Multiple sequence alignment - TraesCS3A01G390300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G390300 chr3A 100.000 2817 0 0 1 2817 638448013 638445197 0.000000e+00 5203.0
1 TraesCS3A01G390300 chr3A 82.054 1042 128 40 937 1935 638711570 638710545 0.000000e+00 833.0
2 TraesCS3A01G390300 chr3A 91.360 544 36 5 1041 1575 638452970 638452429 0.000000e+00 734.0
3 TraesCS3A01G390300 chr3A 79.076 368 46 16 659 1010 638453392 638453040 1.020000e-54 224.0
4 TraesCS3A01G390300 chr3B 90.280 1070 53 23 625 1663 659276444 659275395 0.000000e+00 1352.0
5 TraesCS3A01G390300 chr3B 87.500 888 62 17 1722 2572 659275395 659274520 0.000000e+00 979.0
6 TraesCS3A01G390300 chr3B 82.161 1009 111 39 833 1790 659305646 659304656 0.000000e+00 802.0
7 TraesCS3A01G390300 chr3B 87.204 719 52 23 888 1574 659298282 659297572 0.000000e+00 782.0
8 TraesCS3A01G390300 chr3B 96.903 226 5 1 2594 2817 659274532 659274307 7.370000e-101 377.0
9 TraesCS3A01G390300 chr3B 82.381 210 31 5 655 861 659298487 659298281 8.020000e-41 178.0
10 TraesCS3A01G390300 chr3B 83.206 131 11 8 626 745 659305898 659305768 2.970000e-20 110.0
11 TraesCS3A01G390300 chr3D 85.614 1286 109 38 624 1845 498356741 498355468 0.000000e+00 1280.0
12 TraesCS3A01G390300 chr3D 89.588 970 60 16 628 1573 498396181 498395229 0.000000e+00 1194.0
13 TraesCS3A01G390300 chr3D 86.558 1101 81 30 624 1667 498264971 498263881 0.000000e+00 1151.0
14 TraesCS3A01G390300 chr3D 83.731 1174 113 38 665 1790 498484689 498483546 0.000000e+00 1038.0
15 TraesCS3A01G390300 chr3D 89.496 695 59 7 1795 2478 498263629 498262938 0.000000e+00 867.0
16 TraesCS3A01G390300 chr3D 88.341 669 42 24 916 1574 498423831 498423189 0.000000e+00 771.0
17 TraesCS3A01G390300 chr3D 93.886 229 11 2 2592 2817 498262787 498262559 2.690000e-90 342.0
18 TraesCS3A01G390300 chr3D 80.617 227 37 6 644 866 498424057 498423834 4.830000e-38 169.0
19 TraesCS3A01G390300 chr3D 91.860 86 3 1 1698 1783 498263882 498263801 1.770000e-22 117.0
20 TraesCS3A01G390300 chr4D 86.842 76 9 1 42 117 75793070 75792996 1.800000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G390300 chr3A 638445197 638448013 2816 True 5203.000000 5203 100.0000 1 2817 1 chr3A.!!$R1 2816
1 TraesCS3A01G390300 chr3A 638710545 638711570 1025 True 833.000000 833 82.0540 937 1935 1 chr3A.!!$R2 998
2 TraesCS3A01G390300 chr3A 638452429 638453392 963 True 479.000000 734 85.2180 659 1575 2 chr3A.!!$R3 916
3 TraesCS3A01G390300 chr3B 659274307 659276444 2137 True 902.666667 1352 91.5610 625 2817 3 chr3B.!!$R1 2192
4 TraesCS3A01G390300 chr3B 659297572 659298487 915 True 480.000000 782 84.7925 655 1574 2 chr3B.!!$R2 919
5 TraesCS3A01G390300 chr3B 659304656 659305898 1242 True 456.000000 802 82.6835 626 1790 2 chr3B.!!$R3 1164
6 TraesCS3A01G390300 chr3D 498355468 498356741 1273 True 1280.000000 1280 85.6140 624 1845 1 chr3D.!!$R1 1221
7 TraesCS3A01G390300 chr3D 498395229 498396181 952 True 1194.000000 1194 89.5880 628 1573 1 chr3D.!!$R2 945
8 TraesCS3A01G390300 chr3D 498483546 498484689 1143 True 1038.000000 1038 83.7310 665 1790 1 chr3D.!!$R3 1125
9 TraesCS3A01G390300 chr3D 498262559 498264971 2412 True 619.250000 1151 90.4500 624 2817 4 chr3D.!!$R4 2193
10 TraesCS3A01G390300 chr3D 498423189 498424057 868 True 470.000000 771 84.4790 644 1574 2 chr3D.!!$R5 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 415 0.039618 AATGTTCGCTGGGGGAATGT 59.96 50.0 0.76 0.0 36.9 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 2772 0.097674 GCACTGACGATTGCCATGTC 59.902 55.0 0.0 0.0 32.21 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.755266 TTCTAGGTAGGTCTTCATTGGC 57.245 45.455 0.00 0.00 0.00 4.52
22 23 3.039011 TCTAGGTAGGTCTTCATTGGCC 58.961 50.000 0.00 0.00 0.00 5.36
23 24 1.668826 AGGTAGGTCTTCATTGGCCA 58.331 50.000 0.00 0.00 0.00 5.36
24 25 2.208872 AGGTAGGTCTTCATTGGCCAT 58.791 47.619 6.09 0.00 0.00 4.40
25 26 3.393687 AGGTAGGTCTTCATTGGCCATA 58.606 45.455 6.09 0.00 0.00 2.74
26 27 3.392616 AGGTAGGTCTTCATTGGCCATAG 59.607 47.826 6.09 1.55 0.00 2.23
27 28 2.355010 AGGTCTTCATTGGCCATAGC 57.645 50.000 6.09 0.00 38.76 2.97
37 38 4.760757 GCCATAGCCTCGGTCTTC 57.239 61.111 0.00 0.00 0.00 2.87
38 39 1.823295 GCCATAGCCTCGGTCTTCA 59.177 57.895 0.00 0.00 0.00 3.02
39 40 0.394565 GCCATAGCCTCGGTCTTCAT 59.605 55.000 0.00 0.00 0.00 2.57
40 41 1.606737 GCCATAGCCTCGGTCTTCATC 60.607 57.143 0.00 0.00 0.00 2.92
41 42 1.336332 CCATAGCCTCGGTCTTCATCG 60.336 57.143 0.00 0.00 0.00 3.84
42 43 1.609072 CATAGCCTCGGTCTTCATCGA 59.391 52.381 0.00 0.00 0.00 3.59
43 44 1.758936 TAGCCTCGGTCTTCATCGAA 58.241 50.000 0.00 0.00 34.87 3.71
44 45 1.115467 AGCCTCGGTCTTCATCGAAT 58.885 50.000 0.00 0.00 34.87 3.34
45 46 1.067821 AGCCTCGGTCTTCATCGAATC 59.932 52.381 0.00 0.00 34.87 2.52
46 47 1.202417 GCCTCGGTCTTCATCGAATCA 60.202 52.381 0.00 0.00 34.87 2.57
47 48 2.738643 GCCTCGGTCTTCATCGAATCAA 60.739 50.000 0.00 0.00 34.87 2.57
48 49 3.521560 CCTCGGTCTTCATCGAATCAAA 58.478 45.455 0.00 0.00 34.87 2.69
49 50 4.122776 CCTCGGTCTTCATCGAATCAAAT 58.877 43.478 0.00 0.00 34.87 2.32
50 51 4.572389 CCTCGGTCTTCATCGAATCAAATT 59.428 41.667 0.00 0.00 34.87 1.82
51 52 5.469373 TCGGTCTTCATCGAATCAAATTG 57.531 39.130 0.00 0.00 32.11 2.32
52 53 5.175127 TCGGTCTTCATCGAATCAAATTGA 58.825 37.500 0.00 0.00 32.11 2.57
53 54 5.291858 TCGGTCTTCATCGAATCAAATTGAG 59.708 40.000 1.10 0.00 32.11 3.02
54 55 5.269313 GGTCTTCATCGAATCAAATTGAGC 58.731 41.667 1.10 0.00 0.00 4.26
55 56 5.065731 GGTCTTCATCGAATCAAATTGAGCT 59.934 40.000 1.10 0.00 0.00 4.09
56 57 6.258727 GGTCTTCATCGAATCAAATTGAGCTA 59.741 38.462 1.10 0.00 0.00 3.32
57 58 7.041508 GGTCTTCATCGAATCAAATTGAGCTAT 60.042 37.037 1.10 0.00 0.00 2.97
58 59 8.008844 GTCTTCATCGAATCAAATTGAGCTATC 58.991 37.037 1.10 0.00 0.00 2.08
59 60 6.457851 TCATCGAATCAAATTGAGCTATCG 57.542 37.500 13.36 13.36 0.00 2.92
60 61 6.215845 TCATCGAATCAAATTGAGCTATCGA 58.784 36.000 19.94 19.94 36.44 3.59
61 62 6.870439 TCATCGAATCAAATTGAGCTATCGAT 59.130 34.615 21.65 21.65 39.79 3.59
62 63 6.457851 TCGAATCAAATTGAGCTATCGATG 57.542 37.500 8.54 0.00 31.33 3.84
63 64 5.985530 TCGAATCAAATTGAGCTATCGATGT 59.014 36.000 8.54 0.00 31.33 3.06
64 65 6.479990 TCGAATCAAATTGAGCTATCGATGTT 59.520 34.615 8.54 0.00 31.33 2.71
65 66 6.789403 CGAATCAAATTGAGCTATCGATGTTC 59.211 38.462 8.54 6.47 29.38 3.18
66 67 7.517259 CGAATCAAATTGAGCTATCGATGTTCA 60.517 37.037 8.54 8.97 29.38 3.18
67 68 6.983474 TCAAATTGAGCTATCGATGTTCAA 57.017 33.333 20.38 20.38 38.57 2.69
68 69 7.376435 TCAAATTGAGCTATCGATGTTCAAA 57.624 32.000 21.27 8.42 37.95 2.69
69 70 7.988737 TCAAATTGAGCTATCGATGTTCAAAT 58.011 30.769 21.27 14.95 37.95 2.32
70 71 8.461222 TCAAATTGAGCTATCGATGTTCAAATT 58.539 29.630 21.27 18.17 37.95 1.82
71 72 9.079833 CAAATTGAGCTATCGATGTTCAAATTT 57.920 29.630 21.27 17.17 37.95 1.82
72 73 8.624701 AATTGAGCTATCGATGTTCAAATTTG 57.375 30.769 21.27 12.15 37.95 2.32
73 74 6.741992 TGAGCTATCGATGTTCAAATTTGT 57.258 33.333 17.47 0.00 0.00 2.83
74 75 6.545508 TGAGCTATCGATGTTCAAATTTGTG 58.454 36.000 17.47 0.00 0.00 3.33
75 76 6.149308 TGAGCTATCGATGTTCAAATTTGTGT 59.851 34.615 17.47 3.05 0.00 3.72
76 77 6.317088 AGCTATCGATGTTCAAATTTGTGTG 58.683 36.000 17.47 4.18 0.00 3.82
77 78 6.149308 AGCTATCGATGTTCAAATTTGTGTGA 59.851 34.615 17.47 8.83 0.00 3.58
78 79 6.801377 GCTATCGATGTTCAAATTTGTGTGAA 59.199 34.615 17.47 2.18 0.00 3.18
79 80 7.485913 GCTATCGATGTTCAAATTTGTGTGAAT 59.514 33.333 17.47 6.26 36.23 2.57
80 81 9.345517 CTATCGATGTTCAAATTTGTGTGAATT 57.654 29.630 17.47 2.00 36.23 2.17
81 82 8.592105 ATCGATGTTCAAATTTGTGTGAATTT 57.408 26.923 17.47 0.00 39.21 1.82
82 83 8.417780 TCGATGTTCAAATTTGTGTGAATTTT 57.582 26.923 17.47 0.00 37.17 1.82
83 84 8.877779 TCGATGTTCAAATTTGTGTGAATTTTT 58.122 25.926 17.47 0.00 37.17 1.94
107 108 8.706322 TTTTTAGGGAGCTAAATTTGAGAGTT 57.294 30.769 0.00 0.00 0.00 3.01
108 109 9.802039 TTTTTAGGGAGCTAAATTTGAGAGTTA 57.198 29.630 0.00 0.00 0.00 2.24
109 110 9.802039 TTTTAGGGAGCTAAATTTGAGAGTTAA 57.198 29.630 0.00 0.00 0.00 2.01
110 111 9.449719 TTTAGGGAGCTAAATTTGAGAGTTAAG 57.550 33.333 0.00 0.00 0.00 1.85
111 112 5.883115 AGGGAGCTAAATTTGAGAGTTAAGC 59.117 40.000 0.00 0.00 0.00 3.09
112 113 5.883115 GGGAGCTAAATTTGAGAGTTAAGCT 59.117 40.000 7.40 7.40 30.57 3.74
113 114 7.048512 GGGAGCTAAATTTGAGAGTTAAGCTA 58.951 38.462 7.61 0.00 29.19 3.32
114 115 7.225734 GGGAGCTAAATTTGAGAGTTAAGCTAG 59.774 40.741 7.61 0.00 29.19 3.42
115 116 7.225734 GGAGCTAAATTTGAGAGTTAAGCTAGG 59.774 40.741 7.61 0.00 29.19 3.02
116 117 7.852263 AGCTAAATTTGAGAGTTAAGCTAGGA 58.148 34.615 6.13 0.00 0.00 2.94
117 118 7.984617 AGCTAAATTTGAGAGTTAAGCTAGGAG 59.015 37.037 6.13 0.00 0.00 3.69
118 119 6.993786 AAATTTGAGAGTTAAGCTAGGAGC 57.006 37.500 0.00 0.00 42.84 4.70
206 207 9.513906 TTTCCTTGTAATGTTGATACTTGATGA 57.486 29.630 0.00 0.00 0.00 2.92
207 208 9.513906 TTCCTTGTAATGTTGATACTTGATGAA 57.486 29.630 0.00 0.00 0.00 2.57
208 209 9.685276 TCCTTGTAATGTTGATACTTGATGAAT 57.315 29.630 0.00 0.00 0.00 2.57
264 265 9.699410 ATATAGATGAAGAAACATTTTCCACCA 57.301 29.630 0.00 0.00 0.00 4.17
265 266 6.729690 AGATGAAGAAACATTTTCCACCAA 57.270 33.333 0.00 0.00 0.00 3.67
266 267 7.123355 AGATGAAGAAACATTTTCCACCAAA 57.877 32.000 0.00 0.00 0.00 3.28
267 268 7.563906 AGATGAAGAAACATTTTCCACCAAAA 58.436 30.769 0.00 0.00 38.38 2.44
268 269 8.046107 AGATGAAGAAACATTTTCCACCAAAAA 58.954 29.630 0.00 0.00 37.52 1.94
287 288 5.324832 AAAAAGGAGAGGGATGAAACTCA 57.675 39.130 0.00 0.00 36.20 3.41
288 289 5.527026 AAAAGGAGAGGGATGAAACTCAT 57.473 39.130 0.00 0.00 40.34 2.90
289 290 5.527026 AAAGGAGAGGGATGAAACTCATT 57.473 39.130 0.00 0.00 37.20 2.57
290 291 5.527026 AAGGAGAGGGATGAAACTCATTT 57.473 39.130 0.00 0.00 37.20 2.32
291 292 5.527026 AGGAGAGGGATGAAACTCATTTT 57.473 39.130 0.00 0.00 37.20 1.82
292 293 6.642733 AGGAGAGGGATGAAACTCATTTTA 57.357 37.500 0.00 0.00 37.20 1.52
293 294 6.657875 AGGAGAGGGATGAAACTCATTTTAG 58.342 40.000 0.00 0.00 37.20 1.85
294 295 5.298026 GGAGAGGGATGAAACTCATTTTAGC 59.702 44.000 0.00 0.00 37.20 3.09
295 296 5.819991 AGAGGGATGAAACTCATTTTAGCA 58.180 37.500 0.00 0.00 37.20 3.49
296 297 5.649831 AGAGGGATGAAACTCATTTTAGCAC 59.350 40.000 0.00 0.00 37.20 4.40
297 298 5.324409 AGGGATGAAACTCATTTTAGCACA 58.676 37.500 0.00 0.00 37.20 4.57
298 299 5.774690 AGGGATGAAACTCATTTTAGCACAA 59.225 36.000 0.00 0.00 37.20 3.33
299 300 6.438425 AGGGATGAAACTCATTTTAGCACAAT 59.562 34.615 0.00 0.00 37.20 2.71
300 301 7.615365 AGGGATGAAACTCATTTTAGCACAATA 59.385 33.333 0.00 0.00 37.20 1.90
301 302 7.917505 GGGATGAAACTCATTTTAGCACAATAG 59.082 37.037 0.00 0.00 37.20 1.73
302 303 8.677300 GGATGAAACTCATTTTAGCACAATAGA 58.323 33.333 0.00 0.00 37.20 1.98
303 304 9.495754 GATGAAACTCATTTTAGCACAATAGAC 57.504 33.333 0.00 0.00 37.20 2.59
304 305 7.816640 TGAAACTCATTTTAGCACAATAGACC 58.183 34.615 0.00 0.00 0.00 3.85
305 306 7.665559 TGAAACTCATTTTAGCACAATAGACCT 59.334 33.333 0.00 0.00 0.00 3.85
306 307 7.617041 AACTCATTTTAGCACAATAGACCTC 57.383 36.000 0.00 0.00 0.00 3.85
307 308 6.711277 ACTCATTTTAGCACAATAGACCTCA 58.289 36.000 0.00 0.00 0.00 3.86
308 309 6.820656 ACTCATTTTAGCACAATAGACCTCAG 59.179 38.462 0.00 0.00 0.00 3.35
309 310 6.711277 TCATTTTAGCACAATAGACCTCAGT 58.289 36.000 0.00 0.00 0.00 3.41
310 311 7.168219 TCATTTTAGCACAATAGACCTCAGTT 58.832 34.615 0.00 0.00 0.00 3.16
311 312 7.334421 TCATTTTAGCACAATAGACCTCAGTTC 59.666 37.037 0.00 0.00 0.00 3.01
312 313 3.238108 AGCACAATAGACCTCAGTTCG 57.762 47.619 0.00 0.00 0.00 3.95
313 314 2.093973 AGCACAATAGACCTCAGTTCGG 60.094 50.000 0.00 0.00 0.00 4.30
314 315 2.094182 GCACAATAGACCTCAGTTCGGA 60.094 50.000 0.00 0.00 0.00 4.55
315 316 3.512680 CACAATAGACCTCAGTTCGGAC 58.487 50.000 0.00 0.00 0.00 4.79
316 317 3.056821 CACAATAGACCTCAGTTCGGACA 60.057 47.826 0.00 0.00 0.00 4.02
317 318 3.576982 ACAATAGACCTCAGTTCGGACAA 59.423 43.478 0.00 0.00 0.00 3.18
318 319 4.039973 ACAATAGACCTCAGTTCGGACAAA 59.960 41.667 0.00 0.00 0.00 2.83
319 320 4.884668 ATAGACCTCAGTTCGGACAAAA 57.115 40.909 0.00 0.00 0.00 2.44
320 321 3.553828 AGACCTCAGTTCGGACAAAAA 57.446 42.857 0.00 0.00 0.00 1.94
342 343 7.838771 AAAAATGTAGAGAATACGGTACACC 57.161 36.000 0.00 0.00 0.00 4.16
343 344 6.534475 AAATGTAGAGAATACGGTACACCA 57.466 37.500 0.00 0.00 35.14 4.17
344 345 5.769484 ATGTAGAGAATACGGTACACCAG 57.231 43.478 0.00 0.00 35.14 4.00
345 346 4.592942 TGTAGAGAATACGGTACACCAGT 58.407 43.478 0.00 0.73 35.14 4.00
346 347 5.012239 TGTAGAGAATACGGTACACCAGTT 58.988 41.667 0.00 0.00 35.14 3.16
347 348 5.477984 TGTAGAGAATACGGTACACCAGTTT 59.522 40.000 0.00 0.00 35.14 2.66
348 349 4.817517 AGAGAATACGGTACACCAGTTTG 58.182 43.478 0.00 0.00 35.14 2.93
349 350 3.332034 AGAATACGGTACACCAGTTTGC 58.668 45.455 0.00 0.00 35.14 3.68
350 351 3.007614 AGAATACGGTACACCAGTTTGCT 59.992 43.478 0.00 0.00 35.14 3.91
351 352 2.914695 TACGGTACACCAGTTTGCTT 57.085 45.000 0.00 0.00 35.14 3.91
352 353 2.047002 ACGGTACACCAGTTTGCTTT 57.953 45.000 0.00 0.00 35.14 3.51
353 354 1.673920 ACGGTACACCAGTTTGCTTTG 59.326 47.619 0.00 0.00 35.14 2.77
354 355 1.001815 CGGTACACCAGTTTGCTTTGG 60.002 52.381 0.00 0.00 40.38 3.28
355 356 1.339929 GGTACACCAGTTTGCTTTGGG 59.660 52.381 0.00 0.00 38.82 4.12
356 357 2.303175 GTACACCAGTTTGCTTTGGGA 58.697 47.619 0.00 0.00 38.82 4.37
357 358 2.086610 ACACCAGTTTGCTTTGGGAT 57.913 45.000 0.00 0.00 38.82 3.85
358 359 1.688197 ACACCAGTTTGCTTTGGGATG 59.312 47.619 0.00 0.00 38.82 3.51
359 360 0.681175 ACCAGTTTGCTTTGGGATGC 59.319 50.000 0.00 0.00 38.82 3.91
360 361 0.680618 CCAGTTTGCTTTGGGATGCA 59.319 50.000 0.00 0.00 37.42 3.96
361 362 1.606224 CCAGTTTGCTTTGGGATGCAC 60.606 52.381 0.00 0.00 39.05 4.57
362 363 1.068895 CAGTTTGCTTTGGGATGCACA 59.931 47.619 0.00 0.00 39.05 4.57
363 364 1.761784 AGTTTGCTTTGGGATGCACAA 59.238 42.857 0.00 0.00 39.05 3.33
364 365 2.369532 AGTTTGCTTTGGGATGCACAAT 59.630 40.909 0.00 0.00 39.05 2.71
365 366 2.459060 TTGCTTTGGGATGCACAATG 57.541 45.000 0.00 0.00 39.05 2.82
366 367 1.340088 TGCTTTGGGATGCACAATGT 58.660 45.000 0.00 0.00 33.94 2.71
367 368 2.523245 TGCTTTGGGATGCACAATGTA 58.477 42.857 0.00 0.00 33.94 2.29
368 369 3.098377 TGCTTTGGGATGCACAATGTAT 58.902 40.909 0.00 0.00 33.94 2.29
369 370 4.276642 TGCTTTGGGATGCACAATGTATA 58.723 39.130 0.00 0.00 33.94 1.47
370 371 4.708909 TGCTTTGGGATGCACAATGTATAA 59.291 37.500 0.00 0.00 33.94 0.98
371 372 5.186603 TGCTTTGGGATGCACAATGTATAAA 59.813 36.000 0.00 0.00 33.94 1.40
372 373 6.127111 TGCTTTGGGATGCACAATGTATAAAT 60.127 34.615 0.00 0.00 33.94 1.40
373 374 6.762661 GCTTTGGGATGCACAATGTATAAATT 59.237 34.615 0.00 0.00 0.00 1.82
374 375 7.280652 GCTTTGGGATGCACAATGTATAAATTT 59.719 33.333 0.00 0.00 0.00 1.82
375 376 9.165035 CTTTGGGATGCACAATGTATAAATTTT 57.835 29.630 0.00 0.00 0.00 1.82
376 377 8.489990 TTGGGATGCACAATGTATAAATTTTG 57.510 30.769 0.00 0.00 0.00 2.44
377 378 7.046652 TGGGATGCACAATGTATAAATTTTGG 58.953 34.615 0.00 0.00 0.00 3.28
378 379 6.482973 GGGATGCACAATGTATAAATTTTGGG 59.517 38.462 0.00 0.00 0.00 4.12
379 380 6.482973 GGATGCACAATGTATAAATTTTGGGG 59.517 38.462 0.00 0.00 0.00 4.96
380 381 5.181748 TGCACAATGTATAAATTTTGGGGC 58.818 37.500 0.00 0.00 0.00 5.80
381 382 4.269844 GCACAATGTATAAATTTTGGGGCG 59.730 41.667 0.00 0.00 0.00 6.13
382 383 5.415221 CACAATGTATAAATTTTGGGGCGT 58.585 37.500 0.00 0.00 0.00 5.68
383 384 5.518487 CACAATGTATAAATTTTGGGGCGTC 59.482 40.000 0.00 0.00 0.00 5.19
384 385 5.186021 ACAATGTATAAATTTTGGGGCGTCA 59.814 36.000 0.00 0.00 0.00 4.35
385 386 5.923733 ATGTATAAATTTTGGGGCGTCAA 57.076 34.783 0.00 0.00 0.00 3.18
386 387 5.923733 TGTATAAATTTTGGGGCGTCAAT 57.076 34.783 0.00 0.00 0.00 2.57
387 388 5.897050 TGTATAAATTTTGGGGCGTCAATC 58.103 37.500 0.00 0.00 0.00 2.67
388 389 2.760634 AAATTTTGGGGCGTCAATCC 57.239 45.000 0.00 0.00 0.00 3.01
389 390 0.901827 AATTTTGGGGCGTCAATCCC 59.098 50.000 0.00 0.00 43.42 3.85
390 391 1.319614 ATTTTGGGGCGTCAATCCCG 61.320 55.000 0.00 0.00 46.03 5.14
391 392 2.413211 TTTTGGGGCGTCAATCCCGA 62.413 55.000 0.00 0.00 46.03 5.14
392 393 2.813226 TTTGGGGCGTCAATCCCGAG 62.813 60.000 0.00 0.00 46.03 4.63
393 394 3.782443 GGGGCGTCAATCCCGAGT 61.782 66.667 0.00 0.00 44.86 4.18
394 395 2.511600 GGGCGTCAATCCCGAGTG 60.512 66.667 0.00 0.00 33.43 3.51
395 396 2.577059 GGCGTCAATCCCGAGTGA 59.423 61.111 0.00 0.00 32.55 3.41
396 397 1.079405 GGCGTCAATCCCGAGTGAA 60.079 57.895 0.00 0.00 37.15 3.18
397 398 0.462047 GGCGTCAATCCCGAGTGAAT 60.462 55.000 0.00 0.00 37.15 2.57
398 399 0.652592 GCGTCAATCCCGAGTGAATG 59.347 55.000 0.00 0.00 37.15 2.67
399 400 2.007049 GCGTCAATCCCGAGTGAATGT 61.007 52.381 0.00 0.00 37.15 2.71
400 401 2.346803 CGTCAATCCCGAGTGAATGTT 58.653 47.619 0.00 0.00 37.15 2.71
401 402 2.348666 CGTCAATCCCGAGTGAATGTTC 59.651 50.000 0.00 0.00 37.15 3.18
402 403 2.348666 GTCAATCCCGAGTGAATGTTCG 59.651 50.000 0.00 0.00 37.15 3.95
403 404 1.062587 CAATCCCGAGTGAATGTTCGC 59.937 52.381 0.00 0.00 35.58 4.70
408 409 4.722193 AGTGAATGTTCGCTGGGG 57.278 55.556 7.94 0.00 45.56 4.96
409 410 1.002134 AGTGAATGTTCGCTGGGGG 60.002 57.895 7.94 0.00 45.56 5.40
410 411 1.002624 GTGAATGTTCGCTGGGGGA 60.003 57.895 0.00 0.00 34.94 4.81
411 412 0.608035 GTGAATGTTCGCTGGGGGAA 60.608 55.000 0.00 0.00 34.94 3.97
412 413 0.331278 TGAATGTTCGCTGGGGGAAT 59.669 50.000 0.76 0.00 36.90 3.01
413 414 0.740737 GAATGTTCGCTGGGGGAATG 59.259 55.000 0.76 0.00 36.90 2.67
414 415 0.039618 AATGTTCGCTGGGGGAATGT 59.960 50.000 0.76 0.00 36.90 2.71
415 416 0.394352 ATGTTCGCTGGGGGAATGTC 60.394 55.000 0.76 0.00 36.90 3.06
416 417 1.002624 GTTCGCTGGGGGAATGTCA 60.003 57.895 0.76 0.00 36.90 3.58
417 418 0.394352 GTTCGCTGGGGGAATGTCAT 60.394 55.000 0.76 0.00 36.90 3.06
418 419 0.331278 TTCGCTGGGGGAATGTCATT 59.669 50.000 0.00 0.00 29.74 2.57
419 420 0.107214 TCGCTGGGGGAATGTCATTC 60.107 55.000 16.00 16.00 38.55 2.67
420 421 0.394216 CGCTGGGGGAATGTCATTCA 60.394 55.000 23.67 6.26 41.03 2.57
421 422 1.106285 GCTGGGGGAATGTCATTCAC 58.894 55.000 23.67 21.03 41.96 3.18
422 423 1.382522 CTGGGGGAATGTCATTCACG 58.617 55.000 23.67 7.24 43.62 4.35
423 424 0.988063 TGGGGGAATGTCATTCACGA 59.012 50.000 23.67 12.32 43.62 4.35
424 425 1.352687 TGGGGGAATGTCATTCACGAA 59.647 47.619 23.67 11.39 43.62 3.85
425 426 1.743394 GGGGGAATGTCATTCACGAAC 59.257 52.381 23.67 12.36 43.62 3.95
426 427 1.396996 GGGGAATGTCATTCACGAACG 59.603 52.381 23.67 0.00 43.62 3.95
427 428 1.202031 GGGAATGTCATTCACGAACGC 60.202 52.381 23.67 7.36 41.03 4.84
428 429 1.732259 GGAATGTCATTCACGAACGCT 59.268 47.619 23.67 0.00 41.03 5.07
429 430 2.222819 GGAATGTCATTCACGAACGCTC 60.223 50.000 23.67 3.08 41.03 5.03
430 431 1.359848 ATGTCATTCACGAACGCTCC 58.640 50.000 0.00 0.00 0.00 4.70
431 432 1.006825 TGTCATTCACGAACGCTCCG 61.007 55.000 0.00 0.00 0.00 4.63
432 433 1.007336 GTCATTCACGAACGCTCCGT 61.007 55.000 0.00 0.00 43.97 4.69
433 434 0.522626 TCATTCACGAACGCTCCGTA 59.477 50.000 0.00 0.00 39.99 4.02
434 435 1.133598 TCATTCACGAACGCTCCGTAT 59.866 47.619 0.00 0.00 39.99 3.06
435 436 1.255342 CATTCACGAACGCTCCGTATG 59.745 52.381 0.00 0.00 39.99 2.39
436 437 0.457166 TTCACGAACGCTCCGTATGG 60.457 55.000 0.00 0.00 39.99 2.74
437 438 2.202703 ACGAACGCTCCGTATGGC 60.203 61.111 0.00 0.00 39.99 4.40
438 439 2.202690 CGAACGCTCCGTATGGCA 60.203 61.111 0.00 0.00 39.99 4.92
439 440 2.230940 CGAACGCTCCGTATGGCAG 61.231 63.158 0.00 0.00 39.99 4.85
440 441 1.153628 GAACGCTCCGTATGGCAGT 60.154 57.895 0.00 0.00 39.99 4.40
441 442 0.739813 GAACGCTCCGTATGGCAGTT 60.740 55.000 0.00 2.32 39.99 3.16
442 443 0.321298 AACGCTCCGTATGGCAGTTT 60.321 50.000 0.00 0.00 39.99 2.66
443 444 0.321298 ACGCTCCGTATGGCAGTTTT 60.321 50.000 0.00 0.00 38.73 2.43
444 445 0.096976 CGCTCCGTATGGCAGTTTTG 59.903 55.000 0.00 0.00 34.14 2.44
445 446 1.165270 GCTCCGTATGGCAGTTTTGT 58.835 50.000 0.00 0.00 34.14 2.83
446 447 1.135689 GCTCCGTATGGCAGTTTTGTG 60.136 52.381 0.00 0.00 34.14 3.33
447 448 0.878416 TCCGTATGGCAGTTTTGTGC 59.122 50.000 0.00 0.00 43.19 4.57
448 449 0.454285 CCGTATGGCAGTTTTGTGCG 60.454 55.000 0.00 0.00 45.00 5.34
449 450 0.237235 CGTATGGCAGTTTTGTGCGT 59.763 50.000 0.00 0.00 45.00 5.24
450 451 1.334599 CGTATGGCAGTTTTGTGCGTT 60.335 47.619 0.00 0.00 45.00 4.84
451 452 2.050691 GTATGGCAGTTTTGTGCGTTG 58.949 47.619 0.00 0.00 45.00 4.10
452 453 0.249405 ATGGCAGTTTTGTGCGTTGG 60.249 50.000 0.00 0.00 45.00 3.77
453 454 1.591327 GGCAGTTTTGTGCGTTGGG 60.591 57.895 0.00 0.00 45.00 4.12
454 455 1.140804 GCAGTTTTGTGCGTTGGGT 59.859 52.632 0.00 0.00 32.74 4.51
455 456 0.382515 GCAGTTTTGTGCGTTGGGTA 59.617 50.000 0.00 0.00 32.74 3.69
456 457 1.599419 GCAGTTTTGTGCGTTGGGTAG 60.599 52.381 0.00 0.00 32.74 3.18
457 458 1.001815 CAGTTTTGTGCGTTGGGTAGG 60.002 52.381 0.00 0.00 0.00 3.18
458 459 0.312729 GTTTTGTGCGTTGGGTAGGG 59.687 55.000 0.00 0.00 0.00 3.53
459 460 1.457009 TTTTGTGCGTTGGGTAGGGC 61.457 55.000 0.00 0.00 0.00 5.19
460 461 2.346284 TTTGTGCGTTGGGTAGGGCT 62.346 55.000 0.00 0.00 0.00 5.19
461 462 2.746277 GTGCGTTGGGTAGGGCTG 60.746 66.667 0.00 0.00 0.00 4.85
462 463 4.028490 TGCGTTGGGTAGGGCTGG 62.028 66.667 0.00 0.00 0.00 4.85
463 464 4.796495 GCGTTGGGTAGGGCTGGG 62.796 72.222 0.00 0.00 0.00 4.45
464 465 3.327404 CGTTGGGTAGGGCTGGGT 61.327 66.667 0.00 0.00 0.00 4.51
465 466 2.902457 CGTTGGGTAGGGCTGGGTT 61.902 63.158 0.00 0.00 0.00 4.11
466 467 1.304134 GTTGGGTAGGGCTGGGTTG 60.304 63.158 0.00 0.00 0.00 3.77
467 468 2.543797 TTGGGTAGGGCTGGGTTGG 61.544 63.158 0.00 0.00 0.00 3.77
468 469 4.442454 GGGTAGGGCTGGGTTGGC 62.442 72.222 0.00 0.00 0.00 4.52
469 470 3.657350 GGTAGGGCTGGGTTGGCA 61.657 66.667 0.00 0.00 0.00 4.92
470 471 2.683475 GTAGGGCTGGGTTGGCAT 59.317 61.111 0.00 0.00 0.00 4.40
471 472 1.000359 GTAGGGCTGGGTTGGCATT 60.000 57.895 0.00 0.00 0.00 3.56
472 473 0.614697 GTAGGGCTGGGTTGGCATTT 60.615 55.000 0.00 0.00 0.00 2.32
473 474 0.116143 TAGGGCTGGGTTGGCATTTT 59.884 50.000 0.00 0.00 0.00 1.82
474 475 1.003476 GGGCTGGGTTGGCATTTTG 60.003 57.895 0.00 0.00 0.00 2.44
475 476 1.754107 GGCTGGGTTGGCATTTTGT 59.246 52.632 0.00 0.00 0.00 2.83
476 477 0.972883 GGCTGGGTTGGCATTTTGTA 59.027 50.000 0.00 0.00 0.00 2.41
477 478 1.346068 GGCTGGGTTGGCATTTTGTAA 59.654 47.619 0.00 0.00 0.00 2.41
478 479 2.224402 GGCTGGGTTGGCATTTTGTAAA 60.224 45.455 0.00 0.00 0.00 2.01
479 480 3.471680 GCTGGGTTGGCATTTTGTAAAA 58.528 40.909 0.00 0.00 0.00 1.52
480 481 3.249799 GCTGGGTTGGCATTTTGTAAAAC 59.750 43.478 0.00 0.00 0.00 2.43
481 482 4.702831 CTGGGTTGGCATTTTGTAAAACT 58.297 39.130 0.00 0.00 0.00 2.66
482 483 5.740513 GCTGGGTTGGCATTTTGTAAAACTA 60.741 40.000 0.00 0.00 0.00 2.24
483 484 6.426646 TGGGTTGGCATTTTGTAAAACTAT 57.573 33.333 0.00 0.00 0.00 2.12
484 485 6.459923 TGGGTTGGCATTTTGTAAAACTATC 58.540 36.000 0.00 0.00 0.00 2.08
485 486 6.042093 TGGGTTGGCATTTTGTAAAACTATCA 59.958 34.615 0.00 0.00 0.00 2.15
486 487 7.102993 GGGTTGGCATTTTGTAAAACTATCAT 58.897 34.615 0.00 0.00 0.00 2.45
487 488 7.064490 GGGTTGGCATTTTGTAAAACTATCATG 59.936 37.037 0.00 0.00 0.00 3.07
488 489 7.064490 GGTTGGCATTTTGTAAAACTATCATGG 59.936 37.037 0.00 0.00 0.00 3.66
489 490 6.105333 TGGCATTTTGTAAAACTATCATGGC 58.895 36.000 0.00 0.00 31.02 4.40
490 491 6.105333 GGCATTTTGTAAAACTATCATGGCA 58.895 36.000 0.00 0.00 30.85 4.92
491 492 6.256321 GGCATTTTGTAAAACTATCATGGCAG 59.744 38.462 0.00 0.00 30.85 4.85
492 493 6.813152 GCATTTTGTAAAACTATCATGGCAGT 59.187 34.615 0.00 0.00 0.00 4.40
493 494 7.331687 GCATTTTGTAAAACTATCATGGCAGTT 59.668 33.333 6.94 6.94 36.56 3.16
494 495 9.206870 CATTTTGTAAAACTATCATGGCAGTTT 57.793 29.630 15.62 15.62 44.72 2.66
495 496 8.586570 TTTTGTAAAACTATCATGGCAGTTTG 57.413 30.769 19.68 0.00 42.62 2.93
496 497 6.892658 TGTAAAACTATCATGGCAGTTTGT 57.107 33.333 19.68 14.20 42.62 2.83
497 498 7.283625 TGTAAAACTATCATGGCAGTTTGTT 57.716 32.000 19.68 11.64 42.62 2.83
498 499 7.367285 TGTAAAACTATCATGGCAGTTTGTTC 58.633 34.615 19.68 14.79 42.62 3.18
499 500 6.403866 AAAACTATCATGGCAGTTTGTTCA 57.596 33.333 19.68 0.00 42.62 3.18
500 501 6.403866 AAACTATCATGGCAGTTTGTTCAA 57.596 33.333 18.80 0.00 42.03 2.69
501 502 6.403866 AACTATCATGGCAGTTTGTTCAAA 57.596 33.333 6.94 0.00 30.89 2.69
502 503 6.594788 ACTATCATGGCAGTTTGTTCAAAT 57.405 33.333 0.00 0.00 0.00 2.32
503 504 6.996509 ACTATCATGGCAGTTTGTTCAAATT 58.003 32.000 0.00 0.00 0.00 1.82
504 505 6.869913 ACTATCATGGCAGTTTGTTCAAATTG 59.130 34.615 13.72 13.72 0.00 2.32
505 506 5.021033 TCATGGCAGTTTGTTCAAATTGT 57.979 34.783 17.37 1.47 0.00 2.71
506 507 4.809958 TCATGGCAGTTTGTTCAAATTGTG 59.190 37.500 17.37 10.83 0.00 3.33
507 508 2.935201 TGGCAGTTTGTTCAAATTGTGC 59.065 40.909 17.37 16.31 0.00 4.57
508 509 2.033832 GGCAGTTTGTTCAAATTGTGCG 60.034 45.455 17.37 0.00 0.00 5.34
509 510 2.033832 GCAGTTTGTTCAAATTGTGCGG 60.034 45.455 17.37 2.30 0.00 5.69
510 511 3.186119 CAGTTTGTTCAAATTGTGCGGT 58.814 40.909 10.99 0.00 0.00 5.68
511 512 3.616379 CAGTTTGTTCAAATTGTGCGGTT 59.384 39.130 10.99 0.00 0.00 4.44
512 513 4.800993 CAGTTTGTTCAAATTGTGCGGTTA 59.199 37.500 10.99 0.00 0.00 2.85
513 514 5.461737 CAGTTTGTTCAAATTGTGCGGTTAT 59.538 36.000 10.99 0.00 0.00 1.89
514 515 6.019156 CAGTTTGTTCAAATTGTGCGGTTATT 60.019 34.615 10.99 0.00 0.00 1.40
515 516 6.536941 AGTTTGTTCAAATTGTGCGGTTATTT 59.463 30.769 1.33 0.00 0.00 1.40
516 517 6.910536 TTGTTCAAATTGTGCGGTTATTTT 57.089 29.167 0.00 0.00 0.00 1.82
517 518 6.910536 TGTTCAAATTGTGCGGTTATTTTT 57.089 29.167 0.00 0.00 0.00 1.94
535 536 4.506886 TTTTTCACAAAACTGTCACCGT 57.493 36.364 0.00 0.00 0.00 4.83
536 537 3.750639 TTTCACAAAACTGTCACCGTC 57.249 42.857 0.00 0.00 0.00 4.79
537 538 1.282817 TCACAAAACTGTCACCGTCG 58.717 50.000 0.00 0.00 0.00 5.12
538 539 0.303493 CACAAAACTGTCACCGTCGG 59.697 55.000 10.48 10.48 0.00 4.79
539 540 0.176219 ACAAAACTGTCACCGTCGGA 59.824 50.000 20.51 0.00 0.00 4.55
540 541 1.202604 ACAAAACTGTCACCGTCGGAT 60.203 47.619 20.51 0.00 0.00 4.18
541 542 1.194547 CAAAACTGTCACCGTCGGATG 59.805 52.381 20.51 12.61 0.00 3.51
542 543 0.949105 AAACTGTCACCGTCGGATGC 60.949 55.000 20.51 7.50 0.00 3.91
543 544 2.509336 CTGTCACCGTCGGATGCC 60.509 66.667 20.51 3.05 0.00 4.40
559 560 2.341543 CCGATCTGATGGCTCCGG 59.658 66.667 0.00 0.00 0.00 5.14
560 561 2.341543 CGATCTGATGGCTCCGGG 59.658 66.667 0.00 0.00 0.00 5.73
561 562 2.746359 GATCTGATGGCTCCGGGG 59.254 66.667 0.00 0.00 0.00 5.73
562 563 1.838846 GATCTGATGGCTCCGGGGA 60.839 63.158 4.80 0.00 0.00 4.81
563 564 2.105806 GATCTGATGGCTCCGGGGAC 62.106 65.000 4.80 0.19 0.00 4.46
564 565 2.896677 ATCTGATGGCTCCGGGGACA 62.897 60.000 15.46 15.46 0.00 4.02
565 566 2.366837 TGATGGCTCCGGGGACAT 60.367 61.111 26.99 26.99 0.00 3.06
566 567 1.987807 CTGATGGCTCCGGGGACATT 61.988 60.000 27.38 8.18 0.00 2.71
567 568 1.227973 GATGGCTCCGGGGACATTC 60.228 63.158 27.38 14.12 0.00 2.67
568 569 2.996168 GATGGCTCCGGGGACATTCG 62.996 65.000 27.38 0.00 0.00 3.34
570 571 4.162690 GCTCCGGGGACATTCGCT 62.163 66.667 4.80 0.00 0.00 4.93
571 572 2.202932 CTCCGGGGACATTCGCTG 60.203 66.667 0.00 0.00 35.68 5.18
574 575 3.781307 CGGGGACATTCGCTGGGA 61.781 66.667 0.00 0.00 32.67 4.37
575 576 2.919043 GGGGACATTCGCTGGGAT 59.081 61.111 0.00 0.00 0.00 3.85
576 577 1.227973 GGGGACATTCGCTGGGATC 60.228 63.158 0.00 0.00 0.00 3.36
577 578 1.227973 GGGACATTCGCTGGGATCC 60.228 63.158 1.92 1.92 0.00 3.36
578 579 1.227973 GGACATTCGCTGGGATCCC 60.228 63.158 25.22 25.22 0.00 3.85
579 580 1.526887 GACATTCGCTGGGATCCCA 59.473 57.895 31.83 31.83 45.02 4.37
580 581 0.815615 GACATTCGCTGGGATCCCAC 60.816 60.000 30.62 23.32 41.89 4.61
581 582 1.526917 CATTCGCTGGGATCCCACC 60.527 63.158 30.62 22.51 41.89 4.61
588 589 2.039831 GGGATCCCACCCCTAGCA 60.040 66.667 26.95 0.00 43.81 3.49
589 590 1.696314 GGGATCCCACCCCTAGCAA 60.696 63.158 26.95 0.00 43.81 3.91
590 591 1.286305 GGGATCCCACCCCTAGCAAA 61.286 60.000 26.95 0.00 43.81 3.68
591 592 0.106669 GGATCCCACCCCTAGCAAAC 60.107 60.000 0.00 0.00 0.00 2.93
592 593 0.463833 GATCCCACCCCTAGCAAACG 60.464 60.000 0.00 0.00 0.00 3.60
593 594 1.205460 ATCCCACCCCTAGCAAACGT 61.205 55.000 0.00 0.00 0.00 3.99
594 595 1.074248 CCCACCCCTAGCAAACGTT 59.926 57.895 0.00 0.00 0.00 3.99
595 596 0.958876 CCCACCCCTAGCAAACGTTC 60.959 60.000 0.00 0.00 0.00 3.95
596 597 1.296056 CCACCCCTAGCAAACGTTCG 61.296 60.000 0.00 0.00 0.00 3.95
597 598 1.670083 ACCCCTAGCAAACGTTCGC 60.670 57.895 2.15 2.15 0.00 4.70
598 599 2.396157 CCCCTAGCAAACGTTCGCC 61.396 63.158 7.78 0.00 0.00 5.54
599 600 1.669760 CCCTAGCAAACGTTCGCCA 60.670 57.895 7.78 0.00 0.00 5.69
600 601 1.635663 CCCTAGCAAACGTTCGCCAG 61.636 60.000 7.78 3.27 0.00 4.85
601 602 0.669318 CCTAGCAAACGTTCGCCAGA 60.669 55.000 8.29 0.00 0.00 3.86
602 603 1.359848 CTAGCAAACGTTCGCCAGAT 58.640 50.000 7.78 0.00 0.00 2.90
603 604 2.536365 CTAGCAAACGTTCGCCAGATA 58.464 47.619 7.78 0.00 0.00 1.98
604 605 1.076332 AGCAAACGTTCGCCAGATAC 58.924 50.000 7.78 0.00 0.00 2.24
605 606 0.793861 GCAAACGTTCGCCAGATACA 59.206 50.000 0.00 0.00 0.00 2.29
606 607 1.396996 GCAAACGTTCGCCAGATACAT 59.603 47.619 0.00 0.00 0.00 2.29
607 608 2.159572 GCAAACGTTCGCCAGATACATT 60.160 45.455 0.00 0.00 0.00 2.71
608 609 3.669557 GCAAACGTTCGCCAGATACATTT 60.670 43.478 0.00 0.00 0.00 2.32
609 610 4.472286 CAAACGTTCGCCAGATACATTTT 58.528 39.130 0.00 0.00 0.00 1.82
610 611 4.759516 AACGTTCGCCAGATACATTTTT 57.240 36.364 0.00 0.00 0.00 1.94
674 679 2.360350 CAACCTGCAGCCGGTGAT 60.360 61.111 9.62 0.00 34.33 3.06
751 793 3.274586 CCATGTGCTGCCGATCCG 61.275 66.667 0.00 0.00 0.00 4.18
769 811 1.959226 GGCCGTCTTCGCAACAAGA 60.959 57.895 0.00 0.00 35.54 3.02
831 913 9.737427 ATACAACACTCGATTAACTCTAATCTG 57.263 33.333 0.00 0.00 40.87 2.90
846 929 5.423015 TCTAATCTGTTCCTGCTAAGCTTG 58.577 41.667 9.86 0.01 0.00 4.01
983 1108 4.405680 CCCTTTAAAATCCCAACCATCTCC 59.594 45.833 0.00 0.00 0.00 3.71
984 1109 4.405680 CCTTTAAAATCCCAACCATCTCCC 59.594 45.833 0.00 0.00 0.00 4.30
985 1110 4.965283 TTAAAATCCCAACCATCTCCCT 57.035 40.909 0.00 0.00 0.00 4.20
986 1111 3.388552 AAAATCCCAACCATCTCCCTC 57.611 47.619 0.00 0.00 0.00 4.30
1038 1205 1.738365 CGATCCAGCGATCATCCATCC 60.738 57.143 0.00 0.00 44.55 3.51
1559 1803 3.530260 GGGGTGCCATGCCATTCG 61.530 66.667 0.00 0.00 0.00 3.34
1613 1875 2.354188 GCGGTTTGTTTGGGCGAC 60.354 61.111 0.00 0.00 0.00 5.19
1649 1915 1.710013 TAACTGAGTGTTAGCAGCGC 58.290 50.000 0.00 0.00 39.89 5.92
1676 1942 9.793252 TCATTTCTTTCTTCAGAGTTTTTCTTG 57.207 29.630 0.00 0.00 32.41 3.02
1677 1943 9.028185 CATTTCTTTCTTCAGAGTTTTTCTTGG 57.972 33.333 0.00 0.00 32.41 3.61
1678 1944 6.699575 TCTTTCTTCAGAGTTTTTCTTGGG 57.300 37.500 0.00 0.00 32.41 4.12
1684 1950 5.132043 TCAGAGTTTTTCTTGGGGGTTTA 57.868 39.130 0.00 0.00 32.41 2.01
1686 1952 6.140377 TCAGAGTTTTTCTTGGGGGTTTAAT 58.860 36.000 0.00 0.00 32.41 1.40
1715 1982 2.775351 GATTCGGCCGGTTGAATCA 58.225 52.632 29.93 0.00 46.17 2.57
1725 1992 3.798548 GCCGGTTGAATCAAAACATGTGT 60.799 43.478 1.90 0.00 0.00 3.72
1802 2236 5.483811 TGTATAAGGAGTTCGCAATGACAA 58.516 37.500 0.00 0.00 0.00 3.18
1845 2289 1.731709 GTACATGCGTGTGCTCATTCA 59.268 47.619 21.92 0.00 43.34 2.57
1850 2294 0.110509 GCGTGTGCTCATTCACTGTG 60.111 55.000 0.17 0.17 37.81 3.66
1851 2295 1.501169 CGTGTGCTCATTCACTGTGA 58.499 50.000 6.36 6.36 37.81 3.58
1865 2310 2.495270 CACTGTGACTGGCTCATCTACT 59.505 50.000 0.32 0.00 0.00 2.57
1879 2324 6.035843 GCTCATCTACTCTCTTCTGACAAAG 58.964 44.000 0.00 0.00 0.00 2.77
1898 2343 7.228507 TGACAAAGTTAGCAATACAGTTCACAT 59.771 33.333 0.00 0.00 0.00 3.21
1899 2344 7.362662 ACAAAGTTAGCAATACAGTTCACATG 58.637 34.615 0.00 0.00 0.00 3.21
1910 2355 3.748048 ACAGTTCACATGATGCTACACAC 59.252 43.478 0.00 0.00 0.00 3.82
1948 2397 9.836864 AGTCTATTTGTGTGCATATATTCTTCA 57.163 29.630 0.00 0.00 0.00 3.02
1974 2423 9.013229 AGATGAAATTAGCAATACAGTTCACAA 57.987 29.630 0.00 0.00 0.00 3.33
2002 2454 6.102663 GCTACACATACAGTCTGACAGAATT 58.897 40.000 6.76 0.15 0.00 2.17
2008 2460 4.881019 ACAGTCTGACAGAATTAGCAGT 57.119 40.909 6.76 0.00 0.00 4.40
2045 2497 4.141642 TGCTAGCACATACTCCATGAACAT 60.142 41.667 14.93 0.00 38.10 2.71
2056 2508 1.475280 CCATGAACATTGCTGGTGGAG 59.525 52.381 0.00 0.00 0.00 3.86
2083 2535 4.008074 ACAGTGTGAATTGGGAGTACTG 57.992 45.455 0.00 0.00 39.77 2.74
2113 2565 1.615392 AGCAATTTTCTCCACCAGCAC 59.385 47.619 0.00 0.00 0.00 4.40
2139 2593 8.082242 CGTACTGATGTACATCCATTCTTCATA 58.918 37.037 28.64 8.80 46.88 2.15
2205 2660 0.676782 AACATGTAACCGCCAGCTCC 60.677 55.000 0.00 0.00 0.00 4.70
2219 2674 2.361230 CTCCCCCGGACAAAAGCC 60.361 66.667 0.73 0.00 0.00 4.35
2290 2761 1.568025 GACCAGTGGCGAAAACGTC 59.432 57.895 9.78 0.00 0.00 4.34
2300 2771 1.680105 CGAAAACGTCGGGTGGATCG 61.680 60.000 0.00 0.00 46.45 3.69
2301 2772 1.356527 GAAAACGTCGGGTGGATCGG 61.357 60.000 0.00 0.00 0.00 4.18
2302 2773 1.818959 AAAACGTCGGGTGGATCGGA 61.819 55.000 0.00 0.00 0.00 4.55
2303 2774 2.496828 AAACGTCGGGTGGATCGGAC 62.497 60.000 0.00 0.00 34.81 4.79
2304 2775 3.445687 CGTCGGGTGGATCGGACA 61.446 66.667 0.00 0.00 36.98 4.02
2305 2776 2.782222 CGTCGGGTGGATCGGACAT 61.782 63.158 0.00 0.00 36.98 3.06
2306 2777 1.227263 GTCGGGTGGATCGGACATG 60.227 63.158 0.00 0.00 37.09 3.21
2325 2796 1.421410 GGCAATCGTCAGTGCTACGG 61.421 60.000 4.72 0.00 40.70 4.02
2384 2855 1.281925 AACTGCCCCGGGAATCAGAT 61.282 55.000 30.89 22.03 0.00 2.90
2496 3038 1.072806 ACATCAGAGCCAAGTCAAGCA 59.927 47.619 0.00 0.00 0.00 3.91
2558 3105 3.949113 AGAAAGGTTTCACCGCAGTTAAA 59.051 39.130 5.30 0.00 44.90 1.52
2559 3106 4.583073 AGAAAGGTTTCACCGCAGTTAAAT 59.417 37.500 5.30 0.00 44.90 1.40
2560 3107 5.766174 AGAAAGGTTTCACCGCAGTTAAATA 59.234 36.000 5.30 0.00 44.90 1.40
2561 3108 5.366829 AAGGTTTCACCGCAGTTAAATAC 57.633 39.130 0.00 0.00 44.90 1.89
2562 3109 3.434299 AGGTTTCACCGCAGTTAAATACG 59.566 43.478 0.00 0.00 44.90 3.06
2563 3110 3.187022 GGTTTCACCGCAGTTAAATACGT 59.813 43.478 0.00 0.00 0.00 3.57
2564 3111 4.388790 GTTTCACCGCAGTTAAATACGTC 58.611 43.478 0.00 0.00 0.00 4.34
2565 3112 2.252747 TCACCGCAGTTAAATACGTCG 58.747 47.619 0.00 0.00 0.00 5.12
2566 3113 2.095314 TCACCGCAGTTAAATACGTCGA 60.095 45.455 0.00 0.00 0.00 4.20
2567 3114 2.027214 CACCGCAGTTAAATACGTCGAC 59.973 50.000 5.18 5.18 0.00 4.20
2568 3115 1.251002 CCGCAGTTAAATACGTCGACG 59.749 52.381 34.58 34.58 46.33 5.12
2569 3116 1.251002 CGCAGTTAAATACGTCGACGG 59.749 52.381 37.89 21.83 44.95 4.79
2570 3117 2.518949 GCAGTTAAATACGTCGACGGA 58.481 47.619 37.89 33.32 44.95 4.69
2571 3118 3.111098 GCAGTTAAATACGTCGACGGAT 58.889 45.455 37.89 34.00 46.41 4.18
2578 3125 2.995466 TACGTCGACGGATTTCTTGT 57.005 45.000 37.89 18.54 44.95 3.16
2579 3126 2.144482 ACGTCGACGGATTTCTTGTT 57.856 45.000 37.89 13.44 44.95 2.83
2580 3127 2.476821 ACGTCGACGGATTTCTTGTTT 58.523 42.857 37.89 12.90 44.95 2.83
2581 3128 2.867975 ACGTCGACGGATTTCTTGTTTT 59.132 40.909 37.89 12.69 44.95 2.43
2582 3129 3.310501 ACGTCGACGGATTTCTTGTTTTT 59.689 39.130 37.89 12.24 44.95 1.94
2646 3193 2.098607 TCGACCACAACTCGGATCATAC 59.901 50.000 0.00 0.00 0.00 2.39
2720 3267 0.874594 AGGGGAGGGGCATGTATCTA 59.125 55.000 0.00 0.00 0.00 1.98
2795 3345 4.785453 GAAGAGGGGGCAGTGGCG 62.785 72.222 10.99 0.00 42.47 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.454812 GGCCAATGAAGACCTACCTAGAA 59.545 47.826 0.00 0.00 0.00 2.10
1 2 3.039011 GGCCAATGAAGACCTACCTAGA 58.961 50.000 0.00 0.00 0.00 2.43
2 3 2.771943 TGGCCAATGAAGACCTACCTAG 59.228 50.000 0.61 0.00 0.00 3.02
3 4 2.840511 TGGCCAATGAAGACCTACCTA 58.159 47.619 0.61 0.00 0.00 3.08
4 5 1.668826 TGGCCAATGAAGACCTACCT 58.331 50.000 0.61 0.00 0.00 3.08
5 6 2.736670 ATGGCCAATGAAGACCTACC 57.263 50.000 10.96 0.00 0.00 3.18
6 7 3.142174 GCTATGGCCAATGAAGACCTAC 58.858 50.000 10.96 0.00 0.00 3.18
7 8 3.492102 GCTATGGCCAATGAAGACCTA 57.508 47.619 10.96 0.00 0.00 3.08
8 9 2.355010 GCTATGGCCAATGAAGACCT 57.645 50.000 10.96 0.00 0.00 3.85
20 21 0.394565 ATGAAGACCGAGGCTATGGC 59.605 55.000 5.22 0.00 37.82 4.40
21 22 1.336332 CGATGAAGACCGAGGCTATGG 60.336 57.143 3.81 3.81 0.00 2.74
22 23 1.609072 TCGATGAAGACCGAGGCTATG 59.391 52.381 0.00 0.00 0.00 2.23
23 24 1.982660 TCGATGAAGACCGAGGCTAT 58.017 50.000 0.00 0.00 0.00 2.97
24 25 1.758936 TTCGATGAAGACCGAGGCTA 58.241 50.000 0.00 0.00 36.11 3.93
25 26 1.067821 GATTCGATGAAGACCGAGGCT 59.932 52.381 0.00 0.00 36.11 4.58
26 27 1.202417 TGATTCGATGAAGACCGAGGC 60.202 52.381 0.00 0.00 36.11 4.70
27 28 2.871182 TGATTCGATGAAGACCGAGG 57.129 50.000 0.00 0.00 36.11 4.63
28 29 5.291858 TCAATTTGATTCGATGAAGACCGAG 59.708 40.000 0.00 0.00 36.11 4.63
29 30 5.175127 TCAATTTGATTCGATGAAGACCGA 58.825 37.500 0.00 0.00 0.00 4.69
30 31 5.469373 TCAATTTGATTCGATGAAGACCG 57.531 39.130 0.00 0.00 0.00 4.79
31 32 5.065731 AGCTCAATTTGATTCGATGAAGACC 59.934 40.000 0.00 0.00 0.00 3.85
32 33 6.116680 AGCTCAATTTGATTCGATGAAGAC 57.883 37.500 0.00 0.00 0.00 3.01
33 34 7.095899 CGATAGCTCAATTTGATTCGATGAAGA 60.096 37.037 0.00 0.00 0.00 2.87
34 35 7.008278 CGATAGCTCAATTTGATTCGATGAAG 58.992 38.462 0.00 0.00 0.00 3.02
35 36 6.701400 TCGATAGCTCAATTTGATTCGATGAA 59.299 34.615 14.50 0.00 30.30 2.57
36 37 6.215845 TCGATAGCTCAATTTGATTCGATGA 58.784 36.000 14.50 3.53 30.30 2.92
37 38 6.457851 TCGATAGCTCAATTTGATTCGATG 57.542 37.500 14.50 0.39 30.30 3.84
38 39 6.648310 ACATCGATAGCTCAATTTGATTCGAT 59.352 34.615 19.73 19.73 43.52 3.59
39 40 5.985530 ACATCGATAGCTCAATTTGATTCGA 59.014 36.000 17.99 17.99 38.54 3.71
40 41 6.220579 ACATCGATAGCTCAATTTGATTCG 57.779 37.500 0.00 7.09 0.00 3.34
41 42 7.633621 TGAACATCGATAGCTCAATTTGATTC 58.366 34.615 0.00 0.00 0.00 2.52
42 43 7.558161 TGAACATCGATAGCTCAATTTGATT 57.442 32.000 0.00 0.00 0.00 2.57
43 44 7.558161 TTGAACATCGATAGCTCAATTTGAT 57.442 32.000 0.00 0.00 0.00 2.57
44 45 6.983474 TTGAACATCGATAGCTCAATTTGA 57.017 33.333 0.00 0.00 0.00 2.69
45 46 8.624701 AATTTGAACATCGATAGCTCAATTTG 57.375 30.769 13.62 0.00 0.00 2.32
46 47 9.079833 CAAATTTGAACATCGATAGCTCAATTT 57.920 29.630 13.08 13.15 0.00 1.82
47 48 8.246180 ACAAATTTGAACATCGATAGCTCAATT 58.754 29.630 24.64 9.39 0.00 2.32
48 49 7.699391 CACAAATTTGAACATCGATAGCTCAAT 59.301 33.333 24.64 2.47 0.00 2.57
49 50 7.022979 CACAAATTTGAACATCGATAGCTCAA 58.977 34.615 24.64 4.80 0.00 3.02
50 51 6.149308 ACACAAATTTGAACATCGATAGCTCA 59.851 34.615 24.64 0.00 0.00 4.26
51 52 6.467047 CACACAAATTTGAACATCGATAGCTC 59.533 38.462 24.64 0.00 0.00 4.09
52 53 6.149308 TCACACAAATTTGAACATCGATAGCT 59.851 34.615 24.64 0.00 0.00 3.32
53 54 6.314018 TCACACAAATTTGAACATCGATAGC 58.686 36.000 24.64 0.00 0.00 2.97
54 55 8.900511 ATTCACACAAATTTGAACATCGATAG 57.099 30.769 24.64 0.00 34.61 2.08
55 56 9.689976 AAATTCACACAAATTTGAACATCGATA 57.310 25.926 24.64 1.68 37.43 2.92
56 57 8.592105 AAATTCACACAAATTTGAACATCGAT 57.408 26.923 24.64 0.00 37.43 3.59
57 58 8.417780 AAAATTCACACAAATTTGAACATCGA 57.582 26.923 24.64 8.82 38.51 3.59
82 83 8.706322 AACTCTCAAATTTAGCTCCCTAAAAA 57.294 30.769 0.00 0.00 44.30 1.94
83 84 9.802039 TTAACTCTCAAATTTAGCTCCCTAAAA 57.198 29.630 0.00 0.00 44.30 1.52
84 85 9.449719 CTTAACTCTCAAATTTAGCTCCCTAAA 57.550 33.333 0.00 0.00 44.98 1.85
85 86 7.553044 GCTTAACTCTCAAATTTAGCTCCCTAA 59.447 37.037 0.00 0.00 0.00 2.69
86 87 7.048512 GCTTAACTCTCAAATTTAGCTCCCTA 58.951 38.462 0.00 0.00 0.00 3.53
87 88 5.883115 GCTTAACTCTCAAATTTAGCTCCCT 59.117 40.000 0.00 0.00 0.00 4.20
88 89 5.883115 AGCTTAACTCTCAAATTTAGCTCCC 59.117 40.000 0.00 0.00 0.00 4.30
89 90 6.993786 AGCTTAACTCTCAAATTTAGCTCC 57.006 37.500 0.00 0.00 0.00 4.70
90 91 7.982354 TCCTAGCTTAACTCTCAAATTTAGCTC 59.018 37.037 10.31 0.00 0.00 4.09
91 92 7.852263 TCCTAGCTTAACTCTCAAATTTAGCT 58.148 34.615 11.43 11.43 0.00 3.32
92 93 7.254624 GCTCCTAGCTTAACTCTCAAATTTAGC 60.255 40.741 0.00 0.00 38.45 3.09
93 94 8.137210 GCTCCTAGCTTAACTCTCAAATTTAG 57.863 38.462 0.00 0.00 38.45 1.85
95 96 6.993786 GCTCCTAGCTTAACTCTCAAATTT 57.006 37.500 0.00 0.00 38.45 1.82
180 181 9.513906 TCATCAAGTATCAACATTACAAGGAAA 57.486 29.630 0.00 0.00 0.00 3.13
181 182 9.513906 TTCATCAAGTATCAACATTACAAGGAA 57.486 29.630 0.00 0.00 0.00 3.36
182 183 9.685276 ATTCATCAAGTATCAACATTACAAGGA 57.315 29.630 0.00 0.00 0.00 3.36
238 239 9.699410 TGGTGGAAAATGTTTCTTCATCTATAT 57.301 29.630 1.11 0.00 0.00 0.86
239 240 9.527157 TTGGTGGAAAATGTTTCTTCATCTATA 57.473 29.630 1.11 0.00 0.00 1.31
240 241 8.421249 TTGGTGGAAAATGTTTCTTCATCTAT 57.579 30.769 1.11 0.00 0.00 1.98
241 242 7.831691 TTGGTGGAAAATGTTTCTTCATCTA 57.168 32.000 1.11 0.00 0.00 1.98
242 243 6.729690 TTGGTGGAAAATGTTTCTTCATCT 57.270 33.333 1.11 0.00 0.00 2.90
243 244 7.784633 TTTTGGTGGAAAATGTTTCTTCATC 57.215 32.000 1.11 0.00 0.00 2.92
265 266 5.324832 TGAGTTTCATCCCTCTCCTTTTT 57.675 39.130 0.00 0.00 0.00 1.94
266 267 5.527026 ATGAGTTTCATCCCTCTCCTTTT 57.473 39.130 0.00 0.00 29.59 2.27
267 268 5.527026 AATGAGTTTCATCCCTCTCCTTT 57.473 39.130 0.00 0.00 35.76 3.11
268 269 5.527026 AAATGAGTTTCATCCCTCTCCTT 57.473 39.130 0.00 0.00 35.76 3.36
269 270 5.527026 AAAATGAGTTTCATCCCTCTCCT 57.473 39.130 0.00 0.00 35.76 3.69
270 271 5.298026 GCTAAAATGAGTTTCATCCCTCTCC 59.702 44.000 0.00 0.00 35.76 3.71
271 272 5.882557 TGCTAAAATGAGTTTCATCCCTCTC 59.117 40.000 0.00 0.00 35.76 3.20
272 273 5.649831 GTGCTAAAATGAGTTTCATCCCTCT 59.350 40.000 0.00 0.00 35.76 3.69
273 274 5.415701 TGTGCTAAAATGAGTTTCATCCCTC 59.584 40.000 0.00 0.00 35.76 4.30
274 275 5.324409 TGTGCTAAAATGAGTTTCATCCCT 58.676 37.500 0.00 0.00 35.76 4.20
275 276 5.643379 TGTGCTAAAATGAGTTTCATCCC 57.357 39.130 0.00 0.00 35.76 3.85
276 277 8.677300 TCTATTGTGCTAAAATGAGTTTCATCC 58.323 33.333 0.00 0.00 35.76 3.51
277 278 9.495754 GTCTATTGTGCTAAAATGAGTTTCATC 57.504 33.333 0.00 0.00 35.76 2.92
278 279 8.462016 GGTCTATTGTGCTAAAATGAGTTTCAT 58.538 33.333 0.00 0.00 39.09 2.57
279 280 7.665559 AGGTCTATTGTGCTAAAATGAGTTTCA 59.334 33.333 0.00 0.00 0.00 2.69
280 281 8.045176 AGGTCTATTGTGCTAAAATGAGTTTC 57.955 34.615 0.00 0.00 0.00 2.78
281 282 7.665559 TGAGGTCTATTGTGCTAAAATGAGTTT 59.334 33.333 0.00 0.00 0.00 2.66
282 283 7.168219 TGAGGTCTATTGTGCTAAAATGAGTT 58.832 34.615 0.00 0.00 0.00 3.01
283 284 6.711277 TGAGGTCTATTGTGCTAAAATGAGT 58.289 36.000 0.00 0.00 0.00 3.41
284 285 6.820656 ACTGAGGTCTATTGTGCTAAAATGAG 59.179 38.462 0.00 0.00 0.00 2.90
285 286 6.711277 ACTGAGGTCTATTGTGCTAAAATGA 58.289 36.000 0.00 0.00 0.00 2.57
286 287 6.992063 ACTGAGGTCTATTGTGCTAAAATG 57.008 37.500 0.00 0.00 0.00 2.32
287 288 6.313905 CGAACTGAGGTCTATTGTGCTAAAAT 59.686 38.462 0.00 0.00 0.00 1.82
288 289 5.637810 CGAACTGAGGTCTATTGTGCTAAAA 59.362 40.000 0.00 0.00 0.00 1.52
289 290 5.168569 CGAACTGAGGTCTATTGTGCTAAA 58.831 41.667 0.00 0.00 0.00 1.85
290 291 4.381612 CCGAACTGAGGTCTATTGTGCTAA 60.382 45.833 0.00 0.00 0.00 3.09
291 292 3.130516 CCGAACTGAGGTCTATTGTGCTA 59.869 47.826 0.00 0.00 0.00 3.49
292 293 2.093973 CCGAACTGAGGTCTATTGTGCT 60.094 50.000 0.00 0.00 0.00 4.40
293 294 2.094182 TCCGAACTGAGGTCTATTGTGC 60.094 50.000 0.00 0.00 0.00 4.57
294 295 3.056821 TGTCCGAACTGAGGTCTATTGTG 60.057 47.826 0.00 0.00 0.00 3.33
295 296 3.162666 TGTCCGAACTGAGGTCTATTGT 58.837 45.455 0.00 0.00 0.00 2.71
296 297 3.868757 TGTCCGAACTGAGGTCTATTG 57.131 47.619 0.00 0.00 0.00 1.90
297 298 4.884668 TTTGTCCGAACTGAGGTCTATT 57.115 40.909 0.00 0.00 0.00 1.73
298 299 4.884668 TTTTGTCCGAACTGAGGTCTAT 57.115 40.909 0.00 0.00 0.00 1.98
299 300 4.675976 TTTTTGTCCGAACTGAGGTCTA 57.324 40.909 0.00 0.00 0.00 2.59
300 301 3.553828 TTTTTGTCCGAACTGAGGTCT 57.446 42.857 0.00 0.00 0.00 3.85
318 319 7.388437 TGGTGTACCGTATTCTCTACATTTTT 58.612 34.615 0.00 0.00 39.43 1.94
319 320 6.938507 TGGTGTACCGTATTCTCTACATTTT 58.061 36.000 0.00 0.00 39.43 1.82
320 321 6.154021 ACTGGTGTACCGTATTCTCTACATTT 59.846 38.462 0.00 0.00 39.43 2.32
321 322 5.655532 ACTGGTGTACCGTATTCTCTACATT 59.344 40.000 0.00 0.00 39.43 2.71
322 323 5.198965 ACTGGTGTACCGTATTCTCTACAT 58.801 41.667 0.00 0.00 39.43 2.29
323 324 4.592942 ACTGGTGTACCGTATTCTCTACA 58.407 43.478 0.00 0.00 39.43 2.74
324 325 5.573337 AACTGGTGTACCGTATTCTCTAC 57.427 43.478 0.00 0.00 39.43 2.59
325 326 5.622914 GCAAACTGGTGTACCGTATTCTCTA 60.623 44.000 0.00 0.00 39.43 2.43
326 327 4.817517 CAAACTGGTGTACCGTATTCTCT 58.182 43.478 0.00 0.00 39.43 3.10
327 328 3.370061 GCAAACTGGTGTACCGTATTCTC 59.630 47.826 0.00 0.00 39.43 2.87
328 329 3.007614 AGCAAACTGGTGTACCGTATTCT 59.992 43.478 0.00 0.00 39.43 2.40
329 330 3.332034 AGCAAACTGGTGTACCGTATTC 58.668 45.455 0.00 0.00 39.43 1.75
330 331 3.412237 AGCAAACTGGTGTACCGTATT 57.588 42.857 0.00 0.00 39.43 1.89
331 332 3.412237 AAGCAAACTGGTGTACCGTAT 57.588 42.857 0.00 0.00 39.43 3.06
332 333 2.873472 CAAAGCAAACTGGTGTACCGTA 59.127 45.455 0.00 0.00 39.43 4.02
333 334 1.673920 CAAAGCAAACTGGTGTACCGT 59.326 47.619 0.00 0.00 39.43 4.83
334 335 1.001815 CCAAAGCAAACTGGTGTACCG 60.002 52.381 0.00 0.00 39.43 4.02
335 336 1.339929 CCCAAAGCAAACTGGTGTACC 59.660 52.381 0.00 0.00 0.00 3.34
336 337 2.303175 TCCCAAAGCAAACTGGTGTAC 58.697 47.619 0.00 0.00 0.00 2.90
337 338 2.738587 TCCCAAAGCAAACTGGTGTA 57.261 45.000 0.00 0.00 0.00 2.90
338 339 1.688197 CATCCCAAAGCAAACTGGTGT 59.312 47.619 0.00 0.00 0.00 4.16
339 340 1.606224 GCATCCCAAAGCAAACTGGTG 60.606 52.381 0.00 0.00 0.00 4.17
340 341 0.681175 GCATCCCAAAGCAAACTGGT 59.319 50.000 0.00 0.00 0.00 4.00
341 342 0.680618 TGCATCCCAAAGCAAACTGG 59.319 50.000 0.00 0.00 37.90 4.00
342 343 1.068895 TGTGCATCCCAAAGCAAACTG 59.931 47.619 0.00 0.00 43.20 3.16
343 344 1.412079 TGTGCATCCCAAAGCAAACT 58.588 45.000 0.00 0.00 43.20 2.66
344 345 2.237393 TTGTGCATCCCAAAGCAAAC 57.763 45.000 0.00 0.00 43.20 2.93
345 346 2.104451 ACATTGTGCATCCCAAAGCAAA 59.896 40.909 0.00 0.00 43.20 3.68
346 347 1.693062 ACATTGTGCATCCCAAAGCAA 59.307 42.857 0.00 0.00 43.20 3.91
347 348 1.340088 ACATTGTGCATCCCAAAGCA 58.660 45.000 0.00 0.00 38.65 3.91
348 349 3.806625 ATACATTGTGCATCCCAAAGC 57.193 42.857 0.00 0.00 0.00 3.51
349 350 8.721019 AAATTTATACATTGTGCATCCCAAAG 57.279 30.769 0.00 0.00 0.00 2.77
350 351 8.944029 CAAAATTTATACATTGTGCATCCCAAA 58.056 29.630 0.00 0.00 0.00 3.28
351 352 7.551974 CCAAAATTTATACATTGTGCATCCCAA 59.448 33.333 0.00 0.00 0.00 4.12
352 353 7.046652 CCAAAATTTATACATTGTGCATCCCA 58.953 34.615 0.00 0.00 0.00 4.37
353 354 6.482973 CCCAAAATTTATACATTGTGCATCCC 59.517 38.462 0.00 0.00 0.00 3.85
354 355 6.482973 CCCCAAAATTTATACATTGTGCATCC 59.517 38.462 0.00 0.00 0.00 3.51
355 356 6.018016 GCCCCAAAATTTATACATTGTGCATC 60.018 38.462 0.00 0.00 0.00 3.91
356 357 5.821995 GCCCCAAAATTTATACATTGTGCAT 59.178 36.000 0.00 0.00 0.00 3.96
357 358 5.181748 GCCCCAAAATTTATACATTGTGCA 58.818 37.500 0.00 0.00 0.00 4.57
358 359 4.269844 CGCCCCAAAATTTATACATTGTGC 59.730 41.667 0.00 0.00 0.00 4.57
359 360 5.415221 ACGCCCCAAAATTTATACATTGTG 58.585 37.500 0.00 0.00 0.00 3.33
360 361 5.186021 TGACGCCCCAAAATTTATACATTGT 59.814 36.000 0.00 0.00 0.00 2.71
361 362 5.655488 TGACGCCCCAAAATTTATACATTG 58.345 37.500 0.00 0.00 0.00 2.82
362 363 5.923733 TGACGCCCCAAAATTTATACATT 57.076 34.783 0.00 0.00 0.00 2.71
363 364 5.923733 TTGACGCCCCAAAATTTATACAT 57.076 34.783 0.00 0.00 0.00 2.29
364 365 5.163499 GGATTGACGCCCCAAAATTTATACA 60.163 40.000 0.00 0.00 0.00 2.29
365 366 5.286438 GGATTGACGCCCCAAAATTTATAC 58.714 41.667 0.00 0.00 0.00 1.47
366 367 4.342665 GGGATTGACGCCCCAAAATTTATA 59.657 41.667 0.00 0.00 42.24 0.98
367 368 3.133901 GGGATTGACGCCCCAAAATTTAT 59.866 43.478 0.00 0.00 42.24 1.40
368 369 2.498078 GGGATTGACGCCCCAAAATTTA 59.502 45.455 0.00 0.00 42.24 1.40
369 370 1.277842 GGGATTGACGCCCCAAAATTT 59.722 47.619 0.00 0.00 42.24 1.82
370 371 0.901827 GGGATTGACGCCCCAAAATT 59.098 50.000 0.00 0.00 42.24 1.82
371 372 1.319614 CGGGATTGACGCCCCAAAAT 61.320 55.000 0.00 0.00 42.92 1.82
372 373 1.974343 CGGGATTGACGCCCCAAAA 60.974 57.895 0.00 0.00 42.92 2.44
373 374 2.360600 CGGGATTGACGCCCCAAA 60.361 61.111 0.00 0.00 42.92 3.28
374 375 3.323286 TCGGGATTGACGCCCCAA 61.323 61.111 0.00 0.00 42.92 4.12
375 376 3.781307 CTCGGGATTGACGCCCCA 61.781 66.667 0.00 0.00 42.92 4.96
376 377 3.782443 ACTCGGGATTGACGCCCC 61.782 66.667 0.00 0.00 42.92 5.80
377 378 2.511600 CACTCGGGATTGACGCCC 60.512 66.667 0.00 0.00 42.41 6.13
378 379 0.462047 ATTCACTCGGGATTGACGCC 60.462 55.000 0.00 0.00 0.00 5.68
379 380 0.652592 CATTCACTCGGGATTGACGC 59.347 55.000 0.00 0.00 0.00 5.19
380 381 2.010145 ACATTCACTCGGGATTGACG 57.990 50.000 0.00 0.00 0.00 4.35
381 382 2.348666 CGAACATTCACTCGGGATTGAC 59.651 50.000 0.00 0.00 0.00 3.18
382 383 2.616960 CGAACATTCACTCGGGATTGA 58.383 47.619 0.00 0.00 0.00 2.57
383 384 1.062587 GCGAACATTCACTCGGGATTG 59.937 52.381 0.00 0.00 35.60 2.67
384 385 1.066143 AGCGAACATTCACTCGGGATT 60.066 47.619 0.00 0.00 35.60 3.01
385 386 0.537188 AGCGAACATTCACTCGGGAT 59.463 50.000 0.00 0.00 35.60 3.85
386 387 0.389817 CAGCGAACATTCACTCGGGA 60.390 55.000 0.00 0.00 35.60 5.14
387 388 1.361668 CCAGCGAACATTCACTCGGG 61.362 60.000 0.00 0.00 35.60 5.14
388 389 1.361668 CCCAGCGAACATTCACTCGG 61.362 60.000 0.00 0.00 35.60 4.63
389 390 1.361668 CCCCAGCGAACATTCACTCG 61.362 60.000 0.00 0.00 38.11 4.18
390 391 1.026718 CCCCCAGCGAACATTCACTC 61.027 60.000 0.00 0.00 0.00 3.51
391 392 1.002134 CCCCCAGCGAACATTCACT 60.002 57.895 0.00 0.00 0.00 3.41
392 393 0.608035 TTCCCCCAGCGAACATTCAC 60.608 55.000 0.00 0.00 0.00 3.18
393 394 0.331278 ATTCCCCCAGCGAACATTCA 59.669 50.000 0.00 0.00 0.00 2.57
394 395 0.740737 CATTCCCCCAGCGAACATTC 59.259 55.000 0.00 0.00 0.00 2.67
395 396 0.039618 ACATTCCCCCAGCGAACATT 59.960 50.000 0.00 0.00 0.00 2.71
396 397 0.394352 GACATTCCCCCAGCGAACAT 60.394 55.000 0.00 0.00 0.00 2.71
397 398 1.002624 GACATTCCCCCAGCGAACA 60.003 57.895 0.00 0.00 0.00 3.18
398 399 0.394352 ATGACATTCCCCCAGCGAAC 60.394 55.000 0.00 0.00 0.00 3.95
399 400 0.331278 AATGACATTCCCCCAGCGAA 59.669 50.000 0.00 0.00 0.00 4.70
400 401 0.107214 GAATGACATTCCCCCAGCGA 60.107 55.000 16.06 0.00 33.17 4.93
401 402 0.394216 TGAATGACATTCCCCCAGCG 60.394 55.000 22.44 0.00 38.50 5.18
402 403 1.106285 GTGAATGACATTCCCCCAGC 58.894 55.000 22.44 0.41 38.50 4.85
403 404 1.065491 TCGTGAATGACATTCCCCCAG 60.065 52.381 22.44 10.94 38.50 4.45
404 405 0.988063 TCGTGAATGACATTCCCCCA 59.012 50.000 22.44 4.66 38.50 4.96
405 406 1.743394 GTTCGTGAATGACATTCCCCC 59.257 52.381 22.44 11.25 38.50 5.40
406 407 1.396996 CGTTCGTGAATGACATTCCCC 59.603 52.381 22.44 13.37 38.50 4.81
407 408 1.202031 GCGTTCGTGAATGACATTCCC 60.202 52.381 22.44 12.38 38.50 3.97
408 409 1.732259 AGCGTTCGTGAATGACATTCC 59.268 47.619 22.44 13.90 38.50 3.01
409 410 2.222819 GGAGCGTTCGTGAATGACATTC 60.223 50.000 19.39 19.39 39.70 2.67
410 411 1.732259 GGAGCGTTCGTGAATGACATT 59.268 47.619 0.00 0.00 0.00 2.71
411 412 1.359848 GGAGCGTTCGTGAATGACAT 58.640 50.000 6.01 0.00 0.00 3.06
412 413 1.006825 CGGAGCGTTCGTGAATGACA 61.007 55.000 6.01 0.00 0.00 3.58
413 414 1.007336 ACGGAGCGTTCGTGAATGAC 61.007 55.000 6.01 0.00 36.35 3.06
414 415 0.522626 TACGGAGCGTTCGTGAATGA 59.477 50.000 6.01 0.00 41.54 2.57
415 416 1.255342 CATACGGAGCGTTCGTGAATG 59.745 52.381 11.17 0.00 41.54 2.67
416 417 1.556564 CATACGGAGCGTTCGTGAAT 58.443 50.000 11.17 0.00 41.54 2.57
417 418 0.457166 CCATACGGAGCGTTCGTGAA 60.457 55.000 11.17 0.00 41.54 3.18
418 419 1.138036 CCATACGGAGCGTTCGTGA 59.862 57.895 11.17 0.00 41.54 4.35
419 420 2.514013 GCCATACGGAGCGTTCGTG 61.514 63.158 11.17 0.17 41.54 4.35
420 421 2.202703 GCCATACGGAGCGTTCGT 60.203 61.111 7.15 7.15 41.54 3.85
421 422 2.202690 TGCCATACGGAGCGTTCG 60.203 61.111 0.00 0.00 41.54 3.95
422 423 0.739813 AACTGCCATACGGAGCGTTC 60.740 55.000 0.00 0.00 41.54 3.95
423 424 0.321298 AAACTGCCATACGGAGCGTT 60.321 50.000 0.00 0.00 41.54 4.84
424 425 0.321298 AAAACTGCCATACGGAGCGT 60.321 50.000 0.00 0.00 44.35 5.07
425 426 0.096976 CAAAACTGCCATACGGAGCG 59.903 55.000 0.00 0.00 0.00 5.03
426 427 1.135689 CACAAAACTGCCATACGGAGC 60.136 52.381 0.00 0.00 0.00 4.70
427 428 1.135689 GCACAAAACTGCCATACGGAG 60.136 52.381 0.00 0.00 0.00 4.63
428 429 0.878416 GCACAAAACTGCCATACGGA 59.122 50.000 0.00 0.00 0.00 4.69
429 430 0.454285 CGCACAAAACTGCCATACGG 60.454 55.000 0.00 0.00 33.18 4.02
430 431 0.237235 ACGCACAAAACTGCCATACG 59.763 50.000 0.00 0.00 33.18 3.06
431 432 2.050691 CAACGCACAAAACTGCCATAC 58.949 47.619 0.00 0.00 33.18 2.39
432 433 1.000827 CCAACGCACAAAACTGCCATA 60.001 47.619 0.00 0.00 33.18 2.74
433 434 0.249405 CCAACGCACAAAACTGCCAT 60.249 50.000 0.00 0.00 33.18 4.40
434 435 1.140589 CCAACGCACAAAACTGCCA 59.859 52.632 0.00 0.00 33.18 4.92
435 436 1.591327 CCCAACGCACAAAACTGCC 60.591 57.895 0.00 0.00 33.18 4.85
436 437 0.382515 TACCCAACGCACAAAACTGC 59.617 50.000 0.00 0.00 0.00 4.40
437 438 1.001815 CCTACCCAACGCACAAAACTG 60.002 52.381 0.00 0.00 0.00 3.16
438 439 1.314730 CCTACCCAACGCACAAAACT 58.685 50.000 0.00 0.00 0.00 2.66
439 440 0.312729 CCCTACCCAACGCACAAAAC 59.687 55.000 0.00 0.00 0.00 2.43
440 441 1.457009 GCCCTACCCAACGCACAAAA 61.457 55.000 0.00 0.00 0.00 2.44
441 442 1.899534 GCCCTACCCAACGCACAAA 60.900 57.895 0.00 0.00 0.00 2.83
442 443 2.281900 GCCCTACCCAACGCACAA 60.282 61.111 0.00 0.00 0.00 3.33
443 444 3.246112 AGCCCTACCCAACGCACA 61.246 61.111 0.00 0.00 0.00 4.57
444 445 2.746277 CAGCCCTACCCAACGCAC 60.746 66.667 0.00 0.00 0.00 5.34
445 446 4.028490 CCAGCCCTACCCAACGCA 62.028 66.667 0.00 0.00 0.00 5.24
446 447 4.796495 CCCAGCCCTACCCAACGC 62.796 72.222 0.00 0.00 0.00 4.84
447 448 2.902457 AACCCAGCCCTACCCAACG 61.902 63.158 0.00 0.00 0.00 4.10
448 449 1.304134 CAACCCAGCCCTACCCAAC 60.304 63.158 0.00 0.00 0.00 3.77
449 450 2.543797 CCAACCCAGCCCTACCCAA 61.544 63.158 0.00 0.00 0.00 4.12
450 451 2.938798 CCAACCCAGCCCTACCCA 60.939 66.667 0.00 0.00 0.00 4.51
451 452 4.442454 GCCAACCCAGCCCTACCC 62.442 72.222 0.00 0.00 0.00 3.69
452 453 2.514516 AATGCCAACCCAGCCCTACC 62.515 60.000 0.00 0.00 0.00 3.18
453 454 0.614697 AAATGCCAACCCAGCCCTAC 60.615 55.000 0.00 0.00 0.00 3.18
454 455 0.116143 AAAATGCCAACCCAGCCCTA 59.884 50.000 0.00 0.00 0.00 3.53
455 456 1.152052 AAAATGCCAACCCAGCCCT 60.152 52.632 0.00 0.00 0.00 5.19
456 457 1.003476 CAAAATGCCAACCCAGCCC 60.003 57.895 0.00 0.00 0.00 5.19
457 458 0.972883 TACAAAATGCCAACCCAGCC 59.027 50.000 0.00 0.00 0.00 4.85
458 459 2.829741 TTACAAAATGCCAACCCAGC 57.170 45.000 0.00 0.00 0.00 4.85
459 460 4.702831 AGTTTTACAAAATGCCAACCCAG 58.297 39.130 0.00 0.00 0.00 4.45
460 461 4.762289 AGTTTTACAAAATGCCAACCCA 57.238 36.364 0.00 0.00 0.00 4.51
461 462 6.459923 TGATAGTTTTACAAAATGCCAACCC 58.540 36.000 0.00 0.00 0.00 4.11
462 463 7.064490 CCATGATAGTTTTACAAAATGCCAACC 59.936 37.037 0.00 0.00 0.00 3.77
463 464 7.412891 GCCATGATAGTTTTACAAAATGCCAAC 60.413 37.037 0.00 0.00 0.00 3.77
464 465 6.593382 GCCATGATAGTTTTACAAAATGCCAA 59.407 34.615 0.00 0.00 0.00 4.52
465 466 6.105333 GCCATGATAGTTTTACAAAATGCCA 58.895 36.000 0.00 0.00 0.00 4.92
466 467 6.105333 TGCCATGATAGTTTTACAAAATGCC 58.895 36.000 0.00 0.00 0.00 4.40
467 468 6.813152 ACTGCCATGATAGTTTTACAAAATGC 59.187 34.615 0.00 0.00 0.00 3.56
468 469 8.761575 AACTGCCATGATAGTTTTACAAAATG 57.238 30.769 8.26 0.00 33.59 2.32
469 470 9.206870 CAAACTGCCATGATAGTTTTACAAAAT 57.793 29.630 18.63 0.89 42.67 1.82
470 471 8.200792 ACAAACTGCCATGATAGTTTTACAAAA 58.799 29.630 18.63 0.00 42.67 2.44
471 472 7.721402 ACAAACTGCCATGATAGTTTTACAAA 58.279 30.769 18.63 0.00 42.67 2.83
472 473 7.283625 ACAAACTGCCATGATAGTTTTACAA 57.716 32.000 18.63 0.00 42.67 2.41
473 474 6.892658 ACAAACTGCCATGATAGTTTTACA 57.107 33.333 18.63 0.00 42.67 2.41
474 475 7.367285 TGAACAAACTGCCATGATAGTTTTAC 58.633 34.615 18.63 14.38 42.67 2.01
475 476 7.517614 TGAACAAACTGCCATGATAGTTTTA 57.482 32.000 18.63 8.18 42.67 1.52
476 477 6.403866 TGAACAAACTGCCATGATAGTTTT 57.596 33.333 18.63 10.00 42.67 2.43
477 478 6.403866 TTGAACAAACTGCCATGATAGTTT 57.596 33.333 16.63 16.63 45.25 2.66
478 479 6.403866 TTTGAACAAACTGCCATGATAGTT 57.596 33.333 8.26 8.26 38.70 2.24
479 480 6.594788 ATTTGAACAAACTGCCATGATAGT 57.405 33.333 0.00 0.00 32.51 2.12
480 481 6.869913 ACAATTTGAACAAACTGCCATGATAG 59.130 34.615 2.79 0.00 31.40 2.08
481 482 6.645827 CACAATTTGAACAAACTGCCATGATA 59.354 34.615 2.79 0.00 31.40 2.15
482 483 5.467399 CACAATTTGAACAAACTGCCATGAT 59.533 36.000 2.79 0.00 31.40 2.45
483 484 4.809958 CACAATTTGAACAAACTGCCATGA 59.190 37.500 2.79 0.00 31.40 3.07
484 485 4.553156 GCACAATTTGAACAAACTGCCATG 60.553 41.667 2.79 2.31 31.40 3.66
485 486 3.560896 GCACAATTTGAACAAACTGCCAT 59.439 39.130 2.79 0.00 31.40 4.40
486 487 2.935201 GCACAATTTGAACAAACTGCCA 59.065 40.909 2.79 0.00 31.40 4.92
487 488 2.033832 CGCACAATTTGAACAAACTGCC 60.034 45.455 2.79 0.95 31.40 4.85
488 489 2.033832 CCGCACAATTTGAACAAACTGC 60.034 45.455 2.79 10.72 31.40 4.40
489 490 3.186119 ACCGCACAATTTGAACAAACTG 58.814 40.909 2.79 7.09 34.13 3.16
490 491 3.518634 ACCGCACAATTTGAACAAACT 57.481 38.095 2.79 0.00 32.51 2.66
491 492 5.898630 ATAACCGCACAATTTGAACAAAC 57.101 34.783 2.79 0.00 32.51 2.93
492 493 6.910536 AAATAACCGCACAATTTGAACAAA 57.089 29.167 2.79 2.48 34.46 2.83
493 494 6.910536 AAAATAACCGCACAATTTGAACAA 57.089 29.167 2.79 0.00 0.00 2.83
494 495 6.910536 AAAAATAACCGCACAATTTGAACA 57.089 29.167 2.79 0.00 0.00 3.18
514 515 4.477780 GACGGTGACAGTTTTGTGAAAAA 58.522 39.130 0.00 0.00 37.76 1.94
515 516 3.425094 CGACGGTGACAGTTTTGTGAAAA 60.425 43.478 0.00 0.00 37.76 2.29
516 517 2.094575 CGACGGTGACAGTTTTGTGAAA 59.905 45.455 0.00 0.00 37.76 2.69
517 518 1.661617 CGACGGTGACAGTTTTGTGAA 59.338 47.619 0.00 0.00 37.76 3.18
518 519 1.282817 CGACGGTGACAGTTTTGTGA 58.717 50.000 0.00 0.00 37.76 3.58
519 520 0.303493 CCGACGGTGACAGTTTTGTG 59.697 55.000 5.48 0.00 37.76 3.33
520 521 0.176219 TCCGACGGTGACAGTTTTGT 59.824 50.000 14.79 0.00 41.18 2.83
521 522 1.194547 CATCCGACGGTGACAGTTTTG 59.805 52.381 14.79 0.00 0.00 2.44
522 523 1.508632 CATCCGACGGTGACAGTTTT 58.491 50.000 14.79 0.00 0.00 2.43
523 524 0.949105 GCATCCGACGGTGACAGTTT 60.949 55.000 14.79 0.00 0.00 2.66
524 525 1.374252 GCATCCGACGGTGACAGTT 60.374 57.895 14.79 0.00 0.00 3.16
525 526 2.261671 GCATCCGACGGTGACAGT 59.738 61.111 14.79 0.00 0.00 3.55
526 527 2.509336 GGCATCCGACGGTGACAG 60.509 66.667 14.79 1.83 0.00 3.51
542 543 2.341543 CCGGAGCCATCAGATCGG 59.658 66.667 0.00 0.00 0.00 4.18
543 544 2.341543 CCCGGAGCCATCAGATCG 59.658 66.667 0.73 0.00 0.00 3.69
544 545 1.838846 TCCCCGGAGCCATCAGATC 60.839 63.158 0.73 0.00 0.00 2.75
545 546 2.143419 GTCCCCGGAGCCATCAGAT 61.143 63.158 0.73 0.00 0.00 2.90
546 547 2.764128 GTCCCCGGAGCCATCAGA 60.764 66.667 0.73 0.00 0.00 3.27
547 548 1.987807 AATGTCCCCGGAGCCATCAG 61.988 60.000 0.73 0.00 0.00 2.90
548 549 1.983119 GAATGTCCCCGGAGCCATCA 61.983 60.000 0.73 0.00 0.00 3.07
549 550 1.227973 GAATGTCCCCGGAGCCATC 60.228 63.158 0.73 0.00 0.00 3.51
550 551 2.919043 GAATGTCCCCGGAGCCAT 59.081 61.111 0.73 0.00 0.00 4.40
551 552 3.781307 CGAATGTCCCCGGAGCCA 61.781 66.667 0.73 0.00 0.00 4.75
553 554 4.162690 AGCGAATGTCCCCGGAGC 62.163 66.667 0.73 0.00 0.00 4.70
554 555 2.202932 CAGCGAATGTCCCCGGAG 60.203 66.667 0.73 0.00 0.00 4.63
555 556 3.781307 CCAGCGAATGTCCCCGGA 61.781 66.667 0.73 0.00 0.00 5.14
556 557 4.856801 CCCAGCGAATGTCCCCGG 62.857 72.222 0.00 0.00 0.00 5.73
557 558 2.996168 GATCCCAGCGAATGTCCCCG 62.996 65.000 0.00 0.00 0.00 5.73
558 559 1.227973 GATCCCAGCGAATGTCCCC 60.228 63.158 0.00 0.00 0.00 4.81
559 560 1.227973 GGATCCCAGCGAATGTCCC 60.228 63.158 0.00 0.00 0.00 4.46
560 561 1.227973 GGGATCCCAGCGAATGTCC 60.228 63.158 26.95 0.00 35.81 4.02
561 562 1.526887 TGGGATCCCAGCGAATGTC 59.473 57.895 30.62 0.00 41.89 3.06
562 563 3.739922 TGGGATCCCAGCGAATGT 58.260 55.556 30.62 0.00 41.89 2.71
571 572 1.286305 TTTGCTAGGGGTGGGATCCC 61.286 60.000 25.22 25.22 46.31 3.85
572 573 0.106669 GTTTGCTAGGGGTGGGATCC 60.107 60.000 1.92 1.92 0.00 3.36
573 574 0.463833 CGTTTGCTAGGGGTGGGATC 60.464 60.000 0.00 0.00 0.00 3.36
574 575 1.205460 ACGTTTGCTAGGGGTGGGAT 61.205 55.000 0.00 0.00 0.00 3.85
575 576 1.420532 AACGTTTGCTAGGGGTGGGA 61.421 55.000 0.00 0.00 0.00 4.37
576 577 0.958876 GAACGTTTGCTAGGGGTGGG 60.959 60.000 0.46 0.00 0.00 4.61
577 578 1.296056 CGAACGTTTGCTAGGGGTGG 61.296 60.000 0.46 0.00 0.00 4.61
578 579 1.908066 GCGAACGTTTGCTAGGGGTG 61.908 60.000 29.32 0.11 34.69 4.61
579 580 1.670083 GCGAACGTTTGCTAGGGGT 60.670 57.895 29.32 0.00 34.69 4.95
580 581 2.396157 GGCGAACGTTTGCTAGGGG 61.396 63.158 33.36 5.14 37.71 4.79
581 582 1.635663 CTGGCGAACGTTTGCTAGGG 61.636 60.000 34.48 18.85 41.09 3.53
582 583 0.669318 TCTGGCGAACGTTTGCTAGG 60.669 55.000 38.12 26.84 43.89 3.02
583 584 1.359848 ATCTGGCGAACGTTTGCTAG 58.640 50.000 35.64 35.64 44.77 3.42
584 585 2.264813 GTATCTGGCGAACGTTTGCTA 58.735 47.619 33.36 28.49 37.71 3.49
585 586 1.076332 GTATCTGGCGAACGTTTGCT 58.924 50.000 33.36 19.82 37.71 3.91
586 587 0.793861 TGTATCTGGCGAACGTTTGC 59.206 50.000 28.87 28.87 36.84 3.68
587 588 3.740044 AATGTATCTGGCGAACGTTTG 57.260 42.857 11.39 11.39 0.00 2.93
588 589 4.759516 AAAATGTATCTGGCGAACGTTT 57.240 36.364 0.46 0.00 34.63 3.60
589 590 4.759516 AAAAATGTATCTGGCGAACGTT 57.240 36.364 0.00 0.00 0.00 3.99
615 616 8.943002 CGTCCCATTTCTTTACTATGTTAAACT 58.057 33.333 0.00 0.00 0.00 2.66
616 617 8.179615 CCGTCCCATTTCTTTACTATGTTAAAC 58.820 37.037 0.00 0.00 0.00 2.01
617 618 8.102047 TCCGTCCCATTTCTTTACTATGTTAAA 58.898 33.333 0.00 0.00 0.00 1.52
618 619 7.622713 TCCGTCCCATTTCTTTACTATGTTAA 58.377 34.615 0.00 0.00 0.00 2.01
619 620 7.185318 TCCGTCCCATTTCTTTACTATGTTA 57.815 36.000 0.00 0.00 0.00 2.41
620 621 6.057321 TCCGTCCCATTTCTTTACTATGTT 57.943 37.500 0.00 0.00 0.00 2.71
621 622 5.687166 TCCGTCCCATTTCTTTACTATGT 57.313 39.130 0.00 0.00 0.00 2.29
622 623 5.006358 CGTTCCGTCCCATTTCTTTACTATG 59.994 44.000 0.00 0.00 0.00 2.23
653 658 3.673484 CCGGCTGCAGGTTGGTTG 61.673 66.667 17.12 0.00 0.00 3.77
751 793 1.503818 TTCTTGTTGCGAAGACGGCC 61.504 55.000 0.00 0.00 40.15 6.13
760 802 1.261619 GACACCTGTCTTCTTGTTGCG 59.738 52.381 0.00 0.00 41.65 4.85
765 807 3.633361 GGGGACACCTGTCTTCTTG 57.367 57.895 5.44 0.00 44.20 3.02
831 913 0.322906 AGGCCAAGCTTAGCAGGAAC 60.323 55.000 18.62 10.21 0.00 3.62
846 929 1.348036 GATATGGGTGGTGACTAGGCC 59.652 57.143 0.00 0.00 0.00 5.19
983 1108 1.225704 GTGAGGCTTGATGGGGAGG 59.774 63.158 0.00 0.00 0.00 4.30
984 1109 1.153289 CGTGAGGCTTGATGGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
985 1110 2.989639 CGTGAGGCTTGATGGGGA 59.010 61.111 0.00 0.00 0.00 4.81
986 1111 2.825836 GCGTGAGGCTTGATGGGG 60.826 66.667 0.00 0.00 39.11 4.96
1038 1205 2.302952 CCTCGTGTGTGTGCGTGAG 61.303 63.158 0.00 0.00 0.00 3.51
1493 1737 1.219393 CTTCCTCTCGGTGAAGGCC 59.781 63.158 0.00 0.00 35.44 5.19
1497 1741 1.825474 CCTTAGCTTCCTCTCGGTGAA 59.175 52.381 0.00 0.00 0.00 3.18
1514 1758 3.637273 GCGAGGGTGGTGGACCTT 61.637 66.667 0.00 0.00 45.33 3.50
1559 1803 8.904834 TCTGTTCTATACTAGACTTGGATGAAC 58.095 37.037 0.00 12.80 33.84 3.18
1584 1829 0.302890 CAAACCGCGAGATGCTCATC 59.697 55.000 8.23 1.75 43.27 2.92
1586 1831 0.602638 AACAAACCGCGAGATGCTCA 60.603 50.000 8.23 0.00 43.27 4.26
1588 1833 0.238289 CAAACAAACCGCGAGATGCT 59.762 50.000 8.23 0.00 43.27 3.79
1589 1834 0.729140 CCAAACAAACCGCGAGATGC 60.729 55.000 8.23 0.00 41.47 3.91
1591 1836 1.862602 GCCCAAACAAACCGCGAGAT 61.863 55.000 8.23 0.00 0.00 2.75
1613 1875 3.859961 CAGTTAACACACCTAGCAGATCG 59.140 47.826 8.61 0.00 0.00 3.69
1676 1942 1.831106 CAAGCCCTGAATTAAACCCCC 59.169 52.381 0.00 0.00 0.00 5.40
1677 1943 1.831106 CCAAGCCCTGAATTAAACCCC 59.169 52.381 0.00 0.00 0.00 4.95
1678 1944 2.815158 TCCAAGCCCTGAATTAAACCC 58.185 47.619 0.00 0.00 0.00 4.11
1684 1950 1.767759 CCGAATCCAAGCCCTGAATT 58.232 50.000 0.00 0.00 0.00 2.17
1686 1952 1.378514 GCCGAATCCAAGCCCTGAA 60.379 57.895 0.00 0.00 0.00 3.02
1790 2224 5.181056 ACAACATAGTCATTGTCATTGCGAA 59.819 36.000 0.00 0.00 33.80 4.70
1791 2225 4.694982 ACAACATAGTCATTGTCATTGCGA 59.305 37.500 0.00 0.00 33.80 5.10
1792 2226 4.789629 CACAACATAGTCATTGTCATTGCG 59.210 41.667 0.00 0.00 36.92 4.85
1793 2227 5.702865 ACACAACATAGTCATTGTCATTGC 58.297 37.500 0.00 0.00 36.92 3.56
1845 2289 2.757868 GAGTAGATGAGCCAGTCACAGT 59.242 50.000 0.00 0.00 38.28 3.55
1850 2294 4.036734 CAGAAGAGAGTAGATGAGCCAGTC 59.963 50.000 0.00 0.00 0.00 3.51
1851 2295 3.953612 CAGAAGAGAGTAGATGAGCCAGT 59.046 47.826 0.00 0.00 0.00 4.00
1865 2310 7.441836 TGTATTGCTAACTTTGTCAGAAGAGA 58.558 34.615 0.00 0.00 0.00 3.10
1879 2324 5.967674 GCATCATGTGAACTGTATTGCTAAC 59.032 40.000 0.00 0.00 0.00 2.34
1948 2397 8.565896 TGTGAACTGTATTGCTAATTTCATCT 57.434 30.769 0.00 0.00 0.00 2.90
1951 2400 8.575589 ACATTGTGAACTGTATTGCTAATTTCA 58.424 29.630 0.00 0.00 0.00 2.69
2002 2454 3.745975 GCACAGTGTGAATTGTACTGCTA 59.254 43.478 27.37 0.00 44.22 3.49
2008 2460 3.745975 GTGCTAGCACAGTGTGAATTGTA 59.254 43.478 36.93 11.47 45.53 2.41
2045 2497 2.903784 ACTGTACATACTCCACCAGCAA 59.096 45.455 0.00 0.00 0.00 3.91
2056 2508 5.488341 ACTCCCAATTCACACTGTACATAC 58.512 41.667 0.00 0.00 0.00 2.39
2083 2535 6.128254 GGTGGAGAAAATTGCTACAAGTAGAC 60.128 42.308 11.25 3.61 35.21 2.59
2139 2593 4.467082 TGCTTGCCATAGGTCAATTTTGAT 59.533 37.500 0.00 0.00 39.73 2.57
2219 2674 3.810896 GCCCGTTAAAGCAGGCCG 61.811 66.667 0.00 0.00 39.60 6.13
2290 2761 2.108976 CCATGTCCGATCCACCCG 59.891 66.667 0.00 0.00 0.00 5.28
2300 2771 0.729116 CACTGACGATTGCCATGTCC 59.271 55.000 0.00 0.00 0.00 4.02
2301 2772 0.097674 GCACTGACGATTGCCATGTC 59.902 55.000 0.00 0.00 32.21 3.06
2302 2773 0.321919 AGCACTGACGATTGCCATGT 60.322 50.000 0.00 0.00 39.75 3.21
2303 2774 1.328680 GTAGCACTGACGATTGCCATG 59.671 52.381 0.00 0.00 39.75 3.66
2304 2775 1.656652 GTAGCACTGACGATTGCCAT 58.343 50.000 0.00 0.00 39.75 4.40
2305 2776 0.735978 CGTAGCACTGACGATTGCCA 60.736 55.000 0.00 0.00 42.98 4.92
2306 2777 1.421410 CCGTAGCACTGACGATTGCC 61.421 60.000 0.00 0.00 42.98 4.52
2352 2823 1.571215 GGCAGTTACCGGAAACCGTG 61.571 60.000 9.46 0.00 46.80 4.94
2558 3105 3.498927 ACAAGAAATCCGTCGACGTAT 57.501 42.857 33.49 23.17 37.74 3.06
2559 3106 2.995466 ACAAGAAATCCGTCGACGTA 57.005 45.000 33.49 21.83 37.74 3.57
2560 3107 2.144482 AACAAGAAATCCGTCGACGT 57.856 45.000 33.49 17.59 37.74 4.34
2561 3108 3.515071 AAAACAAGAAATCCGTCGACG 57.485 42.857 30.33 30.33 39.44 5.12
2579 3126 5.433855 CGTCGACGTATTCCTTTTCAAAAA 58.566 37.500 29.08 0.00 34.11 1.94
2580 3127 4.084433 CCGTCGACGTATTCCTTTTCAAAA 60.084 41.667 33.49 0.00 37.74 2.44
2581 3128 3.429543 CCGTCGACGTATTCCTTTTCAAA 59.570 43.478 33.49 0.00 37.74 2.69
2582 3129 2.988493 CCGTCGACGTATTCCTTTTCAA 59.012 45.455 33.49 0.00 37.74 2.69
2583 3130 2.228582 TCCGTCGACGTATTCCTTTTCA 59.771 45.455 33.49 2.63 37.74 2.69
2584 3131 2.867429 TCCGTCGACGTATTCCTTTTC 58.133 47.619 33.49 0.00 37.74 2.29
2585 3132 3.119388 TCATCCGTCGACGTATTCCTTTT 60.119 43.478 33.49 0.60 37.74 2.27
2586 3133 2.424601 TCATCCGTCGACGTATTCCTTT 59.575 45.455 33.49 1.39 37.74 3.11
2587 3134 2.019249 TCATCCGTCGACGTATTCCTT 58.981 47.619 33.49 2.19 37.74 3.36
2588 3135 1.671979 TCATCCGTCGACGTATTCCT 58.328 50.000 33.49 10.69 37.74 3.36
2589 3136 2.582687 GATCATCCGTCGACGTATTCC 58.417 52.381 33.49 15.68 37.74 3.01
2590 3137 2.096565 TCGATCATCCGTCGACGTATTC 60.097 50.000 33.49 18.82 42.57 1.75
2720 3267 2.271497 GCCATCTCAGCTGCAGGT 59.729 61.111 13.85 13.85 0.00 4.00
2795 3345 4.557605 CCGGGCGCATGCATTGAC 62.558 66.667 19.57 3.01 45.35 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.