Multiple sequence alignment - TraesCS3A01G392700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G392700 chr3A 100.000 2462 0 0 1 2462 640555911 640553450 0.000000e+00 4547.0
1 TraesCS3A01G392700 chr3A 93.617 141 6 1 1357 1494 640513620 640513480 8.920000e-50 207.0
2 TraesCS3A01G392700 chr3A 89.744 78 6 2 2363 2440 78711770 78711695 5.600000e-17 99.0
3 TraesCS3A01G392700 chr3D 88.313 1523 110 33 491 1988 500840814 500842293 0.000000e+00 1764.0
4 TraesCS3A01G392700 chr3D 94.183 447 24 2 2015 2459 500842378 500842824 0.000000e+00 680.0
5 TraesCS3A01G392700 chr3D 82.105 285 26 8 732 1013 500847096 500847358 1.150000e-53 220.0
6 TraesCS3A01G392700 chr3D 95.960 99 3 1 1 99 338669783 338669880 2.530000e-35 159.0
7 TraesCS3A01G392700 chr3D 95.960 99 3 1 1 99 401048057 401048154 2.530000e-35 159.0
8 TraesCS3A01G392700 chr3D 95.918 98 3 1 1 98 592878638 592878542 9.110000e-35 158.0
9 TraesCS3A01G392700 chr3D 86.667 105 11 3 2340 2443 351245722 351245824 2.000000e-21 113.0
10 TraesCS3A01G392700 chr3B 89.623 954 78 14 1033 1967 662420048 662420999 0.000000e+00 1194.0
11 TraesCS3A01G392700 chr3B 86.723 1062 102 17 732 1776 662466363 662467402 0.000000e+00 1144.0
12 TraesCS3A01G392700 chr3B 87.149 926 81 15 732 1650 662366659 662367553 0.000000e+00 1016.0
13 TraesCS3A01G392700 chr3B 87.090 914 92 12 732 1630 661989526 661988624 0.000000e+00 1011.0
14 TraesCS3A01G392700 chr3B 84.743 603 71 15 893 1491 662445941 662446526 3.530000e-163 584.0
15 TraesCS3A01G392700 chr3B 88.265 196 11 1 831 1026 662419619 662419802 8.860000e-55 224.0
16 TraesCS3A01G392700 chr3B 82.018 228 24 9 1625 1837 661986711 661986486 7.000000e-41 178.0
17 TraesCS3A01G392700 chr3B 84.459 148 4 10 258 390 662377992 662378135 7.150000e-26 128.0
18 TraesCS3A01G392700 chr3B 89.583 96 8 2 2352 2447 111944321 111944228 1.200000e-23 121.0
19 TraesCS3A01G392700 chr3B 83.478 115 12 7 2342 2455 449834015 449834123 1.560000e-17 100.0
20 TraesCS3A01G392700 chr3B 87.179 78 10 0 2329 2406 661991434 661991357 3.370000e-14 89.8
21 TraesCS3A01G392700 chr5D 84.393 173 18 8 1835 2003 82315846 82315679 7.050000e-36 161.0
22 TraesCS3A01G392700 chr6D 95.098 102 4 1 1 102 363148025 363147925 2.530000e-35 159.0
23 TraesCS3A01G392700 chr5B 95.960 99 3 1 1 99 100032161 100032258 2.530000e-35 159.0
24 TraesCS3A01G392700 chr5B 85.417 144 15 4 1835 1975 111909853 111909713 7.100000e-31 145.0
25 TraesCS3A01G392700 chr5B 85.315 143 17 4 1835 1975 506313288 506313428 7.100000e-31 145.0
26 TraesCS3A01G392700 chr5B 81.818 165 26 4 1835 1997 657413085 657413247 4.270000e-28 135.0
27 TraesCS3A01G392700 chr5B 79.310 116 21 3 2342 2457 265286835 265286723 7.300000e-11 78.7
28 TraesCS3A01G392700 chr5A 95.098 102 4 1 1 102 639360787 639360887 2.530000e-35 159.0
29 TraesCS3A01G392700 chrUn 95.050 101 4 1 2 102 20854274 20854373 9.110000e-35 158.0
30 TraesCS3A01G392700 chrUn 94.949 99 4 1 1 99 330683858 330683955 1.180000e-33 154.0
31 TraesCS3A01G392700 chrUn 84.615 143 18 3 1835 1975 268873481 268873621 3.300000e-29 139.0
32 TraesCS3A01G392700 chr2D 95.918 98 3 1 1 98 638312328 638312232 9.110000e-35 158.0
33 TraesCS3A01G392700 chr2D 85.315 143 17 4 1835 1975 445733830 445733690 7.100000e-31 145.0
34 TraesCS3A01G392700 chr2A 86.111 144 12 7 1836 1975 710389486 710389347 5.490000e-32 148.0
35 TraesCS3A01G392700 chr7D 85.315 143 17 4 1835 1975 94439239 94439099 7.100000e-31 145.0
36 TraesCS3A01G392700 chr7A 76.754 228 21 25 102 309 261888446 261888231 5.600000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G392700 chr3A 640553450 640555911 2461 True 4547.000000 4547 100.000 1 2462 1 chr3A.!!$R3 2461
1 TraesCS3A01G392700 chr3D 500840814 500842824 2010 False 1222.000000 1764 91.248 491 2459 2 chr3D.!!$F5 1968
2 TraesCS3A01G392700 chr3B 662466363 662467402 1039 False 1144.000000 1144 86.723 732 1776 1 chr3B.!!$F5 1044
3 TraesCS3A01G392700 chr3B 662366659 662367553 894 False 1016.000000 1016 87.149 732 1650 1 chr3B.!!$F2 918
4 TraesCS3A01G392700 chr3B 662419619 662420999 1380 False 709.000000 1194 88.944 831 1967 2 chr3B.!!$F6 1136
5 TraesCS3A01G392700 chr3B 662445941 662446526 585 False 584.000000 584 84.743 893 1491 1 chr3B.!!$F4 598
6 TraesCS3A01G392700 chr3B 661986486 661991434 4948 True 426.266667 1011 85.429 732 2406 3 chr3B.!!$R2 1674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 383 0.380378 AATTGTTTCACACGTGCGCT 59.620 45.0 17.22 0.0 0.0 5.92 F
1028 2471 0.037790 GCTCTGGTCTCTGTTTCGCT 60.038 55.0 0.00 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 2684 0.660595 CGACTATGATCGTGACCGCC 60.661 60.0 0.0 0.0 37.33 6.13 R
2044 5496 1.009829 GCTCTACCCAATGAACGCAG 58.990 55.0 0.0 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.847670 GACTTGAGACTACCAAACATGAC 57.152 43.478 0.00 0.00 0.00 3.06
23 24 5.290493 ACTTGAGACTACCAAACATGACA 57.710 39.130 0.00 0.00 0.00 3.58
24 25 5.869579 ACTTGAGACTACCAAACATGACAT 58.130 37.500 0.00 0.00 0.00 3.06
25 26 5.702670 ACTTGAGACTACCAAACATGACATG 59.297 40.000 14.02 14.02 0.00 3.21
28 29 4.005650 AGACTACCAAACATGACATGCAG 58.994 43.478 15.49 5.48 0.00 4.41
29 30 3.753272 GACTACCAAACATGACATGCAGT 59.247 43.478 15.49 9.80 0.00 4.40
30 31 3.503363 ACTACCAAACATGACATGCAGTG 59.497 43.478 15.49 10.34 0.00 3.66
31 32 1.614903 ACCAAACATGACATGCAGTGG 59.385 47.619 22.15 22.15 35.82 4.00
33 34 2.036217 CCAAACATGACATGCAGTGGTT 59.964 45.455 15.49 0.00 0.00 3.67
34 35 3.255395 CCAAACATGACATGCAGTGGTTA 59.745 43.478 15.49 0.00 0.00 2.85
35 36 4.478699 CAAACATGACATGCAGTGGTTAG 58.521 43.478 15.49 0.00 0.00 2.34
36 37 3.423539 ACATGACATGCAGTGGTTAGT 57.576 42.857 15.49 0.00 0.00 2.24
38 39 4.144297 ACATGACATGCAGTGGTTAGTTT 58.856 39.130 15.49 0.00 0.00 2.66
39 40 5.312895 ACATGACATGCAGTGGTTAGTTTA 58.687 37.500 15.49 0.00 0.00 2.01
40 41 5.945784 ACATGACATGCAGTGGTTAGTTTAT 59.054 36.000 15.49 0.00 0.00 1.40
42 43 7.609918 ACATGACATGCAGTGGTTAGTTTATTA 59.390 33.333 15.49 0.00 0.00 0.98
43 44 8.623903 CATGACATGCAGTGGTTAGTTTATTAT 58.376 33.333 1.71 0.00 0.00 1.28
44 45 9.845740 ATGACATGCAGTGGTTAGTTTATTATA 57.154 29.630 0.00 0.00 0.00 0.98
47 48 8.567948 ACATGCAGTGGTTAGTTTATTATATGC 58.432 33.333 0.00 0.00 0.00 3.14
48 49 8.567104 CATGCAGTGGTTAGTTTATTATATGCA 58.433 33.333 0.00 0.00 42.27 3.96
49 50 8.512966 TGCAGTGGTTAGTTTATTATATGCAA 57.487 30.769 0.00 0.00 36.00 4.08
51 52 9.398170 GCAGTGGTTAGTTTATTATATGCAATG 57.602 33.333 0.00 0.00 0.00 2.82
53 54 9.354673 AGTGGTTAGTTTATTATATGCAATGCT 57.645 29.630 6.82 0.00 0.00 3.79
86 87 8.340230 AGCAAAAAGAACATTAAGTTTTCTCG 57.660 30.769 0.00 0.00 41.51 4.04
87 88 7.973944 AGCAAAAAGAACATTAAGTTTTCTCGT 59.026 29.630 0.00 0.00 41.51 4.18
88 89 8.592155 GCAAAAAGAACATTAAGTTTTCTCGTT 58.408 29.630 0.00 0.00 41.51 3.85
92 93 8.851960 AAGAACATTAAGTTTTCTCGTTTTCC 57.148 30.769 0.00 0.00 41.51 3.13
93 94 8.221965 AGAACATTAAGTTTTCTCGTTTTCCT 57.778 30.769 0.00 0.00 41.51 3.36
94 95 8.343366 AGAACATTAAGTTTTCTCGTTTTCCTC 58.657 33.333 0.00 0.00 41.51 3.71
95 96 7.803279 ACATTAAGTTTTCTCGTTTTCCTCT 57.197 32.000 0.00 0.00 0.00 3.69
96 97 7.862648 ACATTAAGTTTTCTCGTTTTCCTCTC 58.137 34.615 0.00 0.00 0.00 3.20
97 98 6.856135 TTAAGTTTTCTCGTTTTCCTCTCC 57.144 37.500 0.00 0.00 0.00 3.71
98 99 3.391049 AGTTTTCTCGTTTTCCTCTCCG 58.609 45.455 0.00 0.00 0.00 4.63
99 100 3.129109 GTTTTCTCGTTTTCCTCTCCGT 58.871 45.455 0.00 0.00 0.00 4.69
100 101 2.719426 TTCTCGTTTTCCTCTCCGTC 57.281 50.000 0.00 0.00 0.00 4.79
101 102 1.906990 TCTCGTTTTCCTCTCCGTCT 58.093 50.000 0.00 0.00 0.00 4.18
102 103 3.063510 TCTCGTTTTCCTCTCCGTCTA 57.936 47.619 0.00 0.00 0.00 2.59
103 104 2.746362 TCTCGTTTTCCTCTCCGTCTAC 59.254 50.000 0.00 0.00 0.00 2.59
104 105 2.486982 CTCGTTTTCCTCTCCGTCTACA 59.513 50.000 0.00 0.00 0.00 2.74
106 107 3.508793 TCGTTTTCCTCTCCGTCTACAAT 59.491 43.478 0.00 0.00 0.00 2.71
107 108 3.612860 CGTTTTCCTCTCCGTCTACAATG 59.387 47.826 0.00 0.00 0.00 2.82
108 109 4.566987 GTTTTCCTCTCCGTCTACAATGT 58.433 43.478 0.00 0.00 0.00 2.71
109 110 5.620654 CGTTTTCCTCTCCGTCTACAATGTA 60.621 44.000 0.00 0.00 0.00 2.29
110 111 5.988310 TTTCCTCTCCGTCTACAATGTAA 57.012 39.130 0.00 0.00 0.00 2.41
112 113 5.320549 TCCTCTCCGTCTACAATGTAAAC 57.679 43.478 0.00 0.00 0.00 2.01
115 116 5.929992 CCTCTCCGTCTACAATGTAAACAAA 59.070 40.000 0.00 0.00 0.00 2.83
116 117 6.425721 CCTCTCCGTCTACAATGTAAACAAAA 59.574 38.462 0.00 0.00 0.00 2.44
117 118 7.119262 CCTCTCCGTCTACAATGTAAACAAAAT 59.881 37.037 0.00 0.00 0.00 1.82
118 119 9.146984 CTCTCCGTCTACAATGTAAACAAAATA 57.853 33.333 0.00 0.00 0.00 1.40
119 120 8.928733 TCTCCGTCTACAATGTAAACAAAATAC 58.071 33.333 0.00 0.00 0.00 1.89
121 122 6.957077 CCGTCTACAATGTAAACAAAATACCG 59.043 38.462 0.00 0.00 0.00 4.02
122 123 7.360269 CCGTCTACAATGTAAACAAAATACCGT 60.360 37.037 0.00 0.00 0.00 4.83
123 124 8.646356 CGTCTACAATGTAAACAAAATACCGTA 58.354 33.333 0.00 0.00 0.00 4.02
124 125 9.962759 GTCTACAATGTAAACAAAATACCGTAG 57.037 33.333 0.00 0.00 0.00 3.51
209 210 9.786105 GTTTTCAAAAACAATGTCCATGAAAAT 57.214 25.926 23.14 0.00 45.72 1.82
381 382 1.196200 AAATTGTTTCACACGTGCGC 58.804 45.000 17.22 0.00 0.00 6.09
382 383 0.380378 AATTGTTTCACACGTGCGCT 59.620 45.000 17.22 0.00 0.00 5.92
383 384 1.222300 ATTGTTTCACACGTGCGCTA 58.778 45.000 17.22 0.00 0.00 4.26
384 385 1.007580 TTGTTTCACACGTGCGCTAA 58.992 45.000 17.22 1.71 0.00 3.09
385 386 1.007580 TGTTTCACACGTGCGCTAAA 58.992 45.000 17.22 8.20 0.00 1.85
386 387 1.397343 TGTTTCACACGTGCGCTAAAA 59.603 42.857 17.22 6.40 0.00 1.52
387 388 2.159558 TGTTTCACACGTGCGCTAAAAA 60.160 40.909 17.22 3.48 0.00 1.94
388 389 3.040099 GTTTCACACGTGCGCTAAAAAT 58.960 40.909 17.22 0.00 0.00 1.82
389 390 4.212911 GTTTCACACGTGCGCTAAAAATA 58.787 39.130 17.22 0.00 0.00 1.40
390 391 4.671880 TTCACACGTGCGCTAAAAATAT 57.328 36.364 17.22 0.00 0.00 1.28
391 392 5.781452 TTCACACGTGCGCTAAAAATATA 57.219 34.783 17.22 0.00 0.00 0.86
395 396 5.963004 CACACGTGCGCTAAAAATATACATT 59.037 36.000 17.22 0.00 0.00 2.71
396 397 5.963004 ACACGTGCGCTAAAAATATACATTG 59.037 36.000 17.22 0.00 0.00 2.82
397 398 5.963004 CACGTGCGCTAAAAATATACATTGT 59.037 36.000 9.73 0.00 0.00 2.71
399 400 7.007905 CACGTGCGCTAAAAATATACATTGTTT 59.992 33.333 9.73 0.00 0.00 2.83
400 401 8.176365 ACGTGCGCTAAAAATATACATTGTTTA 58.824 29.630 9.73 0.00 0.00 2.01
402 403 9.498307 GTGCGCTAAAAATATACATTGTTTACT 57.502 29.630 9.73 0.00 0.00 2.24
403 404 9.497030 TGCGCTAAAAATATACATTGTTTACTG 57.503 29.630 9.73 0.00 0.00 2.74
404 405 9.710979 GCGCTAAAAATATACATTGTTTACTGA 57.289 29.630 0.00 0.00 0.00 3.41
426 427 9.944376 ACTGAGAAAAAGTAGATATGTGCTAAA 57.056 29.630 0.00 0.00 0.00 1.85
431 432 9.788960 GAAAAAGTAGATATGTGCTAAAAAGGG 57.211 33.333 0.00 0.00 0.00 3.95
432 433 9.528489 AAAAAGTAGATATGTGCTAAAAAGGGA 57.472 29.630 0.00 0.00 0.00 4.20
433 434 9.528489 AAAAGTAGATATGTGCTAAAAAGGGAA 57.472 29.630 0.00 0.00 0.00 3.97
434 435 9.528489 AAAGTAGATATGTGCTAAAAAGGGAAA 57.472 29.630 0.00 0.00 0.00 3.13
435 436 9.700831 AAGTAGATATGTGCTAAAAAGGGAAAT 57.299 29.630 0.00 0.00 0.00 2.17
436 437 9.343539 AGTAGATATGTGCTAAAAAGGGAAATC 57.656 33.333 0.00 0.00 0.00 2.17
437 438 7.588497 AGATATGTGCTAAAAAGGGAAATCC 57.412 36.000 0.00 0.00 0.00 3.01
438 439 7.125391 AGATATGTGCTAAAAAGGGAAATCCA 58.875 34.615 1.22 0.00 38.24 3.41
439 440 7.619302 AGATATGTGCTAAAAAGGGAAATCCAA 59.381 33.333 1.22 0.00 38.24 3.53
441 442 6.432403 TGTGCTAAAAAGGGAAATCCAATT 57.568 33.333 1.22 0.00 38.24 2.32
442 443 7.546250 TGTGCTAAAAAGGGAAATCCAATTA 57.454 32.000 1.22 0.00 38.24 1.40
443 444 7.967908 TGTGCTAAAAAGGGAAATCCAATTAA 58.032 30.769 1.22 0.00 38.24 1.40
444 445 8.432805 TGTGCTAAAAAGGGAAATCCAATTAAA 58.567 29.630 1.22 0.00 38.24 1.52
487 488 8.084985 AGAAAATAAAAAGACCAAAGAACCCA 57.915 30.769 0.00 0.00 0.00 4.51
488 489 8.544622 AGAAAATAAAAAGACCAAAGAACCCAA 58.455 29.630 0.00 0.00 0.00 4.12
495 496 4.464947 AGACCAAAGAACCCAAGAAAGAG 58.535 43.478 0.00 0.00 0.00 2.85
525 526 8.729805 AGGAGAGCAAAGTATAATGAAGAAAG 57.270 34.615 0.00 0.00 0.00 2.62
534 535 8.494016 AAGTATAATGAAGAAAGAAGAACCGG 57.506 34.615 0.00 0.00 0.00 5.28
562 563 9.891828 AAAAATCACTGGAAAAACAAAGAAAAC 57.108 25.926 0.00 0.00 0.00 2.43
563 564 8.614469 AAATCACTGGAAAAACAAAGAAAACA 57.386 26.923 0.00 0.00 0.00 2.83
564 565 8.614469 AATCACTGGAAAAACAAAGAAAACAA 57.386 26.923 0.00 0.00 0.00 2.83
565 566 8.614469 ATCACTGGAAAAACAAAGAAAACAAA 57.386 26.923 0.00 0.00 0.00 2.83
623 629 7.825331 AAAACCCAAGGAAAAACAAAAGAAA 57.175 28.000 0.00 0.00 0.00 2.52
662 668 3.480470 CCAAAGAAAACCAGAGCAGAGA 58.520 45.455 0.00 0.00 0.00 3.10
667 673 2.849294 AAACCAGAGCAGAGAGAACC 57.151 50.000 0.00 0.00 0.00 3.62
668 674 1.722034 AACCAGAGCAGAGAGAACCA 58.278 50.000 0.00 0.00 0.00 3.67
669 675 0.972883 ACCAGAGCAGAGAGAACCAC 59.027 55.000 0.00 0.00 0.00 4.16
670 676 0.972134 CCAGAGCAGAGAGAACCACA 59.028 55.000 0.00 0.00 0.00 4.17
690 696 2.709125 TAGCGACACAAACGGCAGCT 62.709 55.000 0.00 0.00 37.27 4.24
691 697 3.022287 CGACACAAACGGCAGCTT 58.978 55.556 0.00 0.00 0.00 3.74
692 698 1.369209 CGACACAAACGGCAGCTTG 60.369 57.895 0.00 0.00 0.00 4.01
694 700 0.593128 GACACAAACGGCAGCTTGAT 59.407 50.000 6.99 0.00 0.00 2.57
705 727 3.929948 GCTTGATTCGCTCGCCCG 61.930 66.667 0.00 0.00 0.00 6.13
760 1938 1.165270 GTGCGTGATTAAAGGGCAGT 58.835 50.000 0.00 0.00 33.77 4.40
774 1952 3.751246 CAGTCCGAACGGGCCGTA 61.751 66.667 34.37 14.57 41.70 4.02
775 1953 3.446570 AGTCCGAACGGGCCGTAG 61.447 66.667 34.37 27.38 41.70 3.51
776 1954 3.752339 GTCCGAACGGGCCGTAGT 61.752 66.667 34.37 18.99 39.99 2.73
813 1991 3.671411 CTCGCGACGGGGATAGGG 61.671 72.222 3.71 0.00 34.29 3.53
847 2027 7.309177 CCTCTATATATTATCGCGAGGGATTG 58.691 42.308 16.66 3.48 34.40 2.67
945 2149 7.330208 CCTTTTCATTTTCATTGTCATCTGTCC 59.670 37.037 0.00 0.00 0.00 4.02
1011 2215 1.583556 TCCAGGACATGTACATGGCT 58.416 50.000 34.72 21.07 46.03 4.75
1027 2470 1.016653 GGCTCTGGTCTCTGTTTCGC 61.017 60.000 0.00 0.00 0.00 4.70
1028 2471 0.037790 GCTCTGGTCTCTGTTTCGCT 60.038 55.000 0.00 0.00 0.00 4.93
1031 2474 3.246619 CTCTGGTCTCTGTTTCGCTAAC 58.753 50.000 0.00 0.00 37.26 2.34
1037 2483 5.580691 TGGTCTCTGTTTCGCTAACATATTG 59.419 40.000 3.85 0.00 45.31 1.90
1068 2514 5.376854 AAGTACGCTACGAGGAGTTAAAA 57.623 39.130 0.00 0.00 0.00 1.52
1069 2515 5.573337 AGTACGCTACGAGGAGTTAAAAT 57.427 39.130 0.00 0.00 0.00 1.82
1089 2535 0.449388 CTTCATGCGCCTTCAGTTCC 59.551 55.000 4.18 0.00 0.00 3.62
1236 2684 3.114616 CTCGTCAACAGCCCTGCG 61.115 66.667 0.00 0.00 0.00 5.18
1545 2995 8.793592 AGGACTGTTTAATTTGGTTGTTAGATC 58.206 33.333 0.00 0.00 0.00 2.75
1631 4999 5.989168 CACACCTACTGTAGTGAATTGTCAA 59.011 40.000 13.42 0.00 37.43 3.18
1639 5007 3.837213 AGTGAATTGTCAATGCCTTCG 57.163 42.857 0.00 0.00 34.87 3.79
1729 5100 8.291032 TGAAAAATTGCCTGCATTTTTATTGAG 58.709 29.630 19.21 0.00 38.04 3.02
1731 5102 4.540359 TTGCCTGCATTTTTATTGAGCT 57.460 36.364 0.00 0.00 0.00 4.09
1818 5202 1.446272 GCTTGTTAGCCGCTCGAGT 60.446 57.895 15.13 0.00 41.74 4.18
1862 5246 9.169592 CCCTCCGTTTCAAAATATAAGTCTTTA 57.830 33.333 0.00 0.00 0.00 1.85
1942 5335 4.035558 TCATCTCATTTTGCTCCGTATTGC 59.964 41.667 0.00 0.00 0.00 3.56
1967 5360 7.010923 GCAGTTCATAGTGGAATCTCTACAAAG 59.989 40.741 0.00 0.00 29.47 2.77
2005 5398 7.696992 TTTAGGAACAAAGGGACAATATGAC 57.303 36.000 0.00 0.00 0.00 3.06
2006 5399 5.255397 AGGAACAAAGGGACAATATGACA 57.745 39.130 0.00 0.00 0.00 3.58
2007 5400 5.831103 AGGAACAAAGGGACAATATGACAT 58.169 37.500 0.00 0.00 0.00 3.06
2009 5402 6.725834 AGGAACAAAGGGACAATATGACATTT 59.274 34.615 0.00 0.00 0.00 2.32
2010 5403 7.893302 AGGAACAAAGGGACAATATGACATTTA 59.107 33.333 0.00 0.00 0.00 1.40
2011 5404 8.695456 GGAACAAAGGGACAATATGACATTTAT 58.305 33.333 0.00 0.00 0.00 1.40
2014 5407 9.253832 ACAAAGGGACAATATGACATTTATTCA 57.746 29.630 0.00 0.00 0.00 2.57
2017 5410 7.006509 AGGGACAATATGACATTTATTCAGGG 58.993 38.462 0.00 0.00 0.00 4.45
2019 5412 7.505585 GGGACAATATGACATTTATTCAGGGAA 59.494 37.037 0.00 0.00 0.00 3.97
2020 5413 9.082313 GGACAATATGACATTTATTCAGGGAAT 57.918 33.333 0.00 0.00 36.20 3.01
2044 5496 7.108841 TCATACTACTGTAGTCAATTGTCCC 57.891 40.000 22.79 0.00 40.14 4.46
2161 5614 9.491675 TTTATTGAACCGTCTGATACAGTAAAA 57.508 29.630 0.00 0.00 32.61 1.52
2169 5622 6.367695 CCGTCTGATACAGTAAAATTGTGTGA 59.632 38.462 0.00 0.00 32.61 3.58
2174 5627 7.529158 TGATACAGTAAAATTGTGTGATGCAG 58.471 34.615 0.00 0.00 0.00 4.41
2227 5680 0.390492 GCTGCAAGAAAAGCCCAAGT 59.610 50.000 0.00 0.00 34.07 3.16
2246 5699 5.168569 CAAGTGTTATTAGCCACTCGAGAA 58.831 41.667 21.68 2.17 40.91 2.87
2266 5719 2.839486 TGACTCATCTTTTGGCTCGT 57.161 45.000 0.00 0.00 0.00 4.18
2277 5730 0.888619 TTGGCTCGTCTCAAGATCGT 59.111 50.000 0.00 0.00 0.00 3.73
2310 5763 7.393216 AGAAATGAGCTAAGTTGATCTTGAGT 58.607 34.615 0.00 0.00 37.56 3.41
2334 5787 4.402155 TGGCTTGGCTCCATTACTAAAATG 59.598 41.667 0.00 0.00 0.00 2.32
2336 5789 4.737649 GCTTGGCTCCATTACTAAAATGGC 60.738 45.833 11.16 2.10 45.22 4.40
2417 5870 9.455847 CTAGCAAACATGGAATCTTAATTAAGC 57.544 33.333 18.68 6.92 33.40 3.09
2459 5912 7.254795 GCCTCAATATAATGTGTGGTCAGTTAC 60.255 40.741 0.00 0.00 32.21 2.50
2460 5913 7.987458 CCTCAATATAATGTGTGGTCAGTTACT 59.013 37.037 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.297547 TGTCATGTTTGGTAGTCTCAAGTC 58.702 41.667 0.00 0.00 0.00 3.01
2 3 5.391310 GCATGTCATGTTTGGTAGTCTCAAG 60.391 44.000 14.26 0.00 0.00 3.02
3 4 4.455533 GCATGTCATGTTTGGTAGTCTCAA 59.544 41.667 14.26 0.00 0.00 3.02
5 6 4.002982 TGCATGTCATGTTTGGTAGTCTC 58.997 43.478 14.26 0.00 0.00 3.36
6 7 4.005650 CTGCATGTCATGTTTGGTAGTCT 58.994 43.478 14.26 0.00 0.00 3.24
7 8 3.753272 ACTGCATGTCATGTTTGGTAGTC 59.247 43.478 14.26 0.00 0.00 2.59
8 9 3.503363 CACTGCATGTCATGTTTGGTAGT 59.497 43.478 14.26 6.85 0.00 2.73
9 10 3.119743 CCACTGCATGTCATGTTTGGTAG 60.120 47.826 14.26 6.33 0.00 3.18
12 13 1.614903 ACCACTGCATGTCATGTTTGG 59.385 47.619 19.80 19.80 34.06 3.28
13 14 3.374220 AACCACTGCATGTCATGTTTG 57.626 42.857 14.26 8.62 0.00 2.93
15 16 3.754965 ACTAACCACTGCATGTCATGTT 58.245 40.909 14.26 2.48 0.00 2.71
17 18 4.771590 AAACTAACCACTGCATGTCATG 57.228 40.909 8.56 8.56 0.00 3.07
18 19 8.752005 ATAATAAACTAACCACTGCATGTCAT 57.248 30.769 0.00 0.00 0.00 3.06
22 23 8.567104 TGCATATAATAAACTAACCACTGCATG 58.433 33.333 0.00 0.00 30.54 4.06
23 24 8.690203 TGCATATAATAAACTAACCACTGCAT 57.310 30.769 0.00 0.00 30.54 3.96
24 25 8.512966 TTGCATATAATAAACTAACCACTGCA 57.487 30.769 0.00 0.00 33.37 4.41
25 26 9.398170 CATTGCATATAATAAACTAACCACTGC 57.602 33.333 0.00 0.00 0.00 4.40
60 61 9.445786 CGAGAAAACTTAATGTTCTTTTTGCTA 57.554 29.630 0.00 0.00 38.03 3.49
61 62 7.973944 ACGAGAAAACTTAATGTTCTTTTTGCT 59.026 29.630 0.00 0.00 38.03 3.91
62 63 8.115491 ACGAGAAAACTTAATGTTCTTTTTGC 57.885 30.769 0.00 0.00 38.03 3.68
66 67 9.297586 GGAAAACGAGAAAACTTAATGTTCTTT 57.702 29.630 0.00 0.00 38.03 2.52
67 68 8.683615 AGGAAAACGAGAAAACTTAATGTTCTT 58.316 29.630 0.00 0.00 38.03 2.52
69 70 8.343366 AGAGGAAAACGAGAAAACTTAATGTTC 58.657 33.333 0.00 0.00 38.03 3.18
71 72 7.041303 GGAGAGGAAAACGAGAAAACTTAATGT 60.041 37.037 0.00 0.00 0.00 2.71
72 73 7.298854 GGAGAGGAAAACGAGAAAACTTAATG 58.701 38.462 0.00 0.00 0.00 1.90
73 74 6.147328 CGGAGAGGAAAACGAGAAAACTTAAT 59.853 38.462 0.00 0.00 0.00 1.40
74 75 5.464389 CGGAGAGGAAAACGAGAAAACTTAA 59.536 40.000 0.00 0.00 0.00 1.85
75 76 4.986659 CGGAGAGGAAAACGAGAAAACTTA 59.013 41.667 0.00 0.00 0.00 2.24
80 81 2.626743 AGACGGAGAGGAAAACGAGAAA 59.373 45.455 0.00 0.00 0.00 2.52
81 82 2.236766 AGACGGAGAGGAAAACGAGAA 58.763 47.619 0.00 0.00 0.00 2.87
82 83 1.906990 AGACGGAGAGGAAAACGAGA 58.093 50.000 0.00 0.00 0.00 4.04
83 84 2.486982 TGTAGACGGAGAGGAAAACGAG 59.513 50.000 0.00 0.00 0.00 4.18
85 86 3.293311 TTGTAGACGGAGAGGAAAACG 57.707 47.619 0.00 0.00 0.00 3.60
86 87 4.566987 ACATTGTAGACGGAGAGGAAAAC 58.433 43.478 0.00 0.00 0.00 2.43
87 88 4.884668 ACATTGTAGACGGAGAGGAAAA 57.115 40.909 0.00 0.00 0.00 2.29
88 89 5.988310 TTACATTGTAGACGGAGAGGAAA 57.012 39.130 0.00 0.00 0.00 3.13
90 91 4.768448 TGTTTACATTGTAGACGGAGAGGA 59.232 41.667 11.55 0.00 0.00 3.71
92 93 7.416154 TTTTGTTTACATTGTAGACGGAGAG 57.584 36.000 11.55 0.00 0.00 3.20
93 94 7.972832 ATTTTGTTTACATTGTAGACGGAGA 57.027 32.000 11.55 1.47 0.00 3.71
94 95 8.173130 GGTATTTTGTTTACATTGTAGACGGAG 58.827 37.037 11.55 0.00 0.00 4.63
95 96 7.148606 CGGTATTTTGTTTACATTGTAGACGGA 60.149 37.037 11.55 2.38 0.00 4.69
96 97 6.957077 CGGTATTTTGTTTACATTGTAGACGG 59.043 38.462 11.55 0.00 0.00 4.79
97 98 7.512297 ACGGTATTTTGTTTACATTGTAGACG 58.488 34.615 11.55 2.03 0.00 4.18
98 99 9.962759 CTACGGTATTTTGTTTACATTGTAGAC 57.037 33.333 9.87 9.87 30.76 2.59
99 100 9.153721 CCTACGGTATTTTGTTTACATTGTAGA 57.846 33.333 0.00 0.00 30.76 2.59
100 101 8.938906 ACCTACGGTATTTTGTTTACATTGTAG 58.061 33.333 0.00 0.00 32.11 2.74
101 102 8.845413 ACCTACGGTATTTTGTTTACATTGTA 57.155 30.769 0.00 0.00 32.11 2.41
102 103 7.748691 ACCTACGGTATTTTGTTTACATTGT 57.251 32.000 0.00 0.00 32.11 2.71
106 107 9.943163 GTTTTAACCTACGGTATTTTGTTTACA 57.057 29.630 0.00 0.00 33.12 2.41
107 108 9.943163 TGTTTTAACCTACGGTATTTTGTTTAC 57.057 29.630 0.00 0.00 33.12 2.01
110 111 9.465985 CATTGTTTTAACCTACGGTATTTTGTT 57.534 29.630 0.00 0.00 33.12 2.83
112 113 9.849166 ATCATTGTTTTAACCTACGGTATTTTG 57.151 29.630 0.00 0.00 33.12 2.44
192 193 9.953697 CATTTGAAAATTTTCATGGACATTGTT 57.046 25.926 29.13 6.96 45.65 2.83
193 194 9.122779 ACATTTGAAAATTTTCATGGACATTGT 57.877 25.926 29.13 21.88 45.65 2.71
194 195 9.953697 AACATTTGAAAATTTTCATGGACATTG 57.046 25.926 29.13 21.38 45.65 2.82
367 368 2.093972 TTTTAGCGCACGTGTGAAAC 57.906 45.000 32.03 14.70 37.35 2.78
369 370 4.671880 ATATTTTTAGCGCACGTGTGAA 57.328 36.364 32.03 17.01 0.00 3.18
370 371 4.626172 TGTATATTTTTAGCGCACGTGTGA 59.374 37.500 32.03 9.99 0.00 3.58
371 372 4.888106 TGTATATTTTTAGCGCACGTGTG 58.112 39.130 24.45 24.45 0.00 3.82
372 373 5.728351 ATGTATATTTTTAGCGCACGTGT 57.272 34.783 18.38 0.00 0.00 4.49
373 374 5.963004 ACAATGTATATTTTTAGCGCACGTG 59.037 36.000 12.28 12.28 0.00 4.49
374 375 6.114221 ACAATGTATATTTTTAGCGCACGT 57.886 33.333 11.47 0.00 0.00 4.49
376 377 9.498307 AGTAAACAATGTATATTTTTAGCGCAC 57.502 29.630 11.47 0.00 0.00 5.34
377 378 9.497030 CAGTAAACAATGTATATTTTTAGCGCA 57.503 29.630 11.47 0.00 0.00 6.09
378 379 9.710979 TCAGTAAACAATGTATATTTTTAGCGC 57.289 29.630 0.00 0.00 0.00 5.92
396 397 9.974750 GCACATATCTACTTTTTCTCAGTAAAC 57.025 33.333 0.00 0.00 0.00 2.01
397 398 9.944376 AGCACATATCTACTTTTTCTCAGTAAA 57.056 29.630 0.00 0.00 0.00 2.01
400 401 9.944376 TTTAGCACATATCTACTTTTTCTCAGT 57.056 29.630 0.00 0.00 0.00 3.41
407 408 9.528489 TTCCCTTTTTAGCACATATCTACTTTT 57.472 29.630 0.00 0.00 0.00 2.27
408 409 9.528489 TTTCCCTTTTTAGCACATATCTACTTT 57.472 29.630 0.00 0.00 0.00 2.66
409 410 9.700831 ATTTCCCTTTTTAGCACATATCTACTT 57.299 29.630 0.00 0.00 0.00 2.24
410 411 9.343539 GATTTCCCTTTTTAGCACATATCTACT 57.656 33.333 0.00 0.00 0.00 2.57
411 412 8.568794 GGATTTCCCTTTTTAGCACATATCTAC 58.431 37.037 0.00 0.00 0.00 2.59
412 413 8.278639 TGGATTTCCCTTTTTAGCACATATCTA 58.721 33.333 0.00 0.00 35.38 1.98
413 414 7.125391 TGGATTTCCCTTTTTAGCACATATCT 58.875 34.615 0.00 0.00 35.38 1.98
414 415 7.346751 TGGATTTCCCTTTTTAGCACATATC 57.653 36.000 0.00 0.00 35.38 1.63
415 416 7.732222 TTGGATTTCCCTTTTTAGCACATAT 57.268 32.000 0.00 0.00 35.38 1.78
416 417 7.732222 ATTGGATTTCCCTTTTTAGCACATA 57.268 32.000 0.00 0.00 35.38 2.29
418 419 6.432403 AATTGGATTTCCCTTTTTAGCACA 57.568 33.333 0.00 0.00 35.38 4.57
461 462 8.544622 TGGGTTCTTTGGTCTTTTTATTTTCTT 58.455 29.630 0.00 0.00 0.00 2.52
462 463 8.084985 TGGGTTCTTTGGTCTTTTTATTTTCT 57.915 30.769 0.00 0.00 0.00 2.52
463 464 8.725405 TTGGGTTCTTTGGTCTTTTTATTTTC 57.275 30.769 0.00 0.00 0.00 2.29
464 465 8.544622 TCTTGGGTTCTTTGGTCTTTTTATTTT 58.455 29.630 0.00 0.00 0.00 1.82
465 466 8.084985 TCTTGGGTTCTTTGGTCTTTTTATTT 57.915 30.769 0.00 0.00 0.00 1.40
468 469 7.397761 TCTTTCTTGGGTTCTTTGGTCTTTTTA 59.602 33.333 0.00 0.00 0.00 1.52
469 470 6.212589 TCTTTCTTGGGTTCTTTGGTCTTTTT 59.787 34.615 0.00 0.00 0.00 1.94
470 471 5.719563 TCTTTCTTGGGTTCTTTGGTCTTTT 59.280 36.000 0.00 0.00 0.00 2.27
471 472 5.269189 TCTTTCTTGGGTTCTTTGGTCTTT 58.731 37.500 0.00 0.00 0.00 2.52
472 473 4.867086 TCTTTCTTGGGTTCTTTGGTCTT 58.133 39.130 0.00 0.00 0.00 3.01
473 474 4.166144 TCTCTTTCTTGGGTTCTTTGGTCT 59.834 41.667 0.00 0.00 0.00 3.85
474 475 4.276183 GTCTCTTTCTTGGGTTCTTTGGTC 59.724 45.833 0.00 0.00 0.00 4.02
475 476 4.207955 GTCTCTTTCTTGGGTTCTTTGGT 58.792 43.478 0.00 0.00 0.00 3.67
476 477 4.207165 TGTCTCTTTCTTGGGTTCTTTGG 58.793 43.478 0.00 0.00 0.00 3.28
477 478 5.835113 TTGTCTCTTTCTTGGGTTCTTTG 57.165 39.130 0.00 0.00 0.00 2.77
478 479 5.360999 CCTTTGTCTCTTTCTTGGGTTCTTT 59.639 40.000 0.00 0.00 0.00 2.52
479 480 4.889995 CCTTTGTCTCTTTCTTGGGTTCTT 59.110 41.667 0.00 0.00 0.00 2.52
480 481 4.166144 TCCTTTGTCTCTTTCTTGGGTTCT 59.834 41.667 0.00 0.00 0.00 3.01
482 483 4.166144 TCTCCTTTGTCTCTTTCTTGGGTT 59.834 41.667 0.00 0.00 0.00 4.11
483 484 3.716872 TCTCCTTTGTCTCTTTCTTGGGT 59.283 43.478 0.00 0.00 0.00 4.51
484 485 4.322567 CTCTCCTTTGTCTCTTTCTTGGG 58.677 47.826 0.00 0.00 0.00 4.12
485 486 3.750652 GCTCTCCTTTGTCTCTTTCTTGG 59.249 47.826 0.00 0.00 0.00 3.61
487 488 4.696479 TGCTCTCCTTTGTCTCTTTCTT 57.304 40.909 0.00 0.00 0.00 2.52
488 489 4.696479 TTGCTCTCCTTTGTCTCTTTCT 57.304 40.909 0.00 0.00 0.00 2.52
495 496 7.849804 TCATTATACTTTGCTCTCCTTTGTC 57.150 36.000 0.00 0.00 0.00 3.18
662 668 2.806244 GTTTGTGTCGCTATGTGGTTCT 59.194 45.455 0.00 0.00 0.00 3.01
667 673 0.179225 GCCGTTTGTGTCGCTATGTG 60.179 55.000 0.00 0.00 0.00 3.21
668 674 0.601576 TGCCGTTTGTGTCGCTATGT 60.602 50.000 0.00 0.00 0.00 2.29
669 675 0.095245 CTGCCGTTTGTGTCGCTATG 59.905 55.000 0.00 0.00 0.00 2.23
670 676 1.635663 GCTGCCGTTTGTGTCGCTAT 61.636 55.000 0.00 0.00 0.00 2.97
690 696 1.226859 CTACGGGCGAGCGAATCAA 60.227 57.895 0.00 0.00 0.00 2.57
691 697 2.411701 CTACGGGCGAGCGAATCA 59.588 61.111 0.00 0.00 0.00 2.57
692 698 2.354773 CCTACGGGCGAGCGAATC 60.355 66.667 0.00 0.00 0.00 2.52
694 700 2.963928 TATCCCTACGGGCGAGCGAA 62.964 60.000 0.00 0.00 43.94 4.70
760 1938 3.443045 GACTACGGCCCGTTCGGA 61.443 66.667 16.82 0.00 41.54 4.55
774 1952 2.279408 GGGCCTCCTCTACGGACT 59.721 66.667 0.84 0.00 36.69 3.85
775 1953 2.279408 AGGGCCTCCTCTACGGAC 59.721 66.667 0.00 0.00 39.80 4.79
813 1991 6.200475 GCGATAATATATAGAGGGAAAACGCC 59.800 42.308 0.00 0.00 34.32 5.68
913 2116 7.162761 TGACAATGAAAATGAAAAGGCATGAT 58.837 30.769 0.00 0.00 0.00 2.45
1011 2215 2.626266 TGTTAGCGAAACAGAGACCAGA 59.374 45.455 3.85 0.00 43.22 3.86
1031 2474 9.825391 CGTAGCGTACTTTTACTAAACAATATG 57.175 33.333 0.00 0.00 0.00 1.78
1037 2483 6.314784 TCCTCGTAGCGTACTTTTACTAAAC 58.685 40.000 0.00 0.00 0.00 2.01
1068 2514 2.012673 GAACTGAAGGCGCATGAAGAT 58.987 47.619 10.83 0.00 0.00 2.40
1069 2515 1.442769 GAACTGAAGGCGCATGAAGA 58.557 50.000 10.83 0.00 0.00 2.87
1089 2535 0.948623 TGAAGACGCATGGGTTGTCG 60.949 55.000 17.36 1.48 37.69 4.35
1236 2684 0.660595 CGACTATGATCGTGACCGCC 60.661 60.000 0.00 0.00 37.33 6.13
1474 2924 9.667107 TTATAATAAGTCAAAGCAAGCACTAGT 57.333 29.630 0.00 0.00 0.00 2.57
1599 3049 1.933021 ACAGTAGGTGTGATTCCCGA 58.067 50.000 0.00 0.00 38.28 5.14
1631 4999 2.711542 CTTTCTACCCAACGAAGGCAT 58.288 47.619 0.00 0.00 0.00 4.40
1639 5007 6.584185 TTTAGGATTTGCTTTCTACCCAAC 57.416 37.500 0.00 0.00 0.00 3.77
1714 5085 8.025445 AGTCTAAACAGCTCAATAAAAATGCAG 58.975 33.333 0.00 0.00 0.00 4.41
1729 5100 2.603173 GCAGCACACAAGTCTAAACAGC 60.603 50.000 0.00 0.00 0.00 4.40
1731 5102 2.637947 TGCAGCACACAAGTCTAAACA 58.362 42.857 0.00 0.00 0.00 2.83
1902 5294 9.888878 AATGAGATGATTGCATTCTAAAATACG 57.111 29.630 9.81 0.00 34.11 3.06
1916 5308 4.627611 ACGGAGCAAAATGAGATGATTG 57.372 40.909 0.00 0.00 0.00 2.67
1919 5311 4.035558 GCAATACGGAGCAAAATGAGATGA 59.964 41.667 0.00 0.00 0.00 2.92
1920 5312 4.201940 TGCAATACGGAGCAAAATGAGATG 60.202 41.667 0.00 0.00 37.90 2.90
1921 5313 3.947196 TGCAATACGGAGCAAAATGAGAT 59.053 39.130 0.00 0.00 37.90 2.75
1922 5314 3.342719 TGCAATACGGAGCAAAATGAGA 58.657 40.909 0.00 0.00 37.90 3.27
1942 5335 8.253810 TCTTTGTAGAGATTCCACTATGAACTG 58.746 37.037 0.00 0.00 0.00 3.16
1988 5381 9.253832 TGAATAAATGTCATATTGTCCCTTTGT 57.746 29.630 0.00 0.00 0.00 2.83
1989 5382 9.740239 CTGAATAAATGTCATATTGTCCCTTTG 57.260 33.333 0.00 0.00 0.00 2.77
1992 5385 7.006509 CCCTGAATAAATGTCATATTGTCCCT 58.993 38.462 0.00 0.00 0.00 4.20
1996 5389 9.645128 TGATTCCCTGAATAAATGTCATATTGT 57.355 29.630 0.00 0.00 31.89 2.71
2002 5395 9.778741 GTAGTATGATTCCCTGAATAAATGTCA 57.221 33.333 0.00 0.00 31.89 3.58
2004 5397 9.784531 CAGTAGTATGATTCCCTGAATAAATGT 57.215 33.333 0.00 0.00 31.89 2.71
2005 5398 9.784531 ACAGTAGTATGATTCCCTGAATAAATG 57.215 33.333 0.00 0.00 31.89 2.32
2009 5402 9.298250 GACTACAGTAGTATGATTCCCTGAATA 57.702 37.037 13.51 0.00 39.59 1.75
2010 5403 7.785028 TGACTACAGTAGTATGATTCCCTGAAT 59.215 37.037 13.51 0.00 39.59 2.57
2011 5404 7.123383 TGACTACAGTAGTATGATTCCCTGAA 58.877 38.462 13.51 0.00 39.59 3.02
2012 5405 6.669631 TGACTACAGTAGTATGATTCCCTGA 58.330 40.000 13.51 0.00 39.59 3.86
2013 5406 6.961360 TGACTACAGTAGTATGATTCCCTG 57.039 41.667 13.51 0.00 39.59 4.45
2014 5407 8.424918 CAATTGACTACAGTAGTATGATTCCCT 58.575 37.037 13.51 0.00 39.59 4.20
2017 5410 9.250624 GGACAATTGACTACAGTAGTATGATTC 57.749 37.037 13.51 6.27 39.59 2.52
2019 5412 7.565398 AGGGACAATTGACTACAGTAGTATGAT 59.435 37.037 13.51 5.36 39.59 2.45
2020 5413 6.895756 AGGGACAATTGACTACAGTAGTATGA 59.104 38.462 13.51 3.23 39.59 2.15
2044 5496 1.009829 GCTCTACCCAATGAACGCAG 58.990 55.000 0.00 0.00 0.00 5.18
2125 5577 2.983136 CGGTTCAATAAAAATGCACGCA 59.017 40.909 0.00 0.00 0.00 5.24
2126 5578 2.983803 ACGGTTCAATAAAAATGCACGC 59.016 40.909 0.00 0.00 0.00 5.34
2127 5579 4.320690 CAGACGGTTCAATAAAAATGCACG 59.679 41.667 0.00 0.00 0.00 5.34
2169 5622 5.104360 AGGTTACTGGATTGTGATACTGCAT 60.104 40.000 0.00 0.00 0.00 3.96
2174 5627 3.802685 GCGAGGTTACTGGATTGTGATAC 59.197 47.826 0.00 0.00 0.00 2.24
2184 5637 2.961526 ATAGTGTGCGAGGTTACTGG 57.038 50.000 0.00 0.00 0.00 4.00
2227 5680 5.127194 AGTCATTCTCGAGTGGCTAATAACA 59.873 40.000 13.13 0.00 30.97 2.41
2246 5699 3.055530 AGACGAGCCAAAAGATGAGTCAT 60.056 43.478 4.98 4.98 0.00 3.06
2266 5719 7.603784 TCATTTCTTTTCATGACGATCTTGAGA 59.396 33.333 0.00 0.00 33.06 3.27
2277 5730 8.394971 TCAACTTAGCTCATTTCTTTTCATGA 57.605 30.769 0.00 0.00 0.00 3.07
2310 5763 3.730215 TTAGTAATGGAGCCAAGCCAA 57.270 42.857 0.00 0.00 39.21 4.52
2417 5870 5.403897 TTGAGGCTTAAATTATCTTCGCG 57.596 39.130 0.00 0.00 0.00 5.87
2432 5885 5.104360 ACTGACCACACATTATATTGAGGCT 60.104 40.000 1.71 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.