Multiple sequence alignment - TraesCS3A01G389700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G389700 chr3A 100.000 2720 0 0 1 2720 638202056 638199337 0.000000e+00 5024.0
1 TraesCS3A01G389700 chr3B 91.887 1516 82 18 448 1942 655637882 655639377 0.000000e+00 2080.0
2 TraesCS3A01G389700 chr3B 84.820 527 49 12 1958 2456 655639363 655639886 4.040000e-138 501.0
3 TraesCS3A01G389700 chr3B 97.531 243 5 1 206 448 655637588 655637829 5.420000e-112 414.0
4 TraesCS3A01G389700 chr3B 91.379 232 17 2 2454 2684 146820720 146820949 5.650000e-82 315.0
5 TraesCS3A01G389700 chr3B 96.774 124 3 1 1 124 655637467 655637589 3.550000e-49 206.0
6 TraesCS3A01G389700 chr3D 89.191 1693 95 45 448 2110 496682072 496683706 0.000000e+00 2032.0
7 TraesCS3A01G389700 chr3D 87.243 243 24 5 213 449 496681777 496682018 1.240000e-68 270.0
8 TraesCS3A01G389700 chr3D 91.200 125 7 3 2332 2456 496686022 496686142 1.680000e-37 167.0
9 TraesCS3A01G389700 chr3D 88.060 134 11 2 2141 2269 496684731 496684864 1.300000e-33 154.0
10 TraesCS3A01G389700 chr3D 92.661 109 3 5 104 207 531382505 531382397 4.690000e-33 152.0
11 TraesCS3A01G389700 chr2D 95.690 232 10 0 2454 2685 275001649 275001880 9.200000e-100 374.0
12 TraesCS3A01G389700 chr4D 95.671 231 10 0 2454 2684 37607453 37607683 3.310000e-99 372.0
13 TraesCS3A01G389700 chr4D 92.661 109 3 5 104 207 494781678 494781786 4.690000e-33 152.0
14 TraesCS3A01G389700 chr4D 92.661 109 3 5 104 207 494801270 494801378 4.690000e-33 152.0
15 TraesCS3A01G389700 chr2A 93.991 233 13 1 2454 2685 66306216 66305984 4.310000e-93 351.0
16 TraesCS3A01G389700 chr2A 91.954 174 14 0 2511 2684 17808964 17809137 7.520000e-61 244.0
17 TraesCS3A01G389700 chr4A 91.416 233 17 2 2454 2684 650826343 650826574 1.570000e-82 316.0
18 TraesCS3A01G389700 chr4A 91.623 191 16 0 2493 2683 276908839 276909029 5.770000e-67 265.0
19 TraesCS3A01G389700 chr7D 92.105 114 3 6 104 212 538028530 538028642 3.630000e-34 156.0
20 TraesCS3A01G389700 chr7D 94.175 103 4 2 112 212 568011034 568011136 3.630000e-34 156.0
21 TraesCS3A01G389700 chr7D 92.661 109 3 5 104 207 563470351 563470243 4.690000e-33 152.0
22 TraesCS3A01G389700 chr5D 95.876 97 3 1 113 208 273556553 273556649 3.630000e-34 156.0
23 TraesCS3A01G389700 chr5B 95.833 96 2 2 123 217 470992281 470992375 1.300000e-33 154.0
24 TraesCS3A01G389700 chr6D 92.661 109 3 5 104 207 333950627 333950519 4.690000e-33 152.0
25 TraesCS3A01G389700 chr7A 93.204 103 6 1 2583 2684 64929086 64929188 1.690000e-32 150.0
26 TraesCS3A01G389700 chr1D 76.796 181 33 8 2508 2683 20086839 20087015 2.880000e-15 93.5
27 TraesCS3A01G389700 chr1A 77.876 113 21 4 2457 2567 578351045 578351155 1.750000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G389700 chr3A 638199337 638202056 2719 True 5024.00 5024 100.0000 1 2720 1 chr3A.!!$R1 2719
1 TraesCS3A01G389700 chr3B 655637467 655639886 2419 False 800.25 2080 92.7530 1 2456 4 chr3B.!!$F2 2455
2 TraesCS3A01G389700 chr3D 496681777 496686142 4365 False 655.75 2032 88.9235 213 2456 4 chr3D.!!$F1 2243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 719 0.456482 TTTTGCATCAAGATGGCGCG 60.456 50.0 0.0 0.0 39.16 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2529 4732 0.107945 GCCTCGACATTCAAGCTCCT 60.108 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.829533 CTGTGTTTGTGGCCCTGCT 60.830 57.895 0.00 0.00 0.00 4.24
41 42 1.202989 TGTTTGTGGCCCTGCTTATCA 60.203 47.619 0.00 0.00 0.00 2.15
47 48 1.098050 GGCCCTGCTTATCAACACAG 58.902 55.000 0.00 0.00 0.00 3.66
62 63 3.744940 ACACAGTTGAATCCCCATCAT 57.255 42.857 0.00 0.00 0.00 2.45
133 134 7.844493 TGTTATTGTATTATACTCCCTCCGT 57.156 36.000 3.92 0.00 0.00 4.69
134 135 8.253867 TGTTATTGTATTATACTCCCTCCGTT 57.746 34.615 3.92 0.00 0.00 4.44
135 136 8.362639 TGTTATTGTATTATACTCCCTCCGTTC 58.637 37.037 3.92 0.00 0.00 3.95
136 137 5.796424 TTGTATTATACTCCCTCCGTTCC 57.204 43.478 3.92 0.00 0.00 3.62
137 138 4.806892 TGTATTATACTCCCTCCGTTCCA 58.193 43.478 3.92 0.00 0.00 3.53
138 139 5.210430 TGTATTATACTCCCTCCGTTCCAA 58.790 41.667 3.92 0.00 0.00 3.53
139 140 5.662208 TGTATTATACTCCCTCCGTTCCAAA 59.338 40.000 3.92 0.00 0.00 3.28
140 141 5.906772 ATTATACTCCCTCCGTTCCAAAT 57.093 39.130 0.00 0.00 0.00 2.32
141 142 5.703730 TTATACTCCCTCCGTTCCAAATT 57.296 39.130 0.00 0.00 0.00 1.82
142 143 6.811634 TTATACTCCCTCCGTTCCAAATTA 57.188 37.500 0.00 0.00 0.00 1.40
143 144 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
144 145 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
145 146 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
146 147 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
147 148 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
148 149 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
149 150 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
150 151 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
151 152 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
152 153 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
153 154 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
154 155 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
155 156 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
156 157 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
157 158 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
158 159 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
159 160 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
160 161 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
161 162 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
162 163 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
163 164 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
164 165 4.374399 ACTCGTCGTGGTTTTAGTTCAAT 58.626 39.130 0.00 0.00 0.00 2.57
165 166 4.812626 ACTCGTCGTGGTTTTAGTTCAATT 59.187 37.500 0.00 0.00 0.00 2.32
166 167 5.295045 ACTCGTCGTGGTTTTAGTTCAATTT 59.705 36.000 0.00 0.00 0.00 1.82
167 168 5.503498 TCGTCGTGGTTTTAGTTCAATTTG 58.497 37.500 0.00 0.00 0.00 2.32
168 169 5.293814 TCGTCGTGGTTTTAGTTCAATTTGA 59.706 36.000 0.00 0.00 0.00 2.69
169 170 5.966503 CGTCGTGGTTTTAGTTCAATTTGAA 59.033 36.000 7.74 7.74 33.32 2.69
183 184 5.503498 TCAATTTGAACTAAAACCACGACG 58.497 37.500 0.00 0.00 0.00 5.12
184 185 5.293814 TCAATTTGAACTAAAACCACGACGA 59.706 36.000 0.00 0.00 0.00 4.20
185 186 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
186 187 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
187 188 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
188 189 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
189 190 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
190 191 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
191 192 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
192 193 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
193 194 5.984926 ACTAAAACCACGACGAGTAATTTGA 59.015 36.000 0.00 0.00 0.00 2.69
194 195 5.738118 AAAACCACGACGAGTAATTTGAA 57.262 34.783 0.00 0.00 0.00 2.69
195 196 5.738118 AAACCACGACGAGTAATTTGAAA 57.262 34.783 0.00 0.00 0.00 2.69
196 197 4.720530 ACCACGACGAGTAATTTGAAAC 57.279 40.909 0.00 0.00 0.00 2.78
197 198 3.182972 ACCACGACGAGTAATTTGAAACG 59.817 43.478 0.00 0.00 0.00 3.60
198 199 3.422603 CCACGACGAGTAATTTGAAACGG 60.423 47.826 0.00 0.00 0.00 4.44
199 200 3.426191 CACGACGAGTAATTTGAAACGGA 59.574 43.478 0.00 0.00 0.00 4.69
200 201 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
201 202 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
202 203 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
203 204 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
204 205 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
414 421 6.357367 ACTAACAGGTGACTTGTTCAGATTT 58.643 36.000 16.52 0.00 40.21 2.17
440 447 3.458487 ACTGTCCAGACCACCTAAAAACT 59.542 43.478 0.40 0.00 0.00 2.66
469 531 6.759272 TCTATGTTACTCTTGTGAAAGCACT 58.241 36.000 0.00 0.00 45.36 4.40
482 544 5.295787 TGTGAAAGCACTAAATTTGACTCGT 59.704 36.000 0.00 0.00 45.36 4.18
485 547 6.037720 TGAAAGCACTAAATTTGACTCGTGAA 59.962 34.615 0.00 0.00 0.00 3.18
564 635 9.185192 AGCAAAAATACTTTTCTTCTCAAATCG 57.815 29.630 0.00 0.00 32.24 3.34
570 641 5.514279 ACTTTTCTTCTCAAATCGCAACAG 58.486 37.500 0.00 0.00 0.00 3.16
572 643 2.493035 TCTTCTCAAATCGCAACAGCA 58.507 42.857 0.00 0.00 0.00 4.41
645 719 0.456482 TTTTGCATCAAGATGGCGCG 60.456 50.000 0.00 0.00 39.16 6.86
646 720 2.870667 TTTGCATCAAGATGGCGCGC 62.871 55.000 25.94 25.94 39.16 6.86
660 734 1.061570 CGCGCTTCTCATTGCTTCC 59.938 57.895 5.56 0.00 0.00 3.46
690 764 9.677567 CTCAAGTAAGTTATCTCTAATGCTCTC 57.322 37.037 0.00 0.00 0.00 3.20
691 765 9.415008 TCAAGTAAGTTATCTCTAATGCTCTCT 57.585 33.333 0.00 0.00 0.00 3.10
694 768 8.995220 AGTAAGTTATCTCTAATGCTCTCTACG 58.005 37.037 0.00 0.00 0.00 3.51
776 850 4.815308 CACATATCCTCTCTGCCTTTTCTG 59.185 45.833 0.00 0.00 0.00 3.02
777 851 2.416680 ATCCTCTCTGCCTTTTCTGC 57.583 50.000 0.00 0.00 0.00 4.26
880 954 4.889409 TGTCTCCAAAACTTTTGCATCTCT 59.111 37.500 8.53 0.00 0.00 3.10
952 1030 0.886490 GTCACAACCTCCACAGCCAG 60.886 60.000 0.00 0.00 0.00 4.85
953 1031 2.113986 ACAACCTCCACAGCCAGC 59.886 61.111 0.00 0.00 0.00 4.85
969 1047 1.476891 CCAGCCACGTACATGTAGTCT 59.523 52.381 5.62 0.00 0.00 3.24
975 1053 3.312973 CCACGTACATGTAGTCTCTCCTC 59.687 52.174 5.62 0.00 0.00 3.71
977 1055 3.118847 ACGTACATGTAGTCTCTCCTCGA 60.119 47.826 5.62 0.00 0.00 4.04
980 1058 1.003331 CATGTAGTCTCTCCTCGACGC 60.003 57.143 0.00 0.00 36.53 5.19
984 1062 1.178276 AGTCTCTCCTCGACGCAAAT 58.822 50.000 0.00 0.00 36.53 2.32
985 1063 1.133407 AGTCTCTCCTCGACGCAAATC 59.867 52.381 0.00 0.00 36.53 2.17
1026 1104 3.564027 CGCCGATCAAACCCGAGC 61.564 66.667 0.00 0.00 0.00 5.03
1053 1131 1.216710 CGTCTCAAGACTGGAGGCC 59.783 63.158 5.86 0.00 42.66 5.19
1269 1353 2.126071 CACACCTACGACGGCAGG 60.126 66.667 14.30 14.30 37.97 4.85
1293 1377 4.314440 TTCGCGGTCCTTGCAGCT 62.314 61.111 6.13 0.00 0.00 4.24
1387 1471 4.210093 TCCGTGACACGTGCGGTT 62.210 61.111 25.54 4.61 45.11 4.44
1390 1474 3.698463 GTGACACGTGCGGTTCCG 61.698 66.667 17.22 6.90 0.00 4.30
1431 1515 2.032681 GAAGCAGTGTCCGGCCTT 59.967 61.111 0.00 0.00 31.47 4.35
1445 1529 2.972505 CCTTGTGCGGCAGTTCGT 60.973 61.111 1.18 0.00 0.00 3.85
1495 1579 2.664851 CGGCTGCAAACTCGGTGA 60.665 61.111 0.50 0.00 0.00 4.02
1527 1611 2.456119 CGGTTCATGGAGCGAGCAC 61.456 63.158 20.95 0.00 42.69 4.40
1528 1612 1.375908 GGTTCATGGAGCGAGCACA 60.376 57.895 0.00 0.00 0.00 4.57
1783 1875 2.251600 ACGAAGGCTTCTACGTCGT 58.748 52.632 23.74 14.15 45.47 4.34
1784 1876 0.167689 ACGAAGGCTTCTACGTCGTC 59.832 55.000 23.74 0.00 46.93 4.20
1785 1877 0.447011 CGAAGGCTTCTACGTCGTCT 59.553 55.000 23.74 0.00 35.61 4.18
1786 1878 1.135746 CGAAGGCTTCTACGTCGTCTT 60.136 52.381 23.74 0.00 35.61 3.01
1848 1947 6.556874 AGATCCATCTAGGGAAGAAACTAAGG 59.443 42.308 0.00 0.00 41.12 2.69
1891 1991 6.790825 GCTGCTCGACGATTAATTTAATTACC 59.209 38.462 0.00 0.00 0.00 2.85
1938 2044 2.094752 TCTCATGCTTCGTTCATCGTCA 60.095 45.455 0.00 0.00 40.80 4.35
1940 2046 2.604462 TCATGCTTCGTTCATCGTCATG 59.396 45.455 0.00 0.00 40.29 3.07
1941 2047 2.078849 TGCTTCGTTCATCGTCATGT 57.921 45.000 0.00 0.00 40.80 3.21
1942 2048 1.726248 TGCTTCGTTCATCGTCATGTG 59.274 47.619 0.00 0.00 40.80 3.21
1943 2049 1.726791 GCTTCGTTCATCGTCATGTGT 59.273 47.619 0.00 0.00 40.80 3.72
1944 2050 2.921121 GCTTCGTTCATCGTCATGTGTA 59.079 45.455 0.00 0.00 40.80 2.90
1945 2051 3.366724 GCTTCGTTCATCGTCATGTGTAA 59.633 43.478 0.00 0.00 40.80 2.41
1946 2052 4.143200 GCTTCGTTCATCGTCATGTGTAAA 60.143 41.667 0.00 0.00 40.80 2.01
1947 2053 5.613795 GCTTCGTTCATCGTCATGTGTAAAA 60.614 40.000 0.00 0.00 40.80 1.52
1948 2054 6.474819 TTCGTTCATCGTCATGTGTAAAAT 57.525 33.333 0.00 0.00 40.80 1.82
1949 2055 6.089920 TCGTTCATCGTCATGTGTAAAATC 57.910 37.500 0.00 0.00 40.80 2.17
1965 2071 3.703001 AAATCGTGGAAGTGGTCATCT 57.297 42.857 0.00 0.00 0.00 2.90
1993 2099 5.538053 TGTCCAAATAACAAATGGCAGAAGA 59.462 36.000 0.00 0.00 34.13 2.87
2011 2117 5.628193 CAGAAGATTGTTGTGAATTGTCAGC 59.372 40.000 0.00 0.00 33.27 4.26
2017 2123 4.392047 TGTTGTGAATTGTCAGCTCATCT 58.608 39.130 0.00 0.00 33.27 2.90
2022 2128 4.456911 GTGAATTGTCAGCTCATCTTTGGA 59.543 41.667 0.00 0.00 33.27 3.53
2030 2136 1.064654 GCTCATCTTTGGAACGATGCC 59.935 52.381 0.00 0.00 37.52 4.40
2031 2137 1.328680 CTCATCTTTGGAACGATGCCG 59.671 52.381 0.00 0.00 37.52 5.69
2075 2184 4.265904 TCTGTCGGCATGTCTTCTTTTA 57.734 40.909 0.00 0.00 0.00 1.52
2076 2185 4.832248 TCTGTCGGCATGTCTTCTTTTAT 58.168 39.130 0.00 0.00 0.00 1.40
2077 2186 4.631377 TCTGTCGGCATGTCTTCTTTTATG 59.369 41.667 0.00 0.00 0.00 1.90
2080 2189 3.374988 TCGGCATGTCTTCTTTTATGCAG 59.625 43.478 9.83 6.19 45.73 4.41
2096 2205 3.560251 AGCCGGCCTGTCACAAGT 61.560 61.111 26.15 0.00 0.00 3.16
2131 2954 5.183014 ACCGAAATTTGTTCAGGACTTTC 57.817 39.130 0.00 0.00 0.00 2.62
2139 2962 1.604278 GTTCAGGACTTTCAGGTGCAC 59.396 52.381 8.80 8.80 0.00 4.57
2221 3328 1.749638 GCATCTGGCTCTGCTGCTT 60.750 57.895 0.00 0.00 40.25 3.91
2223 3330 1.297664 CATCTGGCTCTGCTGCTTAC 58.702 55.000 0.00 0.00 0.00 2.34
2237 3344 1.945776 GCTTACGCACGTCTGCAGAC 61.946 60.000 32.73 32.73 44.50 3.51
2260 3367 4.268359 GGCAACTCCATGAAATCTCTCTT 58.732 43.478 0.00 0.00 34.01 2.85
2261 3368 4.096081 GGCAACTCCATGAAATCTCTCTTG 59.904 45.833 0.00 0.00 34.01 3.02
2262 3369 4.699257 GCAACTCCATGAAATCTCTCTTGT 59.301 41.667 0.00 0.00 0.00 3.16
2263 3370 5.163774 GCAACTCCATGAAATCTCTCTTGTC 60.164 44.000 0.00 0.00 0.00 3.18
2264 3371 5.752036 ACTCCATGAAATCTCTCTTGTCA 57.248 39.130 0.00 0.00 0.00 3.58
2265 3372 6.310764 ACTCCATGAAATCTCTCTTGTCAT 57.689 37.500 0.00 0.00 0.00 3.06
2266 3373 6.114089 ACTCCATGAAATCTCTCTTGTCATG 58.886 40.000 0.00 5.22 43.32 3.07
2278 4187 0.952984 TTGTCATGACAATGGCGCGA 60.953 50.000 32.36 12.34 45.42 5.87
2283 4192 1.378882 ATGACAATGGCGCGATGCTT 61.379 50.000 12.10 0.00 45.43 3.91
2291 4200 0.588252 GGCGCGATGCTTGTGATAAT 59.412 50.000 12.10 0.00 45.43 1.28
2305 4214 6.478344 GCTTGTGATAATCCAGTAGAGAACAG 59.522 42.308 0.00 0.00 0.00 3.16
2307 4216 4.979197 GTGATAATCCAGTAGAGAACAGCG 59.021 45.833 0.00 0.00 0.00 5.18
2357 4560 7.833285 ATTTAGGGTGATTGTGTACTTTGTT 57.167 32.000 0.00 0.00 0.00 2.83
2389 4592 1.153353 GCTAGCCGCAAAGTACACAA 58.847 50.000 2.29 0.00 38.92 3.33
2390 4593 1.737793 GCTAGCCGCAAAGTACACAAT 59.262 47.619 2.29 0.00 38.92 2.71
2442 4645 1.551791 GGGCCCAGGTACCGATAGTAT 60.552 57.143 19.95 0.00 32.28 2.12
2456 4659 0.596577 TAGTATCCGGCATGCGAGTC 59.403 55.000 12.44 0.00 0.00 3.36
2457 4660 1.109920 AGTATCCGGCATGCGAGTCT 61.110 55.000 12.44 4.36 0.00 3.24
2458 4661 0.596577 GTATCCGGCATGCGAGTCTA 59.403 55.000 12.44 0.00 0.00 2.59
2459 4662 1.202582 GTATCCGGCATGCGAGTCTAT 59.797 52.381 12.44 1.99 0.00 1.98
2460 4663 0.037882 ATCCGGCATGCGAGTCTATG 60.038 55.000 12.44 0.00 0.00 2.23
2461 4664 1.665916 CCGGCATGCGAGTCTATGG 60.666 63.158 12.44 0.00 0.00 2.74
2462 4665 1.363807 CGGCATGCGAGTCTATGGA 59.636 57.895 12.44 0.00 0.00 3.41
2463 4666 0.665670 CGGCATGCGAGTCTATGGAG 60.666 60.000 12.44 0.00 0.00 3.86
2464 4667 0.948141 GGCATGCGAGTCTATGGAGC 60.948 60.000 12.44 0.00 0.00 4.70
2465 4668 1.280886 GCATGCGAGTCTATGGAGCG 61.281 60.000 0.00 0.00 0.00 5.03
2466 4669 0.312102 CATGCGAGTCTATGGAGCGA 59.688 55.000 5.60 0.00 0.00 4.93
2467 4670 1.067985 CATGCGAGTCTATGGAGCGAT 60.068 52.381 5.60 0.00 0.00 4.58
2468 4671 1.032794 TGCGAGTCTATGGAGCGATT 58.967 50.000 5.60 0.00 0.00 3.34
2469 4672 2.227194 TGCGAGTCTATGGAGCGATTA 58.773 47.619 5.60 0.00 0.00 1.75
2470 4673 2.820197 TGCGAGTCTATGGAGCGATTAT 59.180 45.455 5.60 0.00 0.00 1.28
2471 4674 4.007659 TGCGAGTCTATGGAGCGATTATA 58.992 43.478 5.60 0.00 0.00 0.98
2472 4675 4.142665 TGCGAGTCTATGGAGCGATTATAC 60.143 45.833 5.60 0.00 0.00 1.47
2473 4676 4.142665 GCGAGTCTATGGAGCGATTATACA 60.143 45.833 5.60 0.00 0.00 2.29
2474 4677 5.449314 GCGAGTCTATGGAGCGATTATACAT 60.449 44.000 5.60 0.00 0.00 2.29
2475 4678 5.968261 CGAGTCTATGGAGCGATTATACATG 59.032 44.000 0.00 0.00 0.00 3.21
2476 4679 6.183360 CGAGTCTATGGAGCGATTATACATGA 60.183 42.308 0.00 0.00 0.00 3.07
2477 4680 7.468141 AGTCTATGGAGCGATTATACATGAA 57.532 36.000 0.00 0.00 0.00 2.57
2478 4681 7.896811 AGTCTATGGAGCGATTATACATGAAA 58.103 34.615 0.00 0.00 0.00 2.69
2479 4682 8.535335 AGTCTATGGAGCGATTATACATGAAAT 58.465 33.333 0.00 0.00 0.00 2.17
2480 4683 9.803315 GTCTATGGAGCGATTATACATGAAATA 57.197 33.333 0.00 0.00 0.00 1.40
2482 4685 6.968131 TGGAGCGATTATACATGAAATAGC 57.032 37.500 0.00 8.24 34.94 2.97
2483 4686 6.463360 TGGAGCGATTATACATGAAATAGCA 58.537 36.000 18.87 4.93 36.52 3.49
2484 4687 6.591448 TGGAGCGATTATACATGAAATAGCAG 59.409 38.462 18.87 6.90 36.52 4.24
2485 4688 6.813649 GGAGCGATTATACATGAAATAGCAGA 59.186 38.462 18.87 0.00 36.52 4.26
2486 4689 7.331934 GGAGCGATTATACATGAAATAGCAGAA 59.668 37.037 18.87 0.53 36.52 3.02
2487 4690 8.023050 AGCGATTATACATGAAATAGCAGAAC 57.977 34.615 18.87 0.00 36.52 3.01
2488 4691 7.657354 AGCGATTATACATGAAATAGCAGAACA 59.343 33.333 18.87 0.00 36.52 3.18
2489 4692 8.446273 GCGATTATACATGAAATAGCAGAACAT 58.554 33.333 0.00 0.00 34.87 2.71
2494 4697 8.839310 ATACATGAAATAGCAGAACATAGGTC 57.161 34.615 0.00 0.00 0.00 3.85
2495 4698 6.653020 ACATGAAATAGCAGAACATAGGTCA 58.347 36.000 0.00 0.00 0.00 4.02
2496 4699 7.112122 ACATGAAATAGCAGAACATAGGTCAA 58.888 34.615 0.00 0.00 0.00 3.18
2497 4700 7.611467 ACATGAAATAGCAGAACATAGGTCAAA 59.389 33.333 0.00 0.00 0.00 2.69
2498 4701 8.627403 CATGAAATAGCAGAACATAGGTCAAAT 58.373 33.333 0.00 0.00 0.00 2.32
2499 4702 8.579850 TGAAATAGCAGAACATAGGTCAAATT 57.420 30.769 0.00 0.00 0.00 1.82
2500 4703 9.023962 TGAAATAGCAGAACATAGGTCAAATTT 57.976 29.630 0.00 0.00 0.00 1.82
2501 4704 9.860898 GAAATAGCAGAACATAGGTCAAATTTT 57.139 29.630 0.00 0.00 0.00 1.82
2502 4705 9.860898 AAATAGCAGAACATAGGTCAAATTTTC 57.139 29.630 0.00 0.00 0.00 2.29
2503 4706 6.899393 AGCAGAACATAGGTCAAATTTTCA 57.101 33.333 0.00 0.00 0.00 2.69
2504 4707 7.472334 AGCAGAACATAGGTCAAATTTTCAT 57.528 32.000 0.00 0.00 0.00 2.57
2505 4708 8.579850 AGCAGAACATAGGTCAAATTTTCATA 57.420 30.769 0.00 0.00 0.00 2.15
2506 4709 8.462016 AGCAGAACATAGGTCAAATTTTCATAC 58.538 33.333 0.00 0.00 0.00 2.39
2507 4710 8.462016 GCAGAACATAGGTCAAATTTTCATACT 58.538 33.333 0.00 0.00 0.00 2.12
2531 4734 9.396022 ACTTGTAATATTGGTCATGAGTTTAGG 57.604 33.333 0.00 0.00 0.00 2.69
2532 4735 9.613428 CTTGTAATATTGGTCATGAGTTTAGGA 57.387 33.333 0.00 0.00 0.00 2.94
2533 4736 9.613428 TTGTAATATTGGTCATGAGTTTAGGAG 57.387 33.333 0.00 0.00 0.00 3.69
2534 4737 7.715249 TGTAATATTGGTCATGAGTTTAGGAGC 59.285 37.037 0.00 0.00 0.00 4.70
2535 4738 4.851639 ATTGGTCATGAGTTTAGGAGCT 57.148 40.909 0.00 0.00 30.92 4.09
2536 4739 4.640771 TTGGTCATGAGTTTAGGAGCTT 57.359 40.909 0.00 0.00 30.92 3.74
2537 4740 3.942829 TGGTCATGAGTTTAGGAGCTTG 58.057 45.455 0.00 0.00 30.92 4.01
2538 4741 3.582647 TGGTCATGAGTTTAGGAGCTTGA 59.417 43.478 0.00 0.00 30.92 3.02
2539 4742 4.041567 TGGTCATGAGTTTAGGAGCTTGAA 59.958 41.667 0.00 0.00 30.92 2.69
2540 4743 5.189180 GGTCATGAGTTTAGGAGCTTGAAT 58.811 41.667 0.00 0.00 0.00 2.57
2541 4744 5.065731 GGTCATGAGTTTAGGAGCTTGAATG 59.934 44.000 0.00 0.00 0.00 2.67
2542 4745 5.645497 GTCATGAGTTTAGGAGCTTGAATGT 59.355 40.000 0.00 0.00 0.00 2.71
2543 4746 5.877012 TCATGAGTTTAGGAGCTTGAATGTC 59.123 40.000 0.00 0.00 0.00 3.06
2544 4747 4.245660 TGAGTTTAGGAGCTTGAATGTCG 58.754 43.478 0.00 0.00 0.00 4.35
2545 4748 4.021456 TGAGTTTAGGAGCTTGAATGTCGA 60.021 41.667 0.00 0.00 0.00 4.20
2546 4749 4.499183 AGTTTAGGAGCTTGAATGTCGAG 58.501 43.478 0.00 0.00 0.00 4.04
2547 4750 3.526931 TTAGGAGCTTGAATGTCGAGG 57.473 47.619 0.00 0.00 0.00 4.63
2548 4751 0.107945 AGGAGCTTGAATGTCGAGGC 60.108 55.000 0.00 0.00 0.00 4.70
2549 4752 0.107945 GGAGCTTGAATGTCGAGGCT 60.108 55.000 0.00 0.00 0.00 4.58
2550 4753 1.677217 GGAGCTTGAATGTCGAGGCTT 60.677 52.381 0.00 0.00 0.00 4.35
2551 4754 2.418746 GGAGCTTGAATGTCGAGGCTTA 60.419 50.000 0.00 0.00 0.00 3.09
2552 4755 2.605366 GAGCTTGAATGTCGAGGCTTAC 59.395 50.000 0.00 0.00 0.00 2.34
2553 4756 2.028112 AGCTTGAATGTCGAGGCTTACA 60.028 45.455 6.15 6.15 0.00 2.41
2554 4757 2.742053 GCTTGAATGTCGAGGCTTACAA 59.258 45.455 7.58 0.00 0.00 2.41
2555 4758 3.181516 GCTTGAATGTCGAGGCTTACAAG 60.182 47.826 7.58 0.00 37.24 3.16
2578 4781 3.065575 CGAAGCACGCTTTATCCCT 57.934 52.632 5.63 0.00 36.26 4.20
2579 4782 2.218953 CGAAGCACGCTTTATCCCTA 57.781 50.000 5.63 0.00 36.26 3.53
2580 4783 1.859080 CGAAGCACGCTTTATCCCTAC 59.141 52.381 5.63 0.00 36.26 3.18
2581 4784 2.210961 GAAGCACGCTTTATCCCTACC 58.789 52.381 5.63 0.00 36.26 3.18
2582 4785 1.200519 AGCACGCTTTATCCCTACCA 58.799 50.000 0.00 0.00 0.00 3.25
2583 4786 1.139058 AGCACGCTTTATCCCTACCAG 59.861 52.381 0.00 0.00 0.00 4.00
2584 4787 1.583054 CACGCTTTATCCCTACCAGC 58.417 55.000 0.00 0.00 0.00 4.85
2585 4788 1.139058 CACGCTTTATCCCTACCAGCT 59.861 52.381 0.00 0.00 0.00 4.24
2586 4789 1.139058 ACGCTTTATCCCTACCAGCTG 59.861 52.381 6.78 6.78 0.00 4.24
2587 4790 1.541233 CGCTTTATCCCTACCAGCTGG 60.541 57.143 31.60 31.60 42.17 4.85
2588 4791 1.815795 GCTTTATCCCTACCAGCTGGC 60.816 57.143 33.06 10.06 39.32 4.85
2589 4792 0.843984 TTTATCCCTACCAGCTGGCC 59.156 55.000 33.06 0.00 39.32 5.36
2590 4793 1.407656 TTATCCCTACCAGCTGGCCG 61.408 60.000 33.06 22.33 39.32 6.13
2594 4797 4.181010 CTACCAGCTGGCCGGCAT 62.181 66.667 37.26 23.98 39.32 4.40
2595 4798 4.488136 TACCAGCTGGCCGGCATG 62.488 66.667 37.26 28.60 39.32 4.06
2598 4801 3.376078 CAGCTGGCCGGCATGTTT 61.376 61.111 37.26 14.84 34.17 2.83
2599 4802 3.376078 AGCTGGCCGGCATGTTTG 61.376 61.111 37.26 11.71 34.17 2.93
2600 4803 4.440127 GCTGGCCGGCATGTTTGG 62.440 66.667 32.13 10.20 0.00 3.28
2604 4807 2.800736 GCCGGCATGTTTGGCTAG 59.199 61.111 24.80 0.00 45.85 3.42
2605 4808 2.774799 GCCGGCATGTTTGGCTAGG 61.775 63.158 24.80 0.00 45.85 3.02
2606 4809 1.378514 CCGGCATGTTTGGCTAGGT 60.379 57.895 0.00 0.00 45.85 3.08
2607 4810 1.376609 CCGGCATGTTTGGCTAGGTC 61.377 60.000 0.00 0.00 45.85 3.85
2608 4811 0.676466 CGGCATGTTTGGCTAGGTCA 60.676 55.000 0.00 0.00 45.85 4.02
2609 4812 1.098050 GGCATGTTTGGCTAGGTCAG 58.902 55.000 0.00 0.00 44.68 3.51
2617 4820 2.423446 GCTAGGTCAGCCGGATGG 59.577 66.667 21.53 3.94 45.23 3.51
2618 4821 2.134287 GCTAGGTCAGCCGGATGGA 61.134 63.158 21.53 3.55 45.23 3.41
2619 4822 1.742768 CTAGGTCAGCCGGATGGAC 59.257 63.158 21.53 15.96 40.50 4.02
2620 4823 0.757188 CTAGGTCAGCCGGATGGACT 60.757 60.000 21.53 19.65 40.50 3.85
2621 4824 0.755698 TAGGTCAGCCGGATGGACTC 60.756 60.000 21.53 8.11 40.50 3.36
2622 4825 2.060980 GGTCAGCCGGATGGACTCT 61.061 63.158 21.53 0.00 37.49 3.24
2623 4826 0.755698 GGTCAGCCGGATGGACTCTA 60.756 60.000 21.53 0.00 37.49 2.43
2624 4827 1.333177 GTCAGCCGGATGGACTCTAT 58.667 55.000 21.53 0.00 37.49 1.98
2625 4828 1.689273 GTCAGCCGGATGGACTCTATT 59.311 52.381 21.53 0.00 37.49 1.73
2626 4829 2.103263 GTCAGCCGGATGGACTCTATTT 59.897 50.000 21.53 0.00 37.49 1.40
2627 4830 2.365617 TCAGCCGGATGGACTCTATTTC 59.634 50.000 21.53 0.00 37.49 2.17
2628 4831 1.341531 AGCCGGATGGACTCTATTTCG 59.658 52.381 5.05 0.00 37.49 3.46
2629 4832 1.068741 GCCGGATGGACTCTATTTCGT 59.931 52.381 5.05 0.00 37.49 3.85
2630 4833 2.862921 GCCGGATGGACTCTATTTCGTC 60.863 54.545 5.05 0.00 37.49 4.20
2635 4838 2.935481 GGACTCTATTTCGTCCGTGT 57.065 50.000 0.00 0.00 40.18 4.49
2637 4840 4.361451 GGACTCTATTTCGTCCGTGTAA 57.639 45.455 0.00 0.00 40.18 2.41
2638 4841 4.737054 GGACTCTATTTCGTCCGTGTAAA 58.263 43.478 0.00 0.00 40.18 2.01
2639 4842 4.560427 GGACTCTATTTCGTCCGTGTAAAC 59.440 45.833 0.00 0.00 40.18 2.01
2640 4843 5.125100 ACTCTATTTCGTCCGTGTAAACA 57.875 39.130 0.00 0.00 0.00 2.83
2641 4844 5.717119 ACTCTATTTCGTCCGTGTAAACAT 58.283 37.500 0.00 0.00 0.00 2.71
2642 4845 6.161381 ACTCTATTTCGTCCGTGTAAACATT 58.839 36.000 0.00 0.00 0.00 2.71
2643 4846 6.090358 ACTCTATTTCGTCCGTGTAAACATTG 59.910 38.462 0.00 0.00 0.00 2.82
2644 4847 5.927689 TCTATTTCGTCCGTGTAAACATTGT 59.072 36.000 0.00 0.00 0.00 2.71
2645 4848 4.455917 TTTCGTCCGTGTAAACATTGTC 57.544 40.909 0.00 0.00 0.00 3.18
2646 4849 3.095102 TCGTCCGTGTAAACATTGTCA 57.905 42.857 0.00 0.00 0.00 3.58
2647 4850 2.796031 TCGTCCGTGTAAACATTGTCAC 59.204 45.455 0.00 0.00 0.00 3.67
2651 4854 2.898746 CGTGTAAACATTGTCACGGTG 58.101 47.619 17.17 0.56 46.12 4.94
2652 4855 2.285756 CGTGTAAACATTGTCACGGTGT 59.714 45.455 17.17 0.00 46.12 4.16
2653 4856 3.490155 CGTGTAAACATTGTCACGGTGTA 59.510 43.478 17.17 0.00 46.12 2.90
2654 4857 4.025896 CGTGTAAACATTGTCACGGTGTAA 60.026 41.667 17.17 5.62 46.12 2.41
2655 4858 5.333492 CGTGTAAACATTGTCACGGTGTAAT 60.333 40.000 17.17 7.64 46.12 1.89
2656 4859 6.128876 CGTGTAAACATTGTCACGGTGTAATA 60.129 38.462 17.17 0.00 46.12 0.98
2657 4860 7.569043 CGTGTAAACATTGTCACGGTGTAATAA 60.569 37.037 17.17 0.00 46.12 1.40
2658 4861 8.068977 GTGTAAACATTGTCACGGTGTAATAAA 58.931 33.333 8.17 0.00 0.00 1.40
2659 4862 8.618677 TGTAAACATTGTCACGGTGTAATAAAA 58.381 29.630 8.17 0.00 0.00 1.52
2660 4863 9.109533 GTAAACATTGTCACGGTGTAATAAAAG 57.890 33.333 8.17 2.34 0.00 2.27
2661 4864 5.695818 ACATTGTCACGGTGTAATAAAAGC 58.304 37.500 8.17 0.00 0.00 3.51
2662 4865 5.472137 ACATTGTCACGGTGTAATAAAAGCT 59.528 36.000 8.17 0.00 0.00 3.74
2663 4866 6.016610 ACATTGTCACGGTGTAATAAAAGCTT 60.017 34.615 8.17 0.00 0.00 3.74
2664 4867 5.600908 TGTCACGGTGTAATAAAAGCTTC 57.399 39.130 8.17 0.00 0.00 3.86
2665 4868 4.150980 TGTCACGGTGTAATAAAAGCTTCG 59.849 41.667 8.17 0.00 0.00 3.79
2666 4869 4.386652 GTCACGGTGTAATAAAAGCTTCGA 59.613 41.667 8.17 0.00 0.00 3.71
2667 4870 4.989797 TCACGGTGTAATAAAAGCTTCGAA 59.010 37.500 8.17 0.00 0.00 3.71
2668 4871 5.119588 TCACGGTGTAATAAAAGCTTCGAAG 59.880 40.000 21.02 21.02 0.00 3.79
2669 4872 4.992951 ACGGTGTAATAAAAGCTTCGAAGT 59.007 37.500 25.24 10.34 0.00 3.01
2670 4873 5.467735 ACGGTGTAATAAAAGCTTCGAAGTT 59.532 36.000 25.24 17.83 0.00 2.66
2671 4874 6.017687 ACGGTGTAATAAAAGCTTCGAAGTTT 60.018 34.615 25.24 22.63 0.00 2.66
2672 4875 6.302313 CGGTGTAATAAAAGCTTCGAAGTTTG 59.698 38.462 25.18 7.37 29.55 2.93
2673 4876 7.136772 GGTGTAATAAAAGCTTCGAAGTTTGT 58.863 34.615 25.18 22.29 29.55 2.83
2674 4877 7.322938 GGTGTAATAAAAGCTTCGAAGTTTGTC 59.677 37.037 25.18 10.40 29.55 3.18
2675 4878 8.068380 GTGTAATAAAAGCTTCGAAGTTTGTCT 58.932 33.333 25.18 11.80 29.55 3.41
2676 4879 9.263538 TGTAATAAAAGCTTCGAAGTTTGTCTA 57.736 29.630 25.18 17.21 29.55 2.59
2698 4901 1.864565 AAAAATGCGAGTTGTTGGCC 58.135 45.000 0.00 0.00 0.00 5.36
2699 4902 1.039856 AAAATGCGAGTTGTTGGCCT 58.960 45.000 3.32 0.00 0.00 5.19
2700 4903 0.314935 AAATGCGAGTTGTTGGCCTG 59.685 50.000 3.32 0.00 0.00 4.85
2701 4904 1.526575 AATGCGAGTTGTTGGCCTGG 61.527 55.000 3.32 0.00 0.00 4.45
2702 4905 3.365265 GCGAGTTGTTGGCCTGGG 61.365 66.667 3.32 0.00 0.00 4.45
2703 4906 2.672996 CGAGTTGTTGGCCTGGGG 60.673 66.667 3.32 0.00 0.00 4.96
2704 4907 2.520968 GAGTTGTTGGCCTGGGGT 59.479 61.111 3.32 0.00 0.00 4.95
2705 4908 1.765074 GAGTTGTTGGCCTGGGGTA 59.235 57.895 3.32 0.00 0.00 3.69
2706 4909 0.322546 GAGTTGTTGGCCTGGGGTAG 60.323 60.000 3.32 0.00 0.00 3.18
2707 4910 1.065997 AGTTGTTGGCCTGGGGTAGT 61.066 55.000 3.32 0.00 0.00 2.73
2708 4911 0.178973 GTTGTTGGCCTGGGGTAGTT 60.179 55.000 3.32 0.00 0.00 2.24
2709 4912 0.178975 TTGTTGGCCTGGGGTAGTTG 60.179 55.000 3.32 0.00 0.00 3.16
2710 4913 1.063070 TGTTGGCCTGGGGTAGTTGA 61.063 55.000 3.32 0.00 0.00 3.18
2711 4914 0.608308 GTTGGCCTGGGGTAGTTGAC 60.608 60.000 3.32 0.00 0.00 3.18
2712 4915 2.119484 TTGGCCTGGGGTAGTTGACG 62.119 60.000 3.32 0.00 0.00 4.35
2713 4916 2.288025 GGCCTGGGGTAGTTGACGA 61.288 63.158 0.00 0.00 0.00 4.20
2714 4917 1.675219 GCCTGGGGTAGTTGACGAA 59.325 57.895 0.00 0.00 0.00 3.85
2715 4918 0.252197 GCCTGGGGTAGTTGACGAAT 59.748 55.000 0.00 0.00 0.00 3.34
2716 4919 2.012051 GCCTGGGGTAGTTGACGAATG 61.012 57.143 0.00 0.00 0.00 2.67
2717 4920 1.553248 CCTGGGGTAGTTGACGAATGA 59.447 52.381 0.00 0.00 0.00 2.57
2718 4921 2.170607 CCTGGGGTAGTTGACGAATGAT 59.829 50.000 0.00 0.00 0.00 2.45
2719 4922 3.370527 CCTGGGGTAGTTGACGAATGATT 60.371 47.826 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.991776 TGGGGATTCAACTGTGTTGATAA 58.008 39.130 12.95 1.40 0.00 1.75
41 42 3.524095 TGATGGGGATTCAACTGTGTT 57.476 42.857 0.00 0.00 0.00 3.32
47 48 3.017048 TGTCCATGATGGGGATTCAAC 57.983 47.619 12.26 0.80 38.32 3.18
62 63 5.690865 ACATTCCAGAAACTTAGTTGTCCA 58.309 37.500 0.00 0.00 0.00 4.02
122 123 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
123 124 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
124 125 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
125 126 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
126 127 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
127 128 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
128 129 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
129 130 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
130 131 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
131 132 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
132 133 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
133 134 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
134 135 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
135 136 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
136 137 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
137 138 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
138 139 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
139 140 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
140 141 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
141 142 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
142 143 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
143 144 4.985044 ATTGAACTAAAACCACGACGAG 57.015 40.909 0.00 0.00 0.00 4.18
144 145 5.293814 TCAAATTGAACTAAAACCACGACGA 59.706 36.000 0.00 0.00 0.00 4.20
145 146 5.503498 TCAAATTGAACTAAAACCACGACG 58.497 37.500 0.00 0.00 0.00 5.12
159 160 5.966503 CGTCGTGGTTTTAGTTCAAATTGAA 59.033 36.000 4.03 4.03 33.32 2.69
160 161 5.293814 TCGTCGTGGTTTTAGTTCAAATTGA 59.706 36.000 0.00 0.00 0.00 2.57
161 162 5.503498 TCGTCGTGGTTTTAGTTCAAATTG 58.497 37.500 0.00 0.00 0.00 2.32
162 163 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
163 164 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
164 165 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
165 166 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
166 167 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
167 168 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
168 169 6.479660 TCAAATTACTCGTCGTGGTTTTAGTT 59.520 34.615 0.00 0.00 0.00 2.24
169 170 5.984926 TCAAATTACTCGTCGTGGTTTTAGT 59.015 36.000 0.00 0.00 0.00 2.24
170 171 6.456447 TCAAATTACTCGTCGTGGTTTTAG 57.544 37.500 0.00 0.00 0.00 1.85
171 172 6.841443 TTCAAATTACTCGTCGTGGTTTTA 57.159 33.333 0.00 0.00 0.00 1.52
172 173 5.738118 TTCAAATTACTCGTCGTGGTTTT 57.262 34.783 0.00 0.00 0.00 2.43
173 174 5.504392 GTTTCAAATTACTCGTCGTGGTTT 58.496 37.500 0.00 0.00 0.00 3.27
174 175 4.318263 CGTTTCAAATTACTCGTCGTGGTT 60.318 41.667 0.00 0.00 0.00 3.67
175 176 3.182972 CGTTTCAAATTACTCGTCGTGGT 59.817 43.478 0.00 0.00 0.00 4.16
176 177 3.422603 CCGTTTCAAATTACTCGTCGTGG 60.423 47.826 0.00 0.00 0.00 4.94
177 178 3.426191 TCCGTTTCAAATTACTCGTCGTG 59.574 43.478 0.00 0.00 0.00 4.35
178 179 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
179 180 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
180 181 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
181 182 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
182 183 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
183 184 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
184 185 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
185 186 9.201127 GTATATACTCCCTCCGTTTCAAATTAC 57.799 37.037 5.58 0.00 0.00 1.89
186 187 9.151177 AGTATATACTCCCTCCGTTTCAAATTA 57.849 33.333 9.71 0.00 0.00 1.40
187 188 8.030913 AGTATATACTCCCTCCGTTTCAAATT 57.969 34.615 9.71 0.00 0.00 1.82
188 189 7.613551 AGTATATACTCCCTCCGTTTCAAAT 57.386 36.000 9.71 0.00 0.00 2.32
189 190 7.270047 CAAGTATATACTCCCTCCGTTTCAAA 58.730 38.462 15.72 0.00 34.99 2.69
190 191 6.183360 CCAAGTATATACTCCCTCCGTTTCAA 60.183 42.308 15.72 0.00 34.99 2.69
191 192 5.303589 CCAAGTATATACTCCCTCCGTTTCA 59.696 44.000 15.72 0.00 34.99 2.69
192 193 5.780984 CCAAGTATATACTCCCTCCGTTTC 58.219 45.833 15.72 0.00 34.99 2.78
193 194 4.040095 GCCAAGTATATACTCCCTCCGTTT 59.960 45.833 15.72 0.00 34.99 3.60
194 195 3.577415 GCCAAGTATATACTCCCTCCGTT 59.423 47.826 15.72 0.00 34.99 4.44
195 196 3.163467 GCCAAGTATATACTCCCTCCGT 58.837 50.000 15.72 0.00 34.99 4.69
196 197 3.432378 AGCCAAGTATATACTCCCTCCG 58.568 50.000 15.72 2.10 34.99 4.63
197 198 4.417437 TGAGCCAAGTATATACTCCCTCC 58.583 47.826 15.72 6.70 34.99 4.30
198 199 6.613153 ATTGAGCCAAGTATATACTCCCTC 57.387 41.667 15.72 18.45 34.99 4.30
199 200 6.155393 GCTATTGAGCCAAGTATATACTCCCT 59.845 42.308 15.72 11.63 43.49 4.20
200 201 6.342111 GCTATTGAGCCAAGTATATACTCCC 58.658 44.000 15.72 7.41 43.49 4.30
393 400 4.949856 ACAAATCTGAACAAGTCACCTGTT 59.050 37.500 0.00 0.00 31.13 3.16
414 421 0.398522 AGGTGGTCTGGACAGTGACA 60.399 55.000 0.00 0.00 35.11 3.58
440 447 7.476540 TTTCACAAGAGTAACATAGAGGCTA 57.523 36.000 0.00 0.00 0.00 3.93
469 531 6.683708 GTCAAAACGTTCACGAGTCAAATTTA 59.316 34.615 6.30 0.00 43.02 1.40
482 544 3.872771 GGTTAGGTGAGTCAAAACGTTCA 59.127 43.478 0.00 0.00 0.00 3.18
485 547 2.486013 GGGGTTAGGTGAGTCAAAACGT 60.486 50.000 0.00 0.00 0.00 3.99
564 635 1.541588 CTTTAAGGGGTCTGCTGTTGC 59.458 52.381 0.00 0.00 40.20 4.17
570 641 1.004862 AGAAGGCTTTAAGGGGTCTGC 59.995 52.381 0.00 0.00 0.00 4.26
572 643 1.916874 GGAGAAGGCTTTAAGGGGTCT 59.083 52.381 0.00 0.00 0.00 3.85
645 719 1.064832 AGGAGGGAAGCAATGAGAAGC 60.065 52.381 0.00 0.00 0.00 3.86
646 720 2.238144 TGAGGAGGGAAGCAATGAGAAG 59.762 50.000 0.00 0.00 0.00 2.85
660 734 7.870445 GCATTAGAGATAACTTACTTGAGGAGG 59.130 40.741 0.00 0.00 0.00 4.30
690 764 3.025262 AGGAAAGAAGCCCTAGACGTAG 58.975 50.000 0.00 0.00 0.00 3.51
691 765 3.097342 AGGAAAGAAGCCCTAGACGTA 57.903 47.619 0.00 0.00 0.00 3.57
692 766 1.939980 AGGAAAGAAGCCCTAGACGT 58.060 50.000 0.00 0.00 0.00 4.34
693 767 2.028020 ACAAGGAAAGAAGCCCTAGACG 60.028 50.000 0.00 0.00 31.36 4.18
694 768 3.262151 AGACAAGGAAAGAAGCCCTAGAC 59.738 47.826 0.00 0.00 31.36 2.59
776 850 3.817084 TCATATAATGTTGGAGCTGCAGC 59.183 43.478 31.53 31.53 42.49 5.25
777 851 6.381481 TTTCATATAATGTTGGAGCTGCAG 57.619 37.500 10.11 10.11 0.00 4.41
880 954 3.198417 ACATGTGCTGGTATCACAGATGA 59.802 43.478 16.86 0.00 46.14 2.92
952 1030 2.223525 GGAGAGACTACATGTACGTGGC 60.224 54.545 19.05 5.84 0.00 5.01
953 1031 3.280295 AGGAGAGACTACATGTACGTGG 58.720 50.000 19.05 5.03 0.00 4.94
969 1047 1.464734 AGAGATTTGCGTCGAGGAGA 58.535 50.000 9.75 0.00 0.00 3.71
975 1053 3.030209 TCGGAAGAGATTTGCGTCG 57.970 52.632 1.05 0.00 34.81 5.12
1026 1104 1.066114 GTCTTGAGACGACGAAGCCG 61.066 60.000 0.00 0.00 37.26 5.52
1251 1335 2.126071 CTGCCGTCGTAGGTGTGG 60.126 66.667 0.00 0.00 0.00 4.17
1342 1426 3.745803 GAAGCGGACGACCTCGGT 61.746 66.667 1.72 0.00 44.95 4.69
1760 1851 0.797249 CGTAGAAGCCTTCGTGGACG 60.797 60.000 0.00 4.60 38.35 4.79
1783 1875 6.769512 AGCTGGTGAAGTACAATAAGAAAGA 58.230 36.000 0.00 0.00 0.00 2.52
1784 1876 7.201565 GCTAGCTGGTGAAGTACAATAAGAAAG 60.202 40.741 7.70 0.00 0.00 2.62
1785 1877 6.594159 GCTAGCTGGTGAAGTACAATAAGAAA 59.406 38.462 7.70 0.00 0.00 2.52
1786 1878 6.070767 AGCTAGCTGGTGAAGTACAATAAGAA 60.071 38.462 18.57 0.00 0.00 2.52
1828 1927 5.452077 CGGACCTTAGTTTCTTCCCTAGATG 60.452 48.000 0.00 0.00 31.54 2.90
1836 1935 3.596310 AGCTCGGACCTTAGTTTCTTC 57.404 47.619 0.00 0.00 0.00 2.87
1848 1947 0.444260 GCAACAAGCTAAGCTCGGAC 59.556 55.000 0.00 0.00 38.25 4.79
1891 1991 7.975058 ATATCTCGATATGTTTCTCAGCATGAG 59.025 37.037 0.00 0.18 46.66 2.90
1938 2044 4.394729 ACCACTTCCACGATTTTACACAT 58.605 39.130 0.00 0.00 0.00 3.21
1940 2046 3.810941 TGACCACTTCCACGATTTTACAC 59.189 43.478 0.00 0.00 0.00 2.90
1941 2047 4.074627 TGACCACTTCCACGATTTTACA 57.925 40.909 0.00 0.00 0.00 2.41
1942 2048 4.935808 AGATGACCACTTCCACGATTTTAC 59.064 41.667 0.00 0.00 0.00 2.01
1943 2049 5.160607 AGATGACCACTTCCACGATTTTA 57.839 39.130 0.00 0.00 0.00 1.52
1944 2050 4.021102 AGATGACCACTTCCACGATTTT 57.979 40.909 0.00 0.00 0.00 1.82
1945 2051 3.703001 AGATGACCACTTCCACGATTT 57.297 42.857 0.00 0.00 0.00 2.17
1946 2052 3.007940 TGAAGATGACCACTTCCACGATT 59.992 43.478 0.00 0.00 41.83 3.34
1947 2053 2.567169 TGAAGATGACCACTTCCACGAT 59.433 45.455 0.00 0.00 41.83 3.73
1948 2054 1.967779 TGAAGATGACCACTTCCACGA 59.032 47.619 0.00 0.00 41.83 4.35
1949 2055 2.455674 TGAAGATGACCACTTCCACG 57.544 50.000 0.00 0.00 41.83 4.94
1965 2071 6.014755 TCTGCCATTTGTTATTTGGACATGAA 60.015 34.615 0.00 0.00 31.94 2.57
1993 2099 5.475909 AGATGAGCTGACAATTCACAACAAT 59.524 36.000 0.00 0.00 0.00 2.71
2011 2117 1.328680 CGGCATCGTTCCAAAGATGAG 59.671 52.381 16.51 7.67 44.30 2.90
2022 2128 1.148310 CTGAAAGACACGGCATCGTT 58.852 50.000 0.00 0.00 41.87 3.85
2030 2136 2.372690 CGACCCGCTGAAAGACACG 61.373 63.158 0.00 0.00 34.07 4.49
2031 2137 3.550656 CGACCCGCTGAAAGACAC 58.449 61.111 0.00 0.00 34.07 3.67
2050 2156 0.745845 AAGACATGCCGACAGATGCC 60.746 55.000 0.00 0.00 0.00 4.40
2061 2167 3.442100 GGCTGCATAAAAGAAGACATGC 58.558 45.455 0.50 0.00 43.22 4.06
2063 2169 2.684881 CCGGCTGCATAAAAGAAGACAT 59.315 45.455 0.50 0.00 0.00 3.06
2080 2189 2.193536 AAACTTGTGACAGGCCGGC 61.194 57.895 21.18 21.18 0.00 6.13
2096 2205 5.048364 ACAAATTTCGGTAGCATAGCACAAA 60.048 36.000 0.00 0.00 39.50 2.83
2110 2219 5.181690 TGAAAGTCCTGAACAAATTTCGG 57.818 39.130 0.00 0.00 31.02 4.30
2111 2220 5.215160 CCTGAAAGTCCTGAACAAATTTCG 58.785 41.667 0.00 0.00 31.02 3.46
2131 2954 1.066002 CACTGTTTTCTGGTGCACCTG 59.934 52.381 34.75 32.84 36.82 4.00
2237 3344 2.611292 GAGAGATTTCATGGAGTTGCCG 59.389 50.000 0.00 0.00 40.66 5.69
2260 3367 0.744057 ATCGCGCCATTGTCATGACA 60.744 50.000 24.56 24.56 39.98 3.58
2261 3368 0.316442 CATCGCGCCATTGTCATGAC 60.316 55.000 19.27 19.27 31.07 3.06
2262 3369 2.016171 CATCGCGCCATTGTCATGA 58.984 52.632 0.00 0.00 31.07 3.07
2263 3370 1.656263 GCATCGCGCCATTGTCATG 60.656 57.895 0.00 0.00 32.94 3.07
2264 3371 1.378882 AAGCATCGCGCCATTGTCAT 61.379 50.000 0.00 0.00 44.04 3.06
2265 3372 2.039974 AAGCATCGCGCCATTGTCA 61.040 52.632 0.00 0.00 44.04 3.58
2266 3373 1.584483 CAAGCATCGCGCCATTGTC 60.584 57.895 0.00 0.00 44.04 3.18
2273 3380 1.398960 GGATTATCACAAGCATCGCGC 60.399 52.381 0.00 0.00 42.91 6.86
2278 4187 6.737720 TCTCTACTGGATTATCACAAGCAT 57.262 37.500 0.00 0.00 0.00 3.79
2283 4192 5.450550 CGCTGTTCTCTACTGGATTATCACA 60.451 44.000 0.00 0.00 0.00 3.58
2291 4200 1.905637 TCACGCTGTTCTCTACTGGA 58.094 50.000 0.00 0.00 0.00 3.86
2357 4560 2.350738 GCTAGCACTGGCCCAAAAA 58.649 52.632 10.63 0.00 42.56 1.94
2385 4588 2.937799 GGCCCAAATACATTGCATTGTG 59.062 45.455 21.45 8.36 37.73 3.33
2389 4592 4.200874 CAAATGGCCCAAATACATTGCAT 58.799 39.130 0.00 0.00 37.73 3.96
2390 4593 3.607741 CAAATGGCCCAAATACATTGCA 58.392 40.909 0.00 0.00 37.73 4.08
2442 4645 1.363807 CATAGACTCGCATGCCGGA 59.636 57.895 13.15 3.36 37.59 5.14
2456 4659 8.759641 GCTATTTCATGTATAATCGCTCCATAG 58.240 37.037 0.00 0.00 0.00 2.23
2457 4660 8.257306 TGCTATTTCATGTATAATCGCTCCATA 58.743 33.333 12.08 0.00 0.00 2.74
2458 4661 7.105588 TGCTATTTCATGTATAATCGCTCCAT 58.894 34.615 12.08 0.00 0.00 3.41
2459 4662 6.463360 TGCTATTTCATGTATAATCGCTCCA 58.537 36.000 12.08 0.00 0.00 3.86
2460 4663 6.813649 TCTGCTATTTCATGTATAATCGCTCC 59.186 38.462 12.08 0.00 0.00 4.70
2461 4664 7.818493 TCTGCTATTTCATGTATAATCGCTC 57.182 36.000 12.08 0.00 0.00 5.03
2462 4665 7.657354 TGTTCTGCTATTTCATGTATAATCGCT 59.343 33.333 12.08 0.00 0.00 4.93
2463 4666 7.796838 TGTTCTGCTATTTCATGTATAATCGC 58.203 34.615 0.00 0.82 0.00 4.58
2468 4671 9.929180 GACCTATGTTCTGCTATTTCATGTATA 57.071 33.333 0.00 0.00 0.00 1.47
2469 4672 8.432013 TGACCTATGTTCTGCTATTTCATGTAT 58.568 33.333 0.00 0.00 0.00 2.29
2470 4673 7.791029 TGACCTATGTTCTGCTATTTCATGTA 58.209 34.615 0.00 0.00 0.00 2.29
2471 4674 6.653020 TGACCTATGTTCTGCTATTTCATGT 58.347 36.000 0.00 0.00 0.00 3.21
2472 4675 7.558161 TTGACCTATGTTCTGCTATTTCATG 57.442 36.000 0.00 0.00 0.00 3.07
2473 4676 8.757982 ATTTGACCTATGTTCTGCTATTTCAT 57.242 30.769 0.00 0.00 0.00 2.57
2474 4677 8.579850 AATTTGACCTATGTTCTGCTATTTCA 57.420 30.769 0.00 0.00 0.00 2.69
2475 4678 9.860898 AAAATTTGACCTATGTTCTGCTATTTC 57.139 29.630 0.00 0.00 0.00 2.17
2476 4679 9.860898 GAAAATTTGACCTATGTTCTGCTATTT 57.139 29.630 0.00 0.00 0.00 1.40
2477 4680 9.023962 TGAAAATTTGACCTATGTTCTGCTATT 57.976 29.630 0.00 0.00 0.00 1.73
2478 4681 8.579850 TGAAAATTTGACCTATGTTCTGCTAT 57.420 30.769 0.00 0.00 0.00 2.97
2479 4682 7.994425 TGAAAATTTGACCTATGTTCTGCTA 57.006 32.000 0.00 0.00 0.00 3.49
2480 4683 6.899393 TGAAAATTTGACCTATGTTCTGCT 57.101 33.333 0.00 0.00 0.00 4.24
2481 4684 8.462016 AGTATGAAAATTTGACCTATGTTCTGC 58.538 33.333 0.00 0.00 0.00 4.26
2505 4708 9.396022 CCTAAACTCATGACCAATATTACAAGT 57.604 33.333 0.00 0.00 0.00 3.16
2506 4709 9.613428 TCCTAAACTCATGACCAATATTACAAG 57.387 33.333 0.00 0.00 0.00 3.16
2507 4710 9.613428 CTCCTAAACTCATGACCAATATTACAA 57.387 33.333 0.00 0.00 0.00 2.41
2508 4711 7.715249 GCTCCTAAACTCATGACCAATATTACA 59.285 37.037 0.00 0.00 0.00 2.41
2509 4712 7.934120 AGCTCCTAAACTCATGACCAATATTAC 59.066 37.037 0.00 0.00 0.00 1.89
2510 4713 8.034313 AGCTCCTAAACTCATGACCAATATTA 57.966 34.615 0.00 0.00 0.00 0.98
2511 4714 6.904626 AGCTCCTAAACTCATGACCAATATT 58.095 36.000 0.00 0.00 0.00 1.28
2512 4715 6.506538 AGCTCCTAAACTCATGACCAATAT 57.493 37.500 0.00 0.00 0.00 1.28
2513 4716 5.957771 AGCTCCTAAACTCATGACCAATA 57.042 39.130 0.00 0.00 0.00 1.90
2514 4717 4.851639 AGCTCCTAAACTCATGACCAAT 57.148 40.909 0.00 0.00 0.00 3.16
2515 4718 4.041567 TCAAGCTCCTAAACTCATGACCAA 59.958 41.667 0.00 0.00 0.00 3.67
2516 4719 3.582647 TCAAGCTCCTAAACTCATGACCA 59.417 43.478 0.00 0.00 0.00 4.02
2517 4720 4.207891 TCAAGCTCCTAAACTCATGACC 57.792 45.455 0.00 0.00 0.00 4.02
2518 4721 5.645497 ACATTCAAGCTCCTAAACTCATGAC 59.355 40.000 0.00 0.00 0.00 3.06
2519 4722 5.809001 ACATTCAAGCTCCTAAACTCATGA 58.191 37.500 0.00 0.00 0.00 3.07
2520 4723 5.220548 CGACATTCAAGCTCCTAAACTCATG 60.221 44.000 0.00 0.00 0.00 3.07
2521 4724 4.872691 CGACATTCAAGCTCCTAAACTCAT 59.127 41.667 0.00 0.00 0.00 2.90
2522 4725 4.021456 TCGACATTCAAGCTCCTAAACTCA 60.021 41.667 0.00 0.00 0.00 3.41
2523 4726 4.495422 TCGACATTCAAGCTCCTAAACTC 58.505 43.478 0.00 0.00 0.00 3.01
2524 4727 4.499183 CTCGACATTCAAGCTCCTAAACT 58.501 43.478 0.00 0.00 0.00 2.66
2525 4728 3.619038 CCTCGACATTCAAGCTCCTAAAC 59.381 47.826 0.00 0.00 0.00 2.01
2526 4729 3.861840 CCTCGACATTCAAGCTCCTAAA 58.138 45.455 0.00 0.00 0.00 1.85
2527 4730 2.418746 GCCTCGACATTCAAGCTCCTAA 60.419 50.000 0.00 0.00 0.00 2.69
2528 4731 1.137086 GCCTCGACATTCAAGCTCCTA 59.863 52.381 0.00 0.00 0.00 2.94
2529 4732 0.107945 GCCTCGACATTCAAGCTCCT 60.108 55.000 0.00 0.00 0.00 3.69
2530 4733 0.107945 AGCCTCGACATTCAAGCTCC 60.108 55.000 0.00 0.00 0.00 4.70
2531 4734 1.731720 AAGCCTCGACATTCAAGCTC 58.268 50.000 0.00 0.00 0.00 4.09
2532 4735 2.028112 TGTAAGCCTCGACATTCAAGCT 60.028 45.455 0.00 0.00 0.00 3.74
2533 4736 2.346803 TGTAAGCCTCGACATTCAAGC 58.653 47.619 0.00 0.00 0.00 4.01
2534 4737 3.181516 GCTTGTAAGCCTCGACATTCAAG 60.182 47.826 5.30 0.00 46.20 3.02
2535 4738 2.742053 GCTTGTAAGCCTCGACATTCAA 59.258 45.455 5.30 0.00 46.20 2.69
2536 4739 2.346803 GCTTGTAAGCCTCGACATTCA 58.653 47.619 5.30 0.00 46.20 2.57
2560 4763 1.859080 GTAGGGATAAAGCGTGCTTCG 59.141 52.381 7.67 0.00 43.12 3.79
2561 4764 2.210961 GGTAGGGATAAAGCGTGCTTC 58.789 52.381 7.67 0.00 34.84 3.86
2562 4765 1.557832 TGGTAGGGATAAAGCGTGCTT 59.442 47.619 0.24 0.24 37.98 3.91
2563 4766 1.139058 CTGGTAGGGATAAAGCGTGCT 59.861 52.381 0.00 0.00 0.00 4.40
2564 4767 1.583054 CTGGTAGGGATAAAGCGTGC 58.417 55.000 0.00 0.00 0.00 5.34
2565 4768 1.139058 AGCTGGTAGGGATAAAGCGTG 59.861 52.381 0.00 0.00 38.90 5.34
2566 4769 1.139058 CAGCTGGTAGGGATAAAGCGT 59.861 52.381 5.57 0.00 38.90 5.07
2567 4770 1.541233 CCAGCTGGTAGGGATAAAGCG 60.541 57.143 25.53 0.00 38.90 4.68
2568 4771 1.815795 GCCAGCTGGTAGGGATAAAGC 60.816 57.143 32.81 10.86 37.57 3.51
2569 4772 1.202818 GGCCAGCTGGTAGGGATAAAG 60.203 57.143 32.81 4.20 37.57 1.85
2570 4773 0.843984 GGCCAGCTGGTAGGGATAAA 59.156 55.000 32.81 0.00 37.57 1.40
2571 4774 1.407656 CGGCCAGCTGGTAGGGATAA 61.408 60.000 32.81 0.00 37.57 1.75
2572 4775 1.837051 CGGCCAGCTGGTAGGGATA 60.837 63.158 32.81 0.00 37.57 2.59
2573 4776 3.164269 CGGCCAGCTGGTAGGGAT 61.164 66.667 32.81 0.00 37.57 3.85
2577 4780 4.181010 ATGCCGGCCAGCTGGTAG 62.181 66.667 32.81 25.05 44.16 3.18
2578 4781 4.488136 CATGCCGGCCAGCTGGTA 62.488 66.667 32.81 14.89 44.16 3.25
2581 4784 3.376078 AAACATGCCGGCCAGCTG 61.376 61.111 26.77 18.07 0.00 4.24
2582 4785 3.376078 CAAACATGCCGGCCAGCT 61.376 61.111 26.77 4.36 0.00 4.24
2583 4786 4.440127 CCAAACATGCCGGCCAGC 62.440 66.667 26.77 3.21 0.00 4.85
2584 4787 4.440127 GCCAAACATGCCGGCCAG 62.440 66.667 26.77 19.13 40.07 4.85
2587 4790 2.774799 CCTAGCCAAACATGCCGGC 61.775 63.158 22.73 22.73 46.62 6.13
2588 4791 1.376609 GACCTAGCCAAACATGCCGG 61.377 60.000 0.00 0.00 0.00 6.13
2589 4792 0.676466 TGACCTAGCCAAACATGCCG 60.676 55.000 0.00 0.00 0.00 5.69
2590 4793 1.098050 CTGACCTAGCCAAACATGCC 58.902 55.000 0.00 0.00 0.00 4.40
2601 4804 0.757188 AGTCCATCCGGCTGACCTAG 60.757 60.000 6.92 0.00 0.00 3.02
2602 4805 0.755698 GAGTCCATCCGGCTGACCTA 60.756 60.000 6.92 0.00 0.00 3.08
2603 4806 2.039624 AGTCCATCCGGCTGACCT 59.960 61.111 6.92 0.00 0.00 3.85
2604 4807 0.755698 TAGAGTCCATCCGGCTGACC 60.756 60.000 6.92 0.00 0.00 4.02
2605 4808 1.333177 ATAGAGTCCATCCGGCTGAC 58.667 55.000 6.92 8.24 0.00 3.51
2606 4809 2.088104 AATAGAGTCCATCCGGCTGA 57.912 50.000 6.92 0.00 0.00 4.26
2607 4810 2.760374 GAAATAGAGTCCATCCGGCTG 58.240 52.381 0.00 0.00 0.00 4.85
2608 4811 1.341531 CGAAATAGAGTCCATCCGGCT 59.658 52.381 0.00 0.00 0.00 5.52
2609 4812 1.068741 ACGAAATAGAGTCCATCCGGC 59.931 52.381 0.00 0.00 0.00 6.13
2610 4813 3.014604 GACGAAATAGAGTCCATCCGG 57.985 52.381 0.00 0.00 0.00 5.14
2617 4820 5.156355 TGTTTACACGGACGAAATAGAGTC 58.844 41.667 0.00 0.00 36.70 3.36
2618 4821 5.125100 TGTTTACACGGACGAAATAGAGT 57.875 39.130 0.00 0.00 0.00 3.24
2619 4822 6.090358 ACAATGTTTACACGGACGAAATAGAG 59.910 38.462 0.00 0.00 0.00 2.43
2620 4823 5.927689 ACAATGTTTACACGGACGAAATAGA 59.072 36.000 0.00 0.00 0.00 1.98
2621 4824 6.128769 TGACAATGTTTACACGGACGAAATAG 60.129 38.462 0.00 0.00 0.00 1.73
2622 4825 5.695363 TGACAATGTTTACACGGACGAAATA 59.305 36.000 0.00 0.00 0.00 1.40
2623 4826 4.512198 TGACAATGTTTACACGGACGAAAT 59.488 37.500 0.00 0.00 0.00 2.17
2624 4827 3.869832 TGACAATGTTTACACGGACGAAA 59.130 39.130 0.00 0.00 0.00 3.46
2625 4828 3.245754 GTGACAATGTTTACACGGACGAA 59.754 43.478 0.00 0.00 0.00 3.85
2626 4829 2.796031 GTGACAATGTTTACACGGACGA 59.204 45.455 0.00 0.00 0.00 4.20
2627 4830 3.163642 GTGACAATGTTTACACGGACG 57.836 47.619 0.00 0.00 0.00 4.79
2632 4835 3.955771 ACACCGTGACAATGTTTACAC 57.044 42.857 5.28 0.00 0.00 2.90
2633 4836 7.725818 TTATTACACCGTGACAATGTTTACA 57.274 32.000 5.28 0.00 0.00 2.41
2634 4837 9.109533 CTTTTATTACACCGTGACAATGTTTAC 57.890 33.333 5.28 0.00 0.00 2.01
2635 4838 7.804129 GCTTTTATTACACCGTGACAATGTTTA 59.196 33.333 5.28 0.00 0.00 2.01
2636 4839 6.639279 GCTTTTATTACACCGTGACAATGTTT 59.361 34.615 5.28 0.00 0.00 2.83
2637 4840 6.016610 AGCTTTTATTACACCGTGACAATGTT 60.017 34.615 5.28 0.00 0.00 2.71
2638 4841 5.472137 AGCTTTTATTACACCGTGACAATGT 59.528 36.000 5.28 0.00 0.00 2.71
2639 4842 5.938322 AGCTTTTATTACACCGTGACAATG 58.062 37.500 5.28 0.00 0.00 2.82
2640 4843 6.569179 AAGCTTTTATTACACCGTGACAAT 57.431 33.333 5.28 6.90 0.00 2.71
2641 4844 5.333492 CGAAGCTTTTATTACACCGTGACAA 60.333 40.000 5.28 0.00 0.00 3.18
2642 4845 4.150980 CGAAGCTTTTATTACACCGTGACA 59.849 41.667 5.28 0.00 0.00 3.58
2643 4846 4.386652 TCGAAGCTTTTATTACACCGTGAC 59.613 41.667 5.28 0.00 0.00 3.67
2644 4847 4.558178 TCGAAGCTTTTATTACACCGTGA 58.442 39.130 5.28 0.00 0.00 4.35
2645 4848 4.914312 TCGAAGCTTTTATTACACCGTG 57.086 40.909 0.00 0.00 0.00 4.94
2646 4849 4.992951 ACTTCGAAGCTTTTATTACACCGT 59.007 37.500 24.86 0.00 0.00 4.83
2647 4850 5.526010 ACTTCGAAGCTTTTATTACACCG 57.474 39.130 24.86 0.00 0.00 4.94
2648 4851 7.136772 ACAAACTTCGAAGCTTTTATTACACC 58.863 34.615 24.86 0.00 0.00 4.16
2649 4852 8.068380 AGACAAACTTCGAAGCTTTTATTACAC 58.932 33.333 24.86 0.00 0.00 2.90
2650 4853 8.149973 AGACAAACTTCGAAGCTTTTATTACA 57.850 30.769 24.86 0.00 0.00 2.41
2679 4882 1.412343 AGGCCAACAACTCGCATTTTT 59.588 42.857 5.01 0.00 0.00 1.94
2680 4883 1.039856 AGGCCAACAACTCGCATTTT 58.960 45.000 5.01 0.00 0.00 1.82
2681 4884 0.314935 CAGGCCAACAACTCGCATTT 59.685 50.000 5.01 0.00 0.00 2.32
2682 4885 1.526575 CCAGGCCAACAACTCGCATT 61.527 55.000 5.01 0.00 0.00 3.56
2683 4886 1.973281 CCAGGCCAACAACTCGCAT 60.973 57.895 5.01 0.00 0.00 4.73
2684 4887 2.594303 CCAGGCCAACAACTCGCA 60.594 61.111 5.01 0.00 0.00 5.10
2685 4888 3.365265 CCCAGGCCAACAACTCGC 61.365 66.667 5.01 0.00 0.00 5.03
2686 4889 2.119484 TACCCCAGGCCAACAACTCG 62.119 60.000 5.01 0.00 0.00 4.18
2687 4890 0.322546 CTACCCCAGGCCAACAACTC 60.323 60.000 5.01 0.00 0.00 3.01
2688 4891 1.065997 ACTACCCCAGGCCAACAACT 61.066 55.000 5.01 0.00 0.00 3.16
2689 4892 0.178973 AACTACCCCAGGCCAACAAC 60.179 55.000 5.01 0.00 0.00 3.32
2690 4893 0.178975 CAACTACCCCAGGCCAACAA 60.179 55.000 5.01 0.00 0.00 2.83
2691 4894 1.063070 TCAACTACCCCAGGCCAACA 61.063 55.000 5.01 0.00 0.00 3.33
2692 4895 0.608308 GTCAACTACCCCAGGCCAAC 60.608 60.000 5.01 0.00 0.00 3.77
2693 4896 1.765074 GTCAACTACCCCAGGCCAA 59.235 57.895 5.01 0.00 0.00 4.52
2694 4897 2.589157 CGTCAACTACCCCAGGCCA 61.589 63.158 5.01 0.00 0.00 5.36
2695 4898 1.833787 TTCGTCAACTACCCCAGGCC 61.834 60.000 0.00 0.00 0.00 5.19
2696 4899 0.252197 ATTCGTCAACTACCCCAGGC 59.748 55.000 0.00 0.00 0.00 4.85
2697 4900 1.553248 TCATTCGTCAACTACCCCAGG 59.447 52.381 0.00 0.00 0.00 4.45
2698 4901 3.543680 ATCATTCGTCAACTACCCCAG 57.456 47.619 0.00 0.00 0.00 4.45
2699 4902 3.992943 AATCATTCGTCAACTACCCCA 57.007 42.857 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.