Multiple sequence alignment - TraesCS3A01G390100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G390100 chr3A 100.000 5108 0 0 1 5108 638329857 638324750 0.000000e+00 9433.0
1 TraesCS3A01G390100 chr3A 95.035 141 7 0 4968 5108 375759746 375759606 6.660000e-54 222.0
2 TraesCS3A01G390100 chr3A 93.151 146 10 0 4963 5108 154576183 154576328 1.110000e-51 215.0
3 TraesCS3A01G390100 chr3D 94.428 4289 141 43 299 4518 496503481 496507740 0.000000e+00 6506.0
4 TraesCS3A01G390100 chr3D 90.769 195 11 4 4743 4936 14382826 14383014 2.360000e-63 254.0
5 TraesCS3A01G390100 chr3D 90.769 195 11 3 4743 4936 138013000 138013188 2.360000e-63 254.0
6 TraesCS3A01G390100 chr3D 95.205 146 4 3 110 255 496503342 496503484 1.430000e-55 228.0
7 TraesCS3A01G390100 chr3D 90.728 151 14 0 2 152 340340397 340340247 8.670000e-48 202.0
8 TraesCS3A01G390100 chr3D 95.556 45 2 0 4515 4559 496508175 496508219 7.090000e-09 73.1
9 TraesCS3A01G390100 chr3B 94.506 4259 157 28 305 4518 655435212 655439438 0.000000e+00 6497.0
10 TraesCS3A01G390100 chr3B 94.167 120 4 2 148 267 655435091 655435207 4.060000e-41 180.0
11 TraesCS3A01G390100 chr2D 91.878 197 9 2 4743 4938 641007685 641007495 8.430000e-68 268.0
12 TraesCS3A01G390100 chr4B 90.909 198 11 2 4742 4938 63795162 63795353 5.070000e-65 259.0
13 TraesCS3A01G390100 chr4B 90.404 198 12 2 4743 4939 92957826 92958017 2.360000e-63 254.0
14 TraesCS3A01G390100 chr4B 91.391 151 13 0 2 152 112038289 112038139 1.860000e-49 207.0
15 TraesCS3A01G390100 chr7B 90.404 198 12 2 4743 4939 745408326 745408517 2.360000e-63 254.0
16 TraesCS3A01G390100 chr7B 92.105 152 12 0 2 153 322488534 322488685 1.110000e-51 215.0
17 TraesCS3A01G390100 chr6B 90.000 200 12 3 4743 4940 684141308 684141115 8.490000e-63 252.0
18 TraesCS3A01G390100 chr6D 89.216 204 16 5 4739 4939 242264142 242264342 3.050000e-62 250.0
19 TraesCS3A01G390100 chr6D 92.763 152 11 0 2 153 348087777 348087626 2.390000e-53 220.0
20 TraesCS3A01G390100 chr6D 91.837 147 12 0 2 148 445836655 445836801 6.700000e-49 206.0
21 TraesCS3A01G390100 chr6D 88.889 153 16 1 1 153 293497278 293497429 2.430000e-43 187.0
22 TraesCS3A01G390100 chr4D 89.604 202 13 4 4739 4939 173288143 173288337 3.050000e-62 250.0
23 TraesCS3A01G390100 chr4D 91.447 152 13 0 2 153 145579684 145579533 5.180000e-50 209.0
24 TraesCS3A01G390100 chr4D 88.000 150 16 1 4 153 9306201 9306348 5.260000e-40 176.0
25 TraesCS3A01G390100 chr4D 86.275 153 19 2 2 153 482161548 482161699 1.140000e-36 165.0
26 TraesCS3A01G390100 chr5A 95.745 141 6 0 4968 5108 523082372 523082232 1.430000e-55 228.0
27 TraesCS3A01G390100 chr5A 95.035 141 7 0 4968 5108 222739529 222739669 6.660000e-54 222.0
28 TraesCS3A01G390100 chr5A 95.000 140 7 0 4968 5107 174447895 174447756 2.390000e-53 220.0
29 TraesCS3A01G390100 chr6A 95.714 140 6 0 4968 5107 371809516 371809655 5.150000e-55 226.0
30 TraesCS3A01G390100 chr6A 92.617 149 11 0 4960 5108 431686593 431686741 1.110000e-51 215.0
31 TraesCS3A01G390100 chr6A 87.500 152 19 0 2 153 427085832 427085681 5.260000e-40 176.0
32 TraesCS3A01G390100 chr5B 93.421 152 10 0 2 153 447183415 447183264 5.150000e-55 226.0
33 TraesCS3A01G390100 chr5B 92.715 151 11 0 1 151 314297290 314297440 8.610000e-53 219.0
34 TraesCS3A01G390100 chr5B 92.105 152 12 0 2 153 446430526 446430677 1.110000e-51 215.0
35 TraesCS3A01G390100 chr5B 91.946 149 12 0 5 153 86241184 86241036 5.180000e-50 209.0
36 TraesCS3A01G390100 chr4A 94.444 144 7 1 4966 5108 344979136 344978993 2.390000e-53 220.0
37 TraesCS3A01G390100 chr1A 94.406 143 7 1 4967 5108 350706138 350705996 8.610000e-53 219.0
38 TraesCS3A01G390100 chr1A 90.210 143 14 0 11 153 495324297 495324155 2.430000e-43 187.0
39 TraesCS3A01G390100 chr1A 88.158 152 18 0 2 153 63748182 63748333 1.130000e-41 182.0
40 TraesCS3A01G390100 chr1A 87.500 160 12 6 1 153 568073736 568073894 1.460000e-40 178.0
41 TraesCS3A01G390100 chr1D 92.053 151 12 0 2 152 465131063 465130913 4.010000e-51 213.0
42 TraesCS3A01G390100 chr7D 91.447 152 13 0 2 153 363048746 363048897 5.180000e-50 209.0
43 TraesCS3A01G390100 chr7D 90.850 153 14 0 1 153 527975834 527975986 6.700000e-49 206.0
44 TraesCS3A01G390100 chr5D 91.447 152 11 1 2 153 42084278 42084129 1.860000e-49 207.0
45 TraesCS3A01G390100 chr5D 89.103 156 15 1 1 154 518863960 518864115 5.220000e-45 193.0
46 TraesCS3A01G390100 chrUn 87.500 152 18 1 2 153 244919064 244918914 1.890000e-39 174.0
47 TraesCS3A01G390100 chrUn 87.500 152 18 1 2 153 285315081 285314931 1.890000e-39 174.0
48 TraesCS3A01G390100 chrUn 87.500 152 18 1 2 153 295401437 295401587 1.890000e-39 174.0
49 TraesCS3A01G390100 chrUn 87.500 152 18 1 2 153 306005639 306005789 1.890000e-39 174.0
50 TraesCS3A01G390100 chrUn 84.314 153 24 0 2 154 47510775 47510927 3.190000e-32 150.0
51 TraesCS3A01G390100 chrUn 86.614 127 16 1 2 127 35172706 35172832 6.900000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G390100 chr3A 638324750 638329857 5107 True 9433.000000 9433 100.0000 1 5108 1 chr3A.!!$R2 5107
1 TraesCS3A01G390100 chr3D 496503342 496508219 4877 False 2269.033333 6506 95.0630 110 4559 3 chr3D.!!$F3 4449
2 TraesCS3A01G390100 chr3B 655435091 655439438 4347 False 3338.500000 6497 94.3365 148 4518 2 chr3B.!!$F1 4370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 836 0.400594 ATCCATTAGGCGGTTAGGGC 59.599 55.0 0.0 0.0 33.74 5.19 F
1585 1623 0.107017 ATGCCATCTCCCAAAGACCG 60.107 55.0 0.0 0.0 36.65 4.79 F
3178 3242 0.823769 TCATCCCCGTCATCCTCTCG 60.824 60.0 0.0 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2093 1.615883 CAGGTGATGAGATCCCTACGG 59.384 57.143 0.0 0.0 31.47 4.02 R
3355 3419 1.216710 CTTGGAGACGAGCAGGACC 59.783 63.158 0.0 0.0 34.36 4.46 R
4932 5460 0.033642 GCGTATCCTGACCCTTAGGC 59.966 60.000 0.0 0.0 36.11 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.198837 TGTGAAAATATATGCAATGATGAATGC 57.801 29.630 0.00 0.00 42.86 3.56
70 71 6.223138 GCAATGATGAATGCAATGGTATTG 57.777 37.500 0.00 0.00 42.12 1.90
71 72 5.986741 GCAATGATGAATGCAATGGTATTGA 59.013 36.000 13.58 0.00 42.12 2.57
72 73 6.649141 GCAATGATGAATGCAATGGTATTGAT 59.351 34.615 13.58 0.00 42.12 2.57
73 74 7.172532 GCAATGATGAATGCAATGGTATTGATT 59.827 33.333 13.58 3.29 42.12 2.57
74 75 9.051679 CAATGATGAATGCAATGGTATTGATTT 57.948 29.630 5.77 0.00 28.83 2.17
75 76 8.601845 ATGATGAATGCAATGGTATTGATTTG 57.398 30.769 5.77 0.00 28.83 2.32
76 77 6.987404 TGATGAATGCAATGGTATTGATTTGG 59.013 34.615 5.77 0.00 28.83 3.28
77 78 6.297080 TGAATGCAATGGTATTGATTTGGT 57.703 33.333 5.77 0.00 28.83 3.67
78 79 6.107343 TGAATGCAATGGTATTGATTTGGTG 58.893 36.000 5.77 0.00 28.83 4.17
79 80 4.468765 TGCAATGGTATTGATTTGGTGG 57.531 40.909 5.77 0.00 0.00 4.61
80 81 3.837146 TGCAATGGTATTGATTTGGTGGT 59.163 39.130 5.77 0.00 0.00 4.16
81 82 4.183101 GCAATGGTATTGATTTGGTGGTG 58.817 43.478 5.77 0.00 0.00 4.17
82 83 4.322650 GCAATGGTATTGATTTGGTGGTGT 60.323 41.667 5.77 0.00 0.00 4.16
83 84 5.105554 GCAATGGTATTGATTTGGTGGTGTA 60.106 40.000 5.77 0.00 0.00 2.90
84 85 6.406849 GCAATGGTATTGATTTGGTGGTGTAT 60.407 38.462 5.77 0.00 0.00 2.29
85 86 7.201866 GCAATGGTATTGATTTGGTGGTGTATA 60.202 37.037 5.77 0.00 0.00 1.47
86 87 8.859090 CAATGGTATTGATTTGGTGGTGTATAT 58.141 33.333 0.00 0.00 0.00 0.86
87 88 7.815840 TGGTATTGATTTGGTGGTGTATATG 57.184 36.000 0.00 0.00 0.00 1.78
88 89 7.350382 TGGTATTGATTTGGTGGTGTATATGT 58.650 34.615 0.00 0.00 0.00 2.29
89 90 7.836685 TGGTATTGATTTGGTGGTGTATATGTT 59.163 33.333 0.00 0.00 0.00 2.71
90 91 9.344772 GGTATTGATTTGGTGGTGTATATGTTA 57.655 33.333 0.00 0.00 0.00 2.41
121 122 6.833342 TTTCTACGAACTGGTTGAAAGTAC 57.167 37.500 0.00 0.00 36.96 2.73
127 128 7.186021 ACGAACTGGTTGAAAGTACATAAAG 57.814 36.000 0.00 0.00 0.00 1.85
271 273 9.646427 TTACTGTCAAGTAAAAACAAAATGCTT 57.354 25.926 0.00 0.00 44.18 3.91
272 274 8.185003 ACTGTCAAGTAAAAACAAAATGCTTC 57.815 30.769 0.00 0.00 33.79 3.86
273 275 7.816995 ACTGTCAAGTAAAAACAAAATGCTTCA 59.183 29.630 0.00 0.00 33.79 3.02
274 276 8.183830 TGTCAAGTAAAAACAAAATGCTTCAG 57.816 30.769 0.00 0.00 0.00 3.02
275 277 7.816995 TGTCAAGTAAAAACAAAATGCTTCAGT 59.183 29.630 0.00 0.00 0.00 3.41
276 278 8.655970 GTCAAGTAAAAACAAAATGCTTCAGTT 58.344 29.630 0.00 0.00 0.00 3.16
277 279 9.213799 TCAAGTAAAAACAAAATGCTTCAGTTT 57.786 25.926 0.00 0.00 31.76 2.66
278 280 9.824534 CAAGTAAAAACAAAATGCTTCAGTTTT 57.175 25.926 0.00 0.00 42.29 2.43
504 519 1.529010 GGAACAAAATCGATCGCCACG 60.529 52.381 11.09 0.00 0.00 4.94
505 520 0.446222 AACAAAATCGATCGCCACGG 59.554 50.000 11.09 2.28 0.00 4.94
541 564 2.338015 CGTTCCTCTCCGACCCGAA 61.338 63.158 0.00 0.00 0.00 4.30
598 621 1.747924 CTCAACCAGCATCTCTCTCGA 59.252 52.381 0.00 0.00 0.00 4.04
599 622 2.361757 CTCAACCAGCATCTCTCTCGAT 59.638 50.000 0.00 0.00 0.00 3.59
600 623 2.360483 TCAACCAGCATCTCTCTCGATC 59.640 50.000 0.00 0.00 0.00 3.69
601 624 0.950836 ACCAGCATCTCTCTCGATCG 59.049 55.000 9.36 9.36 0.00 3.69
699 722 4.020617 CAGGCGCTGGTCCTTCCA 62.021 66.667 7.64 0.00 45.01 3.53
702 725 4.021925 GCGCTGGTCCTTCCACCT 62.022 66.667 0.00 0.00 41.93 4.00
703 726 2.046892 CGCTGGTCCTTCCACCTG 60.047 66.667 0.00 0.00 41.93 4.00
705 728 1.761174 GCTGGTCCTTCCACCTGAA 59.239 57.895 1.02 0.00 41.93 3.02
729 754 1.490693 CGATCCGGCCAATCTGTTCG 61.491 60.000 2.24 0.00 0.00 3.95
811 836 0.400594 ATCCATTAGGCGGTTAGGGC 59.599 55.000 0.00 0.00 33.74 5.19
867 898 5.713822 ACGAAGCCAGATACGTTTAATTC 57.286 39.130 0.00 0.00 35.47 2.17
868 899 4.569564 ACGAAGCCAGATACGTTTAATTCC 59.430 41.667 0.00 0.00 35.47 3.01
951 982 2.568912 GAGGATCGAAGAACGCGCG 61.569 63.158 30.96 30.96 43.58 6.86
976 1007 5.461078 GCGCGTTTGATTAGATTAGGTTAGA 59.539 40.000 8.43 0.00 0.00 2.10
1018 1051 2.442413 CCATGGCTAAACGGGAGAAAA 58.558 47.619 0.00 0.00 0.00 2.29
1045 1078 3.762247 TACGCCCCGTACCTGCAC 61.762 66.667 0.00 0.00 41.54 4.57
1067 1100 2.683465 TACCCGTACCCGAGGCTCT 61.683 63.158 13.50 0.00 35.63 4.09
1292 1325 1.340211 CCCTATCTACCGCGATCCTCT 60.340 57.143 8.23 0.00 0.00 3.69
1296 1329 1.022735 TCTACCGCGATCCTCTGAAC 58.977 55.000 8.23 0.00 0.00 3.18
1327 1361 9.074576 TCCTAAATTCTGTACTAATCTGCGATA 57.925 33.333 0.00 0.00 0.00 2.92
1331 1365 9.632807 AAATTCTGTACTAATCTGCGATAGATC 57.367 33.333 3.50 0.00 45.41 2.75
1363 1397 2.121786 GAGAACGACGTGTACAAGCAA 58.878 47.619 8.83 0.00 0.00 3.91
1456 1490 0.806492 GATCCTTCGTTGGCCTCGTC 60.806 60.000 17.35 6.72 0.00 4.20
1545 1579 2.236644 TGCGGCAAAACAGGTATACCTA 59.763 45.455 24.15 1.73 46.65 3.08
1547 1581 3.680754 GCGGCAAAACAGGTATACCTAGT 60.681 47.826 24.15 19.71 46.65 2.57
1585 1623 0.107017 ATGCCATCTCCCAAAGACCG 60.107 55.000 0.00 0.00 36.65 4.79
1610 1648 2.587194 GCACGGCGCATCATCTCT 60.587 61.111 10.83 0.00 41.79 3.10
1616 1654 1.468908 CGGCGCATCATCTCTATCTCC 60.469 57.143 10.83 0.00 0.00 3.71
1635 1673 1.303643 GTGGCTTCAGGAACCTGGG 60.304 63.158 18.99 13.46 43.75 4.45
1708 1746 1.571919 CGATTTGCGCCTACTTAGCT 58.428 50.000 4.18 0.00 0.00 3.32
1848 1886 1.135315 CACTGCCAATGGATGTTTCGG 60.135 52.381 2.05 0.00 0.00 4.30
2052 2093 2.418983 ACTTCAAGAACGACCTCGAC 57.581 50.000 0.78 0.00 43.02 4.20
2159 2200 3.751518 AGGAAGCAACGACTTGGTAAAT 58.248 40.909 0.00 0.00 37.11 1.40
2247 2309 4.280677 TGTTTATTCCTTGGGAAAGTGCAG 59.719 41.667 3.01 0.00 45.41 4.41
2300 2362 3.877559 TCATCTGTCACATGGAATCACC 58.122 45.455 0.00 0.00 39.54 4.02
2358 2420 7.438757 TCACATTGAACTGTGGAATGAAATTTG 59.561 33.333 15.28 6.30 45.29 2.32
2360 2422 8.420222 ACATTGAACTGTGGAATGAAATTTGTA 58.580 29.630 15.28 0.00 36.07 2.41
2366 2428 5.000591 TGTGGAATGAAATTTGTAGCGAGA 58.999 37.500 0.00 0.00 36.07 4.04
2368 2430 6.183360 TGTGGAATGAAATTTGTAGCGAGATC 60.183 38.462 0.00 0.00 36.07 2.75
2373 2435 8.902040 AATGAAATTTGTAGCGAGATCTTTTC 57.098 30.769 0.00 0.27 26.74 2.29
2374 2436 7.433708 TGAAATTTGTAGCGAGATCTTTTCA 57.566 32.000 8.60 8.60 0.00 2.69
2375 2437 7.870826 TGAAATTTGTAGCGAGATCTTTTCAA 58.129 30.769 9.78 4.23 30.23 2.69
2741 2805 7.217906 AGTAATCTTCATCCGAATTAACCTCC 58.782 38.462 0.00 0.00 0.00 4.30
2795 2859 3.693085 CAGGAAGTTGGATCACTGAATGG 59.307 47.826 0.00 0.00 0.00 3.16
3178 3242 0.823769 TCATCCCCGTCATCCTCTCG 60.824 60.000 0.00 0.00 0.00 4.04
3328 3392 1.078848 GCTGGAGCTCACCAACGAT 60.079 57.895 17.19 0.00 39.59 3.73
3355 3419 3.023118 CTGCCGCTCATCATGCTG 58.977 61.111 0.00 0.00 0.00 4.41
3403 3467 1.166531 ACTGCTTCAACAAGGGCGTC 61.167 55.000 0.00 0.00 0.00 5.19
3580 3644 4.589675 GGCCACAACGGGTTCCCA 62.590 66.667 8.70 0.00 34.06 4.37
3732 3796 2.694760 GCAAGCTCAAGCCCTTCGG 61.695 63.158 0.00 0.00 43.38 4.30
3955 4019 0.391263 CCGGGGTAAGAACTCACTGC 60.391 60.000 0.00 0.00 0.00 4.40
3984 4048 1.802508 GCCATTACTTGCCGCCATTTC 60.803 52.381 0.00 0.00 0.00 2.17
3991 4055 1.334869 CTTGCCGCCATTTCTACCATC 59.665 52.381 0.00 0.00 0.00 3.51
4007 4071 3.649277 ATCCTCTGACCACGCGTGC 62.649 63.158 33.17 20.85 0.00 5.34
4050 4114 4.899239 CTGGGGATCCTGACGCGC 62.899 72.222 12.58 0.00 34.32 6.86
4154 4219 7.425915 TTGCATATATTTTACGCACGTTTTC 57.574 32.000 0.00 0.00 31.10 2.29
4157 4222 7.751348 TGCATATATTTTACGCACGTTTTCTTT 59.249 29.630 0.00 0.00 0.00 2.52
4158 4223 8.580431 GCATATATTTTACGCACGTTTTCTTTT 58.420 29.630 0.00 0.00 0.00 2.27
4255 4325 4.969359 AGTCCCTTAGCTATTTTAGGCTCA 59.031 41.667 3.94 0.00 39.65 4.26
4256 4326 5.057819 GTCCCTTAGCTATTTTAGGCTCAC 58.942 45.833 3.94 0.00 39.65 3.51
4257 4327 4.969359 TCCCTTAGCTATTTTAGGCTCACT 59.031 41.667 3.94 0.00 39.65 3.41
4258 4328 5.428783 TCCCTTAGCTATTTTAGGCTCACTT 59.571 40.000 3.94 0.00 39.65 3.16
4287 4357 0.670546 CCGCGAAGAAGTGGTGTGAT 60.671 55.000 8.23 0.00 37.04 3.06
4310 4380 6.302535 TCGACCCTGAATTAGTGGATTTTA 57.697 37.500 0.00 0.00 0.00 1.52
4346 4416 7.126726 AGCAAATCATCGATAATTAGTGCTC 57.873 36.000 12.74 0.00 33.54 4.26
4379 4463 3.276857 GGCATGCCTGATATCGATTGAT 58.723 45.455 29.98 0.02 38.67 2.57
4403 4487 2.674852 CCATTGTCAACTCCGTGATGAG 59.325 50.000 0.00 0.00 38.37 2.90
4430 4514 1.874019 CGTTGACCGAGAGCCATCG 60.874 63.158 1.32 1.32 42.36 3.84
4440 4524 1.815421 GAGCCATCGTTGTCGCCAT 60.815 57.895 0.00 0.00 36.96 4.40
4447 4531 3.500982 CATCGTTGTCGCCATGATTTTT 58.499 40.909 0.00 0.00 36.96 1.94
4448 4532 3.196007 TCGTTGTCGCCATGATTTTTC 57.804 42.857 0.00 0.00 36.96 2.29
4462 4546 8.651588 GCCATGATTTTTCACTACGATCTATAG 58.348 37.037 0.00 0.00 0.00 1.31
4553 5081 1.702182 TGAATTGCTTGCTTCCCACA 58.298 45.000 0.00 0.00 0.00 4.17
4559 5087 3.240606 CTTGCTTCCCACACACGCG 62.241 63.158 3.53 3.53 0.00 6.01
4562 5090 4.012895 CTTCCCACACACGCGCAC 62.013 66.667 5.73 0.00 0.00 5.34
4563 5091 4.840005 TTCCCACACACGCGCACA 62.840 61.111 5.73 0.00 0.00 4.57
4566 5094 4.589700 CCACACACGCGCACACAC 62.590 66.667 5.73 0.00 0.00 3.82
4567 5095 3.858989 CACACACGCGCACACACA 61.859 61.111 5.73 0.00 0.00 3.72
4568 5096 3.860125 ACACACGCGCACACACAC 61.860 61.111 5.73 0.00 0.00 3.82
4569 5097 3.858989 CACACGCGCACACACACA 61.859 61.111 5.73 0.00 0.00 3.72
4570 5098 3.860125 ACACGCGCACACACACAC 61.860 61.111 5.73 0.00 0.00 3.82
4571 5099 3.858989 CACGCGCACACACACACA 61.859 61.111 5.73 0.00 0.00 3.72
4572 5100 3.121676 ACGCGCACACACACACAA 61.122 55.556 5.73 0.00 0.00 3.33
4573 5101 2.099254 CGCGCACACACACACAAA 59.901 55.556 8.75 0.00 0.00 2.83
4574 5102 1.512947 CGCGCACACACACACAAAA 60.513 52.632 8.75 0.00 0.00 2.44
4575 5103 1.067743 CGCGCACACACACACAAAAA 61.068 50.000 8.75 0.00 0.00 1.94
4598 5126 7.449934 AAAAATTGCGTGAACAAAGTCTAAG 57.550 32.000 0.00 0.00 32.27 2.18
4599 5127 5.751243 AATTGCGTGAACAAAGTCTAAGT 57.249 34.783 0.00 0.00 32.27 2.24
4600 5128 5.751243 ATTGCGTGAACAAAGTCTAAGTT 57.249 34.783 0.00 0.00 32.27 2.66
4601 5129 4.789095 TGCGTGAACAAAGTCTAAGTTC 57.211 40.909 9.34 9.34 41.42 3.01
4602 5130 4.185394 TGCGTGAACAAAGTCTAAGTTCA 58.815 39.130 13.24 13.24 46.53 3.18
4608 5136 7.915293 TGAACAAAGTCTAAGTTCAGACAAA 57.085 32.000 13.24 0.00 46.15 2.83
4609 5137 8.330466 TGAACAAAGTCTAAGTTCAGACAAAA 57.670 30.769 13.24 0.00 46.15 2.44
4610 5138 8.450964 TGAACAAAGTCTAAGTTCAGACAAAAG 58.549 33.333 13.24 0.00 46.15 2.27
4611 5139 8.561738 AACAAAGTCTAAGTTCAGACAAAAGA 57.438 30.769 6.08 0.00 46.15 2.52
4612 5140 8.202745 ACAAAGTCTAAGTTCAGACAAAAGAG 57.797 34.615 6.08 0.00 46.15 2.85
4613 5141 8.041323 ACAAAGTCTAAGTTCAGACAAAAGAGA 58.959 33.333 6.08 0.00 46.15 3.10
4614 5142 9.050601 CAAAGTCTAAGTTCAGACAAAAGAGAT 57.949 33.333 6.08 0.00 46.15 2.75
4615 5143 9.620259 AAAGTCTAAGTTCAGACAAAAGAGATT 57.380 29.630 6.08 0.00 46.15 2.40
4616 5144 8.600449 AGTCTAAGTTCAGACAAAAGAGATTG 57.400 34.615 6.08 0.00 46.15 2.67
4617 5145 8.207545 AGTCTAAGTTCAGACAAAAGAGATTGT 58.792 33.333 6.08 0.00 46.15 2.71
4618 5146 8.831550 GTCTAAGTTCAGACAAAAGAGATTGTT 58.168 33.333 0.00 0.00 43.31 2.83
4619 5147 8.830580 TCTAAGTTCAGACAAAAGAGATTGTTG 58.169 33.333 0.00 0.00 43.31 3.33
4620 5148 7.630242 AAGTTCAGACAAAAGAGATTGTTGA 57.370 32.000 0.00 0.00 43.31 3.18
4621 5149 7.020914 AGTTCAGACAAAAGAGATTGTTGAC 57.979 36.000 0.00 0.00 43.31 3.18
4622 5150 6.599244 AGTTCAGACAAAAGAGATTGTTGACA 59.401 34.615 0.00 0.00 43.31 3.58
4623 5151 7.121168 AGTTCAGACAAAAGAGATTGTTGACAA 59.879 33.333 0.00 0.00 43.31 3.18
4624 5152 7.389803 TCAGACAAAAGAGATTGTTGACAAA 57.610 32.000 0.10 0.00 43.31 2.83
4625 5153 7.999679 TCAGACAAAAGAGATTGTTGACAAAT 58.000 30.769 0.10 0.00 43.31 2.32
4626 5154 8.469200 TCAGACAAAAGAGATTGTTGACAAATT 58.531 29.630 0.10 0.00 43.31 1.82
4627 5155 9.734620 CAGACAAAAGAGATTGTTGACAAATTA 57.265 29.630 0.10 0.00 43.31 1.40
4630 5158 9.313118 ACAAAAGAGATTGTTGACAAATTAACC 57.687 29.630 0.10 0.00 40.52 2.85
4631 5159 9.311916 CAAAAGAGATTGTTGACAAATTAACCA 57.688 29.630 0.10 0.00 39.55 3.67
4632 5160 9.883142 AAAAGAGATTGTTGACAAATTAACCAA 57.117 25.926 0.10 0.00 39.55 3.67
4633 5161 9.533253 AAAGAGATTGTTGACAAATTAACCAAG 57.467 29.630 0.10 0.00 39.55 3.61
4634 5162 8.463930 AGAGATTGTTGACAAATTAACCAAGA 57.536 30.769 0.10 0.00 39.55 3.02
4635 5163 8.912988 AGAGATTGTTGACAAATTAACCAAGAA 58.087 29.630 0.10 0.00 39.55 2.52
4636 5164 9.185192 GAGATTGTTGACAAATTAACCAAGAAG 57.815 33.333 0.10 0.00 39.55 2.85
4637 5165 8.143835 AGATTGTTGACAAATTAACCAAGAAGG 58.856 33.333 0.10 0.00 40.67 3.46
4638 5166 5.596845 TGTTGACAAATTAACCAAGAAGGC 58.403 37.500 0.00 0.00 43.14 4.35
4639 5167 5.362430 TGTTGACAAATTAACCAAGAAGGCT 59.638 36.000 0.00 0.00 43.14 4.58
4640 5168 5.452078 TGACAAATTAACCAAGAAGGCTG 57.548 39.130 0.00 0.00 43.14 4.85
4641 5169 4.892934 TGACAAATTAACCAAGAAGGCTGT 59.107 37.500 0.00 0.00 43.14 4.40
4642 5170 5.362430 TGACAAATTAACCAAGAAGGCTGTT 59.638 36.000 0.00 0.00 43.14 3.16
4643 5171 5.600696 ACAAATTAACCAAGAAGGCTGTTG 58.399 37.500 0.00 0.00 43.14 3.33
4644 5172 5.362430 ACAAATTAACCAAGAAGGCTGTTGA 59.638 36.000 10.64 0.00 43.14 3.18
4645 5173 5.712152 AATTAACCAAGAAGGCTGTTGAG 57.288 39.130 10.64 4.75 43.14 3.02
4646 5174 1.986882 AACCAAGAAGGCTGTTGAGG 58.013 50.000 10.64 2.23 43.14 3.86
4647 5175 1.140312 ACCAAGAAGGCTGTTGAGGA 58.860 50.000 10.64 0.00 43.14 3.71
4648 5176 1.494721 ACCAAGAAGGCTGTTGAGGAA 59.505 47.619 10.64 0.00 43.14 3.36
4649 5177 2.108952 ACCAAGAAGGCTGTTGAGGAAT 59.891 45.455 10.64 0.00 43.14 3.01
4650 5178 3.160269 CCAAGAAGGCTGTTGAGGAATT 58.840 45.455 10.64 0.00 0.00 2.17
4651 5179 3.192212 CCAAGAAGGCTGTTGAGGAATTC 59.808 47.826 10.64 0.00 0.00 2.17
4652 5180 3.078891 AGAAGGCTGTTGAGGAATTCC 57.921 47.619 17.31 17.31 0.00 3.01
4670 5198 9.320295 AGGAATTCCTGAGAAGACTATATAAGG 57.680 37.037 26.52 0.00 46.55 2.69
4671 5199 8.038351 GGAATTCCTGAGAAGACTATATAAGGC 58.962 40.741 17.73 0.00 34.86 4.35
4672 5200 6.919775 TTCCTGAGAAGACTATATAAGGCC 57.080 41.667 0.00 0.00 31.00 5.19
4673 5201 5.965486 TCCTGAGAAGACTATATAAGGCCA 58.035 41.667 5.01 0.00 31.00 5.36
4674 5202 6.565974 TCCTGAGAAGACTATATAAGGCCAT 58.434 40.000 5.01 0.00 31.00 4.40
4675 5203 7.709601 TCCTGAGAAGACTATATAAGGCCATA 58.290 38.462 5.01 0.00 31.00 2.74
4676 5204 8.177456 TCCTGAGAAGACTATATAAGGCCATAA 58.823 37.037 5.01 0.00 31.00 1.90
4677 5205 8.816894 CCTGAGAAGACTATATAAGGCCATAAA 58.183 37.037 5.01 0.00 31.00 1.40
4678 5206 9.868277 CTGAGAAGACTATATAAGGCCATAAAG 57.132 37.037 5.01 0.00 31.00 1.85
4679 5207 8.816894 TGAGAAGACTATATAAGGCCATAAAGG 58.183 37.037 5.01 0.00 41.84 3.11
4692 5220 3.679389 CCATAAAGGCTGGCTATAGTGG 58.321 50.000 3.41 7.26 0.00 4.00
4693 5221 3.073062 CCATAAAGGCTGGCTATAGTGGT 59.927 47.826 3.41 0.00 0.00 4.16
4694 5222 2.717639 AAAGGCTGGCTATAGTGGTG 57.282 50.000 3.41 0.00 0.00 4.17
4695 5223 0.839946 AAGGCTGGCTATAGTGGTGG 59.160 55.000 3.41 0.00 0.00 4.61
4696 5224 0.326618 AGGCTGGCTATAGTGGTGGT 60.327 55.000 0.13 0.00 0.00 4.16
4697 5225 1.062428 AGGCTGGCTATAGTGGTGGTA 60.062 52.381 0.13 0.00 0.00 3.25
4698 5226 1.978580 GGCTGGCTATAGTGGTGGTAT 59.021 52.381 0.84 0.00 0.00 2.73
4699 5227 2.372172 GGCTGGCTATAGTGGTGGTATT 59.628 50.000 0.84 0.00 0.00 1.89
4700 5228 3.581332 GGCTGGCTATAGTGGTGGTATTA 59.419 47.826 0.84 0.00 0.00 0.98
4701 5229 4.225267 GGCTGGCTATAGTGGTGGTATTAT 59.775 45.833 0.84 0.00 0.00 1.28
4702 5230 5.424252 GGCTGGCTATAGTGGTGGTATTATA 59.576 44.000 0.84 0.00 0.00 0.98
4703 5231 6.070424 GGCTGGCTATAGTGGTGGTATTATAA 60.070 42.308 0.84 0.00 0.00 0.98
4704 5232 6.817140 GCTGGCTATAGTGGTGGTATTATAAC 59.183 42.308 0.84 0.00 0.00 1.89
4705 5233 7.310485 GCTGGCTATAGTGGTGGTATTATAACT 60.310 40.741 0.84 0.00 0.00 2.24
4706 5234 7.903145 TGGCTATAGTGGTGGTATTATAACTG 58.097 38.462 0.84 0.00 0.00 3.16
4707 5235 7.731235 TGGCTATAGTGGTGGTATTATAACTGA 59.269 37.037 0.84 0.00 0.00 3.41
4708 5236 8.759782 GGCTATAGTGGTGGTATTATAACTGAT 58.240 37.037 0.84 0.00 0.00 2.90
4715 5243 8.883731 GTGGTGGTATTATAACTGATATCATGC 58.116 37.037 5.72 0.00 0.00 4.06
4716 5244 8.601546 TGGTGGTATTATAACTGATATCATGCA 58.398 33.333 5.72 0.00 0.00 3.96
4717 5245 9.618890 GGTGGTATTATAACTGATATCATGCAT 57.381 33.333 5.72 0.00 0.00 3.96
4724 5252 9.927668 TTATAACTGATATCATGCATTCGAGAA 57.072 29.630 5.72 0.00 0.00 2.87
4728 5256 8.645730 ACTGATATCATGCATTCGAGAATATC 57.354 34.615 5.72 4.60 0.00 1.63
4729 5257 8.255905 ACTGATATCATGCATTCGAGAATATCA 58.744 33.333 5.72 8.50 0.00 2.15
4730 5258 9.095065 CTGATATCATGCATTCGAGAATATCAA 57.905 33.333 5.72 0.00 0.00 2.57
4731 5259 9.439500 TGATATCATGCATTCGAGAATATCAAA 57.561 29.630 0.00 0.00 0.00 2.69
4732 5260 9.699985 GATATCATGCATTCGAGAATATCAAAC 57.300 33.333 0.00 0.00 0.00 2.93
4733 5261 6.923928 TCATGCATTCGAGAATATCAAACA 57.076 33.333 0.00 0.00 0.00 2.83
4734 5262 7.500720 TCATGCATTCGAGAATATCAAACAT 57.499 32.000 0.00 0.00 0.00 2.71
4735 5263 8.606040 TCATGCATTCGAGAATATCAAACATA 57.394 30.769 0.00 0.00 0.00 2.29
4736 5264 8.498358 TCATGCATTCGAGAATATCAAACATAC 58.502 33.333 0.00 0.00 0.00 2.39
4737 5265 8.501580 CATGCATTCGAGAATATCAAACATACT 58.498 33.333 0.00 0.00 0.00 2.12
4738 5266 7.854534 TGCATTCGAGAATATCAAACATACTG 58.145 34.615 0.00 0.00 0.00 2.74
4739 5267 7.710475 TGCATTCGAGAATATCAAACATACTGA 59.290 33.333 0.00 0.00 0.00 3.41
4740 5268 8.715998 GCATTCGAGAATATCAAACATACTGAT 58.284 33.333 0.00 0.00 37.32 2.90
4750 5278 7.682787 ATCAAACATACTGATAAGAGAGGGT 57.317 36.000 0.00 0.00 31.66 4.34
4751 5279 7.496346 TCAAACATACTGATAAGAGAGGGTT 57.504 36.000 0.00 0.00 0.00 4.11
4752 5280 8.603898 TCAAACATACTGATAAGAGAGGGTTA 57.396 34.615 0.00 0.00 0.00 2.85
4753 5281 8.696374 TCAAACATACTGATAAGAGAGGGTTAG 58.304 37.037 0.00 0.00 0.00 2.34
4754 5282 8.696374 CAAACATACTGATAAGAGAGGGTTAGA 58.304 37.037 0.00 0.00 0.00 2.10
4755 5283 9.440761 AAACATACTGATAAGAGAGGGTTAGAT 57.559 33.333 0.00 0.00 0.00 1.98
4756 5284 9.440761 AACATACTGATAAGAGAGGGTTAGATT 57.559 33.333 0.00 0.00 0.00 2.40
4760 5288 8.840200 ACTGATAAGAGAGGGTTAGATTAACA 57.160 34.615 1.88 0.00 40.39 2.41
4761 5289 9.440761 ACTGATAAGAGAGGGTTAGATTAACAT 57.559 33.333 1.88 0.00 40.39 2.71
4765 5293 9.900112 ATAAGAGAGGGTTAGATTAACATAGGT 57.100 33.333 1.88 0.00 40.39 3.08
4767 5295 8.943594 AGAGAGGGTTAGATTAACATAGGTAG 57.056 38.462 1.88 0.00 40.39 3.18
4768 5296 8.734763 AGAGAGGGTTAGATTAACATAGGTAGA 58.265 37.037 1.88 0.00 40.39 2.59
4769 5297 9.536510 GAGAGGGTTAGATTAACATAGGTAGAT 57.463 37.037 1.88 0.00 40.39 1.98
4772 5300 9.544579 AGGGTTAGATTAACATAGGTAGATACC 57.455 37.037 0.43 0.43 42.24 2.73
4773 5301 8.465201 GGGTTAGATTAACATAGGTAGATACCG 58.535 40.741 3.41 0.00 44.39 4.02
4774 5302 9.018582 GGTTAGATTAACATAGGTAGATACCGT 57.981 37.037 3.41 0.00 44.39 4.83
4862 5390 9.661563 ACTACTCTATGATACTATGCACTACTC 57.338 37.037 0.00 0.00 0.00 2.59
4863 5391 7.931578 ACTCTATGATACTATGCACTACTCC 57.068 40.000 0.00 0.00 0.00 3.85
4864 5392 7.695055 ACTCTATGATACTATGCACTACTCCT 58.305 38.462 0.00 0.00 0.00 3.69
4865 5393 8.827758 ACTCTATGATACTATGCACTACTCCTA 58.172 37.037 0.00 0.00 0.00 2.94
4866 5394 9.845740 CTCTATGATACTATGCACTACTCCTAT 57.154 37.037 0.00 0.00 0.00 2.57
4867 5395 9.620259 TCTATGATACTATGCACTACTCCTATG 57.380 37.037 0.00 0.00 0.00 2.23
4868 5396 9.620259 CTATGATACTATGCACTACTCCTATGA 57.380 37.037 0.00 0.00 0.00 2.15
4869 5397 8.885693 ATGATACTATGCACTACTCCTATGAA 57.114 34.615 0.00 0.00 0.00 2.57
4870 5398 8.341892 TGATACTATGCACTACTCCTATGAAG 57.658 38.462 0.00 0.00 0.00 3.02
4871 5399 7.394641 TGATACTATGCACTACTCCTATGAAGG 59.605 40.741 0.00 0.00 45.21 3.46
4872 5400 5.459505 ACTATGCACTACTCCTATGAAGGT 58.540 41.667 0.00 0.00 44.09 3.50
4873 5401 6.611785 ACTATGCACTACTCCTATGAAGGTA 58.388 40.000 0.00 0.00 44.09 3.08
4874 5402 6.717540 ACTATGCACTACTCCTATGAAGGTAG 59.282 42.308 0.00 0.00 44.09 3.18
4875 5403 4.868268 TGCACTACTCCTATGAAGGTAGT 58.132 43.478 0.00 0.00 44.09 2.73
4876 5404 6.009908 TGCACTACTCCTATGAAGGTAGTA 57.990 41.667 0.00 2.88 44.09 1.82
4877 5405 6.611785 TGCACTACTCCTATGAAGGTAGTAT 58.388 40.000 0.00 0.00 44.09 2.12
4878 5406 6.715718 TGCACTACTCCTATGAAGGTAGTATC 59.284 42.308 0.00 0.00 44.09 2.24
4879 5407 6.715718 GCACTACTCCTATGAAGGTAGTATCA 59.284 42.308 0.00 0.00 44.09 2.15
4880 5408 7.394923 GCACTACTCCTATGAAGGTAGTATCAT 59.605 40.741 0.00 0.00 44.09 2.45
4881 5409 9.961264 CACTACTCCTATGAAGGTAGTATCATA 57.039 37.037 0.00 0.00 44.09 2.15
4882 5410 9.962809 ACTACTCCTATGAAGGTAGTATCATAC 57.037 37.037 0.00 0.00 44.09 2.39
4883 5411 9.961264 CTACTCCTATGAAGGTAGTATCATACA 57.039 37.037 0.00 0.00 44.09 2.29
4884 5412 8.638629 ACTCCTATGAAGGTAGTATCATACAC 57.361 38.462 0.00 0.00 44.09 2.90
4885 5413 8.449625 ACTCCTATGAAGGTAGTATCATACACT 58.550 37.037 0.00 0.00 44.09 3.55
4886 5414 9.961264 CTCCTATGAAGGTAGTATCATACACTA 57.039 37.037 0.00 0.00 44.09 2.74
4887 5415 9.961264 TCCTATGAAGGTAGTATCATACACTAG 57.039 37.037 0.00 0.00 44.09 2.57
4888 5416 9.742144 CCTATGAAGGTAGTATCATACACTAGT 57.258 37.037 0.00 0.00 38.19 2.57
4921 5449 9.355916 TGCATGATACTAGTATATGATACTCCC 57.644 37.037 22.89 9.00 0.00 4.30
4922 5450 8.798402 GCATGATACTAGTATATGATACTCCCC 58.202 40.741 22.89 8.64 0.00 4.81
4923 5451 9.868160 CATGATACTAGTATATGATACTCCCCA 57.132 37.037 15.42 5.35 0.00 4.96
4924 5452 9.869667 ATGATACTAGTATATGATACTCCCCAC 57.130 37.037 15.42 0.00 0.00 4.61
4925 5453 9.070210 TGATACTAGTATATGATACTCCCCACT 57.930 37.037 15.42 0.00 0.00 4.00
4926 5454 9.924010 GATACTAGTATATGATACTCCCCACTT 57.076 37.037 15.42 0.00 0.00 3.16
4929 5457 9.756571 ACTAGTATATGATACTCCCCACTTAAG 57.243 37.037 0.00 0.00 0.00 1.85
4930 5458 9.756571 CTAGTATATGATACTCCCCACTTAAGT 57.243 37.037 1.12 1.12 0.00 2.24
4932 5460 9.756571 AGTATATGATACTCCCCACTTAAGTAG 57.243 37.037 8.04 4.67 0.00 2.57
4933 5461 5.810080 ATGATACTCCCCACTTAAGTAGC 57.190 43.478 8.04 0.00 33.60 3.58
4934 5462 3.965347 TGATACTCCCCACTTAAGTAGCC 59.035 47.826 8.04 0.00 32.35 3.93
4935 5463 2.644060 ACTCCCCACTTAAGTAGCCT 57.356 50.000 8.04 0.00 0.00 4.58
4936 5464 3.771071 ACTCCCCACTTAAGTAGCCTA 57.229 47.619 8.04 0.00 0.00 3.93
4937 5465 4.070681 ACTCCCCACTTAAGTAGCCTAA 57.929 45.455 8.04 0.00 0.00 2.69
4938 5466 4.031611 ACTCCCCACTTAAGTAGCCTAAG 58.968 47.826 8.04 4.38 0.00 2.18
4939 5467 3.381335 TCCCCACTTAAGTAGCCTAAGG 58.619 50.000 8.04 3.37 0.00 2.69
4940 5468 2.438392 CCCCACTTAAGTAGCCTAAGGG 59.562 54.545 8.04 12.35 0.00 3.95
4941 5469 3.113043 CCCACTTAAGTAGCCTAAGGGT 58.887 50.000 8.04 0.00 37.19 4.34
4942 5470 3.134262 CCCACTTAAGTAGCCTAAGGGTC 59.866 52.174 8.04 0.00 34.28 4.46
4943 5471 3.773119 CCACTTAAGTAGCCTAAGGGTCA 59.227 47.826 8.04 0.00 34.28 4.02
4944 5472 4.141914 CCACTTAAGTAGCCTAAGGGTCAG 60.142 50.000 8.04 0.00 34.28 3.51
4945 5473 4.031611 ACTTAAGTAGCCTAAGGGTCAGG 58.968 47.826 6.26 0.00 34.28 3.86
4946 5474 2.942604 AAGTAGCCTAAGGGTCAGGA 57.057 50.000 0.00 0.00 34.91 3.86
4947 5475 3.423058 AAGTAGCCTAAGGGTCAGGAT 57.577 47.619 0.00 0.00 34.91 3.24
4948 5476 4.554553 AAGTAGCCTAAGGGTCAGGATA 57.445 45.455 0.00 0.00 34.91 2.59
4950 5478 1.705873 AGCCTAAGGGTCAGGATACG 58.294 55.000 0.00 0.00 34.91 3.06
4951 5479 0.033642 GCCTAAGGGTCAGGATACGC 59.966 60.000 0.00 0.00 34.91 4.42
4952 5480 0.680061 CCTAAGGGTCAGGATACGCC 59.320 60.000 0.00 0.00 46.39 5.68
4953 5481 1.410004 CTAAGGGTCAGGATACGCCA 58.590 55.000 0.00 0.00 46.39 5.69
4954 5482 1.971357 CTAAGGGTCAGGATACGCCAT 59.029 52.381 0.00 0.00 46.39 4.40
4955 5483 0.469917 AAGGGTCAGGATACGCCATG 59.530 55.000 0.00 0.00 46.39 3.66
4956 5484 0.398522 AGGGTCAGGATACGCCATGA 60.399 55.000 0.00 0.00 46.39 3.07
4957 5485 0.687354 GGGTCAGGATACGCCATGAT 59.313 55.000 0.00 0.00 46.39 2.45
4958 5486 1.609061 GGGTCAGGATACGCCATGATG 60.609 57.143 0.00 0.00 46.39 3.07
4959 5487 1.070758 GGTCAGGATACGCCATGATGT 59.929 52.381 0.00 0.00 46.39 3.06
4960 5488 2.138320 GTCAGGATACGCCATGATGTG 58.862 52.381 0.00 0.00 46.39 3.21
4961 5489 0.870393 CAGGATACGCCATGATGTGC 59.130 55.000 0.00 0.00 46.39 4.57
4966 5494 3.176661 CGCCATGATGTGCGTGAA 58.823 55.556 16.49 0.00 45.43 3.18
4967 5495 1.723273 CGCCATGATGTGCGTGAAT 59.277 52.632 16.49 0.00 45.43 2.57
4968 5496 0.590481 CGCCATGATGTGCGTGAATG 60.590 55.000 16.49 0.00 45.43 2.67
4969 5497 0.452987 GCCATGATGTGCGTGAATGT 59.547 50.000 0.00 0.00 35.44 2.71
4970 5498 1.670295 GCCATGATGTGCGTGAATGTA 59.330 47.619 0.00 0.00 35.44 2.29
4971 5499 2.097304 GCCATGATGTGCGTGAATGTAA 59.903 45.455 0.00 0.00 35.44 2.41
4972 5500 3.683989 CCATGATGTGCGTGAATGTAAC 58.316 45.455 0.00 0.00 35.44 2.50
4973 5501 3.344852 CATGATGTGCGTGAATGTAACG 58.655 45.455 0.00 0.00 43.81 3.18
4978 5506 3.086309 CGTGAATGTAACGCCCCG 58.914 61.111 0.00 0.00 33.79 5.73
4979 5507 1.446445 CGTGAATGTAACGCCCCGA 60.446 57.895 0.00 0.00 33.79 5.14
4980 5508 1.418342 CGTGAATGTAACGCCCCGAG 61.418 60.000 0.00 0.00 33.79 4.63
4981 5509 0.108520 GTGAATGTAACGCCCCGAGA 60.109 55.000 0.00 0.00 0.00 4.04
4982 5510 0.108520 TGAATGTAACGCCCCGAGAC 60.109 55.000 0.00 0.00 0.00 3.36
4983 5511 0.808847 GAATGTAACGCCCCGAGACC 60.809 60.000 0.00 0.00 0.00 3.85
4984 5512 2.567564 AATGTAACGCCCCGAGACCG 62.568 60.000 0.00 0.00 0.00 4.79
4985 5513 3.752339 GTAACGCCCCGAGACCGT 61.752 66.667 0.00 0.00 36.68 4.83
4986 5514 2.990967 TAACGCCCCGAGACCGTT 60.991 61.111 3.17 3.17 45.72 4.44
4987 5515 3.285523 TAACGCCCCGAGACCGTTG 62.286 63.158 7.77 0.00 43.93 4.10
4995 5523 4.681978 GAGACCGTTGCGCCAGGT 62.682 66.667 16.69 16.69 41.63 4.00
4996 5524 4.988598 AGACCGTTGCGCCAGGTG 62.989 66.667 20.67 0.00 38.57 4.00
4999 5527 4.988598 CCGTTGCGCCAGGTGTCT 62.989 66.667 4.18 0.00 0.00 3.41
5000 5528 2.972505 CGTTGCGCCAGGTGTCTT 60.973 61.111 4.18 0.00 0.00 3.01
5001 5529 2.946762 GTTGCGCCAGGTGTCTTC 59.053 61.111 4.18 0.00 0.00 2.87
5002 5530 2.281484 TTGCGCCAGGTGTCTTCC 60.281 61.111 4.18 0.00 0.00 3.46
5003 5531 3.113514 TTGCGCCAGGTGTCTTCCA 62.114 57.895 4.18 0.00 0.00 3.53
5004 5532 2.743928 GCGCCAGGTGTCTTCCAG 60.744 66.667 0.00 0.00 0.00 3.86
5005 5533 2.743718 CGCCAGGTGTCTTCCAGT 59.256 61.111 0.00 0.00 0.00 4.00
5006 5534 1.071471 CGCCAGGTGTCTTCCAGTT 59.929 57.895 0.00 0.00 0.00 3.16
5007 5535 0.320374 CGCCAGGTGTCTTCCAGTTA 59.680 55.000 0.00 0.00 0.00 2.24
5008 5536 1.066143 CGCCAGGTGTCTTCCAGTTAT 60.066 52.381 0.00 0.00 0.00 1.89
5009 5537 2.615493 CGCCAGGTGTCTTCCAGTTATT 60.615 50.000 0.00 0.00 0.00 1.40
5010 5538 3.010420 GCCAGGTGTCTTCCAGTTATTC 58.990 50.000 0.00 0.00 0.00 1.75
5011 5539 3.262420 CCAGGTGTCTTCCAGTTATTCG 58.738 50.000 0.00 0.00 0.00 3.34
5012 5540 2.673368 CAGGTGTCTTCCAGTTATTCGC 59.327 50.000 0.00 0.00 0.00 4.70
5013 5541 2.567615 AGGTGTCTTCCAGTTATTCGCT 59.432 45.455 0.00 0.00 0.00 4.93
5014 5542 2.673368 GGTGTCTTCCAGTTATTCGCTG 59.327 50.000 0.00 0.00 0.00 5.18
5015 5543 3.326747 GTGTCTTCCAGTTATTCGCTGT 58.673 45.455 0.00 0.00 32.41 4.40
5016 5544 3.746492 GTGTCTTCCAGTTATTCGCTGTT 59.254 43.478 0.00 0.00 32.41 3.16
5017 5545 4.213482 GTGTCTTCCAGTTATTCGCTGTTT 59.787 41.667 0.00 0.00 32.41 2.83
5018 5546 4.819630 TGTCTTCCAGTTATTCGCTGTTTT 59.180 37.500 0.00 0.00 32.41 2.43
5019 5547 5.298276 TGTCTTCCAGTTATTCGCTGTTTTT 59.702 36.000 0.00 0.00 32.41 1.94
5020 5548 5.625311 GTCTTCCAGTTATTCGCTGTTTTTG 59.375 40.000 0.00 0.00 32.41 2.44
5021 5549 3.896122 TCCAGTTATTCGCTGTTTTTGC 58.104 40.909 0.00 0.00 32.41 3.68
5022 5550 2.986479 CCAGTTATTCGCTGTTTTTGCC 59.014 45.455 0.00 0.00 32.41 4.52
5023 5551 3.551863 CCAGTTATTCGCTGTTTTTGCCA 60.552 43.478 0.00 0.00 32.41 4.92
5024 5552 4.236935 CAGTTATTCGCTGTTTTTGCCAT 58.763 39.130 0.00 0.00 0.00 4.40
5025 5553 4.090354 CAGTTATTCGCTGTTTTTGCCATG 59.910 41.667 0.00 0.00 0.00 3.66
5026 5554 2.818130 ATTCGCTGTTTTTGCCATGT 57.182 40.000 0.00 0.00 0.00 3.21
5027 5555 2.132740 TTCGCTGTTTTTGCCATGTC 57.867 45.000 0.00 0.00 0.00 3.06
5028 5556 1.028130 TCGCTGTTTTTGCCATGTCA 58.972 45.000 0.00 0.00 0.00 3.58
5029 5557 1.612950 TCGCTGTTTTTGCCATGTCAT 59.387 42.857 0.00 0.00 0.00 3.06
5030 5558 2.035704 TCGCTGTTTTTGCCATGTCATT 59.964 40.909 0.00 0.00 0.00 2.57
5031 5559 2.409378 CGCTGTTTTTGCCATGTCATTC 59.591 45.455 0.00 0.00 0.00 2.67
5032 5560 2.409378 GCTGTTTTTGCCATGTCATTCG 59.591 45.455 0.00 0.00 0.00 3.34
5033 5561 2.402305 TGTTTTTGCCATGTCATTCGC 58.598 42.857 0.00 0.00 0.00 4.70
5034 5562 2.035704 TGTTTTTGCCATGTCATTCGCT 59.964 40.909 0.00 0.00 0.00 4.93
5035 5563 3.059166 GTTTTTGCCATGTCATTCGCTT 58.941 40.909 0.00 0.00 0.00 4.68
5036 5564 2.350899 TTTGCCATGTCATTCGCTTG 57.649 45.000 0.00 0.00 0.00 4.01
5037 5565 1.246649 TTGCCATGTCATTCGCTTGT 58.753 45.000 0.00 0.00 0.00 3.16
5038 5566 0.522626 TGCCATGTCATTCGCTTGTG 59.477 50.000 0.00 0.00 0.00 3.33
5039 5567 0.523072 GCCATGTCATTCGCTTGTGT 59.477 50.000 0.00 0.00 0.00 3.72
5040 5568 1.730121 GCCATGTCATTCGCTTGTGTG 60.730 52.381 0.00 0.00 0.00 3.82
5041 5569 1.536766 CCATGTCATTCGCTTGTGTGT 59.463 47.619 0.00 0.00 0.00 3.72
5042 5570 2.030893 CCATGTCATTCGCTTGTGTGTT 60.031 45.455 0.00 0.00 0.00 3.32
5043 5571 3.188254 CCATGTCATTCGCTTGTGTGTTA 59.812 43.478 0.00 0.00 0.00 2.41
5044 5572 3.870723 TGTCATTCGCTTGTGTGTTAC 57.129 42.857 0.00 0.00 0.00 2.50
5045 5573 3.198872 TGTCATTCGCTTGTGTGTTACA 58.801 40.909 0.00 0.00 37.56 2.41
5046 5574 3.812609 TGTCATTCGCTTGTGTGTTACAT 59.187 39.130 0.00 0.00 39.48 2.29
5047 5575 4.084066 TGTCATTCGCTTGTGTGTTACATC 60.084 41.667 0.00 0.00 39.48 3.06
5048 5576 4.152402 GTCATTCGCTTGTGTGTTACATCT 59.848 41.667 0.00 0.00 39.48 2.90
5049 5577 4.754618 TCATTCGCTTGTGTGTTACATCTT 59.245 37.500 0.00 0.00 39.48 2.40
5050 5578 4.466567 TTCGCTTGTGTGTTACATCTTG 57.533 40.909 0.00 0.00 39.48 3.02
5051 5579 2.223144 TCGCTTGTGTGTTACATCTTGC 59.777 45.455 0.00 0.00 39.48 4.01
5052 5580 2.665519 CGCTTGTGTGTTACATCTTGCC 60.666 50.000 0.00 0.00 39.48 4.52
5053 5581 2.293122 GCTTGTGTGTTACATCTTGCCA 59.707 45.455 0.00 0.00 39.48 4.92
5054 5582 3.057315 GCTTGTGTGTTACATCTTGCCAT 60.057 43.478 0.00 0.00 39.48 4.40
5055 5583 4.478699 CTTGTGTGTTACATCTTGCCATG 58.521 43.478 0.00 0.00 39.48 3.66
5056 5584 3.485394 TGTGTGTTACATCTTGCCATGT 58.515 40.909 0.00 0.00 40.28 3.21
5057 5585 3.501828 TGTGTGTTACATCTTGCCATGTC 59.498 43.478 0.00 0.00 38.07 3.06
5058 5586 3.501828 GTGTGTTACATCTTGCCATGTCA 59.498 43.478 0.00 0.00 38.07 3.58
5059 5587 4.156556 GTGTGTTACATCTTGCCATGTCAT 59.843 41.667 0.00 0.00 38.07 3.06
5060 5588 4.395854 TGTGTTACATCTTGCCATGTCATC 59.604 41.667 0.00 0.00 38.07 2.92
5061 5589 4.395854 GTGTTACATCTTGCCATGTCATCA 59.604 41.667 0.00 0.00 38.07 3.07
5062 5590 5.066893 GTGTTACATCTTGCCATGTCATCAT 59.933 40.000 0.00 0.00 38.07 2.45
5064 5592 3.628008 ACATCTTGCCATGTCATCATGT 58.372 40.909 7.30 0.00 46.99 3.21
5065 5593 3.380320 ACATCTTGCCATGTCATCATGTG 59.620 43.478 7.30 0.00 46.99 3.21
5066 5594 1.746787 TCTTGCCATGTCATCATGTGC 59.253 47.619 7.30 9.77 46.99 4.57
5067 5595 1.474879 CTTGCCATGTCATCATGTGCA 59.525 47.619 14.96 14.96 46.99 4.57
5068 5596 1.770294 TGCCATGTCATCATGTGCAT 58.230 45.000 14.96 2.88 46.99 3.96
5069 5597 2.933573 TGCCATGTCATCATGTGCATA 58.066 42.857 14.96 0.00 46.99 3.14
5070 5598 3.288964 TGCCATGTCATCATGTGCATAA 58.711 40.909 14.96 0.00 46.99 1.90
5071 5599 3.067040 TGCCATGTCATCATGTGCATAAC 59.933 43.478 14.96 0.00 46.99 1.89
5072 5600 3.067040 GCCATGTCATCATGTGCATAACA 59.933 43.478 0.00 0.00 46.99 2.41
5094 5622 7.181143 ACATCATCATGTTTTCAAAACTTGC 57.819 32.000 19.40 0.00 40.66 4.01
5095 5623 6.762187 ACATCATCATGTTTTCAAAACTTGCA 59.238 30.769 19.40 11.51 40.66 4.08
5096 5624 7.442969 ACATCATCATGTTTTCAAAACTTGCAT 59.557 29.630 19.40 12.81 40.66 3.96
5097 5625 7.410800 TCATCATGTTTTCAAAACTTGCATC 57.589 32.000 19.40 0.00 0.00 3.91
5098 5626 6.424509 TCATCATGTTTTCAAAACTTGCATCC 59.575 34.615 19.40 0.00 0.00 3.51
5099 5627 4.744137 TCATGTTTTCAAAACTTGCATCCG 59.256 37.500 19.40 1.15 0.00 4.18
5100 5628 4.116747 TGTTTTCAAAACTTGCATCCGT 57.883 36.364 14.10 0.00 0.00 4.69
5101 5629 4.109050 TGTTTTCAAAACTTGCATCCGTC 58.891 39.130 14.10 0.00 0.00 4.79
5102 5630 3.363341 TTTCAAAACTTGCATCCGTCC 57.637 42.857 0.00 0.00 0.00 4.79
5103 5631 0.871722 TCAAAACTTGCATCCGTCCG 59.128 50.000 0.00 0.00 0.00 4.79
5104 5632 0.109781 CAAAACTTGCATCCGTCCGG 60.110 55.000 0.00 0.00 0.00 5.14
5105 5633 1.241315 AAAACTTGCATCCGTCCGGG 61.241 55.000 0.00 0.00 35.59 5.73
5106 5634 2.406002 AAACTTGCATCCGTCCGGGT 62.406 55.000 0.00 0.00 37.00 5.28
5107 5635 2.046314 CTTGCATCCGTCCGGGTT 60.046 61.111 0.00 0.00 37.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.198837 GCATTCATCATTGCATATATTTTCACA 57.801 29.630 0.00 0.00 38.72 3.58
35 36 9.198837 TGCATTCATCATTGCATATATTTTCAC 57.801 29.630 0.00 0.00 43.54 3.18
46 47 3.897141 ACCATTGCATTCATCATTGCA 57.103 38.095 0.00 0.00 46.51 4.08
47 48 5.986741 TCAATACCATTGCATTCATCATTGC 59.013 36.000 0.00 0.00 39.33 3.56
48 49 8.601845 AATCAATACCATTGCATTCATCATTG 57.398 30.769 0.00 0.00 0.00 2.82
49 50 9.051679 CAAATCAATACCATTGCATTCATCATT 57.948 29.630 0.00 0.00 0.00 2.57
50 51 7.659799 CCAAATCAATACCATTGCATTCATCAT 59.340 33.333 0.00 0.00 0.00 2.45
51 52 6.987404 CCAAATCAATACCATTGCATTCATCA 59.013 34.615 0.00 0.00 0.00 3.07
52 53 6.987992 ACCAAATCAATACCATTGCATTCATC 59.012 34.615 0.00 0.00 0.00 2.92
53 54 6.764085 CACCAAATCAATACCATTGCATTCAT 59.236 34.615 0.00 0.00 0.00 2.57
54 55 6.107343 CACCAAATCAATACCATTGCATTCA 58.893 36.000 0.00 0.00 0.00 2.57
55 56 5.524646 CCACCAAATCAATACCATTGCATTC 59.475 40.000 0.00 0.00 0.00 2.67
56 57 5.045724 ACCACCAAATCAATACCATTGCATT 60.046 36.000 0.00 0.00 0.00 3.56
57 58 4.470664 ACCACCAAATCAATACCATTGCAT 59.529 37.500 0.00 0.00 0.00 3.96
58 59 3.837146 ACCACCAAATCAATACCATTGCA 59.163 39.130 0.00 0.00 0.00 4.08
59 60 4.183101 CACCACCAAATCAATACCATTGC 58.817 43.478 0.00 0.00 0.00 3.56
60 61 5.404466 ACACCACCAAATCAATACCATTG 57.596 39.130 0.00 0.00 0.00 2.82
61 62 8.859090 CATATACACCACCAAATCAATACCATT 58.141 33.333 0.00 0.00 0.00 3.16
62 63 8.004215 ACATATACACCACCAAATCAATACCAT 58.996 33.333 0.00 0.00 0.00 3.55
63 64 7.350382 ACATATACACCACCAAATCAATACCA 58.650 34.615 0.00 0.00 0.00 3.25
64 65 7.817418 ACATATACACCACCAAATCAATACC 57.183 36.000 0.00 0.00 0.00 2.73
93 94 9.063615 ACTTTCAACCAGTTCGTAGAAAAATAT 57.936 29.630 0.00 0.00 45.90 1.28
94 95 8.441312 ACTTTCAACCAGTTCGTAGAAAAATA 57.559 30.769 0.00 0.00 45.90 1.40
95 96 7.329588 ACTTTCAACCAGTTCGTAGAAAAAT 57.670 32.000 0.00 0.00 45.90 1.82
96 97 6.746745 ACTTTCAACCAGTTCGTAGAAAAA 57.253 33.333 0.00 0.00 45.90 1.94
97 98 6.817641 TGTACTTTCAACCAGTTCGTAGAAAA 59.182 34.615 0.00 0.00 45.90 2.29
98 99 6.339730 TGTACTTTCAACCAGTTCGTAGAAA 58.660 36.000 0.00 0.00 45.90 2.52
99 100 5.904941 TGTACTTTCAACCAGTTCGTAGAA 58.095 37.500 0.00 0.00 45.90 2.10
100 101 5.518848 TGTACTTTCAACCAGTTCGTAGA 57.481 39.130 0.00 0.00 0.00 2.59
101 102 7.878477 TTATGTACTTTCAACCAGTTCGTAG 57.122 36.000 0.00 0.00 0.00 3.51
102 103 7.927629 ACTTTATGTACTTTCAACCAGTTCGTA 59.072 33.333 0.00 0.00 0.00 3.43
103 104 6.764560 ACTTTATGTACTTTCAACCAGTTCGT 59.235 34.615 0.00 0.00 0.00 3.85
104 105 7.186021 ACTTTATGTACTTTCAACCAGTTCG 57.814 36.000 0.00 0.00 0.00 3.95
105 106 9.233232 CAAACTTTATGTACTTTCAACCAGTTC 57.767 33.333 0.00 0.00 0.00 3.01
106 107 8.962679 TCAAACTTTATGTACTTTCAACCAGTT 58.037 29.630 0.00 0.00 0.00 3.16
107 108 8.403236 GTCAAACTTTATGTACTTTCAACCAGT 58.597 33.333 0.00 0.00 0.00 4.00
108 109 8.621286 AGTCAAACTTTATGTACTTTCAACCAG 58.379 33.333 0.00 0.00 0.00 4.00
109 110 8.514330 AGTCAAACTTTATGTACTTTCAACCA 57.486 30.769 0.00 0.00 0.00 3.67
110 111 9.797556 AAAGTCAAACTTTATGTACTTTCAACC 57.202 29.630 3.34 0.00 45.75 3.77
289 291 7.171337 GCTGAAGCATTTTGTTGATCCTAAAAA 59.829 33.333 0.00 0.00 41.59 1.94
290 292 6.646240 GCTGAAGCATTTTGTTGATCCTAAAA 59.354 34.615 0.00 0.00 41.59 1.52
291 293 6.015180 AGCTGAAGCATTTTGTTGATCCTAAA 60.015 34.615 4.90 0.00 45.16 1.85
292 294 5.477984 AGCTGAAGCATTTTGTTGATCCTAA 59.522 36.000 4.90 0.00 45.16 2.69
293 295 5.012239 AGCTGAAGCATTTTGTTGATCCTA 58.988 37.500 4.90 0.00 45.16 2.94
294 296 3.830755 AGCTGAAGCATTTTGTTGATCCT 59.169 39.130 4.90 0.00 45.16 3.24
295 297 3.924686 CAGCTGAAGCATTTTGTTGATCC 59.075 43.478 8.42 0.00 45.16 3.36
296 298 4.384846 CACAGCTGAAGCATTTTGTTGATC 59.615 41.667 23.35 0.00 45.16 2.92
297 299 4.202182 ACACAGCTGAAGCATTTTGTTGAT 60.202 37.500 23.35 0.00 45.16 2.57
298 300 3.130869 ACACAGCTGAAGCATTTTGTTGA 59.869 39.130 23.35 0.00 45.16 3.18
299 301 3.450578 ACACAGCTGAAGCATTTTGTTG 58.549 40.909 23.35 5.83 45.16 3.33
300 302 3.806625 ACACAGCTGAAGCATTTTGTT 57.193 38.095 23.35 0.00 45.16 2.83
301 303 3.450578 CAACACAGCTGAAGCATTTTGT 58.549 40.909 23.35 8.73 45.16 2.83
302 304 2.220133 GCAACACAGCTGAAGCATTTTG 59.780 45.455 23.35 8.00 45.16 2.44
306 308 0.313043 GTGCAACACAGCTGAAGCAT 59.687 50.000 23.35 2.48 39.59 3.79
504 519 3.688553 CGGGAAGCAGGATAACTCC 57.311 57.895 0.00 0.00 42.43 3.85
559 582 4.363990 ACCCTCGACTGCACTGCG 62.364 66.667 0.00 0.00 0.00 5.18
560 583 2.740055 CACCCTCGACTGCACTGC 60.740 66.667 0.00 0.00 0.00 4.40
561 584 2.740055 GCACCCTCGACTGCACTG 60.740 66.667 1.04 0.00 33.31 3.66
562 585 2.919856 AGCACCCTCGACTGCACT 60.920 61.111 7.52 0.00 35.73 4.40
601 624 4.459089 GCCACGGGACTCTCTGCC 62.459 72.222 0.00 0.00 0.00 4.85
674 697 1.078848 ACCAGCGCCTGTGAATCTC 60.079 57.895 2.29 0.00 0.00 2.75
718 743 2.251869 TACGACGACGAACAGATTGG 57.748 50.000 15.32 0.00 42.66 3.16
729 754 0.514691 ACGTGGACTCTTACGACGAC 59.485 55.000 0.00 0.00 42.54 4.34
763 788 3.183775 AGGAATTCAAACGAAACGAGACG 59.816 43.478 7.93 0.00 0.00 4.18
880 911 2.871096 TATTGCCGGGAATGGGATAC 57.129 50.000 29.35 0.00 0.00 2.24
935 966 3.617538 CCGCGCGTTCTTCGATCC 61.618 66.667 29.95 0.00 42.86 3.36
951 982 2.870411 ACCTAATCTAATCAAACGCGCC 59.130 45.455 5.73 0.00 0.00 6.53
976 1007 2.356125 CCATGGATCTGTTTTCCCGAGT 60.356 50.000 5.56 0.00 31.87 4.18
1048 1081 2.440980 AGCCTCGGGTACGGGTAC 60.441 66.667 0.30 0.30 39.51 3.34
1049 1082 2.124151 GAGCCTCGGGTACGGGTA 60.124 66.667 0.00 0.00 39.51 3.69
1188 1221 1.885388 CTGCGACGTGGTGTTGGAA 60.885 57.895 0.00 0.00 31.10 3.53
1263 1296 3.171528 GCGGTAGATAGGGTTTAGGGAT 58.828 50.000 0.00 0.00 0.00 3.85
1296 1329 9.239002 CAGATTAGTACAGAATTTAGGACGAAG 57.761 37.037 0.00 0.00 0.00 3.79
1327 1361 2.955660 GTTCTCCACGATCCTGAGATCT 59.044 50.000 0.00 0.00 45.83 2.75
1363 1397 2.360980 CCCCTCGACCTCCAGTCT 59.639 66.667 0.00 0.00 43.91 3.24
1456 1490 2.476185 GGCGATGTTGTTGAAGAATCCG 60.476 50.000 0.00 0.00 0.00 4.18
1545 1579 2.325484 TGGTGGTGTACATGTCTGACT 58.675 47.619 0.00 0.00 0.00 3.41
1547 1581 3.673902 CATTGGTGGTGTACATGTCTGA 58.326 45.455 0.00 0.00 0.00 3.27
1610 1648 1.480954 GTTCCTGAAGCCACGGAGATA 59.519 52.381 0.00 0.00 0.00 1.98
1616 1654 1.672356 CCAGGTTCCTGAAGCCACG 60.672 63.158 19.12 0.00 39.46 4.94
1635 1673 2.408050 CCATGTATAGCAGGAACGCTC 58.592 52.381 0.00 0.00 42.62 5.03
1848 1886 3.758554 ACTTAATCCTGTCCAATGTGCAC 59.241 43.478 10.75 10.75 0.00 4.57
2052 2093 1.615883 CAGGTGATGAGATCCCTACGG 59.384 57.143 0.00 0.00 31.47 4.02
2269 2331 8.161699 TCCATGTGACAGATGATGAATTTATG 57.838 34.615 13.91 0.00 0.00 1.90
2300 2362 3.763897 CAGGACCAAAGAATACCAAAGGG 59.236 47.826 0.00 0.00 41.29 3.95
2310 2372 8.493607 TGTGATCATATTATCAGGACCAAAGAA 58.506 33.333 0.00 0.00 36.57 2.52
2358 2420 8.630840 GTTTGAAAATTGAAAAGATCTCGCTAC 58.369 33.333 0.00 0.00 0.00 3.58
2360 2422 6.642540 GGTTTGAAAATTGAAAAGATCTCGCT 59.357 34.615 0.00 0.00 0.00 4.93
2366 2428 4.754618 GCCCGGTTTGAAAATTGAAAAGAT 59.245 37.500 0.00 0.00 0.00 2.40
2368 2430 4.126437 AGCCCGGTTTGAAAATTGAAAAG 58.874 39.130 0.00 0.00 0.00 2.27
2373 2435 4.180817 GGATTAGCCCGGTTTGAAAATTG 58.819 43.478 0.00 0.00 0.00 2.32
2374 2436 4.465632 GGATTAGCCCGGTTTGAAAATT 57.534 40.909 0.00 0.00 0.00 1.82
2741 2805 6.094048 TCCGAGAAATGCTTTCCTTTCATAAG 59.906 38.462 5.39 0.00 40.54 1.73
2764 2828 1.625818 TCCAACTTCCTGAAGCTCTCC 59.374 52.381 6.81 0.00 41.99 3.71
2795 2859 3.392882 CACCCTTCCTGCAAATTCAAAC 58.607 45.455 0.00 0.00 0.00 2.93
3355 3419 1.216710 CTTGGAGACGAGCAGGACC 59.783 63.158 0.00 0.00 34.36 4.46
3580 3644 1.826054 CGGCTCCTCCTCGATCACT 60.826 63.158 0.00 0.00 0.00 3.41
3984 4048 0.103208 GCGTGGTCAGAGGATGGTAG 59.897 60.000 0.00 0.00 0.00 3.18
4007 4071 1.499056 GGTCTCTGCAATGCACACG 59.501 57.895 2.72 0.00 33.79 4.49
4050 4114 1.811266 CTCCGGCATGAAGTCGTGG 60.811 63.158 0.00 0.00 45.80 4.94
4225 4293 8.652290 CCTAAAATAGCTAAGGGACTCACTAAT 58.348 37.037 0.00 0.00 38.49 1.73
4255 4325 4.760047 CGCGGGGTGCTAGCAAGT 62.760 66.667 21.29 0.00 43.27 3.16
4256 4326 3.950794 TTCGCGGGGTGCTAGCAAG 62.951 63.158 21.29 12.30 43.27 4.01
4257 4327 3.950794 CTTCGCGGGGTGCTAGCAA 62.951 63.158 21.29 0.00 43.27 3.91
4258 4328 4.451150 CTTCGCGGGGTGCTAGCA 62.451 66.667 14.93 14.93 43.27 3.49
4287 4357 4.837093 AAATCCACTAATTCAGGGTCGA 57.163 40.909 0.00 0.00 0.00 4.20
4310 4380 7.144722 TCGATGATTTGCTTACAACTTCAAT 57.855 32.000 0.00 0.00 34.87 2.57
4346 4416 5.518848 TCAGGCATGCCAATAAAATAGTG 57.481 39.130 37.18 22.05 38.92 2.74
4379 4463 1.621317 TCACGGAGTTGACAATGGCTA 59.379 47.619 0.00 0.00 41.61 3.93
4440 4524 6.861572 CGCCTATAGATCGTAGTGAAAAATCA 59.138 38.462 0.00 0.00 0.00 2.57
4447 4531 2.082231 GGCGCCTATAGATCGTAGTGA 58.918 52.381 22.15 0.00 0.00 3.41
4448 4532 1.810755 TGGCGCCTATAGATCGTAGTG 59.189 52.381 29.70 0.00 0.00 2.74
4553 5081 3.860125 GTGTGTGTGTGCGCGTGT 61.860 61.111 8.43 0.00 0.00 4.49
4574 5102 7.033185 ACTTAGACTTTGTTCACGCAATTTTT 58.967 30.769 0.00 0.00 0.00 1.94
4575 5103 6.560711 ACTTAGACTTTGTTCACGCAATTTT 58.439 32.000 0.00 0.00 0.00 1.82
4576 5104 6.131544 ACTTAGACTTTGTTCACGCAATTT 57.868 33.333 0.00 0.00 0.00 1.82
4577 5105 5.751243 ACTTAGACTTTGTTCACGCAATT 57.249 34.783 0.00 0.00 0.00 2.32
4578 5106 5.295787 TGAACTTAGACTTTGTTCACGCAAT 59.704 36.000 14.82 0.00 43.15 3.56
4579 5107 4.632251 TGAACTTAGACTTTGTTCACGCAA 59.368 37.500 14.82 0.00 43.15 4.85
4580 5108 4.185394 TGAACTTAGACTTTGTTCACGCA 58.815 39.130 14.82 0.00 43.15 5.24
4581 5109 4.506654 TCTGAACTTAGACTTTGTTCACGC 59.493 41.667 14.82 0.00 43.15 5.34
4582 5110 5.518847 TGTCTGAACTTAGACTTTGTTCACG 59.481 40.000 14.82 12.16 45.70 4.35
4583 5111 6.903883 TGTCTGAACTTAGACTTTGTTCAC 57.096 37.500 14.82 9.61 45.70 3.18
4584 5112 7.915293 TTTGTCTGAACTTAGACTTTGTTCA 57.085 32.000 16.71 16.71 45.70 3.18
4585 5113 8.665685 TCTTTTGTCTGAACTTAGACTTTGTTC 58.334 33.333 7.35 11.18 45.70 3.18
4586 5114 8.561738 TCTTTTGTCTGAACTTAGACTTTGTT 57.438 30.769 7.35 0.00 45.70 2.83
4587 5115 8.041323 TCTCTTTTGTCTGAACTTAGACTTTGT 58.959 33.333 7.35 0.00 45.70 2.83
4588 5116 8.425577 TCTCTTTTGTCTGAACTTAGACTTTG 57.574 34.615 7.35 0.00 45.70 2.77
4589 5117 9.620259 AATCTCTTTTGTCTGAACTTAGACTTT 57.380 29.630 7.35 0.00 45.70 2.66
4590 5118 9.050601 CAATCTCTTTTGTCTGAACTTAGACTT 57.949 33.333 7.35 0.00 45.70 3.01
4591 5119 8.207545 ACAATCTCTTTTGTCTGAACTTAGACT 58.792 33.333 7.35 0.00 45.70 3.24
4592 5120 8.371770 ACAATCTCTTTTGTCTGAACTTAGAC 57.628 34.615 0.00 0.00 45.71 2.59
4593 5121 8.830580 CAACAATCTCTTTTGTCTGAACTTAGA 58.169 33.333 0.00 0.00 38.85 2.10
4594 5122 8.830580 TCAACAATCTCTTTTGTCTGAACTTAG 58.169 33.333 0.00 0.00 38.85 2.18
4595 5123 8.612619 GTCAACAATCTCTTTTGTCTGAACTTA 58.387 33.333 0.00 0.00 38.85 2.24
4596 5124 7.121168 TGTCAACAATCTCTTTTGTCTGAACTT 59.879 33.333 0.00 0.00 38.85 2.66
4597 5125 6.599244 TGTCAACAATCTCTTTTGTCTGAACT 59.401 34.615 0.00 0.00 38.85 3.01
4598 5126 6.785191 TGTCAACAATCTCTTTTGTCTGAAC 58.215 36.000 0.00 0.00 38.85 3.18
4599 5127 7.389803 TTGTCAACAATCTCTTTTGTCTGAA 57.610 32.000 0.00 0.00 38.85 3.02
4600 5128 7.389803 TTTGTCAACAATCTCTTTTGTCTGA 57.610 32.000 0.00 0.00 38.85 3.27
4601 5129 8.638685 AATTTGTCAACAATCTCTTTTGTCTG 57.361 30.769 0.00 0.00 38.85 3.51
4604 5132 9.313118 GGTTAATTTGTCAACAATCTCTTTTGT 57.687 29.630 0.00 0.00 41.49 2.83
4605 5133 9.311916 TGGTTAATTTGTCAACAATCTCTTTTG 57.688 29.630 0.00 0.00 35.55 2.44
4606 5134 9.883142 TTGGTTAATTTGTCAACAATCTCTTTT 57.117 25.926 0.00 0.00 35.55 2.27
4607 5135 9.533253 CTTGGTTAATTTGTCAACAATCTCTTT 57.467 29.630 0.00 0.00 35.55 2.52
4608 5136 8.912988 TCTTGGTTAATTTGTCAACAATCTCTT 58.087 29.630 0.00 0.00 35.55 2.85
4609 5137 8.463930 TCTTGGTTAATTTGTCAACAATCTCT 57.536 30.769 0.00 0.00 35.55 3.10
4610 5138 9.185192 CTTCTTGGTTAATTTGTCAACAATCTC 57.815 33.333 0.00 0.00 35.55 2.75
4611 5139 8.143835 CCTTCTTGGTTAATTTGTCAACAATCT 58.856 33.333 0.00 0.00 35.55 2.40
4612 5140 7.095649 GCCTTCTTGGTTAATTTGTCAACAATC 60.096 37.037 0.00 0.00 38.35 2.67
4613 5141 6.705825 GCCTTCTTGGTTAATTTGTCAACAAT 59.294 34.615 0.00 0.00 38.35 2.71
4614 5142 6.045955 GCCTTCTTGGTTAATTTGTCAACAA 58.954 36.000 0.00 0.00 38.35 2.83
4615 5143 5.362430 AGCCTTCTTGGTTAATTTGTCAACA 59.638 36.000 0.00 0.00 38.35 3.33
4616 5144 5.691754 CAGCCTTCTTGGTTAATTTGTCAAC 59.308 40.000 0.00 0.00 38.35 3.18
4617 5145 5.362430 ACAGCCTTCTTGGTTAATTTGTCAA 59.638 36.000 0.00 0.00 38.35 3.18
4618 5146 4.892934 ACAGCCTTCTTGGTTAATTTGTCA 59.107 37.500 0.00 0.00 38.35 3.58
4619 5147 5.453567 ACAGCCTTCTTGGTTAATTTGTC 57.546 39.130 0.00 0.00 38.35 3.18
4620 5148 5.362430 TCAACAGCCTTCTTGGTTAATTTGT 59.638 36.000 0.00 0.00 38.35 2.83
4621 5149 5.841810 TCAACAGCCTTCTTGGTTAATTTG 58.158 37.500 0.00 0.00 38.35 2.32
4622 5150 5.011023 CCTCAACAGCCTTCTTGGTTAATTT 59.989 40.000 0.00 0.00 38.35 1.82
4623 5151 4.524328 CCTCAACAGCCTTCTTGGTTAATT 59.476 41.667 0.00 0.00 38.35 1.40
4624 5152 4.082125 CCTCAACAGCCTTCTTGGTTAAT 58.918 43.478 0.00 0.00 38.35 1.40
4625 5153 3.137544 TCCTCAACAGCCTTCTTGGTTAA 59.862 43.478 0.00 0.00 38.35 2.01
4626 5154 2.708861 TCCTCAACAGCCTTCTTGGTTA 59.291 45.455 0.00 0.00 38.35 2.85
4627 5155 1.494721 TCCTCAACAGCCTTCTTGGTT 59.505 47.619 0.00 0.00 38.35 3.67
4628 5156 1.140312 TCCTCAACAGCCTTCTTGGT 58.860 50.000 0.00 0.00 38.35 3.67
4629 5157 2.276732 TTCCTCAACAGCCTTCTTGG 57.723 50.000 0.00 0.00 39.35 3.61
4630 5158 3.192212 GGAATTCCTCAACAGCCTTCTTG 59.808 47.826 17.73 0.00 0.00 3.02
4631 5159 3.075134 AGGAATTCCTCAACAGCCTTCTT 59.925 43.478 21.89 0.00 44.77 2.52
4632 5160 2.646798 AGGAATTCCTCAACAGCCTTCT 59.353 45.455 21.89 0.00 44.77 2.85
4633 5161 2.751806 CAGGAATTCCTCAACAGCCTTC 59.248 50.000 24.67 0.00 46.65 3.46
4634 5162 2.376518 TCAGGAATTCCTCAACAGCCTT 59.623 45.455 24.67 0.00 46.65 4.35
4635 5163 1.988107 TCAGGAATTCCTCAACAGCCT 59.012 47.619 24.67 0.00 46.65 4.58
4636 5164 2.026822 TCTCAGGAATTCCTCAACAGCC 60.027 50.000 24.67 0.00 46.65 4.85
4637 5165 3.340814 TCTCAGGAATTCCTCAACAGC 57.659 47.619 24.67 0.00 46.65 4.40
4638 5166 4.934602 GTCTTCTCAGGAATTCCTCAACAG 59.065 45.833 24.67 16.88 46.65 3.16
4639 5167 4.594920 AGTCTTCTCAGGAATTCCTCAACA 59.405 41.667 24.67 8.26 46.65 3.33
4640 5168 5.159273 AGTCTTCTCAGGAATTCCTCAAC 57.841 43.478 24.67 14.67 46.65 3.18
4641 5169 8.789767 ATATAGTCTTCTCAGGAATTCCTCAA 57.210 34.615 24.67 15.36 46.65 3.02
4642 5170 9.883293 TTATATAGTCTTCTCAGGAATTCCTCA 57.117 33.333 24.67 11.57 46.65 3.86
4645 5173 8.038351 GCCTTATATAGTCTTCTCAGGAATTCC 58.962 40.741 17.31 17.31 0.00 3.01
4646 5174 8.038351 GGCCTTATATAGTCTTCTCAGGAATTC 58.962 40.741 0.00 0.00 0.00 2.17
4647 5175 7.514127 TGGCCTTATATAGTCTTCTCAGGAATT 59.486 37.037 3.32 0.00 0.00 2.17
4648 5176 7.019388 TGGCCTTATATAGTCTTCTCAGGAAT 58.981 38.462 3.32 0.00 0.00 3.01
4649 5177 6.382087 TGGCCTTATATAGTCTTCTCAGGAA 58.618 40.000 3.32 0.00 0.00 3.36
4650 5178 5.965486 TGGCCTTATATAGTCTTCTCAGGA 58.035 41.667 3.32 0.00 0.00 3.86
4651 5179 6.865834 ATGGCCTTATATAGTCTTCTCAGG 57.134 41.667 3.32 0.00 0.00 3.86
4652 5180 9.868277 CTTTATGGCCTTATATAGTCTTCTCAG 57.132 37.037 3.32 0.00 0.00 3.35
4653 5181 8.816894 CCTTTATGGCCTTATATAGTCTTCTCA 58.183 37.037 3.32 0.00 0.00 3.27
4671 5199 3.073062 ACCACTATAGCCAGCCTTTATGG 59.927 47.826 0.00 0.00 41.04 2.74
4672 5200 4.067896 CACCACTATAGCCAGCCTTTATG 58.932 47.826 0.00 0.00 0.00 1.90
4673 5201 3.073062 CCACCACTATAGCCAGCCTTTAT 59.927 47.826 0.00 0.00 0.00 1.40
4674 5202 2.438021 CCACCACTATAGCCAGCCTTTA 59.562 50.000 0.00 0.00 0.00 1.85
4675 5203 1.212935 CCACCACTATAGCCAGCCTTT 59.787 52.381 0.00 0.00 0.00 3.11
4676 5204 0.839946 CCACCACTATAGCCAGCCTT 59.160 55.000 0.00 0.00 0.00 4.35
4677 5205 0.326618 ACCACCACTATAGCCAGCCT 60.327 55.000 0.00 0.00 0.00 4.58
4678 5206 1.420430 TACCACCACTATAGCCAGCC 58.580 55.000 0.00 0.00 0.00 4.85
4679 5207 3.771577 AATACCACCACTATAGCCAGC 57.228 47.619 0.00 0.00 0.00 4.85
4680 5208 8.035394 CAGTTATAATACCACCACTATAGCCAG 58.965 40.741 0.00 0.00 0.00 4.85
4681 5209 7.731235 TCAGTTATAATACCACCACTATAGCCA 59.269 37.037 0.00 0.00 0.00 4.75
4682 5210 8.130671 TCAGTTATAATACCACCACTATAGCC 57.869 38.462 0.00 0.00 0.00 3.93
4689 5217 8.883731 GCATGATATCAGTTATAATACCACCAC 58.116 37.037 11.78 0.00 0.00 4.16
4690 5218 8.601546 TGCATGATATCAGTTATAATACCACCA 58.398 33.333 11.78 0.00 0.00 4.17
4691 5219 9.618890 ATGCATGATATCAGTTATAATACCACC 57.381 33.333 11.78 0.00 0.00 4.61
4698 5226 9.927668 TTCTCGAATGCATGATATCAGTTATAA 57.072 29.630 11.78 0.00 0.00 0.98
4702 5230 9.096160 GATATTCTCGAATGCATGATATCAGTT 57.904 33.333 11.78 3.67 32.50 3.16
4703 5231 8.255905 TGATATTCTCGAATGCATGATATCAGT 58.744 33.333 11.78 0.00 32.50 3.41
4704 5232 8.644318 TGATATTCTCGAATGCATGATATCAG 57.356 34.615 11.78 4.86 32.50 2.90
4705 5233 9.439500 TTTGATATTCTCGAATGCATGATATCA 57.561 29.630 8.10 8.10 32.50 2.15
4706 5234 9.699985 GTTTGATATTCTCGAATGCATGATATC 57.300 33.333 0.00 7.92 32.50 1.63
4707 5235 9.223099 TGTTTGATATTCTCGAATGCATGATAT 57.777 29.630 0.00 0.00 32.50 1.63
4708 5236 8.606040 TGTTTGATATTCTCGAATGCATGATA 57.394 30.769 0.00 0.00 32.50 2.15
4709 5237 7.500720 TGTTTGATATTCTCGAATGCATGAT 57.499 32.000 0.00 0.00 32.50 2.45
4710 5238 6.923928 TGTTTGATATTCTCGAATGCATGA 57.076 33.333 0.00 0.00 32.50 3.07
4711 5239 8.501580 AGTATGTTTGATATTCTCGAATGCATG 58.498 33.333 0.00 0.00 32.50 4.06
4712 5240 8.501580 CAGTATGTTTGATATTCTCGAATGCAT 58.498 33.333 0.00 0.00 32.50 3.96
4713 5241 7.710475 TCAGTATGTTTGATATTCTCGAATGCA 59.290 33.333 2.52 0.00 37.40 3.96
4714 5242 8.076714 TCAGTATGTTTGATATTCTCGAATGC 57.923 34.615 2.52 0.00 37.40 3.56
4724 5252 9.386122 ACCCTCTCTTATCAGTATGTTTGATAT 57.614 33.333 0.00 0.00 37.37 1.63
4725 5253 8.783660 ACCCTCTCTTATCAGTATGTTTGATA 57.216 34.615 0.00 0.00 36.68 2.15
4726 5254 7.682787 ACCCTCTCTTATCAGTATGTTTGAT 57.317 36.000 0.00 0.00 38.70 2.57
4727 5255 7.496346 AACCCTCTCTTATCAGTATGTTTGA 57.504 36.000 0.00 0.00 37.40 2.69
4728 5256 8.696374 TCTAACCCTCTCTTATCAGTATGTTTG 58.304 37.037 0.00 0.00 37.40 2.93
4729 5257 8.840200 TCTAACCCTCTCTTATCAGTATGTTT 57.160 34.615 0.00 0.00 37.40 2.83
4730 5258 9.440761 AATCTAACCCTCTCTTATCAGTATGTT 57.559 33.333 0.00 0.00 37.40 2.71
4734 5262 9.931698 TGTTAATCTAACCCTCTCTTATCAGTA 57.068 33.333 0.00 0.00 37.88 2.74
4735 5263 8.840200 TGTTAATCTAACCCTCTCTTATCAGT 57.160 34.615 0.00 0.00 37.88 3.41
4739 5267 9.900112 ACCTATGTTAATCTAACCCTCTCTTAT 57.100 33.333 0.00 0.00 37.88 1.73
4741 5269 9.369672 CTACCTATGTTAATCTAACCCTCTCTT 57.630 37.037 0.00 0.00 37.88 2.85
4742 5270 8.734763 TCTACCTATGTTAATCTAACCCTCTCT 58.265 37.037 0.00 0.00 37.88 3.10
4743 5271 8.937207 TCTACCTATGTTAATCTAACCCTCTC 57.063 38.462 0.00 0.00 37.88 3.20
4746 5274 9.544579 GGTATCTACCTATGTTAATCTAACCCT 57.455 37.037 0.00 0.00 43.10 4.34
4747 5275 8.465201 CGGTATCTACCTATGTTAATCTAACCC 58.535 40.741 4.93 0.00 44.25 4.11
4748 5276 9.018582 ACGGTATCTACCTATGTTAATCTAACC 57.981 37.037 4.93 0.00 44.25 2.85
4752 5280 9.970553 TGATACGGTATCTACCTATGTTAATCT 57.029 33.333 24.27 0.00 44.25 2.40
4836 5364 9.661563 GAGTAGTGCATAGTATCATAGAGTAGT 57.338 37.037 0.00 0.00 0.00 2.73
4837 5365 9.104965 GGAGTAGTGCATAGTATCATAGAGTAG 57.895 40.741 0.00 0.00 0.00 2.57
4838 5366 8.827758 AGGAGTAGTGCATAGTATCATAGAGTA 58.172 37.037 0.00 0.00 0.00 2.59
4839 5367 7.695055 AGGAGTAGTGCATAGTATCATAGAGT 58.305 38.462 0.00 0.00 0.00 3.24
4840 5368 9.845740 ATAGGAGTAGTGCATAGTATCATAGAG 57.154 37.037 0.00 0.00 0.00 2.43
4841 5369 9.620259 CATAGGAGTAGTGCATAGTATCATAGA 57.380 37.037 0.00 0.00 0.00 1.98
4842 5370 9.620259 TCATAGGAGTAGTGCATAGTATCATAG 57.380 37.037 0.00 0.00 0.00 2.23
4843 5371 9.975218 TTCATAGGAGTAGTGCATAGTATCATA 57.025 33.333 0.00 0.00 0.00 2.15
4844 5372 8.885693 TTCATAGGAGTAGTGCATAGTATCAT 57.114 34.615 0.00 0.00 0.00 2.45
4845 5373 7.394641 CCTTCATAGGAGTAGTGCATAGTATCA 59.605 40.741 0.00 0.00 45.05 2.15
4846 5374 7.394923 ACCTTCATAGGAGTAGTGCATAGTATC 59.605 40.741 0.00 0.00 45.05 2.24
4847 5375 7.242359 ACCTTCATAGGAGTAGTGCATAGTAT 58.758 38.462 0.00 0.00 45.05 2.12
4848 5376 6.611785 ACCTTCATAGGAGTAGTGCATAGTA 58.388 40.000 0.00 0.00 45.05 1.82
4849 5377 5.459505 ACCTTCATAGGAGTAGTGCATAGT 58.540 41.667 0.00 0.00 45.05 2.12
4850 5378 6.717540 ACTACCTTCATAGGAGTAGTGCATAG 59.282 42.308 8.22 0.00 45.05 2.23
4851 5379 6.611785 ACTACCTTCATAGGAGTAGTGCATA 58.388 40.000 8.22 0.00 45.05 3.14
4852 5380 5.459505 ACTACCTTCATAGGAGTAGTGCAT 58.540 41.667 8.22 0.00 45.05 3.96
4853 5381 4.868268 ACTACCTTCATAGGAGTAGTGCA 58.132 43.478 8.22 0.00 45.05 4.57
4854 5382 6.715718 TGATACTACCTTCATAGGAGTAGTGC 59.284 42.308 15.73 10.18 45.05 4.40
4855 5383 8.871629 ATGATACTACCTTCATAGGAGTAGTG 57.128 38.462 15.73 0.00 45.05 2.74
4856 5384 9.962809 GTATGATACTACCTTCATAGGAGTAGT 57.037 37.037 12.35 12.35 45.05 2.73
4857 5385 9.961264 TGTATGATACTACCTTCATAGGAGTAG 57.039 37.037 4.03 3.12 45.05 2.57
4858 5386 9.736414 GTGTATGATACTACCTTCATAGGAGTA 57.264 37.037 4.03 2.86 45.05 2.59
4859 5387 8.449625 AGTGTATGATACTACCTTCATAGGAGT 58.550 37.037 4.03 0.82 45.05 3.85
4860 5388 8.871629 AGTGTATGATACTACCTTCATAGGAG 57.128 38.462 4.03 0.00 45.05 3.69
4861 5389 9.961264 CTAGTGTATGATACTACCTTCATAGGA 57.039 37.037 4.03 0.00 45.05 2.94
4895 5423 9.355916 GGGAGTATCATATACTAGTATCATGCA 57.644 37.037 18.68 1.71 36.25 3.96
4896 5424 8.798402 GGGGAGTATCATATACTAGTATCATGC 58.202 40.741 18.68 12.34 36.25 4.06
4897 5425 9.868160 TGGGGAGTATCATATACTAGTATCATG 57.132 37.037 18.68 17.93 36.25 3.07
4898 5426 9.869667 GTGGGGAGTATCATATACTAGTATCAT 57.130 37.037 18.68 11.67 36.25 2.45
4899 5427 9.070210 AGTGGGGAGTATCATATACTAGTATCA 57.930 37.037 18.68 5.25 36.25 2.15
4900 5428 9.924010 AAGTGGGGAGTATCATATACTAGTATC 57.076 37.037 18.68 3.97 36.25 2.24
4903 5431 9.756571 CTTAAGTGGGGAGTATCATATACTAGT 57.243 37.037 0.00 0.00 36.25 2.57
4904 5432 9.756571 ACTTAAGTGGGGAGTATCATATACTAG 57.243 37.037 7.48 0.00 36.25 2.57
4906 5434 9.756571 CTACTTAAGTGGGGAGTATCATATACT 57.243 37.037 18.56 0.00 36.25 2.12
4907 5435 8.468399 GCTACTTAAGTGGGGAGTATCATATAC 58.532 40.741 18.56 0.00 36.25 1.47
4908 5436 7.618512 GGCTACTTAAGTGGGGAGTATCATATA 59.381 40.741 18.56 0.00 36.25 0.86
4909 5437 6.440965 GGCTACTTAAGTGGGGAGTATCATAT 59.559 42.308 18.56 0.00 36.25 1.78
4910 5438 5.778750 GGCTACTTAAGTGGGGAGTATCATA 59.221 44.000 18.56 0.00 36.25 2.15
4911 5439 4.593634 GGCTACTTAAGTGGGGAGTATCAT 59.406 45.833 18.56 0.00 36.25 2.45
4912 5440 3.965347 GGCTACTTAAGTGGGGAGTATCA 59.035 47.826 18.56 0.00 36.25 2.15
4913 5441 4.224762 AGGCTACTTAAGTGGGGAGTATC 58.775 47.826 18.56 0.52 0.00 2.24
4914 5442 4.282292 AGGCTACTTAAGTGGGGAGTAT 57.718 45.455 18.56 0.00 0.00 2.12
4915 5443 3.771071 AGGCTACTTAAGTGGGGAGTA 57.229 47.619 18.56 0.00 0.00 2.59
4916 5444 2.644060 AGGCTACTTAAGTGGGGAGT 57.356 50.000 18.56 0.00 0.00 3.85
4917 5445 3.388350 CCTTAGGCTACTTAAGTGGGGAG 59.612 52.174 18.56 8.47 0.00 4.30
4918 5446 3.381335 CCTTAGGCTACTTAAGTGGGGA 58.619 50.000 18.56 0.00 0.00 4.81
4919 5447 2.438392 CCCTTAGGCTACTTAAGTGGGG 59.562 54.545 18.56 10.71 0.00 4.96
4920 5448 3.113043 ACCCTTAGGCTACTTAAGTGGG 58.887 50.000 18.56 18.66 36.11 4.61
4921 5449 3.773119 TGACCCTTAGGCTACTTAAGTGG 59.227 47.826 18.56 16.33 36.11 4.00
4922 5450 4.141914 CCTGACCCTTAGGCTACTTAAGTG 60.142 50.000 18.56 9.20 36.11 3.16
4923 5451 4.031611 CCTGACCCTTAGGCTACTTAAGT 58.968 47.826 13.68 13.68 36.11 2.24
4924 5452 4.287552 TCCTGACCCTTAGGCTACTTAAG 58.712 47.826 0.00 0.00 36.11 1.85
4925 5453 4.341863 TCCTGACCCTTAGGCTACTTAA 57.658 45.455 0.00 0.00 36.11 1.85
4926 5454 4.554553 ATCCTGACCCTTAGGCTACTTA 57.445 45.455 0.00 0.00 36.11 2.24
4927 5455 2.942604 TCCTGACCCTTAGGCTACTT 57.057 50.000 0.00 0.00 36.11 2.24
4928 5456 3.751245 CGTATCCTGACCCTTAGGCTACT 60.751 52.174 0.00 0.00 35.68 2.57
4929 5457 2.557490 CGTATCCTGACCCTTAGGCTAC 59.443 54.545 0.00 0.00 34.91 3.58
4930 5458 2.872732 CGTATCCTGACCCTTAGGCTA 58.127 52.381 0.00 0.00 36.11 3.93
4931 5459 1.705873 CGTATCCTGACCCTTAGGCT 58.294 55.000 0.00 0.00 36.11 4.58
4932 5460 0.033642 GCGTATCCTGACCCTTAGGC 59.966 60.000 0.00 0.00 36.11 3.93
4933 5461 0.680061 GGCGTATCCTGACCCTTAGG 59.320 60.000 0.00 0.00 40.04 2.69
4934 5462 1.410004 TGGCGTATCCTGACCCTTAG 58.590 55.000 0.00 0.00 35.26 2.18
4935 5463 1.691976 CATGGCGTATCCTGACCCTTA 59.308 52.381 0.00 0.00 35.26 2.69
4936 5464 0.469917 CATGGCGTATCCTGACCCTT 59.530 55.000 0.00 0.00 35.26 3.95
4937 5465 0.398522 TCATGGCGTATCCTGACCCT 60.399 55.000 0.00 0.00 35.26 4.34
4938 5466 0.687354 ATCATGGCGTATCCTGACCC 59.313 55.000 0.00 0.00 35.26 4.46
4939 5467 1.070758 ACATCATGGCGTATCCTGACC 59.929 52.381 0.00 0.00 35.26 4.02
4940 5468 2.138320 CACATCATGGCGTATCCTGAC 58.862 52.381 0.00 0.00 35.26 3.51
4941 5469 1.541015 GCACATCATGGCGTATCCTGA 60.541 52.381 0.00 0.00 35.26 3.86
4942 5470 0.870393 GCACATCATGGCGTATCCTG 59.130 55.000 0.00 0.00 35.26 3.86
4943 5471 3.312404 GCACATCATGGCGTATCCT 57.688 52.632 0.00 0.00 35.26 3.24
4950 5478 0.452987 ACATTCACGCACATCATGGC 59.547 50.000 0.00 0.00 0.00 4.40
4951 5479 3.683989 GTTACATTCACGCACATCATGG 58.316 45.455 0.00 0.00 0.00 3.66
4952 5480 3.344852 CGTTACATTCACGCACATCATG 58.655 45.455 0.00 0.00 0.00 3.07
4953 5481 3.656651 CGTTACATTCACGCACATCAT 57.343 42.857 0.00 0.00 0.00 2.45
4961 5489 1.418342 CTCGGGGCGTTACATTCACG 61.418 60.000 0.00 0.00 40.75 4.35
4962 5490 0.108520 TCTCGGGGCGTTACATTCAC 60.109 55.000 0.00 0.00 0.00 3.18
4963 5491 0.108520 GTCTCGGGGCGTTACATTCA 60.109 55.000 0.00 0.00 0.00 2.57
4964 5492 0.808847 GGTCTCGGGGCGTTACATTC 60.809 60.000 0.00 0.00 0.00 2.67
4965 5493 1.219935 GGTCTCGGGGCGTTACATT 59.780 57.895 0.00 0.00 0.00 2.71
4966 5494 2.897972 GGTCTCGGGGCGTTACAT 59.102 61.111 0.00 0.00 0.00 2.29
4967 5495 3.751246 CGGTCTCGGGGCGTTACA 61.751 66.667 0.00 0.00 0.00 2.41
4968 5496 3.286915 AACGGTCTCGGGGCGTTAC 62.287 63.158 0.00 0.00 41.39 2.50
4969 5497 2.990967 AACGGTCTCGGGGCGTTA 60.991 61.111 0.00 0.00 41.39 3.18
4970 5498 4.675029 CAACGGTCTCGGGGCGTT 62.675 66.667 0.00 0.00 41.39 4.84
4978 5506 4.681978 ACCTGGCGCAACGGTCTC 62.682 66.667 10.83 0.00 0.00 3.36
4979 5507 4.988598 CACCTGGCGCAACGGTCT 62.989 66.667 10.83 0.00 0.00 3.85
4982 5510 4.988598 AGACACCTGGCGCAACGG 62.989 66.667 10.83 8.66 0.00 4.44
4983 5511 2.954753 GAAGACACCTGGCGCAACG 61.955 63.158 10.83 0.00 0.00 4.10
4984 5512 2.617274 GGAAGACACCTGGCGCAAC 61.617 63.158 10.83 0.00 0.00 4.17
4985 5513 2.281484 GGAAGACACCTGGCGCAA 60.281 61.111 10.83 0.00 0.00 4.85
4986 5514 3.535629 CTGGAAGACACCTGGCGCA 62.536 63.158 10.83 0.00 34.07 6.09
4987 5515 2.743928 CTGGAAGACACCTGGCGC 60.744 66.667 0.00 0.00 34.07 6.53
4988 5516 0.320374 TAACTGGAAGACACCTGGCG 59.680 55.000 0.00 0.00 37.43 5.69
4989 5517 2.789409 ATAACTGGAAGACACCTGGC 57.211 50.000 0.00 0.00 37.43 4.85
4990 5518 3.262420 CGAATAACTGGAAGACACCTGG 58.738 50.000 0.00 0.00 37.43 4.45
4991 5519 2.673368 GCGAATAACTGGAAGACACCTG 59.327 50.000 0.00 0.00 37.43 4.00
4992 5520 2.567615 AGCGAATAACTGGAAGACACCT 59.432 45.455 0.00 0.00 37.43 4.00
4993 5521 2.673368 CAGCGAATAACTGGAAGACACC 59.327 50.000 0.00 0.00 37.43 4.16
4994 5522 3.326747 ACAGCGAATAACTGGAAGACAC 58.673 45.455 0.00 0.00 39.55 3.67
4995 5523 3.678056 ACAGCGAATAACTGGAAGACA 57.322 42.857 0.00 0.00 39.55 3.41
4996 5524 5.358298 AAAACAGCGAATAACTGGAAGAC 57.642 39.130 0.00 0.00 39.55 3.01
4997 5525 5.757886 CAAAAACAGCGAATAACTGGAAGA 58.242 37.500 0.00 0.00 39.55 2.87
4998 5526 4.382754 GCAAAAACAGCGAATAACTGGAAG 59.617 41.667 0.00 0.00 39.55 3.46
4999 5527 4.295051 GCAAAAACAGCGAATAACTGGAA 58.705 39.130 0.00 0.00 39.55 3.53
5000 5528 3.305064 GGCAAAAACAGCGAATAACTGGA 60.305 43.478 0.00 0.00 39.55 3.86
5001 5529 2.986479 GGCAAAAACAGCGAATAACTGG 59.014 45.455 0.00 0.00 39.55 4.00
5002 5530 3.637432 TGGCAAAAACAGCGAATAACTG 58.363 40.909 0.00 0.00 41.08 3.16
5003 5531 4.236935 CATGGCAAAAACAGCGAATAACT 58.763 39.130 0.00 0.00 0.00 2.24
5004 5532 3.987220 ACATGGCAAAAACAGCGAATAAC 59.013 39.130 0.00 0.00 0.00 1.89
5005 5533 4.233789 GACATGGCAAAAACAGCGAATAA 58.766 39.130 0.00 0.00 0.00 1.40
5006 5534 3.254411 TGACATGGCAAAAACAGCGAATA 59.746 39.130 0.00 0.00 0.00 1.75
5007 5535 2.035704 TGACATGGCAAAAACAGCGAAT 59.964 40.909 0.00 0.00 0.00 3.34
5008 5536 1.406898 TGACATGGCAAAAACAGCGAA 59.593 42.857 0.00 0.00 0.00 4.70
5009 5537 1.028130 TGACATGGCAAAAACAGCGA 58.972 45.000 0.00 0.00 0.00 4.93
5010 5538 2.068837 ATGACATGGCAAAAACAGCG 57.931 45.000 4.70 0.00 0.00 5.18
5011 5539 2.409378 CGAATGACATGGCAAAAACAGC 59.591 45.455 4.70 0.00 0.00 4.40
5012 5540 2.409378 GCGAATGACATGGCAAAAACAG 59.591 45.455 4.70 0.00 0.00 3.16
5013 5541 2.035704 AGCGAATGACATGGCAAAAACA 59.964 40.909 4.70 0.00 0.00 2.83
5014 5542 2.676076 AGCGAATGACATGGCAAAAAC 58.324 42.857 4.70 0.00 0.00 2.43
5015 5543 3.058450 CAAGCGAATGACATGGCAAAAA 58.942 40.909 4.70 0.00 0.00 1.94
5016 5544 2.035704 ACAAGCGAATGACATGGCAAAA 59.964 40.909 4.70 0.00 0.00 2.44
5017 5545 1.612950 ACAAGCGAATGACATGGCAAA 59.387 42.857 4.70 0.00 0.00 3.68
5018 5546 1.068402 CACAAGCGAATGACATGGCAA 60.068 47.619 4.70 0.00 0.00 4.52
5019 5547 0.522626 CACAAGCGAATGACATGGCA 59.477 50.000 2.18 2.18 0.00 4.92
5020 5548 0.523072 ACACAAGCGAATGACATGGC 59.477 50.000 0.00 0.00 0.00 4.40
5021 5549 1.536766 ACACACAAGCGAATGACATGG 59.463 47.619 0.00 0.00 0.00 3.66
5022 5550 2.975410 ACACACAAGCGAATGACATG 57.025 45.000 0.00 0.00 0.00 3.21
5023 5551 3.812609 TGTAACACACAAGCGAATGACAT 59.187 39.130 0.00 0.00 32.95 3.06
5024 5552 3.198872 TGTAACACACAAGCGAATGACA 58.801 40.909 0.00 0.00 32.95 3.58
5025 5553 3.870723 TGTAACACACAAGCGAATGAC 57.129 42.857 0.00 0.00 32.95 3.06
5026 5554 4.314961 AGATGTAACACACAAGCGAATGA 58.685 39.130 0.00 0.00 41.55 2.57
5027 5555 4.668576 AGATGTAACACACAAGCGAATG 57.331 40.909 0.00 0.00 41.55 2.67
5028 5556 4.613622 GCAAGATGTAACACACAAGCGAAT 60.614 41.667 0.00 0.00 41.55 3.34
5029 5557 3.303725 GCAAGATGTAACACACAAGCGAA 60.304 43.478 0.00 0.00 41.55 4.70
5030 5558 2.223144 GCAAGATGTAACACACAAGCGA 59.777 45.455 0.00 0.00 41.55 4.93
5031 5559 2.574322 GCAAGATGTAACACACAAGCG 58.426 47.619 0.00 0.00 41.55 4.68
5032 5560 2.293122 TGGCAAGATGTAACACACAAGC 59.707 45.455 0.00 0.00 41.55 4.01
5033 5561 4.022935 ACATGGCAAGATGTAACACACAAG 60.023 41.667 0.00 0.00 41.55 3.16
5034 5562 3.888323 ACATGGCAAGATGTAACACACAA 59.112 39.130 0.00 0.00 41.55 3.33
5035 5563 3.485394 ACATGGCAAGATGTAACACACA 58.515 40.909 0.00 0.00 42.69 3.72
5036 5564 3.501828 TGACATGGCAAGATGTAACACAC 59.498 43.478 0.00 0.00 36.67 3.82
5037 5565 3.749226 TGACATGGCAAGATGTAACACA 58.251 40.909 0.00 0.00 36.67 3.72
5038 5566 4.395854 TGATGACATGGCAAGATGTAACAC 59.604 41.667 4.70 0.00 36.67 3.32
5039 5567 4.587891 TGATGACATGGCAAGATGTAACA 58.412 39.130 4.70 0.00 36.67 2.41
5040 5568 5.516996 CATGATGACATGGCAAGATGTAAC 58.483 41.667 4.70 0.00 46.95 2.50
5041 5569 5.761165 CATGATGACATGGCAAGATGTAA 57.239 39.130 4.70 0.00 46.95 2.41
5053 5581 6.488683 TGATGATGTTATGCACATGATGACAT 59.511 34.615 0.00 5.24 46.96 3.06
5054 5582 5.823570 TGATGATGTTATGCACATGATGACA 59.176 36.000 0.00 0.00 46.96 3.58
5055 5583 6.308371 TGATGATGTTATGCACATGATGAC 57.692 37.500 0.00 0.00 46.96 3.06
5056 5584 6.488683 ACATGATGATGTTATGCACATGATGA 59.511 34.615 15.58 0.00 46.96 2.92
5057 5585 6.677913 ACATGATGATGTTATGCACATGATG 58.322 36.000 13.22 11.33 46.96 3.07
5058 5586 6.894339 ACATGATGATGTTATGCACATGAT 57.106 33.333 13.22 1.91 46.96 2.45
5070 5598 6.762187 TGCAAGTTTTGAAAACATGATGATGT 59.238 30.769 24.72 0.00 45.24 3.06
5071 5599 7.179927 TGCAAGTTTTGAAAACATGATGATG 57.820 32.000 24.72 11.99 35.49 3.07
5072 5600 7.118680 GGATGCAAGTTTTGAAAACATGATGAT 59.881 33.333 24.72 14.51 0.00 2.45
5073 5601 6.424509 GGATGCAAGTTTTGAAAACATGATGA 59.575 34.615 24.72 11.16 0.00 2.92
5074 5602 6.595794 GGATGCAAGTTTTGAAAACATGATG 58.404 36.000 24.72 16.65 0.00 3.07
5075 5603 5.406175 CGGATGCAAGTTTTGAAAACATGAT 59.594 36.000 24.72 16.18 0.00 2.45
5076 5604 4.744137 CGGATGCAAGTTTTGAAAACATGA 59.256 37.500 24.72 12.98 0.00 3.07
5077 5605 4.507388 ACGGATGCAAGTTTTGAAAACATG 59.493 37.500 21.34 19.83 0.00 3.21
5078 5606 4.692228 ACGGATGCAAGTTTTGAAAACAT 58.308 34.783 21.34 8.10 0.00 2.71
5079 5607 4.109050 GACGGATGCAAGTTTTGAAAACA 58.891 39.130 21.34 2.60 0.00 2.83
5080 5608 3.489416 GGACGGATGCAAGTTTTGAAAAC 59.511 43.478 12.62 12.62 0.00 2.43
5081 5609 3.712187 GGACGGATGCAAGTTTTGAAAA 58.288 40.909 0.00 0.00 0.00 2.29
5082 5610 2.287308 CGGACGGATGCAAGTTTTGAAA 60.287 45.455 0.00 0.00 0.00 2.69
5083 5611 1.265635 CGGACGGATGCAAGTTTTGAA 59.734 47.619 0.00 0.00 0.00 2.69
5084 5612 0.871722 CGGACGGATGCAAGTTTTGA 59.128 50.000 0.00 0.00 0.00 2.69
5085 5613 0.109781 CCGGACGGATGCAAGTTTTG 60.110 55.000 4.40 0.00 37.50 2.44
5086 5614 1.241315 CCCGGACGGATGCAAGTTTT 61.241 55.000 13.13 0.00 37.50 2.43
5087 5615 1.674322 CCCGGACGGATGCAAGTTT 60.674 57.895 13.13 0.00 37.50 2.66
5088 5616 2.046314 CCCGGACGGATGCAAGTT 60.046 61.111 13.13 0.00 37.50 2.66
5089 5617 2.890766 AACCCGGACGGATGCAAGT 61.891 57.895 13.13 0.00 37.50 3.16
5090 5618 2.046314 AACCCGGACGGATGCAAG 60.046 61.111 13.13 0.00 37.50 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.