Multiple sequence alignment - TraesCS3A01G390700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G390700 chr3A 100.000 3863 0 0 1 3863 638925621 638929483 0.000000e+00 7134.0
1 TraesCS3A01G390700 chr3D 95.424 2251 75 10 802 3031 498860409 498862652 0.000000e+00 3561.0
2 TraesCS3A01G390700 chr3D 85.841 339 37 11 3 336 149751634 149751966 2.210000e-92 350.0
3 TraesCS3A01G390700 chr3D 91.542 201 16 1 3030 3230 400998269 400998070 3.800000e-70 276.0
4 TraesCS3A01G390700 chr3B 94.749 2133 93 9 890 3011 659542664 659544788 0.000000e+00 3301.0
5 TraesCS3A01G390700 chr3B 91.414 198 17 0 3030 3227 729169380 729169577 4.920000e-69 272.0
6 TraesCS3A01G390700 chr5D 94.994 839 35 4 3030 3861 370109768 370110606 0.000000e+00 1310.0
7 TraesCS3A01G390700 chr5D 91.639 299 18 1 3031 3322 371805162 371804864 1.290000e-109 407.0
8 TraesCS3A01G390700 chr5D 90.547 201 18 1 3031 3230 311616879 311616679 8.230000e-67 265.0
9 TraesCS3A01G390700 chr7B 94.279 839 41 3 3030 3861 711499061 711498223 0.000000e+00 1277.0
10 TraesCS3A01G390700 chr7B 93.445 839 47 5 3030 3861 39542975 39542138 0.000000e+00 1238.0
11 TraesCS3A01G390700 chr7B 100.000 29 0 0 394 422 79104983 79104955 2.000000e-03 54.7
12 TraesCS3A01G390700 chr5B 93.112 842 50 5 3027 3861 332363186 332362346 0.000000e+00 1227.0
13 TraesCS3A01G390700 chr5B 86.731 309 41 0 3331 3639 37733570 37733262 1.030000e-90 344.0
14 TraesCS3A01G390700 chr5B 83.951 81 10 3 395 472 408459033 408459113 1.490000e-09 75.0
15 TraesCS3A01G390700 chr4A 94.925 335 15 2 3 336 539982418 539982751 1.230000e-144 523.0
16 TraesCS3A01G390700 chr4A 94.083 338 20 0 3 340 539987709 539988046 7.400000e-142 514.0
17 TraesCS3A01G390700 chr5A 94.611 334 18 0 3 336 120780167 120780500 5.720000e-143 518.0
18 TraesCS3A01G390700 chr5A 93.413 334 21 1 3 336 120764832 120765164 9.640000e-136 494.0
19 TraesCS3A01G390700 chr5A 85.546 339 39 9 3 336 279115461 279115128 2.860000e-91 346.0
20 TraesCS3A01G390700 chr7A 92.226 283 22 0 3 285 615043594 615043876 6.010000e-108 401.0
21 TraesCS3A01G390700 chr7A 91.000 300 19 5 3031 3322 84024814 84024515 7.780000e-107 398.0
22 TraesCS3A01G390700 chr7A 95.146 103 5 0 3228 3330 689897178 689897076 3.090000e-36 163.0
23 TraesCS3A01G390700 chr1D 89.902 307 24 4 3031 3330 25232605 25232299 4.680000e-104 388.0
24 TraesCS3A01G390700 chr6D 87.537 337 31 10 3 336 465970351 465970679 2.820000e-101 379.0
25 TraesCS3A01G390700 chr6D 86.647 337 34 10 3 336 465973854 465973526 2.840000e-96 363.0
26 TraesCS3A01G390700 chr6D 93.532 201 13 0 3031 3231 436886331 436886131 2.260000e-77 300.0
27 TraesCS3A01G390700 chr2A 88.026 309 37 0 3331 3639 535236374 535236066 2.190000e-97 366.0
28 TraesCS3A01G390700 chrUn 87.075 294 18 9 3346 3639 91512659 91512386 8.060000e-82 315.0
29 TraesCS3A01G390700 chrUn 98.990 99 1 0 3228 3326 29286426 29286328 1.100000e-40 178.0
30 TraesCS3A01G390700 chr6B 91.500 200 17 0 3031 3230 656181299 656181100 3.800000e-70 276.0
31 TraesCS3A01G390700 chr1A 85.769 260 24 7 3331 3589 124314713 124314960 2.960000e-66 263.0
32 TraesCS3A01G390700 chr2B 92.308 52 4 0 3341 3392 751842991 751842940 1.490000e-09 75.0
33 TraesCS3A01G390700 chr6A 96.970 33 1 0 440 472 466664364 466664396 5.390000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G390700 chr3A 638925621 638929483 3862 False 7134 7134 100.000 1 3863 1 chr3A.!!$F1 3862
1 TraesCS3A01G390700 chr3D 498860409 498862652 2243 False 3561 3561 95.424 802 3031 1 chr3D.!!$F2 2229
2 TraesCS3A01G390700 chr3B 659542664 659544788 2124 False 3301 3301 94.749 890 3011 1 chr3B.!!$F1 2121
3 TraesCS3A01G390700 chr5D 370109768 370110606 838 False 1310 1310 94.994 3030 3861 1 chr5D.!!$F1 831
4 TraesCS3A01G390700 chr7B 711498223 711499061 838 True 1277 1277 94.279 3030 3861 1 chr7B.!!$R3 831
5 TraesCS3A01G390700 chr7B 39542138 39542975 837 True 1238 1238 93.445 3030 3861 1 chr7B.!!$R1 831
6 TraesCS3A01G390700 chr5B 332362346 332363186 840 True 1227 1227 93.112 3027 3861 1 chr5B.!!$R2 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.032515 TCTATTGTCCGGCTCCCTGA 60.033 55.0 0.00 0.00 0.00 3.86 F
332 333 0.032813 CGGTAGGACCCTGGGTTCTA 60.033 60.0 27.09 27.09 40.28 2.10 F
336 337 0.421904 AGGACCCTGGGTTCTACCAT 59.578 55.0 25.80 3.62 40.28 3.55 F
768 769 0.557729 AACCCCTCTATGCCAATGGG 59.442 55.0 0.00 0.00 39.02 4.00 F
2139 2155 0.459237 CACACGAGCTCATCAGGTCC 60.459 60.0 15.40 0.00 43.26 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1594 0.311790 TGTCGTCGTACACCCTGAAC 59.688 55.000 0.0 0.0 0.0 3.18 R
2105 2121 0.517316 GTGTGACAGATTGTTCGGCC 59.483 55.000 0.0 0.0 0.0 6.13 R
2139 2155 1.466167 CTGAGCAGGACGTTGAAATGG 59.534 52.381 0.0 0.0 0.0 3.16 R
2637 2653 1.079750 GACCTCACTCGGCTCAACC 60.080 63.158 0.0 0.0 0.0 3.77 R
3526 3558 1.115467 GTCTCCCACATCTGACCGAT 58.885 55.000 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.472695 TGTGTTATGACTGGGCAGAC 57.527 50.000 0.00 0.00 0.00 3.51
20 21 1.977854 TGTGTTATGACTGGGCAGACT 59.022 47.619 0.00 0.00 0.00 3.24
21 22 2.371841 TGTGTTATGACTGGGCAGACTT 59.628 45.455 0.00 0.00 0.00 3.01
22 23 3.580895 TGTGTTATGACTGGGCAGACTTA 59.419 43.478 0.00 0.00 0.00 2.24
23 24 4.225042 TGTGTTATGACTGGGCAGACTTAT 59.775 41.667 0.00 0.00 0.00 1.73
24 25 4.572389 GTGTTATGACTGGGCAGACTTATG 59.428 45.833 0.00 0.00 0.00 1.90
25 26 4.130118 GTTATGACTGGGCAGACTTATGG 58.870 47.826 0.00 0.00 0.00 2.74
26 27 0.253044 TGACTGGGCAGACTTATGGC 59.747 55.000 0.00 0.00 44.61 4.40
31 32 3.290776 GGCAGACTTATGGCCGTAG 57.709 57.895 4.52 0.72 39.73 3.51
44 45 3.470888 CGTAGGAGGCCCACCAGG 61.471 72.222 17.23 6.78 39.06 4.45
55 56 2.514458 CCCACCAGGCAAGTTTAGAT 57.486 50.000 0.00 0.00 0.00 1.98
56 57 2.807676 CCCACCAGGCAAGTTTAGATT 58.192 47.619 0.00 0.00 0.00 2.40
57 58 3.963129 CCCACCAGGCAAGTTTAGATTA 58.037 45.455 0.00 0.00 0.00 1.75
58 59 3.947834 CCCACCAGGCAAGTTTAGATTAG 59.052 47.826 0.00 0.00 0.00 1.73
59 60 3.947834 CCACCAGGCAAGTTTAGATTAGG 59.052 47.826 0.00 0.00 0.00 2.69
60 61 3.947834 CACCAGGCAAGTTTAGATTAGGG 59.052 47.826 0.00 0.00 0.00 3.53
61 62 3.053619 ACCAGGCAAGTTTAGATTAGGGG 60.054 47.826 0.00 0.00 0.00 4.79
62 63 2.952310 CAGGCAAGTTTAGATTAGGGGC 59.048 50.000 0.00 0.00 0.00 5.80
63 64 2.853077 AGGCAAGTTTAGATTAGGGGCT 59.147 45.455 0.00 0.00 0.00 5.19
64 65 3.269643 AGGCAAGTTTAGATTAGGGGCTT 59.730 43.478 0.00 0.00 0.00 4.35
65 66 3.381590 GGCAAGTTTAGATTAGGGGCTTG 59.618 47.826 0.00 0.00 36.08 4.01
66 67 3.381590 GCAAGTTTAGATTAGGGGCTTGG 59.618 47.826 0.00 0.00 34.28 3.61
67 68 3.298686 AGTTTAGATTAGGGGCTTGGC 57.701 47.619 0.00 0.00 0.00 4.52
77 78 4.329831 GGCTTGGCCCACGAATTA 57.670 55.556 0.00 0.00 44.06 1.40
78 79 2.807247 GGCTTGGCCCACGAATTAT 58.193 52.632 0.00 0.00 44.06 1.28
79 80 0.668535 GGCTTGGCCCACGAATTATC 59.331 55.000 0.00 0.00 44.06 1.75
80 81 1.680338 GCTTGGCCCACGAATTATCT 58.320 50.000 0.00 0.00 0.00 1.98
81 82 2.024414 GCTTGGCCCACGAATTATCTT 58.976 47.619 0.00 0.00 0.00 2.40
82 83 3.211045 GCTTGGCCCACGAATTATCTTA 58.789 45.455 0.00 0.00 0.00 2.10
83 84 3.821033 GCTTGGCCCACGAATTATCTTAT 59.179 43.478 0.00 0.00 0.00 1.73
84 85 4.278419 GCTTGGCCCACGAATTATCTTATT 59.722 41.667 0.00 0.00 0.00 1.40
85 86 5.221244 GCTTGGCCCACGAATTATCTTATTT 60.221 40.000 0.00 0.00 0.00 1.40
86 87 6.682861 GCTTGGCCCACGAATTATCTTATTTT 60.683 38.462 0.00 0.00 0.00 1.82
87 88 6.385649 TGGCCCACGAATTATCTTATTTTC 57.614 37.500 0.00 0.00 0.00 2.29
88 89 5.888724 TGGCCCACGAATTATCTTATTTTCA 59.111 36.000 0.00 0.00 0.00 2.69
89 90 6.039270 TGGCCCACGAATTATCTTATTTTCAG 59.961 38.462 0.00 0.00 0.00 3.02
90 91 5.915196 GCCCACGAATTATCTTATTTTCAGC 59.085 40.000 0.00 0.00 0.00 4.26
91 92 6.459573 GCCCACGAATTATCTTATTTTCAGCA 60.460 38.462 0.00 0.00 0.00 4.41
92 93 7.651808 CCCACGAATTATCTTATTTTCAGCAT 58.348 34.615 0.00 0.00 0.00 3.79
93 94 8.137437 CCCACGAATTATCTTATTTTCAGCATT 58.863 33.333 0.00 0.00 0.00 3.56
94 95 8.961092 CCACGAATTATCTTATTTTCAGCATTG 58.039 33.333 0.00 0.00 0.00 2.82
95 96 9.507280 CACGAATTATCTTATTTTCAGCATTGT 57.493 29.630 0.00 0.00 0.00 2.71
96 97 9.507280 ACGAATTATCTTATTTTCAGCATTGTG 57.493 29.630 0.00 0.00 0.00 3.33
97 98 8.961092 CGAATTATCTTATTTTCAGCATTGTGG 58.039 33.333 0.00 0.00 0.00 4.17
98 99 9.807649 GAATTATCTTATTTTCAGCATTGTGGT 57.192 29.630 0.00 0.00 0.00 4.16
111 112 9.653287 TTCAGCATTGTGGTTATATATACTAGC 57.347 33.333 0.00 0.00 0.00 3.42
112 113 9.035890 TCAGCATTGTGGTTATATATACTAGCT 57.964 33.333 0.00 0.00 0.00 3.32
113 114 9.091784 CAGCATTGTGGTTATATATACTAGCTG 57.908 37.037 0.00 0.00 36.67 4.24
114 115 8.816894 AGCATTGTGGTTATATATACTAGCTGT 58.183 33.333 0.00 0.00 0.00 4.40
159 160 8.539770 AGCAATAAGACATATTCTATTGTCCG 57.460 34.615 0.00 0.00 42.56 4.79
160 161 7.604164 AGCAATAAGACATATTCTATTGTCCGG 59.396 37.037 0.00 0.00 42.56 5.14
161 162 7.624344 GCAATAAGACATATTCTATTGTCCGGC 60.624 40.741 0.00 0.00 42.56 6.13
162 163 5.552870 AAGACATATTCTATTGTCCGGCT 57.447 39.130 0.00 0.00 42.56 5.52
163 164 5.140747 AGACATATTCTATTGTCCGGCTC 57.859 43.478 0.00 0.00 42.56 4.70
164 165 4.021016 AGACATATTCTATTGTCCGGCTCC 60.021 45.833 0.00 0.00 42.56 4.70
165 166 3.008049 ACATATTCTATTGTCCGGCTCCC 59.992 47.826 0.00 0.00 0.00 4.30
166 167 1.807814 ATTCTATTGTCCGGCTCCCT 58.192 50.000 0.00 0.00 0.00 4.20
167 168 0.830648 TTCTATTGTCCGGCTCCCTG 59.169 55.000 0.00 0.00 0.00 4.45
168 169 0.032515 TCTATTGTCCGGCTCCCTGA 60.033 55.000 0.00 0.00 0.00 3.86
169 170 0.830648 CTATTGTCCGGCTCCCTGAA 59.169 55.000 0.00 0.00 0.00 3.02
170 171 0.830648 TATTGTCCGGCTCCCTGAAG 59.169 55.000 0.00 0.00 0.00 3.02
171 172 1.915078 ATTGTCCGGCTCCCTGAAGG 61.915 60.000 0.00 0.00 0.00 3.46
172 173 2.683933 GTCCGGCTCCCTGAAGGA 60.684 66.667 0.00 0.00 44.91 3.36
179 180 2.121832 TCCCTGAAGGAGCCGGAA 59.878 61.111 5.05 0.00 40.93 4.30
180 181 2.269241 CCCTGAAGGAGCCGGAAC 59.731 66.667 5.05 0.00 38.24 3.62
181 182 2.269241 CCTGAAGGAGCCGGAACC 59.731 66.667 5.05 7.56 37.39 3.62
182 183 2.269241 CTGAAGGAGCCGGAACCC 59.731 66.667 5.05 1.57 0.00 4.11
183 184 2.203938 TGAAGGAGCCGGAACCCT 60.204 61.111 5.05 4.47 0.00 4.34
184 185 0.976073 CTGAAGGAGCCGGAACCCTA 60.976 60.000 5.05 0.00 0.00 3.53
185 186 0.545787 TGAAGGAGCCGGAACCCTAA 60.546 55.000 5.05 0.00 0.00 2.69
186 187 0.107800 GAAGGAGCCGGAACCCTAAC 60.108 60.000 5.05 2.38 0.00 2.34
187 188 1.559965 AAGGAGCCGGAACCCTAACC 61.560 60.000 5.05 0.00 0.00 2.85
188 189 2.588439 GAGCCGGAACCCTAACCC 59.412 66.667 5.05 0.00 0.00 4.11
189 190 1.993948 GAGCCGGAACCCTAACCCT 60.994 63.158 5.05 0.00 0.00 4.34
190 191 0.688749 GAGCCGGAACCCTAACCCTA 60.689 60.000 5.05 0.00 0.00 3.53
191 192 0.690077 AGCCGGAACCCTAACCCTAG 60.690 60.000 5.05 0.00 0.00 3.02
192 193 1.828081 CCGGAACCCTAACCCTAGC 59.172 63.158 0.00 0.00 0.00 3.42
193 194 1.693152 CCGGAACCCTAACCCTAGCC 61.693 65.000 0.00 0.00 0.00 3.93
194 195 1.828081 GGAACCCTAACCCTAGCCG 59.172 63.158 0.00 0.00 0.00 5.52
195 196 1.145598 GAACCCTAACCCTAGCCGC 59.854 63.158 0.00 0.00 0.00 6.53
196 197 1.614226 AACCCTAACCCTAGCCGCA 60.614 57.895 0.00 0.00 0.00 5.69
197 198 1.907222 AACCCTAACCCTAGCCGCAC 61.907 60.000 0.00 0.00 0.00 5.34
198 199 2.504519 CCTAACCCTAGCCGCACC 59.495 66.667 0.00 0.00 0.00 5.01
199 200 2.363975 CCTAACCCTAGCCGCACCA 61.364 63.158 0.00 0.00 0.00 4.17
200 201 1.153429 CTAACCCTAGCCGCACCAC 60.153 63.158 0.00 0.00 0.00 4.16
201 202 2.588856 CTAACCCTAGCCGCACCACC 62.589 65.000 0.00 0.00 0.00 4.61
203 204 4.162690 CCCTAGCCGCACCACCTC 62.163 72.222 0.00 0.00 0.00 3.85
204 205 4.162690 CCTAGCCGCACCACCTCC 62.163 72.222 0.00 0.00 0.00 4.30
205 206 4.162690 CTAGCCGCACCACCTCCC 62.163 72.222 0.00 0.00 0.00 4.30
206 207 4.715130 TAGCCGCACCACCTCCCT 62.715 66.667 0.00 0.00 0.00 4.20
209 210 3.775654 CCGCACCACCTCCCTCTC 61.776 72.222 0.00 0.00 0.00 3.20
210 211 4.135153 CGCACCACCTCCCTCTCG 62.135 72.222 0.00 0.00 0.00 4.04
211 212 4.459089 GCACCACCTCCCTCTCGC 62.459 72.222 0.00 0.00 0.00 5.03
212 213 3.775654 CACCACCTCCCTCTCGCC 61.776 72.222 0.00 0.00 0.00 5.54
230 231 4.816984 GCCGTCTCCCTCTCCCGA 62.817 72.222 0.00 0.00 0.00 5.14
231 232 2.196229 CCGTCTCCCTCTCCCGAT 59.804 66.667 0.00 0.00 0.00 4.18
232 233 1.899534 CCGTCTCCCTCTCCCGATC 60.900 68.421 0.00 0.00 0.00 3.69
233 234 1.152943 CGTCTCCCTCTCCCGATCA 60.153 63.158 0.00 0.00 0.00 2.92
234 235 1.169661 CGTCTCCCTCTCCCGATCAG 61.170 65.000 0.00 0.00 0.00 2.90
235 236 0.825840 GTCTCCCTCTCCCGATCAGG 60.826 65.000 0.00 0.00 40.63 3.86
236 237 0.994050 TCTCCCTCTCCCGATCAGGA 60.994 60.000 0.00 0.00 45.00 3.86
237 238 0.825840 CTCCCTCTCCCGATCAGGAC 60.826 65.000 0.00 0.00 45.00 3.85
238 239 1.075970 CCCTCTCCCGATCAGGACA 60.076 63.158 0.00 0.00 45.00 4.02
239 240 1.112315 CCCTCTCCCGATCAGGACAG 61.112 65.000 0.00 0.00 45.00 3.51
240 241 1.739049 CTCTCCCGATCAGGACAGC 59.261 63.158 0.00 0.00 45.00 4.40
241 242 2.069465 CTCTCCCGATCAGGACAGCG 62.069 65.000 0.00 0.00 45.00 5.18
242 243 3.781770 CTCCCGATCAGGACAGCGC 62.782 68.421 0.00 0.00 45.00 5.92
243 244 4.899239 CCCGATCAGGACAGCGCC 62.899 72.222 2.29 0.00 45.00 6.53
244 245 4.899239 CCGATCAGGACAGCGCCC 62.899 72.222 2.29 0.00 45.00 6.13
245 246 4.147449 CGATCAGGACAGCGCCCA 62.147 66.667 2.29 0.00 0.00 5.36
246 247 2.512515 GATCAGGACAGCGCCCAC 60.513 66.667 2.29 0.00 0.00 4.61
247 248 4.457496 ATCAGGACAGCGCCCACG 62.457 66.667 2.29 0.00 44.07 4.94
274 275 4.514577 CGTCGCCCTCGCCTTCAT 62.515 66.667 0.00 0.00 35.26 2.57
275 276 2.586357 GTCGCCCTCGCCTTCATC 60.586 66.667 0.00 0.00 35.26 2.92
276 277 2.759973 TCGCCCTCGCCTTCATCT 60.760 61.111 0.00 0.00 35.26 2.90
277 278 2.187946 CGCCCTCGCCTTCATCTT 59.812 61.111 0.00 0.00 0.00 2.40
278 279 1.884926 CGCCCTCGCCTTCATCTTC 60.885 63.158 0.00 0.00 0.00 2.87
279 280 1.524849 GCCCTCGCCTTCATCTTCC 60.525 63.158 0.00 0.00 0.00 3.46
280 281 1.147153 CCCTCGCCTTCATCTTCCC 59.853 63.158 0.00 0.00 0.00 3.97
281 282 1.147153 CCTCGCCTTCATCTTCCCC 59.853 63.158 0.00 0.00 0.00 4.81
282 283 1.147153 CTCGCCTTCATCTTCCCCC 59.853 63.158 0.00 0.00 0.00 5.40
283 284 1.306997 TCGCCTTCATCTTCCCCCT 60.307 57.895 0.00 0.00 0.00 4.79
284 285 1.153086 CGCCTTCATCTTCCCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
285 286 1.454663 GCCTTCATCTTCCCCCTGC 60.455 63.158 0.00 0.00 0.00 4.85
286 287 1.228510 CCTTCATCTTCCCCCTGCC 59.771 63.158 0.00 0.00 0.00 4.85
287 288 1.284841 CCTTCATCTTCCCCCTGCCT 61.285 60.000 0.00 0.00 0.00 4.75
288 289 0.106819 CTTCATCTTCCCCCTGCCTG 60.107 60.000 0.00 0.00 0.00 4.85
289 290 2.123982 CATCTTCCCCCTGCCTGC 60.124 66.667 0.00 0.00 0.00 4.85
290 291 3.424105 ATCTTCCCCCTGCCTGCC 61.424 66.667 0.00 0.00 0.00 4.85
297 298 3.338250 CCCTGCCTGCCCCTACAA 61.338 66.667 0.00 0.00 0.00 2.41
298 299 2.044946 CCTGCCTGCCCCTACAAC 60.045 66.667 0.00 0.00 0.00 3.32
299 300 2.044946 CTGCCTGCCCCTACAACC 60.045 66.667 0.00 0.00 0.00 3.77
300 301 2.531685 TGCCTGCCCCTACAACCT 60.532 61.111 0.00 0.00 0.00 3.50
301 302 1.229690 TGCCTGCCCCTACAACCTA 60.230 57.895 0.00 0.00 0.00 3.08
302 303 0.842905 TGCCTGCCCCTACAACCTAA 60.843 55.000 0.00 0.00 0.00 2.69
303 304 0.107165 GCCTGCCCCTACAACCTAAG 60.107 60.000 0.00 0.00 0.00 2.18
304 305 0.546598 CCTGCCCCTACAACCTAAGG 59.453 60.000 0.00 0.00 0.00 2.69
305 306 1.580059 CTGCCCCTACAACCTAAGGA 58.420 55.000 0.00 0.00 34.58 3.36
306 307 1.486726 CTGCCCCTACAACCTAAGGAG 59.513 57.143 0.00 0.00 34.58 3.69
307 308 0.180642 GCCCCTACAACCTAAGGAGC 59.819 60.000 0.00 0.00 34.58 4.70
308 309 1.580059 CCCCTACAACCTAAGGAGCA 58.420 55.000 0.00 0.00 34.58 4.26
309 310 1.486726 CCCCTACAACCTAAGGAGCAG 59.513 57.143 0.00 0.00 34.58 4.24
310 311 1.486726 CCCTACAACCTAAGGAGCAGG 59.513 57.143 0.00 0.00 39.25 4.85
312 313 2.168728 CCTACAACCTAAGGAGCAGGTC 59.831 54.545 0.00 0.00 45.90 3.85
313 314 0.984995 ACAACCTAAGGAGCAGGTCC 59.015 55.000 11.04 11.04 45.90 4.46
320 321 2.043248 GGAGCAGGTCCGGTAGGA 60.043 66.667 1.99 0.00 46.11 2.94
328 329 3.278519 TCCGGTAGGACCCTGGGT 61.279 66.667 20.72 20.72 42.75 4.51
329 330 2.285144 CCGGTAGGACCCTGGGTT 60.285 66.667 21.59 7.66 41.02 4.11
330 331 2.364780 CCGGTAGGACCCTGGGTTC 61.365 68.421 21.59 19.28 41.02 3.62
331 332 1.305887 CGGTAGGACCCTGGGTTCT 60.306 63.158 29.30 29.30 44.90 3.01
332 333 0.032813 CGGTAGGACCCTGGGTTCTA 60.033 60.000 27.09 27.09 40.28 2.10
334 335 4.912897 AGGACCCTGGGTTCTACC 57.087 61.111 25.80 18.44 40.28 3.18
335 336 1.095130 TAGGACCCTGGGTTCTACCA 58.905 55.000 27.09 10.31 40.28 3.25
336 337 0.421904 AGGACCCTGGGTTCTACCAT 59.578 55.000 25.80 3.62 40.28 3.55
337 338 0.837940 GGACCCTGGGTTCTACCATC 59.162 60.000 21.59 3.96 41.02 3.51
338 339 1.580059 GACCCTGGGTTCTACCATCA 58.420 55.000 21.59 0.00 41.02 3.07
339 340 2.127708 GACCCTGGGTTCTACCATCAT 58.872 52.381 21.59 0.00 41.02 2.45
340 341 1.846439 ACCCTGGGTTCTACCATCATG 59.154 52.381 14.05 0.00 41.02 3.07
341 342 2.126882 CCCTGGGTTCTACCATCATGA 58.873 52.381 3.97 0.00 41.02 3.07
342 343 2.158755 CCCTGGGTTCTACCATCATGAC 60.159 54.545 3.97 0.00 41.02 3.06
343 344 2.505407 CCTGGGTTCTACCATCATGACA 59.495 50.000 0.00 0.00 41.02 3.58
344 345 3.054434 CCTGGGTTCTACCATCATGACAA 60.054 47.826 0.00 0.00 41.02 3.18
345 346 4.385643 CCTGGGTTCTACCATCATGACAAT 60.386 45.833 0.00 0.00 41.02 2.71
346 347 5.191727 TGGGTTCTACCATCATGACAATT 57.808 39.130 0.00 0.00 41.02 2.32
347 348 6.320434 TGGGTTCTACCATCATGACAATTA 57.680 37.500 0.00 0.00 41.02 1.40
348 349 6.726379 TGGGTTCTACCATCATGACAATTAA 58.274 36.000 0.00 0.00 41.02 1.40
349 350 7.178573 TGGGTTCTACCATCATGACAATTAAA 58.821 34.615 0.00 0.00 41.02 1.52
350 351 7.838696 TGGGTTCTACCATCATGACAATTAAAT 59.161 33.333 0.00 0.00 41.02 1.40
351 352 9.349713 GGGTTCTACCATCATGACAATTAAATA 57.650 33.333 0.00 0.00 41.02 1.40
365 366 9.650539 TGACAATTAAATAAAATGTCCATGTGG 57.349 29.630 14.61 0.00 36.28 4.17
366 367 9.651913 GACAATTAAATAAAATGTCCATGTGGT 57.348 29.630 0.00 0.00 33.56 4.16
372 373 8.970859 AAATAAAATGTCCATGTGGTTCAAAA 57.029 26.923 0.00 0.00 36.34 2.44
373 374 8.970859 AATAAAATGTCCATGTGGTTCAAAAA 57.029 26.923 0.00 0.00 36.34 1.94
374 375 6.676237 AAAATGTCCATGTGGTTCAAAAAC 57.324 33.333 0.00 0.00 36.34 2.43
375 376 5.350504 AATGTCCATGTGGTTCAAAAACA 57.649 34.783 0.00 0.00 37.10 2.83
376 377 5.549742 ATGTCCATGTGGTTCAAAAACAT 57.450 34.783 0.00 0.00 37.10 2.71
377 378 6.662865 ATGTCCATGTGGTTCAAAAACATA 57.337 33.333 0.00 0.00 37.10 2.29
378 379 6.662865 TGTCCATGTGGTTCAAAAACATAT 57.337 33.333 0.00 0.00 37.10 1.78
379 380 6.686630 TGTCCATGTGGTTCAAAAACATATC 58.313 36.000 0.00 0.00 37.10 1.63
380 381 6.099341 GTCCATGTGGTTCAAAAACATATCC 58.901 40.000 0.00 0.00 37.10 2.59
381 382 5.101628 CCATGTGGTTCAAAAACATATCCG 58.898 41.667 0.00 0.00 37.10 4.18
382 383 5.336372 CCATGTGGTTCAAAAACATATCCGT 60.336 40.000 0.00 0.00 37.10 4.69
383 384 5.114785 TGTGGTTCAAAAACATATCCGTG 57.885 39.130 0.00 0.00 37.10 4.94
384 385 4.022762 TGTGGTTCAAAAACATATCCGTGG 60.023 41.667 0.00 0.00 37.10 4.94
385 386 3.057174 TGGTTCAAAAACATATCCGTGGC 60.057 43.478 0.00 0.00 37.10 5.01
386 387 3.192633 GGTTCAAAAACATATCCGTGGCT 59.807 43.478 0.00 0.00 37.10 4.75
387 388 4.321675 GGTTCAAAAACATATCCGTGGCTT 60.322 41.667 0.00 0.00 37.10 4.35
388 389 5.227152 GTTCAAAAACATATCCGTGGCTTT 58.773 37.500 0.00 0.00 35.36 3.51
389 390 5.461032 TCAAAAACATATCCGTGGCTTTT 57.539 34.783 0.00 0.00 0.00 2.27
390 391 5.848406 TCAAAAACATATCCGTGGCTTTTT 58.152 33.333 0.00 0.00 0.00 1.94
391 392 6.982852 TCAAAAACATATCCGTGGCTTTTTA 58.017 32.000 0.00 0.00 0.00 1.52
392 393 6.864165 TCAAAAACATATCCGTGGCTTTTTAC 59.136 34.615 0.00 0.00 0.00 2.01
393 394 4.976224 AACATATCCGTGGCTTTTTACC 57.024 40.909 0.00 0.00 0.00 2.85
394 395 3.958018 ACATATCCGTGGCTTTTTACCA 58.042 40.909 0.00 0.00 33.84 3.25
395 396 4.337145 ACATATCCGTGGCTTTTTACCAA 58.663 39.130 0.00 0.00 39.39 3.67
396 397 4.767928 ACATATCCGTGGCTTTTTACCAAA 59.232 37.500 0.00 0.00 39.39 3.28
397 398 5.420739 ACATATCCGTGGCTTTTTACCAAAT 59.579 36.000 0.00 0.00 39.39 2.32
398 399 3.651803 TCCGTGGCTTTTTACCAAATG 57.348 42.857 0.00 0.00 39.39 2.32
399 400 2.959707 TCCGTGGCTTTTTACCAAATGT 59.040 40.909 0.00 0.00 39.39 2.71
400 401 3.385111 TCCGTGGCTTTTTACCAAATGTT 59.615 39.130 0.00 0.00 39.39 2.71
401 402 4.123506 CCGTGGCTTTTTACCAAATGTTT 58.876 39.130 0.00 0.00 39.39 2.83
402 403 5.068723 TCCGTGGCTTTTTACCAAATGTTTA 59.931 36.000 0.00 0.00 39.39 2.01
403 404 5.929415 CCGTGGCTTTTTACCAAATGTTTAT 59.071 36.000 0.00 0.00 39.39 1.40
404 405 7.039923 TCCGTGGCTTTTTACCAAATGTTTATA 60.040 33.333 0.00 0.00 39.39 0.98
405 406 7.062488 CCGTGGCTTTTTACCAAATGTTTATAC 59.938 37.037 0.00 0.00 39.39 1.47
406 407 7.595502 CGTGGCTTTTTACCAAATGTTTATACA 59.404 33.333 0.00 0.00 39.39 2.29
407 408 9.262358 GTGGCTTTTTACCAAATGTTTATACAA 57.738 29.630 0.00 0.00 39.39 2.41
446 447 9.968870 TCCATACCATTTAAAAAGTTGTACAAC 57.031 29.630 27.72 27.72 41.45 3.32
447 448 8.907685 CCATACCATTTAAAAAGTTGTACAACG 58.092 33.333 28.21 14.96 45.50 4.10
448 449 9.453325 CATACCATTTAAAAAGTTGTACAACGT 57.547 29.630 28.21 24.10 45.50 3.99
449 450 7.743520 ACCATTTAAAAAGTTGTACAACGTG 57.256 32.000 28.21 15.29 45.50 4.49
450 451 7.314393 ACCATTTAAAAAGTTGTACAACGTGT 58.686 30.769 28.21 20.15 45.50 4.49
451 452 8.457261 ACCATTTAAAAAGTTGTACAACGTGTA 58.543 29.630 28.21 19.10 45.50 2.90
452 453 9.453325 CCATTTAAAAAGTTGTACAACGTGTAT 57.547 29.630 28.21 18.26 45.50 2.29
457 458 8.967552 AAAAAGTTGTACAACGTGTATTTGAA 57.032 26.923 28.21 0.00 45.50 2.69
458 459 8.967552 AAAAGTTGTACAACGTGTATTTGAAA 57.032 26.923 28.21 0.00 45.50 2.69
459 460 8.967552 AAAGTTGTACAACGTGTATTTGAAAA 57.032 26.923 28.21 0.00 45.50 2.29
460 461 8.967552 AAGTTGTACAACGTGTATTTGAAAAA 57.032 26.923 28.21 0.00 45.50 1.94
461 462 9.575783 AAGTTGTACAACGTGTATTTGAAAAAT 57.424 25.926 28.21 6.63 45.50 1.82
462 463 9.015577 AGTTGTACAACGTGTATTTGAAAAATG 57.984 29.630 28.21 0.00 45.50 2.32
463 464 8.800031 GTTGTACAACGTGTATTTGAAAAATGT 58.200 29.630 22.16 0.00 35.05 2.71
464 465 8.912787 TGTACAACGTGTATTTGAAAAATGTT 57.087 26.923 0.00 0.00 35.05 2.71
465 466 9.355215 TGTACAACGTGTATTTGAAAAATGTTT 57.645 25.926 0.00 0.00 35.05 2.83
480 481 9.658799 TGAAAAATGTTTAACATGAAAACAGGA 57.341 25.926 24.56 10.90 46.66 3.86
493 494 9.829507 ACATGAAAACAGGAAAATAATCAAACA 57.170 25.926 0.00 0.00 0.00 2.83
496 497 9.829507 TGAAAACAGGAAAATAATCAAACATGT 57.170 25.926 0.00 0.00 0.00 3.21
556 557 8.703604 ACACATGTATACAGAAGATGTACAAC 57.296 34.615 11.91 0.00 47.00 3.32
557 558 7.488150 ACACATGTATACAGAAGATGTACAACG 59.512 37.037 11.91 1.44 47.00 4.10
558 559 7.488150 CACATGTATACAGAAGATGTACAACGT 59.512 37.037 11.91 0.00 47.00 3.99
559 560 7.488150 ACATGTATACAGAAGATGTACAACGTG 59.512 37.037 11.91 15.84 47.00 4.49
560 561 6.916440 TGTATACAGAAGATGTACAACGTGT 58.084 36.000 0.08 6.83 47.00 4.49
561 562 8.042944 TGTATACAGAAGATGTACAACGTGTA 57.957 34.615 0.08 8.78 47.00 2.90
562 563 8.680001 TGTATACAGAAGATGTACAACGTGTAT 58.320 33.333 21.24 21.24 47.00 2.29
563 564 9.512435 GTATACAGAAGATGTACAACGTGTATT 57.488 33.333 22.01 13.09 47.00 1.89
564 565 6.706055 ACAGAAGATGTACAACGTGTATTG 57.294 37.500 0.00 0.00 41.60 1.90
565 566 6.452242 ACAGAAGATGTACAACGTGTATTGA 58.548 36.000 0.00 0.00 41.60 2.57
566 567 6.926826 ACAGAAGATGTACAACGTGTATTGAA 59.073 34.615 0.00 0.00 41.60 2.69
567 568 7.439955 ACAGAAGATGTACAACGTGTATTGAAA 59.560 33.333 0.00 0.00 41.60 2.69
568 569 7.952101 CAGAAGATGTACAACGTGTATTGAAAG 59.048 37.037 0.00 0.00 35.05 2.62
569 570 7.870954 AGAAGATGTACAACGTGTATTGAAAGA 59.129 33.333 0.00 0.00 35.05 2.52
570 571 7.956420 AGATGTACAACGTGTATTGAAAGAA 57.044 32.000 0.00 0.00 35.05 2.52
571 572 8.018677 AGATGTACAACGTGTATTGAAAGAAG 57.981 34.615 0.00 0.00 35.05 2.85
572 573 7.656137 AGATGTACAACGTGTATTGAAAGAAGT 59.344 33.333 0.00 0.00 35.05 3.01
573 574 7.169035 TGTACAACGTGTATTGAAAGAAGTC 57.831 36.000 0.00 0.00 35.05 3.01
574 575 5.324739 ACAACGTGTATTGAAAGAAGTCG 57.675 39.130 0.00 0.00 33.57 4.18
575 576 4.210537 ACAACGTGTATTGAAAGAAGTCGG 59.789 41.667 0.00 0.00 33.57 4.79
576 577 2.735134 ACGTGTATTGAAAGAAGTCGGC 59.265 45.455 0.00 0.00 0.00 5.54
577 578 2.734606 CGTGTATTGAAAGAAGTCGGCA 59.265 45.455 0.00 0.00 0.00 5.69
578 579 3.370978 CGTGTATTGAAAGAAGTCGGCAT 59.629 43.478 0.00 0.00 0.00 4.40
579 580 4.651994 GTGTATTGAAAGAAGTCGGCATG 58.348 43.478 0.00 0.00 0.00 4.06
580 581 4.154195 GTGTATTGAAAGAAGTCGGCATGT 59.846 41.667 0.00 0.00 0.00 3.21
581 582 5.350365 GTGTATTGAAAGAAGTCGGCATGTA 59.650 40.000 0.00 0.00 0.00 2.29
582 583 6.037172 GTGTATTGAAAGAAGTCGGCATGTAT 59.963 38.462 0.00 0.00 0.00 2.29
583 584 6.597672 TGTATTGAAAGAAGTCGGCATGTATT 59.402 34.615 0.00 0.00 0.00 1.89
584 585 5.957842 TTGAAAGAAGTCGGCATGTATTT 57.042 34.783 0.00 0.00 0.00 1.40
585 586 5.295431 TGAAAGAAGTCGGCATGTATTTG 57.705 39.130 0.00 0.00 0.00 2.32
586 587 5.000591 TGAAAGAAGTCGGCATGTATTTGA 58.999 37.500 0.00 0.00 0.00 2.69
587 588 5.471797 TGAAAGAAGTCGGCATGTATTTGAA 59.528 36.000 0.00 0.00 0.00 2.69
588 589 5.957842 AAGAAGTCGGCATGTATTTGAAA 57.042 34.783 0.00 0.00 0.00 2.69
589 590 5.551760 AGAAGTCGGCATGTATTTGAAAG 57.448 39.130 0.00 0.00 0.00 2.62
590 591 5.245531 AGAAGTCGGCATGTATTTGAAAGA 58.754 37.500 0.00 0.00 0.00 2.52
591 592 4.946784 AGTCGGCATGTATTTGAAAGAC 57.053 40.909 0.00 0.00 0.00 3.01
592 593 4.323417 AGTCGGCATGTATTTGAAAGACA 58.677 39.130 7.90 7.90 0.00 3.41
593 594 4.759693 AGTCGGCATGTATTTGAAAGACAA 59.240 37.500 9.57 0.00 36.65 3.18
604 605 9.698309 TGTATTTGAAAGACAAACACAGAAAAA 57.302 25.926 2.51 0.00 46.46 1.94
639 640 8.437360 AAAACCCAAAGAAAATTGATGAGAAC 57.563 30.769 0.00 0.00 31.84 3.01
640 641 6.729690 ACCCAAAGAAAATTGATGAGAACA 57.270 33.333 0.00 0.00 31.84 3.18
641 642 7.123355 ACCCAAAGAAAATTGATGAGAACAA 57.877 32.000 0.00 0.00 31.84 2.83
642 643 7.738847 ACCCAAAGAAAATTGATGAGAACAAT 58.261 30.769 0.00 0.00 39.25 2.71
643 644 8.869109 ACCCAAAGAAAATTGATGAGAACAATA 58.131 29.630 0.00 0.00 37.04 1.90
644 645 9.709495 CCCAAAGAAAATTGATGAGAACAATAA 57.291 29.630 0.00 0.00 37.04 1.40
654 655 9.683069 ATTGATGAGAACAATAAAAAGACACAC 57.317 29.630 0.00 0.00 36.40 3.82
655 656 8.219546 TGATGAGAACAATAAAAAGACACACA 57.780 30.769 0.00 0.00 0.00 3.72
656 657 8.849168 TGATGAGAACAATAAAAAGACACACAT 58.151 29.630 0.00 0.00 0.00 3.21
659 660 9.554395 TGAGAACAATAAAAAGACACACATAGA 57.446 29.630 0.00 0.00 0.00 1.98
669 670 9.561069 AAAAAGACACACATAGAAAGATAGTGT 57.439 29.630 0.00 0.00 43.56 3.55
673 674 8.401046 GACACACATAGAAAGATAGTGTCTTC 57.599 38.462 13.66 0.00 46.39 2.87
674 675 8.128322 ACACACATAGAAAGATAGTGTCTTCT 57.872 34.615 2.26 5.06 46.39 2.85
675 676 8.247562 ACACACATAGAAAGATAGTGTCTTCTC 58.752 37.037 2.26 3.76 46.39 2.87
676 677 8.465999 CACACATAGAAAGATAGTGTCTTCTCT 58.534 37.037 2.26 10.00 46.39 3.10
677 678 8.682710 ACACATAGAAAGATAGTGTCTTCTCTC 58.317 37.037 13.54 5.19 46.39 3.20
678 679 8.134895 CACATAGAAAGATAGTGTCTTCTCTCC 58.865 40.741 13.54 0.53 46.39 3.71
679 680 7.286775 ACATAGAAAGATAGTGTCTTCTCTCCC 59.713 40.741 13.54 0.00 46.39 4.30
680 681 4.959839 AGAAAGATAGTGTCTTCTCTCCCC 59.040 45.833 2.26 0.00 46.39 4.81
681 682 4.618378 AAGATAGTGTCTTCTCTCCCCT 57.382 45.455 0.00 0.00 43.74 4.79
682 683 5.735733 AAGATAGTGTCTTCTCTCCCCTA 57.264 43.478 0.00 0.00 43.74 3.53
683 684 5.941146 AGATAGTGTCTTCTCTCCCCTAT 57.059 43.478 0.00 0.00 31.47 2.57
684 685 6.288096 AGATAGTGTCTTCTCTCCCCTATT 57.712 41.667 0.00 0.00 31.47 1.73
685 686 6.688554 AGATAGTGTCTTCTCTCCCCTATTT 58.311 40.000 0.00 0.00 31.47 1.40
686 687 7.827787 AGATAGTGTCTTCTCTCCCCTATTTA 58.172 38.462 0.00 0.00 31.47 1.40
687 688 8.290277 AGATAGTGTCTTCTCTCCCCTATTTAA 58.710 37.037 0.00 0.00 31.47 1.52
688 689 8.855804 ATAGTGTCTTCTCTCCCCTATTTAAA 57.144 34.615 0.00 0.00 0.00 1.52
689 690 7.569599 AGTGTCTTCTCTCCCCTATTTAAAA 57.430 36.000 0.00 0.00 0.00 1.52
690 691 7.625469 AGTGTCTTCTCTCCCCTATTTAAAAG 58.375 38.462 0.00 0.00 0.00 2.27
691 692 7.458170 AGTGTCTTCTCTCCCCTATTTAAAAGA 59.542 37.037 0.00 0.00 0.00 2.52
692 693 8.268605 GTGTCTTCTCTCCCCTATTTAAAAGAT 58.731 37.037 0.00 0.00 0.00 2.40
693 694 9.502035 TGTCTTCTCTCCCCTATTTAAAAGATA 57.498 33.333 0.00 0.00 0.00 1.98
739 740 9.453572 AAGATATGTAAGTTCTCATTTTGCTCA 57.546 29.630 0.02 0.00 0.00 4.26
740 741 9.624373 AGATATGTAAGTTCTCATTTTGCTCAT 57.376 29.630 0.02 0.00 0.00 2.90
741 742 9.875675 GATATGTAAGTTCTCATTTTGCTCATC 57.124 33.333 0.02 0.00 0.00 2.92
742 743 7.934855 ATGTAAGTTCTCATTTTGCTCATCT 57.065 32.000 0.00 0.00 0.00 2.90
743 744 7.750229 TGTAAGTTCTCATTTTGCTCATCTT 57.250 32.000 0.00 0.00 0.00 2.40
744 745 8.169977 TGTAAGTTCTCATTTTGCTCATCTTT 57.830 30.769 0.00 0.00 0.00 2.52
745 746 8.632679 TGTAAGTTCTCATTTTGCTCATCTTTT 58.367 29.630 0.00 0.00 0.00 2.27
746 747 7.941795 AAGTTCTCATTTTGCTCATCTTTTG 57.058 32.000 0.00 0.00 0.00 2.44
747 748 7.047460 AGTTCTCATTTTGCTCATCTTTTGT 57.953 32.000 0.00 0.00 0.00 2.83
748 749 7.144000 AGTTCTCATTTTGCTCATCTTTTGTC 58.856 34.615 0.00 0.00 0.00 3.18
749 750 6.638096 TCTCATTTTGCTCATCTTTTGTCA 57.362 33.333 0.00 0.00 0.00 3.58
750 751 7.041635 TCTCATTTTGCTCATCTTTTGTCAA 57.958 32.000 0.00 0.00 0.00 3.18
751 752 6.919662 TCTCATTTTGCTCATCTTTTGTCAAC 59.080 34.615 0.00 0.00 0.00 3.18
752 753 5.984926 TCATTTTGCTCATCTTTTGTCAACC 59.015 36.000 0.00 0.00 0.00 3.77
753 754 4.320608 TTTGCTCATCTTTTGTCAACCC 57.679 40.909 0.00 0.00 0.00 4.11
754 755 2.238521 TGCTCATCTTTTGTCAACCCC 58.761 47.619 0.00 0.00 0.00 4.95
755 756 2.158475 TGCTCATCTTTTGTCAACCCCT 60.158 45.455 0.00 0.00 0.00 4.79
756 757 2.489722 GCTCATCTTTTGTCAACCCCTC 59.510 50.000 0.00 0.00 0.00 4.30
757 758 3.812167 GCTCATCTTTTGTCAACCCCTCT 60.812 47.826 0.00 0.00 0.00 3.69
758 759 4.565652 GCTCATCTTTTGTCAACCCCTCTA 60.566 45.833 0.00 0.00 0.00 2.43
759 760 5.749462 CTCATCTTTTGTCAACCCCTCTAT 58.251 41.667 0.00 0.00 0.00 1.98
760 761 5.500234 TCATCTTTTGTCAACCCCTCTATG 58.500 41.667 0.00 0.00 0.00 2.23
761 762 3.686016 TCTTTTGTCAACCCCTCTATGC 58.314 45.455 0.00 0.00 0.00 3.14
762 763 2.507407 TTTGTCAACCCCTCTATGCC 57.493 50.000 0.00 0.00 0.00 4.40
763 764 1.367346 TTGTCAACCCCTCTATGCCA 58.633 50.000 0.00 0.00 0.00 4.92
764 765 1.367346 TGTCAACCCCTCTATGCCAA 58.633 50.000 0.00 0.00 0.00 4.52
765 766 1.922447 TGTCAACCCCTCTATGCCAAT 59.078 47.619 0.00 0.00 0.00 3.16
766 767 2.301346 GTCAACCCCTCTATGCCAATG 58.699 52.381 0.00 0.00 0.00 2.82
767 768 1.215173 TCAACCCCTCTATGCCAATGG 59.785 52.381 0.00 0.00 0.00 3.16
768 769 0.557729 AACCCCTCTATGCCAATGGG 59.442 55.000 0.00 0.00 39.02 4.00
770 771 2.555633 CCCTCTATGCCAATGGGGA 58.444 57.895 0.00 0.00 40.01 4.81
771 772 0.852842 CCCTCTATGCCAATGGGGAA 59.147 55.000 0.00 0.00 38.38 3.97
772 773 1.217689 CCCTCTATGCCAATGGGGAAA 59.782 52.381 0.00 0.00 38.38 3.13
773 774 2.359143 CCCTCTATGCCAATGGGGAAAA 60.359 50.000 0.00 0.00 38.38 2.29
774 775 3.580039 CCTCTATGCCAATGGGGAAAAT 58.420 45.455 0.00 0.00 38.38 1.82
775 776 4.449081 CCCTCTATGCCAATGGGGAAAATA 60.449 45.833 0.00 0.00 38.38 1.40
776 777 5.147032 CCTCTATGCCAATGGGGAAAATAA 58.853 41.667 0.00 0.00 38.38 1.40
777 778 5.602145 CCTCTATGCCAATGGGGAAAATAAA 59.398 40.000 0.00 0.00 38.38 1.40
778 779 6.099557 CCTCTATGCCAATGGGGAAAATAAAA 59.900 38.462 0.00 0.00 38.38 1.52
779 780 7.202121 CCTCTATGCCAATGGGGAAAATAAAAT 60.202 37.037 0.00 0.00 38.38 1.82
780 781 8.789767 TCTATGCCAATGGGGAAAATAAAATA 57.210 30.769 0.00 0.00 38.38 1.40
781 782 9.218525 TCTATGCCAATGGGGAAAATAAAATAA 57.781 29.630 0.00 0.00 38.38 1.40
782 783 9.844257 CTATGCCAATGGGGAAAATAAAATAAA 57.156 29.630 0.00 0.00 38.38 1.40
784 785 9.712250 ATGCCAATGGGGAAAATAAAATAAATT 57.288 25.926 0.00 0.00 38.38 1.82
791 792 9.680315 TGGGGAAAATAAAATAAATTATACGCG 57.320 29.630 3.53 3.53 0.00 6.01
792 793 9.131416 GGGGAAAATAAAATAAATTATACGCGG 57.869 33.333 12.47 0.00 0.00 6.46
793 794 9.896263 GGGAAAATAAAATAAATTATACGCGGA 57.104 29.630 12.47 0.00 0.00 5.54
815 816 1.238439 AATTAATGCGCATCCCCTCG 58.762 50.000 25.53 0.00 0.00 4.63
827 828 2.885644 CCCTCGACCGCACGATTG 60.886 66.667 0.00 0.00 41.39 2.67
887 888 3.695606 GCCAGTGCTCGGTGGAGA 61.696 66.667 0.00 0.00 43.27 3.71
888 889 3.059982 CCAGTGCTCGGTGGAGAA 58.940 61.111 0.00 0.00 43.27 2.87
916 917 2.667137 GGATCTCGCGTTATCCTGAAG 58.333 52.381 25.31 7.17 38.92 3.02
961 962 2.058595 GCCCTCTAGACCTTCCGCA 61.059 63.158 0.00 0.00 0.00 5.69
1067 1068 4.973055 CCGCCGTCCACGAAACCA 62.973 66.667 0.00 0.00 43.02 3.67
1437 1453 0.963225 TCGTGTACAACTGCCTGCTA 59.037 50.000 0.00 0.00 0.00 3.49
1551 1567 1.183549 ACACCCTGATGTCCGTCTAC 58.816 55.000 0.00 0.00 0.00 2.59
1567 1583 1.078759 CTACGTCGAGCAAGGCAAGG 61.079 60.000 0.00 0.00 0.00 3.61
1578 1594 1.831652 AAGGCAAGGTCGAGGAGGTG 61.832 60.000 0.00 0.00 0.00 4.00
1728 1744 1.741770 GAGGCACAAGAACGGCGAT 60.742 57.895 16.62 0.00 0.00 4.58
1860 1876 2.568090 GGTGCGGCATTGAAGGTG 59.432 61.111 5.72 0.00 0.00 4.00
2105 2121 2.124942 GCTGGAGAAAGGCCCGAG 60.125 66.667 0.00 0.00 0.00 4.63
2139 2155 0.459237 CACACGAGCTCATCAGGTCC 60.459 60.000 15.40 0.00 43.26 4.46
2412 2428 4.803426 GACGAGGCGCTGAGGGTG 62.803 72.222 7.64 0.00 0.00 4.61
2637 2653 2.422479 CCACAGGATGAAGATGCACAAG 59.578 50.000 0.00 0.00 39.69 3.16
2688 2704 0.674581 TGATCGAAGCCCTTGTGCAG 60.675 55.000 0.00 0.00 0.00 4.41
2819 2835 3.068024 GGCTCTCCTGTTGATCTCACTAG 59.932 52.174 0.00 0.00 0.00 2.57
2878 2895 7.252865 CGTCAAGATAAACGGCGAATTTTAAAG 60.253 37.037 16.62 0.97 35.32 1.85
2898 2916 5.367945 AAGAACTTCTTGTGTTGAGGGTA 57.632 39.130 3.07 0.00 34.98 3.69
2911 2929 4.638421 TGTTGAGGGTATTAATTCCTTGCG 59.362 41.667 10.57 0.00 0.00 4.85
3067 3092 8.650143 AAAAACTACCACATTTCATGTATCCT 57.350 30.769 0.00 0.00 42.70 3.24
3069 3094 8.650143 AAACTACCACATTTCATGTATCCTTT 57.350 30.769 0.00 0.00 42.70 3.11
3083 3108 3.611766 ATCCTTTCCACAGAACTACCG 57.388 47.619 0.00 0.00 0.00 4.02
3116 3141 7.654022 AAACTGACCAAAAACTCCAGATTAA 57.346 32.000 0.00 0.00 0.00 1.40
3118 3143 8.934023 AACTGACCAAAAACTCCAGATTAATA 57.066 30.769 0.00 0.00 0.00 0.98
3119 3144 9.533831 AACTGACCAAAAACTCCAGATTAATAT 57.466 29.630 0.00 0.00 0.00 1.28
3201 3226 1.203441 TTCTGACAGAGCTGGCCCAT 61.203 55.000 5.10 0.00 37.98 4.00
3322 3354 4.008933 GCAGAGCAGGACACCGGT 62.009 66.667 0.00 0.00 0.00 5.28
3334 3366 2.561478 ACACCGGTGTCAGCTAAATT 57.439 45.000 34.41 7.89 40.24 1.82
3420 3452 4.175337 CCACCATCGTCCCCGCAT 62.175 66.667 0.00 0.00 0.00 4.73
3601 3633 4.102815 TATGCGCCGAAGCCCCAA 62.103 61.111 4.18 0.00 36.02 4.12
3626 3658 0.176449 CTCCAGCACCATCATCACGA 59.824 55.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.977854 AGTCTGCCCAGTCATAACACA 59.022 47.619 0.00 0.00 0.00 3.72
1 2 2.770164 AGTCTGCCCAGTCATAACAC 57.230 50.000 0.00 0.00 0.00 3.32
2 3 4.384098 CCATAAGTCTGCCCAGTCATAACA 60.384 45.833 0.00 0.00 0.00 2.41
3 4 4.130118 CCATAAGTCTGCCCAGTCATAAC 58.870 47.826 0.00 0.00 0.00 1.89
4 5 3.433598 GCCATAAGTCTGCCCAGTCATAA 60.434 47.826 0.00 0.00 0.00 1.90
5 6 2.104792 GCCATAAGTCTGCCCAGTCATA 59.895 50.000 0.00 0.00 0.00 2.15
8 9 0.464554 GGCCATAAGTCTGCCCAGTC 60.465 60.000 0.00 0.00 39.30 3.51
9 10 1.609783 GGCCATAAGTCTGCCCAGT 59.390 57.895 0.00 0.00 39.30 4.00
10 11 1.524621 CGGCCATAAGTCTGCCCAG 60.525 63.158 2.24 0.00 42.29 4.45
11 12 0.978667 TACGGCCATAAGTCTGCCCA 60.979 55.000 2.24 0.00 42.29 5.36
12 13 0.249911 CTACGGCCATAAGTCTGCCC 60.250 60.000 2.24 0.00 42.29 5.36
13 14 0.249911 CCTACGGCCATAAGTCTGCC 60.250 60.000 2.24 0.00 41.85 4.85
14 15 0.750850 TCCTACGGCCATAAGTCTGC 59.249 55.000 2.24 0.00 0.00 4.26
15 16 1.341531 CCTCCTACGGCCATAAGTCTG 59.658 57.143 2.24 0.00 0.00 3.51
16 17 1.705873 CCTCCTACGGCCATAAGTCT 58.294 55.000 2.24 0.00 0.00 3.24
17 18 0.033642 GCCTCCTACGGCCATAAGTC 59.966 60.000 2.24 0.00 44.41 3.01
18 19 2.134092 GCCTCCTACGGCCATAAGT 58.866 57.895 2.24 0.00 44.41 2.24
26 27 3.470888 CTGGTGGGCCTCCTACGG 61.471 72.222 24.13 9.10 35.27 4.02
27 28 3.470888 CCTGGTGGGCCTCCTACG 61.471 72.222 24.13 12.79 35.27 3.51
36 37 2.514458 ATCTAAACTTGCCTGGTGGG 57.486 50.000 0.00 0.00 38.36 4.61
37 38 3.947834 CCTAATCTAAACTTGCCTGGTGG 59.052 47.826 0.00 0.00 0.00 4.61
38 39 3.947834 CCCTAATCTAAACTTGCCTGGTG 59.052 47.826 0.00 0.00 0.00 4.17
39 40 3.053619 CCCCTAATCTAAACTTGCCTGGT 60.054 47.826 0.00 0.00 0.00 4.00
40 41 3.555966 CCCCTAATCTAAACTTGCCTGG 58.444 50.000 0.00 0.00 0.00 4.45
41 42 2.952310 GCCCCTAATCTAAACTTGCCTG 59.048 50.000 0.00 0.00 0.00 4.85
42 43 2.853077 AGCCCCTAATCTAAACTTGCCT 59.147 45.455 0.00 0.00 0.00 4.75
43 44 3.298686 AGCCCCTAATCTAAACTTGCC 57.701 47.619 0.00 0.00 0.00 4.52
44 45 3.381590 CCAAGCCCCTAATCTAAACTTGC 59.618 47.826 0.00 0.00 33.42 4.01
45 46 3.381590 GCCAAGCCCCTAATCTAAACTTG 59.618 47.826 0.00 0.00 34.30 3.16
46 47 3.627492 GGCCAAGCCCCTAATCTAAACTT 60.627 47.826 0.00 0.00 44.06 2.66
47 48 2.091830 GGCCAAGCCCCTAATCTAAACT 60.092 50.000 0.00 0.00 44.06 2.66
48 49 2.307768 GGCCAAGCCCCTAATCTAAAC 58.692 52.381 0.00 0.00 44.06 2.01
49 50 2.748209 GGCCAAGCCCCTAATCTAAA 57.252 50.000 0.00 0.00 44.06 1.85
61 62 1.680338 AGATAATTCGTGGGCCAAGC 58.320 50.000 15.12 0.00 0.00 4.01
62 63 6.391227 AAATAAGATAATTCGTGGGCCAAG 57.609 37.500 8.40 11.48 0.00 3.61
63 64 6.378564 TGAAAATAAGATAATTCGTGGGCCAA 59.621 34.615 8.40 0.00 0.00 4.52
64 65 5.888724 TGAAAATAAGATAATTCGTGGGCCA 59.111 36.000 0.00 0.00 0.00 5.36
65 66 6.385649 TGAAAATAAGATAATTCGTGGGCC 57.614 37.500 0.00 0.00 0.00 5.80
66 67 5.915196 GCTGAAAATAAGATAATTCGTGGGC 59.085 40.000 0.00 0.00 0.00 5.36
67 68 7.026631 TGCTGAAAATAAGATAATTCGTGGG 57.973 36.000 0.00 0.00 0.00 4.61
68 69 8.961092 CAATGCTGAAAATAAGATAATTCGTGG 58.039 33.333 0.00 0.00 0.00 4.94
69 70 9.507280 ACAATGCTGAAAATAAGATAATTCGTG 57.493 29.630 0.00 0.00 0.00 4.35
70 71 9.507280 CACAATGCTGAAAATAAGATAATTCGT 57.493 29.630 0.00 0.00 0.00 3.85
71 72 8.961092 CCACAATGCTGAAAATAAGATAATTCG 58.039 33.333 0.00 0.00 0.00 3.34
72 73 9.807649 ACCACAATGCTGAAAATAAGATAATTC 57.192 29.630 0.00 0.00 0.00 2.17
85 86 9.653287 GCTAGTATATATAACCACAATGCTGAA 57.347 33.333 0.00 0.00 0.00 3.02
86 87 9.035890 AGCTAGTATATATAACCACAATGCTGA 57.964 33.333 0.00 0.00 0.00 4.26
87 88 9.091784 CAGCTAGTATATATAACCACAATGCTG 57.908 37.037 0.00 0.00 35.51 4.41
88 89 8.816894 ACAGCTAGTATATATAACCACAATGCT 58.183 33.333 0.00 0.00 0.00 3.79
133 134 8.993121 CGGACAATAGAATATGTCTTATTGCTT 58.007 33.333 5.95 0.00 44.20 3.91
134 135 7.604164 CCGGACAATAGAATATGTCTTATTGCT 59.396 37.037 0.00 0.00 44.20 3.91
135 136 7.624344 GCCGGACAATAGAATATGTCTTATTGC 60.624 40.741 5.05 0.00 44.20 3.56
136 137 7.604164 AGCCGGACAATAGAATATGTCTTATTG 59.396 37.037 5.05 2.50 44.20 1.90
137 138 7.680730 AGCCGGACAATAGAATATGTCTTATT 58.319 34.615 5.05 0.00 44.20 1.40
138 139 7.246171 AGCCGGACAATAGAATATGTCTTAT 57.754 36.000 5.05 0.00 44.20 1.73
139 140 6.295123 GGAGCCGGACAATAGAATATGTCTTA 60.295 42.308 5.05 0.00 44.20 2.10
140 141 5.511545 GGAGCCGGACAATAGAATATGTCTT 60.512 44.000 5.05 0.00 44.20 3.01
141 142 4.021016 GGAGCCGGACAATAGAATATGTCT 60.021 45.833 5.05 0.00 44.20 3.41
142 143 4.246458 GGAGCCGGACAATAGAATATGTC 58.754 47.826 5.05 0.00 44.07 3.06
143 144 3.008049 GGGAGCCGGACAATAGAATATGT 59.992 47.826 5.05 0.00 0.00 2.29
144 145 3.261897 AGGGAGCCGGACAATAGAATATG 59.738 47.826 5.05 0.00 0.00 1.78
145 146 3.261897 CAGGGAGCCGGACAATAGAATAT 59.738 47.826 5.05 0.00 0.00 1.28
146 147 2.632996 CAGGGAGCCGGACAATAGAATA 59.367 50.000 5.05 0.00 0.00 1.75
147 148 1.417890 CAGGGAGCCGGACAATAGAAT 59.582 52.381 5.05 0.00 0.00 2.40
148 149 0.830648 CAGGGAGCCGGACAATAGAA 59.169 55.000 5.05 0.00 0.00 2.10
149 150 0.032515 TCAGGGAGCCGGACAATAGA 60.033 55.000 5.05 0.00 0.00 1.98
150 151 0.830648 TTCAGGGAGCCGGACAATAG 59.169 55.000 5.05 0.00 0.00 1.73
151 152 0.830648 CTTCAGGGAGCCGGACAATA 59.169 55.000 5.05 0.00 0.00 1.90
152 153 1.604378 CTTCAGGGAGCCGGACAAT 59.396 57.895 5.05 0.00 0.00 2.71
153 154 2.592993 CCTTCAGGGAGCCGGACAA 61.593 63.158 5.05 0.00 37.23 3.18
154 155 3.003173 CCTTCAGGGAGCCGGACA 61.003 66.667 5.05 0.00 37.23 4.02
155 156 2.683933 TCCTTCAGGGAGCCGGAC 60.684 66.667 5.05 0.00 39.58 4.79
162 163 2.121832 TTCCGGCTCCTTCAGGGA 59.878 61.111 0.00 0.00 42.77 4.20
163 164 2.269241 GTTCCGGCTCCTTCAGGG 59.731 66.667 0.00 0.00 35.41 4.45
164 165 2.269241 GGTTCCGGCTCCTTCAGG 59.731 66.667 0.00 0.00 0.00 3.86
165 166 0.976073 TAGGGTTCCGGCTCCTTCAG 60.976 60.000 13.78 0.00 32.46 3.02
166 167 0.545787 TTAGGGTTCCGGCTCCTTCA 60.546 55.000 13.78 0.00 32.46 3.02
167 168 0.107800 GTTAGGGTTCCGGCTCCTTC 60.108 60.000 13.78 6.19 32.46 3.46
168 169 1.559965 GGTTAGGGTTCCGGCTCCTT 61.560 60.000 13.78 9.38 32.46 3.36
169 170 1.993948 GGTTAGGGTTCCGGCTCCT 60.994 63.158 13.24 13.24 34.85 3.69
170 171 2.588439 GGTTAGGGTTCCGGCTCC 59.412 66.667 0.00 0.53 0.00 4.70
171 172 0.688749 TAGGGTTAGGGTTCCGGCTC 60.689 60.000 0.00 0.00 0.00 4.70
172 173 0.690077 CTAGGGTTAGGGTTCCGGCT 60.690 60.000 0.00 0.00 0.00 5.52
173 174 1.828081 CTAGGGTTAGGGTTCCGGC 59.172 63.158 0.00 0.00 0.00 6.13
174 175 1.693152 GGCTAGGGTTAGGGTTCCGG 61.693 65.000 0.00 0.00 0.00 5.14
175 176 1.828081 GGCTAGGGTTAGGGTTCCG 59.172 63.158 0.00 0.00 0.00 4.30
176 177 1.828081 CGGCTAGGGTTAGGGTTCC 59.172 63.158 0.00 0.00 0.00 3.62
177 178 1.145598 GCGGCTAGGGTTAGGGTTC 59.854 63.158 0.00 0.00 0.00 3.62
178 179 1.614226 TGCGGCTAGGGTTAGGGTT 60.614 57.895 0.00 0.00 0.00 4.11
179 180 2.039951 TGCGGCTAGGGTTAGGGT 59.960 61.111 0.00 0.00 0.00 4.34
180 181 2.504519 GTGCGGCTAGGGTTAGGG 59.495 66.667 0.00 0.00 0.00 3.53
181 182 2.363975 TGGTGCGGCTAGGGTTAGG 61.364 63.158 0.00 0.00 0.00 2.69
182 183 1.153429 GTGGTGCGGCTAGGGTTAG 60.153 63.158 0.00 0.00 0.00 2.34
183 184 2.662070 GGTGGTGCGGCTAGGGTTA 61.662 63.158 0.00 0.00 0.00 2.85
184 185 4.029809 GGTGGTGCGGCTAGGGTT 62.030 66.667 0.00 0.00 0.00 4.11
186 187 4.162690 GAGGTGGTGCGGCTAGGG 62.163 72.222 0.00 0.00 0.00 3.53
187 188 4.162690 GGAGGTGGTGCGGCTAGG 62.163 72.222 0.00 0.00 0.00 3.02
188 189 4.162690 GGGAGGTGGTGCGGCTAG 62.163 72.222 0.00 0.00 0.00 3.42
189 190 4.715130 AGGGAGGTGGTGCGGCTA 62.715 66.667 0.00 0.00 0.00 3.93
192 193 3.775654 GAGAGGGAGGTGGTGCGG 61.776 72.222 0.00 0.00 0.00 5.69
193 194 4.135153 CGAGAGGGAGGTGGTGCG 62.135 72.222 0.00 0.00 0.00 5.34
194 195 4.459089 GCGAGAGGGAGGTGGTGC 62.459 72.222 0.00 0.00 0.00 5.01
195 196 3.775654 GGCGAGAGGGAGGTGGTG 61.776 72.222 0.00 0.00 0.00 4.17
213 214 4.816984 TCGGGAGAGGGAGACGGC 62.817 72.222 0.00 0.00 0.00 5.68
214 215 1.899534 GATCGGGAGAGGGAGACGG 60.900 68.421 0.00 0.00 45.48 4.79
215 216 1.152943 TGATCGGGAGAGGGAGACG 60.153 63.158 0.00 0.00 45.48 4.18
216 217 0.825840 CCTGATCGGGAGAGGGAGAC 60.826 65.000 16.28 0.00 45.48 3.36
217 218 0.994050 TCCTGATCGGGAGAGGGAGA 60.994 60.000 19.95 0.00 45.48 3.71
218 219 0.825840 GTCCTGATCGGGAGAGGGAG 60.826 65.000 24.22 0.00 45.48 4.30
219 220 1.230497 GTCCTGATCGGGAGAGGGA 59.770 63.158 24.22 0.00 45.48 4.20
220 221 1.075970 TGTCCTGATCGGGAGAGGG 60.076 63.158 24.22 0.00 45.48 4.30
221 222 1.743321 GCTGTCCTGATCGGGAGAGG 61.743 65.000 36.37 23.54 44.11 3.69
222 223 1.739049 GCTGTCCTGATCGGGAGAG 59.261 63.158 33.66 33.66 45.93 3.20
223 224 2.121538 CGCTGTCCTGATCGGGAGA 61.122 63.158 24.22 21.38 46.90 3.71
224 225 2.415010 CGCTGTCCTGATCGGGAG 59.585 66.667 24.22 14.09 35.87 4.30
225 226 3.838271 GCGCTGTCCTGATCGGGA 61.838 66.667 19.95 19.95 0.00 5.14
226 227 4.899239 GGCGCTGTCCTGATCGGG 62.899 72.222 15.09 15.09 0.00 5.14
227 228 4.899239 GGGCGCTGTCCTGATCGG 62.899 72.222 7.64 0.00 0.00 4.18
228 229 4.147449 TGGGCGCTGTCCTGATCG 62.147 66.667 7.64 0.00 0.00 3.69
229 230 2.512515 GTGGGCGCTGTCCTGATC 60.513 66.667 7.64 0.00 0.00 2.92
230 231 4.457496 CGTGGGCGCTGTCCTGAT 62.457 66.667 7.64 0.00 0.00 2.90
259 260 2.298158 GAAGATGAAGGCGAGGGCGA 62.298 60.000 0.00 0.00 41.24 5.54
260 261 1.884926 GAAGATGAAGGCGAGGGCG 60.885 63.158 0.00 0.00 41.24 6.13
261 262 1.524849 GGAAGATGAAGGCGAGGGC 60.525 63.158 0.00 0.00 38.90 5.19
262 263 1.147153 GGGAAGATGAAGGCGAGGG 59.853 63.158 0.00 0.00 0.00 4.30
263 264 1.147153 GGGGAAGATGAAGGCGAGG 59.853 63.158 0.00 0.00 0.00 4.63
264 265 1.147153 GGGGGAAGATGAAGGCGAG 59.853 63.158 0.00 0.00 0.00 5.03
265 266 1.306997 AGGGGGAAGATGAAGGCGA 60.307 57.895 0.00 0.00 0.00 5.54
266 267 1.153086 CAGGGGGAAGATGAAGGCG 60.153 63.158 0.00 0.00 0.00 5.52
267 268 1.454663 GCAGGGGGAAGATGAAGGC 60.455 63.158 0.00 0.00 0.00 4.35
268 269 1.228510 GGCAGGGGGAAGATGAAGG 59.771 63.158 0.00 0.00 0.00 3.46
269 270 0.106819 CAGGCAGGGGGAAGATGAAG 60.107 60.000 0.00 0.00 0.00 3.02
270 271 2.001803 CAGGCAGGGGGAAGATGAA 58.998 57.895 0.00 0.00 0.00 2.57
271 272 2.683465 GCAGGCAGGGGGAAGATGA 61.683 63.158 0.00 0.00 0.00 2.92
272 273 2.123982 GCAGGCAGGGGGAAGATG 60.124 66.667 0.00 0.00 0.00 2.90
273 274 3.424105 GGCAGGCAGGGGGAAGAT 61.424 66.667 0.00 0.00 0.00 2.40
280 281 3.338250 TTGTAGGGGCAGGCAGGG 61.338 66.667 0.00 0.00 0.00 4.45
281 282 2.044946 GTTGTAGGGGCAGGCAGG 60.045 66.667 0.00 0.00 0.00 4.85
282 283 1.271840 TAGGTTGTAGGGGCAGGCAG 61.272 60.000 0.00 0.00 0.00 4.85
283 284 0.842905 TTAGGTTGTAGGGGCAGGCA 60.843 55.000 0.00 0.00 0.00 4.75
284 285 0.107165 CTTAGGTTGTAGGGGCAGGC 60.107 60.000 0.00 0.00 0.00 4.85
285 286 0.546598 CCTTAGGTTGTAGGGGCAGG 59.453 60.000 0.00 0.00 0.00 4.85
286 287 1.486726 CTCCTTAGGTTGTAGGGGCAG 59.513 57.143 0.00 0.00 32.20 4.85
287 288 1.580059 CTCCTTAGGTTGTAGGGGCA 58.420 55.000 0.00 0.00 32.20 5.36
289 290 1.486726 CTGCTCCTTAGGTTGTAGGGG 59.513 57.143 0.00 0.00 34.98 4.79
290 291 1.486726 CCTGCTCCTTAGGTTGTAGGG 59.513 57.143 17.35 4.23 31.55 3.53
291 292 2.188817 ACCTGCTCCTTAGGTTGTAGG 58.811 52.381 20.98 20.98 46.13 3.18
298 299 0.396695 TACCGGACCTGCTCCTTAGG 60.397 60.000 9.46 0.00 41.22 2.69
299 300 1.033574 CTACCGGACCTGCTCCTTAG 58.966 60.000 9.46 0.00 36.80 2.18
300 301 0.396695 CCTACCGGACCTGCTCCTTA 60.397 60.000 9.46 0.00 36.80 2.69
301 302 1.686110 CCTACCGGACCTGCTCCTT 60.686 63.158 9.46 0.00 36.80 3.36
302 303 2.042843 CCTACCGGACCTGCTCCT 60.043 66.667 9.46 0.00 36.80 3.69
303 304 2.043248 TCCTACCGGACCTGCTCC 60.043 66.667 9.46 0.00 33.30 4.70
311 312 2.810488 GAACCCAGGGTCCTACCGGA 62.810 65.000 13.17 0.00 39.83 5.14
312 313 2.285144 AACCCAGGGTCCTACCGG 60.285 66.667 13.17 0.00 39.83 5.28
313 314 0.032813 TAGAACCCAGGGTCCTACCG 60.033 60.000 13.17 0.00 39.83 4.02
314 315 1.493861 GTAGAACCCAGGGTCCTACC 58.506 60.000 22.18 6.28 33.12 3.18
315 316 1.273438 TGGTAGAACCCAGGGTCCTAC 60.273 57.143 24.18 24.18 37.50 3.18
316 317 1.095130 TGGTAGAACCCAGGGTCCTA 58.905 55.000 13.17 5.88 37.50 2.94
317 318 0.421904 ATGGTAGAACCCAGGGTCCT 59.578 55.000 13.17 7.26 37.50 3.85
318 319 0.837940 GATGGTAGAACCCAGGGTCC 59.162 60.000 13.17 9.60 37.50 4.46
319 320 1.580059 TGATGGTAGAACCCAGGGTC 58.420 55.000 13.17 1.85 37.50 4.46
320 321 1.846439 CATGATGGTAGAACCCAGGGT 59.154 52.381 4.76 4.76 37.50 4.34
321 322 2.126882 TCATGATGGTAGAACCCAGGG 58.873 52.381 2.85 2.85 37.50 4.45
322 323 2.505407 TGTCATGATGGTAGAACCCAGG 59.495 50.000 0.00 0.00 37.50 4.45
323 324 3.912496 TGTCATGATGGTAGAACCCAG 57.088 47.619 0.00 0.00 37.50 4.45
324 325 4.860802 ATTGTCATGATGGTAGAACCCA 57.139 40.909 0.00 0.00 37.50 4.51
325 326 7.639113 TTTAATTGTCATGATGGTAGAACCC 57.361 36.000 0.00 0.00 37.50 4.11
339 340 9.650539 CCACATGGACATTTTATTTAATTGTCA 57.349 29.630 8.97 0.00 43.77 3.58
340 341 9.651913 ACCACATGGACATTTTATTTAATTGTC 57.348 29.630 4.53 0.00 42.38 3.18
347 348 8.970859 TTTTGAACCACATGGACATTTTATTT 57.029 26.923 4.53 0.00 38.94 1.40
348 349 8.835439 GTTTTTGAACCACATGGACATTTTATT 58.165 29.630 4.53 0.00 38.94 1.40
349 350 7.989741 TGTTTTTGAACCACATGGACATTTTAT 59.010 29.630 4.53 0.00 38.94 1.40
350 351 7.331026 TGTTTTTGAACCACATGGACATTTTA 58.669 30.769 4.53 0.00 38.94 1.52
351 352 6.176183 TGTTTTTGAACCACATGGACATTTT 58.824 32.000 4.53 0.00 38.94 1.82
352 353 5.738909 TGTTTTTGAACCACATGGACATTT 58.261 33.333 4.53 0.00 38.94 2.32
353 354 5.350504 TGTTTTTGAACCACATGGACATT 57.649 34.783 4.53 0.00 38.94 2.71
354 355 5.549742 ATGTTTTTGAACCACATGGACAT 57.450 34.783 4.53 0.00 38.94 3.06
355 356 6.295011 GGATATGTTTTTGAACCACATGGACA 60.295 38.462 4.53 1.85 38.94 4.02
356 357 6.099341 GGATATGTTTTTGAACCACATGGAC 58.901 40.000 4.53 0.00 38.94 4.02
357 358 5.105957 CGGATATGTTTTTGAACCACATGGA 60.106 40.000 4.53 0.00 38.94 3.41
358 359 5.101628 CGGATATGTTTTTGAACCACATGG 58.898 41.667 0.00 0.00 42.17 3.66
359 360 5.572511 CACGGATATGTTTTTGAACCACATG 59.427 40.000 0.00 0.00 33.19 3.21
360 361 5.336372 CCACGGATATGTTTTTGAACCACAT 60.336 40.000 0.00 0.00 35.33 3.21
361 362 4.022762 CCACGGATATGTTTTTGAACCACA 60.023 41.667 0.00 0.00 0.00 4.17
362 363 4.481463 CCACGGATATGTTTTTGAACCAC 58.519 43.478 0.00 0.00 0.00 4.16
363 364 3.057174 GCCACGGATATGTTTTTGAACCA 60.057 43.478 0.00 0.00 0.00 3.67
364 365 3.192633 AGCCACGGATATGTTTTTGAACC 59.807 43.478 0.00 0.00 0.00 3.62
365 366 4.434713 AGCCACGGATATGTTTTTGAAC 57.565 40.909 0.00 0.00 0.00 3.18
366 367 5.461032 AAAGCCACGGATATGTTTTTGAA 57.539 34.783 0.00 0.00 0.00 2.69
367 368 5.461032 AAAAGCCACGGATATGTTTTTGA 57.539 34.783 0.00 0.00 0.00 2.69
368 369 6.090223 GGTAAAAAGCCACGGATATGTTTTTG 59.910 38.462 0.00 0.00 31.45 2.44
369 370 6.160684 GGTAAAAAGCCACGGATATGTTTTT 58.839 36.000 0.00 0.00 33.11 1.94
370 371 5.244178 TGGTAAAAAGCCACGGATATGTTTT 59.756 36.000 0.00 0.00 0.00 2.43
371 372 4.767928 TGGTAAAAAGCCACGGATATGTTT 59.232 37.500 0.00 0.00 0.00 2.83
372 373 4.337145 TGGTAAAAAGCCACGGATATGTT 58.663 39.130 0.00 0.00 0.00 2.71
373 374 3.958018 TGGTAAAAAGCCACGGATATGT 58.042 40.909 0.00 0.00 0.00 2.29
374 375 4.974368 TTGGTAAAAAGCCACGGATATG 57.026 40.909 0.00 0.00 35.46 1.78
375 376 5.420739 ACATTTGGTAAAAAGCCACGGATAT 59.579 36.000 0.00 0.00 35.46 1.63
376 377 4.767928 ACATTTGGTAAAAAGCCACGGATA 59.232 37.500 0.00 0.00 35.46 2.59
377 378 3.576550 ACATTTGGTAAAAAGCCACGGAT 59.423 39.130 0.00 0.00 35.46 4.18
378 379 2.959707 ACATTTGGTAAAAAGCCACGGA 59.040 40.909 0.00 0.00 35.46 4.69
379 380 3.378911 ACATTTGGTAAAAAGCCACGG 57.621 42.857 0.00 0.00 35.46 4.94
380 381 7.595502 TGTATAAACATTTGGTAAAAAGCCACG 59.404 33.333 0.00 0.00 35.46 4.94
381 382 8.819643 TGTATAAACATTTGGTAAAAAGCCAC 57.180 30.769 0.00 0.00 35.46 5.01
420 421 9.968870 GTTGTACAACTTTTTAAATGGTATGGA 57.031 29.630 27.69 0.00 38.25 3.41
421 422 8.907685 CGTTGTACAACTTTTTAAATGGTATGG 58.092 33.333 30.47 9.80 39.08 2.74
422 423 9.453325 ACGTTGTACAACTTTTTAAATGGTATG 57.547 29.630 30.47 14.84 39.08 2.39
423 424 9.453325 CACGTTGTACAACTTTTTAAATGGTAT 57.547 29.630 30.47 0.10 39.08 2.73
424 425 8.457261 ACACGTTGTACAACTTTTTAAATGGTA 58.543 29.630 30.47 0.00 39.08 3.25
425 426 7.314393 ACACGTTGTACAACTTTTTAAATGGT 58.686 30.769 30.47 16.91 39.08 3.55
426 427 7.743520 ACACGTTGTACAACTTTTTAAATGG 57.256 32.000 30.47 16.35 39.08 3.16
432 433 8.967552 TTCAAATACACGTTGTACAACTTTTT 57.032 26.923 30.47 18.31 35.42 1.94
433 434 8.967552 TTTCAAATACACGTTGTACAACTTTT 57.032 26.923 30.47 19.85 35.42 2.27
434 435 8.967552 TTTTCAAATACACGTTGTACAACTTT 57.032 26.923 30.47 21.81 35.42 2.66
435 436 8.967552 TTTTTCAAATACACGTTGTACAACTT 57.032 26.923 30.47 22.00 35.42 2.66
436 437 9.015577 CATTTTTCAAATACACGTTGTACAACT 57.984 29.630 30.47 17.98 35.42 3.16
437 438 8.800031 ACATTTTTCAAATACACGTTGTACAAC 58.200 29.630 25.73 25.73 35.42 3.32
438 439 8.912787 ACATTTTTCAAATACACGTTGTACAA 57.087 26.923 3.59 3.59 35.42 2.41
439 440 8.912787 AACATTTTTCAAATACACGTTGTACA 57.087 26.923 0.00 0.00 35.42 2.90
454 455 9.658799 TCCTGTTTTCATGTTAAACATTTTTCA 57.341 25.926 20.85 5.39 42.63 2.69
467 468 9.829507 TGTTTGATTATTTTCCTGTTTTCATGT 57.170 25.926 0.00 0.00 0.00 3.21
470 471 9.829507 ACATGTTTGATTATTTTCCTGTTTTCA 57.170 25.926 0.00 0.00 0.00 2.69
530 531 9.797556 GTTGTACATCTTCTGTATACATGTGTA 57.202 33.333 15.95 2.80 42.21 2.90
531 532 7.488150 CGTTGTACATCTTCTGTATACATGTGT 59.512 37.037 15.95 4.04 42.21 3.72
532 533 7.488150 ACGTTGTACATCTTCTGTATACATGTG 59.512 37.037 15.95 9.30 42.21 3.21
533 534 7.488150 CACGTTGTACATCTTCTGTATACATGT 59.512 37.037 5.91 9.88 42.21 3.21
534 535 7.488150 ACACGTTGTACATCTTCTGTATACATG 59.512 37.037 5.91 3.96 42.21 3.21
535 536 7.544622 ACACGTTGTACATCTTCTGTATACAT 58.455 34.615 5.91 0.00 42.21 2.29
536 537 6.916440 ACACGTTGTACATCTTCTGTATACA 58.084 36.000 5.25 5.25 42.21 2.29
537 538 9.512435 AATACACGTTGTACATCTTCTGTATAC 57.488 33.333 0.00 0.00 42.21 1.47
538 539 9.511144 CAATACACGTTGTACATCTTCTGTATA 57.489 33.333 0.00 0.00 42.21 1.47
539 540 8.248253 TCAATACACGTTGTACATCTTCTGTAT 58.752 33.333 0.00 5.00 42.21 2.29
540 541 7.595604 TCAATACACGTTGTACATCTTCTGTA 58.404 34.615 0.00 2.95 39.39 2.74
541 542 6.452242 TCAATACACGTTGTACATCTTCTGT 58.548 36.000 0.00 0.81 42.13 3.41
542 543 6.944557 TCAATACACGTTGTACATCTTCTG 57.055 37.500 0.00 0.00 35.42 3.02
543 544 7.870954 TCTTTCAATACACGTTGTACATCTTCT 59.129 33.333 0.00 0.00 35.42 2.85
544 545 8.014322 TCTTTCAATACACGTTGTACATCTTC 57.986 34.615 0.00 0.00 35.42 2.87
545 546 7.956420 TCTTTCAATACACGTTGTACATCTT 57.044 32.000 0.00 0.00 35.42 2.40
546 547 7.656137 ACTTCTTTCAATACACGTTGTACATCT 59.344 33.333 0.00 0.00 35.42 2.90
547 548 7.793902 ACTTCTTTCAATACACGTTGTACATC 58.206 34.615 0.00 0.00 35.42 3.06
548 549 7.358931 CGACTTCTTTCAATACACGTTGTACAT 60.359 37.037 0.00 0.00 35.42 2.29
549 550 6.074729 CGACTTCTTTCAATACACGTTGTACA 60.075 38.462 0.00 0.00 35.42 2.90
550 551 6.286941 CGACTTCTTTCAATACACGTTGTAC 58.713 40.000 0.00 0.00 35.42 2.90
551 552 5.403166 CCGACTTCTTTCAATACACGTTGTA 59.597 40.000 0.00 0.00 37.24 2.41
552 553 4.210537 CCGACTTCTTTCAATACACGTTGT 59.789 41.667 0.00 0.00 0.00 3.32
553 554 4.698276 CCGACTTCTTTCAATACACGTTG 58.302 43.478 0.00 0.00 0.00 4.10
554 555 3.185797 GCCGACTTCTTTCAATACACGTT 59.814 43.478 0.00 0.00 0.00 3.99
555 556 2.735134 GCCGACTTCTTTCAATACACGT 59.265 45.455 0.00 0.00 0.00 4.49
556 557 2.734606 TGCCGACTTCTTTCAATACACG 59.265 45.455 0.00 0.00 0.00 4.49
557 558 4.154195 ACATGCCGACTTCTTTCAATACAC 59.846 41.667 0.00 0.00 0.00 2.90
558 559 4.323417 ACATGCCGACTTCTTTCAATACA 58.677 39.130 0.00 0.00 0.00 2.29
559 560 4.946784 ACATGCCGACTTCTTTCAATAC 57.053 40.909 0.00 0.00 0.00 1.89
560 561 7.335673 TCAAATACATGCCGACTTCTTTCAATA 59.664 33.333 0.00 0.00 0.00 1.90
561 562 6.150976 TCAAATACATGCCGACTTCTTTCAAT 59.849 34.615 0.00 0.00 0.00 2.57
562 563 5.471797 TCAAATACATGCCGACTTCTTTCAA 59.528 36.000 0.00 0.00 0.00 2.69
563 564 5.000591 TCAAATACATGCCGACTTCTTTCA 58.999 37.500 0.00 0.00 0.00 2.69
564 565 5.545658 TCAAATACATGCCGACTTCTTTC 57.454 39.130 0.00 0.00 0.00 2.62
565 566 5.957842 TTCAAATACATGCCGACTTCTTT 57.042 34.783 0.00 0.00 0.00 2.52
566 567 5.705441 TCTTTCAAATACATGCCGACTTCTT 59.295 36.000 0.00 0.00 0.00 2.52
567 568 5.122396 GTCTTTCAAATACATGCCGACTTCT 59.878 40.000 0.00 0.00 0.00 2.85
568 569 5.106712 TGTCTTTCAAATACATGCCGACTTC 60.107 40.000 0.00 0.00 0.00 3.01
569 570 4.759693 TGTCTTTCAAATACATGCCGACTT 59.240 37.500 0.00 0.00 0.00 3.01
570 571 4.323417 TGTCTTTCAAATACATGCCGACT 58.677 39.130 0.00 0.00 0.00 4.18
571 572 4.678509 TGTCTTTCAAATACATGCCGAC 57.321 40.909 0.00 0.00 0.00 4.79
572 573 5.009110 TGTTTGTCTTTCAAATACATGCCGA 59.991 36.000 0.00 0.00 45.88 5.54
573 574 5.218885 TGTTTGTCTTTCAAATACATGCCG 58.781 37.500 0.00 0.00 45.88 5.69
613 614 8.892723 GTTCTCATCAATTTTCTTTGGGTTTTT 58.107 29.630 0.00 0.00 0.00 1.94
614 615 8.046107 TGTTCTCATCAATTTTCTTTGGGTTTT 58.954 29.630 0.00 0.00 0.00 2.43
615 616 7.563906 TGTTCTCATCAATTTTCTTTGGGTTT 58.436 30.769 0.00 0.00 0.00 3.27
616 617 7.123355 TGTTCTCATCAATTTTCTTTGGGTT 57.877 32.000 0.00 0.00 0.00 4.11
617 618 6.729690 TGTTCTCATCAATTTTCTTTGGGT 57.270 33.333 0.00 0.00 0.00 4.51
618 619 9.709495 TTATTGTTCTCATCAATTTTCTTTGGG 57.291 29.630 0.00 0.00 36.92 4.12
628 629 9.683069 GTGTGTCTTTTTATTGTTCTCATCAAT 57.317 29.630 0.00 0.00 38.72 2.57
629 630 8.681806 TGTGTGTCTTTTTATTGTTCTCATCAA 58.318 29.630 0.00 0.00 0.00 2.57
630 631 8.219546 TGTGTGTCTTTTTATTGTTCTCATCA 57.780 30.769 0.00 0.00 0.00 3.07
633 634 9.554395 TCTATGTGTGTCTTTTTATTGTTCTCA 57.446 29.630 0.00 0.00 0.00 3.27
643 644 9.561069 ACACTATCTTTCTATGTGTGTCTTTTT 57.439 29.630 0.00 0.00 39.90 1.94
644 645 9.209175 GACACTATCTTTCTATGTGTGTCTTTT 57.791 33.333 13.80 0.00 45.12 2.27
645 646 8.764524 GACACTATCTTTCTATGTGTGTCTTT 57.235 34.615 13.80 0.00 45.12 2.52
661 662 5.941146 ATAGGGGAGAGAAGACACTATCT 57.059 43.478 0.00 0.00 40.46 1.98
662 663 6.987403 AAATAGGGGAGAGAAGACACTATC 57.013 41.667 0.00 0.00 0.00 2.08
663 664 8.855804 TTTAAATAGGGGAGAGAAGACACTAT 57.144 34.615 0.00 0.00 0.00 2.12
664 665 8.674925 TTTTAAATAGGGGAGAGAAGACACTA 57.325 34.615 0.00 0.00 0.00 2.74
665 666 7.458170 TCTTTTAAATAGGGGAGAGAAGACACT 59.542 37.037 0.00 0.00 0.00 3.55
666 667 7.621796 TCTTTTAAATAGGGGAGAGAAGACAC 58.378 38.462 0.00 0.00 0.00 3.67
667 668 7.808279 TCTTTTAAATAGGGGAGAGAAGACA 57.192 36.000 0.00 0.00 0.00 3.41
713 714 9.453572 TGAGCAAAATGAGAACTTACATATCTT 57.546 29.630 0.00 0.00 0.00 2.40
714 715 9.624373 ATGAGCAAAATGAGAACTTACATATCT 57.376 29.630 0.00 0.00 0.00 1.98
715 716 9.875675 GATGAGCAAAATGAGAACTTACATATC 57.124 33.333 0.00 0.00 0.00 1.63
716 717 9.624373 AGATGAGCAAAATGAGAACTTACATAT 57.376 29.630 0.00 0.00 0.00 1.78
717 718 9.453572 AAGATGAGCAAAATGAGAACTTACATA 57.546 29.630 0.00 0.00 0.00 2.29
718 719 7.934855 AGATGAGCAAAATGAGAACTTACAT 57.065 32.000 0.00 0.00 0.00 2.29
719 720 7.750229 AAGATGAGCAAAATGAGAACTTACA 57.250 32.000 0.00 0.00 0.00 2.41
720 721 8.909671 CAAAAGATGAGCAAAATGAGAACTTAC 58.090 33.333 0.00 0.00 0.00 2.34
721 722 8.632679 ACAAAAGATGAGCAAAATGAGAACTTA 58.367 29.630 0.00 0.00 0.00 2.24
722 723 7.495055 ACAAAAGATGAGCAAAATGAGAACTT 58.505 30.769 0.00 0.00 0.00 2.66
723 724 7.047460 ACAAAAGATGAGCAAAATGAGAACT 57.953 32.000 0.00 0.00 0.00 3.01
724 725 6.919662 TGACAAAAGATGAGCAAAATGAGAAC 59.080 34.615 0.00 0.00 0.00 3.01
725 726 7.041635 TGACAAAAGATGAGCAAAATGAGAA 57.958 32.000 0.00 0.00 0.00 2.87
726 727 6.638096 TGACAAAAGATGAGCAAAATGAGA 57.362 33.333 0.00 0.00 0.00 3.27
727 728 6.145048 GGTTGACAAAAGATGAGCAAAATGAG 59.855 38.462 0.00 0.00 32.01 2.90
728 729 5.984926 GGTTGACAAAAGATGAGCAAAATGA 59.015 36.000 0.00 0.00 32.01 2.57
729 730 5.178067 GGGTTGACAAAAGATGAGCAAAATG 59.822 40.000 0.00 0.00 32.01 2.32
730 731 5.299949 GGGTTGACAAAAGATGAGCAAAAT 58.700 37.500 0.00 0.00 32.01 1.82
731 732 4.442753 GGGGTTGACAAAAGATGAGCAAAA 60.443 41.667 0.00 0.00 32.01 2.44
732 733 3.069443 GGGGTTGACAAAAGATGAGCAAA 59.931 43.478 0.00 0.00 32.01 3.68
733 734 2.627699 GGGGTTGACAAAAGATGAGCAA 59.372 45.455 0.00 0.00 0.00 3.91
734 735 2.158475 AGGGGTTGACAAAAGATGAGCA 60.158 45.455 0.00 0.00 0.00 4.26
735 736 2.489722 GAGGGGTTGACAAAAGATGAGC 59.510 50.000 0.00 0.00 0.00 4.26
736 737 4.026356 AGAGGGGTTGACAAAAGATGAG 57.974 45.455 0.00 0.00 0.00 2.90
737 738 5.500234 CATAGAGGGGTTGACAAAAGATGA 58.500 41.667 0.00 0.00 0.00 2.92
738 739 4.096984 GCATAGAGGGGTTGACAAAAGATG 59.903 45.833 0.00 0.00 0.00 2.90
739 740 4.273318 GCATAGAGGGGTTGACAAAAGAT 58.727 43.478 0.00 0.00 0.00 2.40
740 741 3.561313 GGCATAGAGGGGTTGACAAAAGA 60.561 47.826 0.00 0.00 0.00 2.52
741 742 2.755103 GGCATAGAGGGGTTGACAAAAG 59.245 50.000 0.00 0.00 0.00 2.27
742 743 2.109128 TGGCATAGAGGGGTTGACAAAA 59.891 45.455 0.00 0.00 0.00 2.44
743 744 1.707989 TGGCATAGAGGGGTTGACAAA 59.292 47.619 0.00 0.00 0.00 2.83
744 745 1.367346 TGGCATAGAGGGGTTGACAA 58.633 50.000 0.00 0.00 0.00 3.18
745 746 1.367346 TTGGCATAGAGGGGTTGACA 58.633 50.000 0.00 0.00 0.00 3.58
746 747 2.301346 CATTGGCATAGAGGGGTTGAC 58.699 52.381 0.00 0.00 0.00 3.18
747 748 1.215173 CCATTGGCATAGAGGGGTTGA 59.785 52.381 0.00 0.00 0.00 3.18
748 749 1.696063 CCATTGGCATAGAGGGGTTG 58.304 55.000 0.00 0.00 0.00 3.77
749 750 0.557729 CCCATTGGCATAGAGGGGTT 59.442 55.000 0.00 0.00 35.83 4.11
750 751 2.244487 CCCATTGGCATAGAGGGGT 58.756 57.895 0.00 0.00 35.83 4.95
752 753 0.852842 TTCCCCATTGGCATAGAGGG 59.147 55.000 0.00 6.15 39.29 4.30
753 754 2.754012 TTTCCCCATTGGCATAGAGG 57.246 50.000 0.00 0.00 0.00 3.69
754 755 6.729690 TTTATTTTCCCCATTGGCATAGAG 57.270 37.500 0.00 0.00 0.00 2.43
755 756 7.688918 ATTTTATTTTCCCCATTGGCATAGA 57.311 32.000 0.00 0.00 0.00 1.98
756 757 9.844257 TTTATTTTATTTTCCCCATTGGCATAG 57.156 29.630 0.00 0.00 0.00 2.23
758 759 9.712250 AATTTATTTTATTTTCCCCATTGGCAT 57.288 25.926 0.00 0.00 0.00 4.40
765 766 9.680315 CGCGTATAATTTATTTTATTTTCCCCA 57.320 29.630 0.00 0.00 0.00 4.96
766 767 9.131416 CCGCGTATAATTTATTTTATTTTCCCC 57.869 33.333 4.92 0.00 0.00 4.81
767 768 9.896263 TCCGCGTATAATTTATTTTATTTTCCC 57.104 29.630 4.92 0.00 0.00 3.97
779 780 8.893884 CGCATTAATTTTTCCGCGTATAATTTA 58.106 29.630 4.92 1.04 38.03 1.40
780 781 7.566148 GCGCATTAATTTTTCCGCGTATAATTT 60.566 33.333 14.57 0.00 44.25 1.82
781 782 6.129300 GCGCATTAATTTTTCCGCGTATAATT 60.129 34.615 14.57 8.47 44.25 1.40
782 783 5.341196 GCGCATTAATTTTTCCGCGTATAAT 59.659 36.000 14.57 0.00 44.25 1.28
783 784 4.671516 GCGCATTAATTTTTCCGCGTATAA 59.328 37.500 14.57 0.00 44.25 0.98
784 785 4.212911 GCGCATTAATTTTTCCGCGTATA 58.787 39.130 14.57 0.00 44.25 1.47
785 786 3.040099 GCGCATTAATTTTTCCGCGTAT 58.960 40.909 14.57 0.00 44.25 3.06
786 787 2.159558 TGCGCATTAATTTTTCCGCGTA 60.160 40.909 5.66 9.15 44.25 4.42
787 788 1.264672 GCGCATTAATTTTTCCGCGT 58.735 45.000 14.57 0.00 44.25 6.01
788 789 1.263776 TGCGCATTAATTTTTCCGCG 58.736 45.000 5.66 10.30 43.82 6.46
789 790 2.218530 GGATGCGCATTAATTTTTCCGC 59.781 45.455 26.12 6.55 41.55 5.54
790 791 2.794350 GGGATGCGCATTAATTTTTCCG 59.206 45.455 26.12 0.00 0.00 4.30
791 792 3.130633 GGGGATGCGCATTAATTTTTCC 58.869 45.455 26.12 18.68 0.00 3.13
792 793 4.051237 GAGGGGATGCGCATTAATTTTTC 58.949 43.478 26.12 9.75 0.00 2.29
793 794 3.490761 CGAGGGGATGCGCATTAATTTTT 60.491 43.478 26.12 6.84 0.00 1.94
794 795 2.034558 CGAGGGGATGCGCATTAATTTT 59.965 45.455 26.12 8.50 0.00 1.82
795 796 1.608590 CGAGGGGATGCGCATTAATTT 59.391 47.619 26.12 9.62 0.00 1.82
796 797 1.202758 TCGAGGGGATGCGCATTAATT 60.203 47.619 26.12 11.13 0.00 1.40
797 798 0.396435 TCGAGGGGATGCGCATTAAT 59.604 50.000 26.12 11.14 0.00 1.40
798 799 0.531974 GTCGAGGGGATGCGCATTAA 60.532 55.000 26.12 0.00 0.00 1.40
799 800 1.069090 GTCGAGGGGATGCGCATTA 59.931 57.895 26.12 0.00 0.00 1.90
800 801 2.203070 GTCGAGGGGATGCGCATT 60.203 61.111 26.12 8.43 0.00 3.56
801 802 4.241555 GGTCGAGGGGATGCGCAT 62.242 66.667 25.66 25.66 0.00 4.73
806 807 4.873129 CGTGCGGTCGAGGGGATG 62.873 72.222 0.00 0.00 0.00 3.51
809 810 4.143333 AATCGTGCGGTCGAGGGG 62.143 66.667 0.00 0.00 43.00 4.79
810 811 2.885644 CAATCGTGCGGTCGAGGG 60.886 66.667 0.00 0.00 43.00 4.30
815 816 3.719214 GATCCCAATCGTGCGGTC 58.281 61.111 0.00 0.00 0.00 4.79
851 852 0.458543 CTCGTCTTATGGCGTGCTGT 60.459 55.000 2.35 0.00 0.00 4.40
852 853 1.756375 GCTCGTCTTATGGCGTGCTG 61.756 60.000 18.68 3.78 42.11 4.41
885 886 4.657436 ACGCGAGATCCTATTTCTTTCT 57.343 40.909 15.93 0.00 0.00 2.52
886 887 6.089685 GGATAACGCGAGATCCTATTTCTTTC 59.910 42.308 26.36 6.05 38.91 2.62
887 888 5.927115 GGATAACGCGAGATCCTATTTCTTT 59.073 40.000 26.36 5.63 38.91 2.52
888 889 5.471257 GGATAACGCGAGATCCTATTTCTT 58.529 41.667 26.36 6.01 38.91 2.52
916 917 3.192633 ACGTGGCATGGTTTAGGATTTTC 59.807 43.478 12.05 0.00 0.00 2.29
1006 1007 3.372554 GAAAGACGGCGAGGGAGGG 62.373 68.421 16.62 0.00 0.00 4.30
1338 1354 1.807573 GTCGAGGCGCTTCTCCTTG 60.808 63.158 18.01 4.76 36.61 3.61
1437 1453 2.048127 GAGTTCTTCACCGCGCCT 60.048 61.111 0.00 0.00 0.00 5.52
1482 1498 3.838271 GCCTCCATGTCCGCGAGA 61.838 66.667 8.23 0.00 0.00 4.04
1551 1567 2.357517 ACCTTGCCTTGCTCGACG 60.358 61.111 0.00 0.00 0.00 5.12
1567 1583 1.186267 ACCCTGAACACCTCCTCGAC 61.186 60.000 0.00 0.00 0.00 4.20
1578 1594 0.311790 TGTCGTCGTACACCCTGAAC 59.688 55.000 0.00 0.00 0.00 3.18
1653 1669 3.766691 TCCCCGGCGCTCTTGTAC 61.767 66.667 7.64 0.00 0.00 2.90
1689 1705 1.902508 TCCCTGAGCTTGACGAAGAAT 59.097 47.619 0.00 0.00 0.00 2.40
2105 2121 0.517316 GTGTGACAGATTGTTCGGCC 59.483 55.000 0.00 0.00 0.00 6.13
2139 2155 1.466167 CTGAGCAGGACGTTGAAATGG 59.534 52.381 0.00 0.00 0.00 3.16
2307 2323 4.262808 CCCCGCTCTATCATCTTCTTGAAT 60.263 45.833 0.00 0.00 0.00 2.57
2340 2356 2.789842 TCCATAGGAGACCACGTCG 58.210 57.895 0.00 0.00 37.67 5.12
2412 2428 3.332493 CTTGCGCATGTGCTCCCAC 62.332 63.158 29.79 2.62 42.40 4.61
2637 2653 1.079750 GACCTCACTCGGCTCAACC 60.080 63.158 0.00 0.00 0.00 3.77
2703 2719 4.635223 TGATGTACATCTCATAGGCAAGC 58.365 43.478 30.67 6.43 38.60 4.01
2804 2820 3.766591 ACCCAGACTAGTGAGATCAACAG 59.233 47.826 0.00 0.00 0.00 3.16
2819 2835 1.700955 TATAGGCCGAAGACCCAGAC 58.299 55.000 0.00 0.00 0.00 3.51
2866 2883 7.679659 ACACAAGAAGTTCTTTAAAATTCGC 57.320 32.000 15.60 0.00 33.78 4.70
2878 2895 7.739498 TTAATACCCTCAACACAAGAAGTTC 57.261 36.000 0.00 0.00 0.00 3.01
2911 2929 0.319813 ACCGCAAAATGCTTTCTGCC 60.320 50.000 5.17 0.00 42.25 4.85
3060 3085 4.081862 CGGTAGTTCTGTGGAAAGGATACA 60.082 45.833 0.00 0.00 41.41 2.29
3067 3092 2.851263 ATGCGGTAGTTCTGTGGAAA 57.149 45.000 0.00 0.00 32.81 3.13
3069 3094 2.811431 CAAAATGCGGTAGTTCTGTGGA 59.189 45.455 0.00 0.00 0.00 4.02
3083 3108 6.841119 AGTTTTTGGTCAGTTTTCAAAATGC 58.159 32.000 0.00 0.00 39.24 3.56
3150 3175 2.753296 ACGGTTAAATCGGTCGTCAAA 58.247 42.857 4.81 0.00 0.00 2.69
3201 3226 3.998672 GGCAACCGTCCCGACAGA 61.999 66.667 0.00 0.00 0.00 3.41
3322 3354 4.513442 AGCACCGATTAATTTAGCTGACA 58.487 39.130 0.00 0.00 0.00 3.58
3483 3515 2.501128 CCGCATCTGGACGGTGAT 59.499 61.111 0.00 0.00 44.46 3.06
3526 3558 1.115467 GTCTCCCACATCTGACCGAT 58.885 55.000 0.00 0.00 0.00 4.18
3579 3611 2.107141 GCTTCGGCGCATACCTCT 59.893 61.111 10.83 0.00 0.00 3.69
3601 3633 3.005539 ATGGTGCTGGAGGACGCT 61.006 61.111 0.00 0.00 37.24 5.07
3687 3719 2.179267 GCCAAAACCTAGCGCTGC 59.821 61.111 22.90 8.45 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.