005472 TGACGATCTTCTGTTTCCTTCGT 59.995 43.478 0.48 0.00 40.62 3.85
2950 5022 3.575630 TGACGATCTTCTGTTTCCTTCG 58.424 45.455 0.48 0.00 0.00 3.79
2951 5023 5.171476 TCATGACGATCTTCTGTTTCCTTC 58.829 41.667 0.48 0.00 0.00 3.46
2952 5024 5.152623 TCATGACGATCTTCTGTTTCCTT 57.847 39.130 0.48 0.00 0.00 3.36
2953 5025 4.808414 TCATGACGATCTTCTGTTTCCT 57.192 40.909 0.48 0.00 0.00 3.36
2954 5026 4.690748 TGTTCATGACGATCTTCTGTTTCC 59.309 41.667 0.00 0.00 0.00 3.13
2955 5027 5.845985 TGTTCATGACGATCTTCTGTTTC 57.154 39.130 0.00 0.00 0.00 2.78
2956 5028 9.770097 ATATATGTTCATGACGATCTTCTGTTT 57.230 29.630 0.00 0.00 0.00 2.83
2957 5029 9.201127 CATATATGTTCATGACGATCTTCTGTT 57.799 33.333 4.43 0.00 0.00 3.16
2958 5030 7.330454 GCATATATGTTCATGACGATCTTCTGT 59.670 37.037 14.14 0.00 0.00 3.41
2959 5031 7.330208 TGCATATATGTTCATGACGATCTTCTG 59.670 37.037 14.14 0.00 0.00 3.02
2960 5032 7.381323 TGCATATATGTTCATGACGATCTTCT 58.619 34.615 14.14 0.00 0.00 2.85
2961 5033 7.586714 TGCATATATGTTCATGACGATCTTC 57.413 36.000 14.14 0.00 0.00 2.87
2962 5034 9.091784 GTATGCATATATGTTCATGACGATCTT 57.908 33.333 10.16 0.00 0.00 2.40
2963 5035 8.253113 TGTATGCATATATGTTCATGACGATCT 58.747 33.333 10.16 0.00 0.00 2.75
2964 5036 8.411318 TGTATGCATATATGTTCATGACGATC 57.589 34.615 10.16 0.00 0.00 3.69
2965 5037 8.253113 TCTGTATGCATATATGTTCATGACGAT 58.747 33.333 10.16 0.00 0.00 3.73
2966 5038 7.601856 TCTGTATGCATATATGTTCATGACGA 58.398 34.615 10.16 5.72 0.00 4.20
2967 5039 7.756722 TCTCTGTATGCATATATGTTCATGACG 59.243 37.037 10.16 3.91 0.00 4.35
2968 5040 8.992835 TCTCTGTATGCATATATGTTCATGAC 57.007 34.615 10.16 9.09 0.00 3.06
2969 5041 9.028284 TCTCTCTGTATGCATATATGTTCATGA 57.972 33.333 10.16 0.00 0.00 3.07
2970 5042 9.649167 TTCTCTCTGTATGCATATATGTTCATG 57.351 33.333 10.16 0.00 0.00 3.07
2971 5043 9.872721 CTTCTCTCTGTATGCATATATGTTCAT 57.127 33.333 10.16 11.66 0.00 2.57
2972 5044 8.864087 ACTTCTCTCTGTATGCATATATGTTCA 58.136 33.333 10.16 5.17 0.00 3.18
2973 5045 9.138062 CACTTCTCTCTGTATGCATATATGTTC 57.862 37.037 10.16 0.00 0.00 3.18
2974 5046 8.864087 TCACTTCTCTCTGTATGCATATATGTT 58.136 33.333 10.16 5.26 0.00 2.71
2975 5047 8.414629 TCACTTCTCTCTGTATGCATATATGT 57.585 34.615 10.16 0.00 0.00 2.29
2979 5051 8.404765 CGATATCACTTCTCTCTGTATGCATAT 58.595 37.037 10.16 0.00 0.00 1.78
2980 5052 7.607991 TCGATATCACTTCTCTCTGTATGCATA 59.392 37.037 1.16 1.16 0.00 3.14
2981 5053 6.432472 TCGATATCACTTCTCTCTGTATGCAT 59.568 38.462 3.79 3.79 0.00 3.96
2982 5054 5.765182 TCGATATCACTTCTCTCTGTATGCA 59.235 40.000 3.12 0.00 0.00 3.96
2983 5055 6.083630 GTCGATATCACTTCTCTCTGTATGC 58.916 44.000 3.12 0.00 0.00 3.14
2984 5056 6.205658 TGGTCGATATCACTTCTCTCTGTATG 59.794 42.308 3.12 0.00 0.00 2.39
2985 5057 6.205853 GTGGTCGATATCACTTCTCTCTGTAT 59.794 42.308 3.12 0.00 33.64 2.29
2986 5058 5.527951 GTGGTCGATATCACTTCTCTCTGTA 59.472 44.000 3.12 0.00 33.64 2.74
2987 5059 4.336993 GTGGTCGATATCACTTCTCTCTGT 59.663 45.833 3.12 0.00 33.64 3.41
2988 5060 4.261405 GGTGGTCGATATCACTTCTCTCTG 60.261 50.000 3.12 0.00 36.90 3.35
2989 5061 3.886505 GGTGGTCGATATCACTTCTCTCT 59.113 47.826 3.12 0.00 36.90 3.10
2990 5062 3.886505 AGGTGGTCGATATCACTTCTCTC 59.113 47.826 3.12 0.74 36.90 3.20
2991 5063 3.886505 GAGGTGGTCGATATCACTTCTCT 59.113 47.826 15.82 6.90 39.21 3.10
2992 5064 4.231718 GAGGTGGTCGATATCACTTCTC 57.768 50.000 15.82 11.24 39.21 2.87
2993 5065 3.904717 AGAGGTGGTCGATATCACTTCT 58.095 45.455 18.29 18.29 45.56 2.85
2994 5066 3.004944 GGAGAGGTGGTCGATATCACTTC 59.995 52.174 15.52 15.52 41.84 3.01
2995 5067 2.959707 GGAGAGGTGGTCGATATCACTT 59.040 50.000 3.12 8.14 36.90 3.16
2996 5068 2.175931 AGGAGAGGTGGTCGATATCACT 59.824 50.000 3.12 0.81 36.90 3.41
2997 5069 2.588620 AGGAGAGGTGGTCGATATCAC 58.411 52.381 3.12 7.65 35.87 3.06
2998 5070 3.117474 AGAAGGAGAGGTGGTCGATATCA 60.117 47.826 3.12 0.00 0.00 2.15
2999 5071 3.492337 AGAAGGAGAGGTGGTCGATATC 58.508 50.000 0.00 0.00 0.00 1.63
3000 5072 3.492337 GAGAAGGAGAGGTGGTCGATAT 58.508 50.000 0.00 0.00 0.00 1.63
3001 5073 2.423088 GGAGAAGGAGAGGTGGTCGATA 60.423 54.545 0.00 0.00 0.00 2.92
3002 5074 1.686741 GGAGAAGGAGAGGTGGTCGAT 60.687 57.143 0.00 0.00 0.00 3.59
3003 5075 0.323542 GGAGAAGGAGAGGTGGTCGA 60.324 60.000 0.00 0.00 0.00 4.20
3004 5076 1.658686 CGGAGAAGGAGAGGTGGTCG 61.659 65.000 0.00 0.00 0.00 4.79
3005 5077 0.323542 TCGGAGAAGGAGAGGTGGTC 60.324 60.000 0.00 0.00 0.00 4.02
3006 5078 0.323908 CTCGGAGAAGGAGAGGTGGT 60.324 60.000 0.00 0.00 34.09 4.16
3007 5079 0.033991 TCTCGGAGAAGGAGAGGTGG 60.034 60.000 4.96 0.00 35.70 4.61
3008 5080 3.579275 TCTCGGAGAAGGAGAGGTG 57.421 57.895 4.96 0.00 35.70 4.00
3012 5084 2.024846 ACCAATCTCTCGGAGAAGGAGA 60.025 50.000 21.47 3.25 42.27 3.71
3013 5085 2.360801 GACCAATCTCTCGGAGAAGGAG 59.639 54.545 21.47 0.00 42.27 3.69
3014 5086 2.379972 GACCAATCTCTCGGAGAAGGA 58.620 52.381 21.47 4.35 42.27 3.36
3015 5087 1.066303 CGACCAATCTCTCGGAGAAGG 59.934 57.143 9.32 16.80 42.27 3.46
3016 5088 2.017782 TCGACCAATCTCTCGGAGAAG 58.982 52.381 9.32 3.93 42.27 2.85
3017 5089 2.124277 TCGACCAATCTCTCGGAGAA 57.876 50.000 9.32 1.12 42.27 2.87
3018 5090 1.743958 GTTCGACCAATCTCTCGGAGA 59.256 52.381 7.60 7.60 43.20 3.71
3019 5091 1.472878 TGTTCGACCAATCTCTCGGAG 59.527 52.381 0.00 0.00 0.00 4.63
3020 5092 1.541379 TGTTCGACCAATCTCTCGGA 58.459 50.000 0.00 0.00 0.00 4.55
3021 5093 1.993370 GTTGTTCGACCAATCTCTCGG 59.007 52.381 0.00 0.00 0.00 4.63
3022 5094 2.672714 TGTTGTTCGACCAATCTCTCG 58.327 47.619 0.00 0.00 0.00 4.04
3023 5095 4.058817 ACTTGTTGTTCGACCAATCTCTC 58.941 43.478 0.00 0.00 0.00 3.20
3024 5096 4.073293 ACTTGTTGTTCGACCAATCTCT 57.927 40.909 0.00 0.00 0.00 3.10
3025 5097 4.773510 GAACTTGTTGTTCGACCAATCTC 58.226 43.478 0.00 0.00 44.49 2.75
3026 5098 4.813296 GAACTTGTTGTTCGACCAATCT 57.187 40.909 0.00 0.00 44.49 2.40
3036 5108 9.737427 CAGATAGATATACGAGAACTTGTTGTT 57.263 33.333 0.00 0.00 42.38 2.83
3037 5109 9.121658 TCAGATAGATATACGAGAACTTGTTGT 57.878 33.333 0.00 0.00 0.00 3.32
3038 5110 9.388346 GTCAGATAGATATACGAGAACTTGTTG 57.612 37.037 0.00 0.00 0.00 3.33
3039 5111 9.121658 TGTCAGATAGATATACGAGAACTTGTT 57.878 33.333 0.00 0.00 0.00 2.83
3040 5112 8.561212 GTGTCAGATAGATATACGAGAACTTGT 58.439 37.037 0.00 0.32 0.00 3.16
3041 5113 8.779303 AGTGTCAGATAGATATACGAGAACTTG 58.221 37.037 0.00 0.00 0.00 3.16
3042 5114 8.911918 AGTGTCAGATAGATATACGAGAACTT 57.088 34.615 0.00 0.00 0.00 2.66
3043 5115 9.426837 GTAGTGTCAGATAGATATACGAGAACT 57.573 37.037 0.00 0.00 0.00 3.01
3044 5116 8.658609 GGTAGTGTCAGATAGATATACGAGAAC 58.341 40.741 0.00 0.00 0.00 3.01
3045 5117 7.544915 CGGTAGTGTCAGATAGATATACGAGAA 59.455 40.741 0.00 0.00 0.00 2.87
3046 5118 7.034397 CGGTAGTGTCAGATAGATATACGAGA 58.966 42.308 0.00 0.00 0.00 4.04
3047 5119 6.256104 CCGGTAGTGTCAGATAGATATACGAG 59.744 46.154 0.00 0.00 0.00 4.18
3048 5120 6.104665 CCGGTAGTGTCAGATAGATATACGA 58.895 44.000 0.00 0.00 0.00 3.43
3049 5121 5.220624 GCCGGTAGTGTCAGATAGATATACG 60.221 48.000 1.90 0.00 0.00 3.06
3050 5122 5.881443 AGCCGGTAGTGTCAGATAGATATAC 59.119 44.000 1.90 0.00 0.00 1.47
3051 5123 6.063496 AGCCGGTAGTGTCAGATAGATATA 57.937 41.667 1.90 0.00 0.00 0.86
3052 5124 4.924625 AGCCGGTAGTGTCAGATAGATAT 58.075 43.478 1.90 0.00 0.00 1.63
3053 5125 4.368565 AGCCGGTAGTGTCAGATAGATA 57.631 45.455 1.90 0.00 0.00 1.98
3054 5126 3.231207 AGCCGGTAGTGTCAGATAGAT 57.769 47.619 1.90 0.00 0.00 1.98
3055 5127 2.730934 AGCCGGTAGTGTCAGATAGA 57.269 50.000 1.90 0.00 0.00 1.98
3056 5128 3.211865 TGTAGCCGGTAGTGTCAGATAG 58.788 50.000 1.90 0.00 0.00 2.08
3097 5169 9.923143 CCTGAGTCCGTATGATTATATTTGTAA 57.077 33.333 0.00 0.00 0.00 2.41
3098 5170 8.528643 CCCTGAGTCCGTATGATTATATTTGTA 58.471 37.037 0.00 0.00 0.00 2.41
3099 5171 7.016268 ACCCTGAGTCCGTATGATTATATTTGT 59.984 37.037 0.00 0.00 0.00 2.83
3100 5172 7.386851 ACCCTGAGTCCGTATGATTATATTTG 58.613 38.462 0.00 0.00 0.00 2.32
3101 5173 7.554959 ACCCTGAGTCCGTATGATTATATTT 57.445 36.000 0.00 0.00 0.00 1.40
3102 5174 7.171630 GACCCTGAGTCCGTATGATTATATT 57.828 40.000 0.00 0.00 39.84 1.28
3103 5175 6.777213 GACCCTGAGTCCGTATGATTATAT 57.223 41.667 0.00 0.00 39.84 0.86
3116 5188 4.407296 AGAATTCTATGTGGACCCTGAGTC 59.593 45.833 6.06 0.00 45.51 3.36
3117 5189 4.366267 AGAATTCTATGTGGACCCTGAGT 58.634 43.478 6.06 0.00 0.00 3.41
3118 5190 4.202305 GGAGAATTCTATGTGGACCCTGAG 60.202 50.000 8.25 0.00 0.00 3.35
3119 5191 3.711704 GGAGAATTCTATGTGGACCCTGA 59.288 47.826 8.25 0.00 0.00 3.86
3120 5192 3.493350 CGGAGAATTCTATGTGGACCCTG 60.493 52.174 8.25 0.00 0.00 4.45
3121 5193 2.700897 CGGAGAATTCTATGTGGACCCT 59.299 50.000 8.25 0.00 0.00 4.34
3122 5194 2.434702 ACGGAGAATTCTATGTGGACCC 59.565 50.000 8.25 1.68 0.00 4.46
3123 5195 3.385111 AGACGGAGAATTCTATGTGGACC 59.615 47.826 8.25 2.45 0.00 4.46
3124 5196 4.657436 AGACGGAGAATTCTATGTGGAC 57.343 45.455 8.25 0.00 0.00 4.02
3125 5197 4.709886 TGAAGACGGAGAATTCTATGTGGA 59.290 41.667 8.25 0.00 0.00 4.02
3126 5198 5.011090 TGAAGACGGAGAATTCTATGTGG 57.989 43.478 8.25 0.00 0.00 4.17
3127 5199 5.046529 CCTGAAGACGGAGAATTCTATGTG 58.953 45.833 8.25 1.22 0.00 3.21
3128 5200 4.100189 CCCTGAAGACGGAGAATTCTATGT 59.900 45.833 8.25 9.81 0.00 2.29
3129 5201 4.342378 TCCCTGAAGACGGAGAATTCTATG 59.658 45.833 8.25 6.41 0.00 2.23
3130 5202 4.547671 TCCCTGAAGACGGAGAATTCTAT 58.452 43.478 8.25 0.00 0.00 1.98
3131 5203 3.977312 TCCCTGAAGACGGAGAATTCTA 58.023 45.455 8.25 0.00 0.00 2.10
3132 5204 2.821437 TCCCTGAAGACGGAGAATTCT 58.179 47.619 7.95 7.95 0.00 2.40
3133 5205 3.133003 TGATCCCTGAAGACGGAGAATTC 59.867 47.826 0.00 0.00 0.00 2.17
3134 5206 3.107601 TGATCCCTGAAGACGGAGAATT 58.892 45.455 0.00 0.00 0.00 2.17
3135 5207 2.432510 GTGATCCCTGAAGACGGAGAAT 59.567 50.000 0.00 0.00 0.00 2.40
3136 5208 1.825474 GTGATCCCTGAAGACGGAGAA 59.175 52.381 0.00 0.00 0.00 2.87
3137 5209 1.475403 GTGATCCCTGAAGACGGAGA 58.525 55.000 0.00 0.00 0.00 3.71
3138 5210 0.101399 CGTGATCCCTGAAGACGGAG 59.899 60.000 0.00 0.00 0.00 4.63
3139 5211 0.611062 ACGTGATCCCTGAAGACGGA 60.611 55.000 4.77 0.00 34.36 4.69
3140 5212 0.458543 CACGTGATCCCTGAAGACGG 60.459 60.000 10.90 0.00 34.36 4.79
3141 5213 0.458543 CCACGTGATCCCTGAAGACG 60.459 60.000 19.30 0.00 36.14 4.18
3142 5214 0.608640 ACCACGTGATCCCTGAAGAC 59.391 55.000 19.30 0.00 0.00 3.01
3143 5215 0.895530 GACCACGTGATCCCTGAAGA 59.104 55.000 19.30 0.00 0.00 2.87
3144 5216 0.608130 TGACCACGTGATCCCTGAAG 59.392 55.000 19.30 0.00 0.00 3.02
3145 5217 1.001974 CTTGACCACGTGATCCCTGAA 59.998 52.381 19.30 0.00 0.00 3.02
3146 5218 0.608130 CTTGACCACGTGATCCCTGA 59.392 55.000 19.30 0.00 0.00 3.86
3147 5219 0.608130 TCTTGACCACGTGATCCCTG 59.392 55.000 19.30 2.12 0.00 4.45
3148 5220 1.348064 TTCTTGACCACGTGATCCCT 58.652 50.000 19.30 0.00 0.00 4.20
3149 5221 2.076863 CTTTCTTGACCACGTGATCCC 58.923 52.381 19.30 3.33 0.00 3.85
3150 5222 3.040147 TCTTTCTTGACCACGTGATCC 57.960 47.619 19.30 5.98 0.00 3.36
3151 5223 4.670221 GCATTCTTTCTTGACCACGTGATC 60.670 45.833 19.30 10.93 0.00 2.92
3152 5224 3.189287 GCATTCTTTCTTGACCACGTGAT 59.811 43.478 19.30 0.00 0.00 3.06
3153 5225 2.548057 GCATTCTTTCTTGACCACGTGA 59.452 45.455 19.30 0.00 0.00 4.35
3154 5226 2.350772 GGCATTCTTTCTTGACCACGTG 60.351 50.000 9.08 9.08 0.00 4.49
3155 5227 1.880027 GGCATTCTTTCTTGACCACGT 59.120 47.619 0.00 0.00 0.00 4.49
3156 5228 2.619013 GGCATTCTTTCTTGACCACG 57.381 50.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.