Multiple sequence alignment - TraesCS3A01G389500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G389500 chr3A 100.000 3727 0 0 1 3727 638064056 638067782 0.000000e+00 6883
1 TraesCS3A01G389500 chr3A 82.459 724 73 21 1626 2316 506244374 506243672 5.360000e-163 584
2 TraesCS3A01G389500 chr3A 78.830 855 132 25 1488 2316 478044979 478044148 7.090000e-147 531
3 TraesCS3A01G389500 chr3A 92.632 95 3 3 3624 3716 57262237 57262145 2.340000e-27 134
4 TraesCS3A01G389500 chr3D 89.053 1900 115 35 1 1861 496743409 496741564 0.000000e+00 2270
5 TraesCS3A01G389500 chr3D 88.926 1210 84 23 2103 3308 496741369 496740206 0.000000e+00 1447
6 TraesCS3A01G389500 chr3D 87.859 313 35 3 366 677 544444256 544443946 7.610000e-97 364
7 TraesCS3A01G389500 chr3D 89.041 292 29 3 366 655 536441804 536441514 3.540000e-95 359
8 TraesCS3A01G389500 chr3D 88.699 292 30 3 366 655 536590536 536590246 1.650000e-93 353
9 TraesCS3A01G389500 chr3D 85.276 163 13 3 3441 3592 496739885 496739723 1.390000e-34 158
10 TraesCS3A01G389500 chr3D 93.407 91 2 2 3625 3713 596060112 596060200 8.400000e-27 132
11 TraesCS3A01G389500 chr3B 87.538 1661 118 35 1672 3288 655855919 655854304 0.000000e+00 1838
12 TraesCS3A01G389500 chr3B 87.638 1448 104 31 229 1644 655857321 655855917 0.000000e+00 1613
13 TraesCS3A01G389500 chr3B 79.322 856 128 24 1488 2317 464323473 464322641 4.210000e-154 555
14 TraesCS3A01G389500 chr3B 80.709 705 99 22 1628 2317 464145250 464144568 7.140000e-142 514
15 TraesCS3A01G389500 chr3B 88.333 300 34 1 366 664 720265210 720264911 3.540000e-95 359
16 TraesCS3A01G389500 chr3B 87.736 106 8 2 3492 3592 655854134 655854029 6.540000e-23 119
17 TraesCS3A01G389500 chr7B 82.735 724 71 21 1626 2316 426965958 426965256 2.480000e-166 595
18 TraesCS3A01G389500 chr7B 82.459 724 73 21 1626 2316 364243721 364243019 5.360000e-163 584
19 TraesCS3A01G389500 chr7B 93.023 86 5 1 2568 2652 713206397 713206482 1.410000e-24 124
20 TraesCS3A01G389500 chr1B 82.669 727 72 22 1623 2316 12934622 12935327 2.480000e-166 595
21 TraesCS3A01G389500 chr1B 94.828 116 5 1 3389 3503 436689036 436689151 2.960000e-41 180
22 TraesCS3A01G389500 chr1B 91.200 125 9 2 3392 3515 40182241 40182364 6.400000e-38 169
23 TraesCS3A01G389500 chr4A 82.256 727 75 21 1623 2316 709963753 709964458 2.500000e-161 579
24 TraesCS3A01G389500 chr4A 94.444 90 4 1 3622 3710 149042855 149042766 1.810000e-28 137
25 TraesCS3A01G389500 chr1D 79.766 855 125 28 1488 2317 455514768 455515599 8.980000e-161 577
26 TraesCS3A01G389500 chr1D 93.966 116 6 1 3389 3503 324412274 324412389 1.380000e-39 174
27 TraesCS3A01G389500 chr7A 81.528 563 76 11 1488 2027 195758717 195759274 4.420000e-119 438
28 TraesCS3A01G389500 chr7A 91.406 128 8 3 3386 3510 156113428 156113555 4.950000e-39 172
29 TraesCS3A01G389500 chr7A 93.805 113 6 1 3392 3503 209157014 209157126 6.400000e-38 169
30 TraesCS3A01G389500 chr7A 92.708 96 2 4 3616 3709 581850900 581850992 2.340000e-27 134
31 TraesCS3A01G389500 chrUn 83.226 465 45 12 1881 2316 380365297 380365757 2.700000e-106 396
32 TraesCS3A01G389500 chrUn 83.226 465 45 12 1881 2316 399728521 399728061 2.700000e-106 396
33 TraesCS3A01G389500 chrUn 89.041 292 29 3 366 655 404926739 404927029 3.540000e-95 359
34 TraesCS3A01G389500 chrUn 89.041 292 29 3 366 655 466164471 466164181 3.540000e-95 359
35 TraesCS3A01G389500 chrUn 88.699 292 30 3 366 655 359852775 359852485 1.650000e-93 353
36 TraesCS3A01G389500 chrUn 86.066 244 29 4 1623 1862 459710633 459710875 1.330000e-64 257
37 TraesCS3A01G389500 chr6A 83.226 465 45 12 1881 2316 577738627 577739087 2.700000e-106 396
38 TraesCS3A01G389500 chr6A 94.017 117 6 1 3392 3507 214179621 214179505 3.830000e-40 176
39 TraesCS3A01G389500 chr1A 83.011 465 46 12 1881 2316 553476118 553475658 1.260000e-104 390
40 TraesCS3A01G389500 chr1A 82.151 465 46 14 1881 2316 473020289 473019833 7.610000e-97 364
41 TraesCS3A01G389500 chr1A 90.187 214 18 2 2103 2316 579982106 579981896 3.670000e-70 276
42 TraesCS3A01G389500 chr1A 86.307 241 28 4 1626 1862 579993825 579993586 1.330000e-64 257
43 TraesCS3A01G389500 chr1A 85.200 250 31 5 1623 1868 571889120 571889367 6.180000e-63 252
44 TraesCS3A01G389500 chr5A 86.475 244 28 4 1623 1862 119185707 119185465 2.850000e-66 263
45 TraesCS3A01G389500 chr5A 93.388 121 7 1 3392 3511 320214356 320214236 1.060000e-40 178
46 TraesCS3A01G389500 chr2B 86.722 241 27 4 1626 1862 762200631 762200392 2.850000e-66 263
47 TraesCS3A01G389500 chr2B 95.455 88 2 1 3622 3709 357919540 357919455 5.020000e-29 139
48 TraesCS3A01G389500 chr2B 89.216 102 8 2 3613 3712 452774138 452774038 1.410000e-24 124
49 TraesCS3A01G389500 chr5B 87.500 216 24 2 2439 2652 87118644 87118430 2.870000e-61 246
50 TraesCS3A01G389500 chr4B 81.720 279 42 8 1767 2039 200104605 200104330 1.350000e-54 224
51 TraesCS3A01G389500 chr5D 80.645 248 45 3 1846 2093 55895138 55895382 4.910000e-44 189
52 TraesCS3A01G389500 chr4D 94.828 116 5 1 3392 3506 334164503 334164388 2.960000e-41 180
53 TraesCS3A01G389500 chr4D 94.737 114 5 1 3392 3504 64390520 64390633 3.830000e-40 176
54 TraesCS3A01G389500 chr2D 94.382 89 3 1 3624 3710 208540143 208540231 6.490000e-28 135
55 TraesCS3A01G389500 chr2D 89.524 105 6 3 3618 3720 150380646 150380747 1.090000e-25 128
56 TraesCS3A01G389500 chr2A 91.919 99 4 3 3624 3720 539325577 539325673 6.490000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G389500 chr3A 638064056 638067782 3726 False 6883.000000 6883 100.000000 1 3727 1 chr3A.!!$F1 3726
1 TraesCS3A01G389500 chr3A 506243672 506244374 702 True 584.000000 584 82.459000 1626 2316 1 chr3A.!!$R3 690
2 TraesCS3A01G389500 chr3A 478044148 478044979 831 True 531.000000 531 78.830000 1488 2316 1 chr3A.!!$R2 828
3 TraesCS3A01G389500 chr3D 496739723 496743409 3686 True 1291.666667 2270 87.751667 1 3592 3 chr3D.!!$R4 3591
4 TraesCS3A01G389500 chr3B 655854029 655857321 3292 True 1190.000000 1838 87.637333 229 3592 3 chr3B.!!$R4 3363
5 TraesCS3A01G389500 chr3B 464322641 464323473 832 True 555.000000 555 79.322000 1488 2317 1 chr3B.!!$R2 829
6 TraesCS3A01G389500 chr3B 464144568 464145250 682 True 514.000000 514 80.709000 1628 2317 1 chr3B.!!$R1 689
7 TraesCS3A01G389500 chr7B 426965256 426965958 702 True 595.000000 595 82.735000 1626 2316 1 chr7B.!!$R2 690
8 TraesCS3A01G389500 chr7B 364243019 364243721 702 True 584.000000 584 82.459000 1626 2316 1 chr7B.!!$R1 690
9 TraesCS3A01G389500 chr1B 12934622 12935327 705 False 595.000000 595 82.669000 1623 2316 1 chr1B.!!$F1 693
10 TraesCS3A01G389500 chr4A 709963753 709964458 705 False 579.000000 579 82.256000 1623 2316 1 chr4A.!!$F1 693
11 TraesCS3A01G389500 chr1D 455514768 455515599 831 False 577.000000 577 79.766000 1488 2317 1 chr1D.!!$F2 829
12 TraesCS3A01G389500 chr7A 195758717 195759274 557 False 438.000000 438 81.528000 1488 2027 1 chr7A.!!$F2 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1004 0.187606 AACCCAACCAAACCCCTCTC 59.812 55.0 0.00 0.00 0.00 3.20 F
1560 1610 0.033781 CCCAATGTTGCAGTTGGTGG 59.966 55.0 19.76 11.02 42.62 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 2504 0.750546 TAGGCCGCTCACTACGTCAT 60.751 55.000 0.0 0.0 0.0 3.06 R
3522 3876 1.538075 TGCAGTTCTACGACGATGACA 59.462 47.619 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.623878 TTTCCGCACCACTTCAACTA 57.376 45.000 0.00 0.00 0.00 2.24
27 28 3.134574 TCCGCACCACTTCAACTATTT 57.865 42.857 0.00 0.00 0.00 1.40
29 30 3.886505 TCCGCACCACTTCAACTATTTTT 59.113 39.130 0.00 0.00 0.00 1.94
78 80 5.982890 TTTGAGGGAAAGGAAATCATCAC 57.017 39.130 0.00 0.00 0.00 3.06
79 81 4.934797 TGAGGGAAAGGAAATCATCACT 57.065 40.909 0.00 0.00 0.00 3.41
80 82 5.261040 TGAGGGAAAGGAAATCATCACTT 57.739 39.130 0.00 0.00 0.00 3.16
179 192 4.077184 CACCGGGGCTCGCAACTA 62.077 66.667 6.32 0.00 37.59 2.24
253 272 1.608717 CTAGAAGAGGTGCCCGCTGT 61.609 60.000 0.00 0.00 33.05 4.40
273 292 3.161866 GTTGTCCAGAAAGGCCCAATTA 58.838 45.455 0.00 0.00 37.29 1.40
284 303 5.599048 AAGGCCCAATTAAGCAGGATATA 57.401 39.130 0.00 0.00 0.00 0.86
285 304 5.184892 AGGCCCAATTAAGCAGGATATAG 57.815 43.478 0.00 0.00 0.00 1.31
286 305 4.018050 AGGCCCAATTAAGCAGGATATAGG 60.018 45.833 0.00 0.00 0.00 2.57
287 306 3.696548 GCCCAATTAAGCAGGATATAGGC 59.303 47.826 0.00 0.00 0.00 3.93
288 307 4.273318 CCCAATTAAGCAGGATATAGGCC 58.727 47.826 0.00 0.00 0.00 5.19
289 308 4.018050 CCCAATTAAGCAGGATATAGGCCT 60.018 45.833 11.78 11.78 35.75 5.19
354 373 3.532155 ACCATCCTCGCCTCTCGC 61.532 66.667 0.00 0.00 38.27 5.03
498 517 7.982354 GGCTAAGATCAAGTGTAGTATCTGTTT 59.018 37.037 0.00 0.00 0.00 2.83
664 683 5.106594 GCATCCCAACCAAATCAATTCAAAC 60.107 40.000 0.00 0.00 0.00 2.93
668 687 7.115414 TCCCAACCAAATCAATTCAAACTTTT 58.885 30.769 0.00 0.00 0.00 2.27
740 760 8.607459 CAGCATTATTAAGATATCACGGGATTC 58.393 37.037 4.97 3.51 34.89 2.52
745 765 2.239400 AGATATCACGGGATTCGCTGA 58.761 47.619 4.97 0.00 43.89 4.26
756 776 2.548875 GATTCGCTGATGAAGAGCAGT 58.451 47.619 0.00 0.00 37.94 4.40
760 780 1.923204 CGCTGATGAAGAGCAGTACAC 59.077 52.381 0.00 0.00 37.94 2.90
800 820 8.756864 TGTTTCAGTCGGTTTAATTTAATTTGC 58.243 29.630 0.00 0.00 0.00 3.68
803 823 7.653647 TCAGTCGGTTTAATTTAATTTGCTGT 58.346 30.769 0.00 0.00 0.00 4.40
887 909 7.823665 TTGACATCAAAATCAGATTCTTCTGG 58.176 34.615 0.00 0.00 40.28 3.86
898 920 5.877031 CAGATTCTTCTGGCACAATAGTTG 58.123 41.667 0.00 0.00 44.78 3.16
899 921 4.946157 AGATTCTTCTGGCACAATAGTTGG 59.054 41.667 0.00 0.00 38.70 3.77
927 949 3.905493 TGGTGGGGAATTTCCAAGTTA 57.095 42.857 17.08 0.00 38.64 2.24
943 965 6.312529 TCCAAGTTACGATATATCTGGGACT 58.687 40.000 10.93 6.62 0.00 3.85
981 1004 0.187606 AACCCAACCAAACCCCTCTC 59.812 55.000 0.00 0.00 0.00 3.20
1227 1265 2.428085 GGAGCTCGGGAAGAGGGTC 61.428 68.421 7.83 0.00 46.91 4.46
1266 1304 2.721167 CCGCCTCGAGGACAATGGA 61.721 63.158 35.69 0.00 37.39 3.41
1297 1335 0.839946 GTACATCCCATGGTGAGCCT 59.160 55.000 11.73 0.00 35.27 4.58
1298 1336 0.839277 TACATCCCATGGTGAGCCTG 59.161 55.000 11.73 5.97 35.27 4.85
1299 1337 0.915872 ACATCCCATGGTGAGCCTGA 60.916 55.000 11.73 0.00 35.27 3.86
1300 1338 0.179026 CATCCCATGGTGAGCCTGAG 60.179 60.000 11.73 0.00 35.27 3.35
1301 1339 1.992519 ATCCCATGGTGAGCCTGAGC 61.993 60.000 11.73 0.00 40.32 4.26
1302 1340 2.124403 CCATGGTGAGCCTGAGCC 60.124 66.667 2.57 0.00 41.25 4.70
1307 1345 3.334054 GTGAGCCTGAGCCCCCTT 61.334 66.667 0.00 0.00 41.25 3.95
1313 1351 2.592993 CCTGAGCCCCCTTCGTCAA 61.593 63.158 0.00 0.00 0.00 3.18
1344 1382 3.863142 TCACCGGACTCTAGCTTTTAC 57.137 47.619 9.46 0.00 0.00 2.01
1355 1393 2.175811 CTTTTACTGCGCGGTGCC 59.824 61.111 31.70 0.00 45.60 5.01
1356 1394 3.645157 CTTTTACTGCGCGGTGCCG 62.645 63.158 31.70 13.07 45.60 5.69
1374 1414 3.547054 CCGTGTAGGGCTGGTTAATTA 57.453 47.619 0.00 0.00 35.97 1.40
1403 1443 5.108187 TCCTGCTTGCTTCTAGAATGATT 57.892 39.130 5.44 0.00 0.00 2.57
1405 1454 5.356190 TCCTGCTTGCTTCTAGAATGATTTG 59.644 40.000 5.44 0.00 0.00 2.32
1408 1457 5.124457 TGCTTGCTTCTAGAATGATTTGGTC 59.876 40.000 5.44 0.00 0.00 4.02
1409 1458 5.449725 GCTTGCTTCTAGAATGATTTGGTCC 60.450 44.000 5.44 0.00 0.00 4.46
1417 1466 7.624549 TCTAGAATGATTTGGTCCTATATGCC 58.375 38.462 0.00 0.00 0.00 4.40
1426 1475 5.755409 TGGTCCTATATGCCGATTTATGT 57.245 39.130 0.00 0.00 0.00 2.29
1431 1480 9.477484 GGTCCTATATGCCGATTTATGTATAAG 57.523 37.037 0.00 0.00 0.00 1.73
1453 1502 5.989477 AGCATTAGGTTATGTTGAGCACTA 58.011 37.500 0.00 0.00 0.00 2.74
1467 1516 1.067212 AGCACTATCCTTTACTCCGCG 59.933 52.381 0.00 0.00 0.00 6.46
1472 1521 1.734163 ATCCTTTACTCCGCGGTTTG 58.266 50.000 27.15 18.46 0.00 2.93
1473 1522 0.393820 TCCTTTACTCCGCGGTTTGT 59.606 50.000 27.15 22.95 0.00 2.83
1474 1523 0.515564 CCTTTACTCCGCGGTTTGTG 59.484 55.000 27.15 13.43 0.00 3.33
1475 1524 1.223187 CTTTACTCCGCGGTTTGTGT 58.777 50.000 27.15 18.19 0.00 3.72
1477 1526 2.522836 TTACTCCGCGGTTTGTGTTA 57.477 45.000 27.15 8.58 0.00 2.41
1478 1527 1.782044 TACTCCGCGGTTTGTGTTAC 58.218 50.000 27.15 0.00 0.00 2.50
1479 1528 0.105408 ACTCCGCGGTTTGTGTTACT 59.895 50.000 27.15 0.00 0.00 2.24
1480 1529 0.788391 CTCCGCGGTTTGTGTTACTC 59.212 55.000 27.15 0.00 0.00 2.59
1518 1568 7.524912 CATCTAAGATCAACTCAAAGTGTTGG 58.475 38.462 10.79 0.00 43.36 3.77
1560 1610 0.033781 CCCAATGTTGCAGTTGGTGG 59.966 55.000 19.76 11.02 42.62 4.61
1567 1617 2.094286 TGTTGCAGTTGGTGGTTTTCTG 60.094 45.455 0.00 0.00 0.00 3.02
1574 1624 4.154918 CAGTTGGTGGTTTTCTGATAGAGC 59.845 45.833 0.00 0.00 0.00 4.09
1596 1663 5.069516 AGCTAAAATCAATTTGGATGCCGAT 59.930 36.000 0.00 0.00 31.55 4.18
1603 1670 1.838112 TTTGGATGCCGATGAAAGCT 58.162 45.000 0.00 0.00 0.00 3.74
1838 1917 9.541143 AAATAAACCGAACATCAAATCTTTTGT 57.459 25.926 0.39 0.00 0.00 2.83
1850 1929 8.819974 CATCAAATCTTTTGTTGTTTGTTAGCT 58.180 29.630 0.00 0.00 34.20 3.32
1863 1942 2.180276 TGTTAGCTCTCCTGAGAACCC 58.820 52.381 0.00 0.00 42.73 4.11
1895 1974 5.887754 TGCTTGGAAGACTAATTTAACCCT 58.112 37.500 0.00 0.00 0.00 4.34
1896 1975 5.944007 TGCTTGGAAGACTAATTTAACCCTC 59.056 40.000 0.00 0.00 0.00 4.30
1922 2004 9.796062 CCATTTTTCTGTTTATTGTTCGAAATG 57.204 29.630 0.00 0.00 33.11 2.32
1945 2027 4.035324 GGCTTCAGTTCACATGATCATGAG 59.965 45.833 36.37 29.44 41.20 2.90
1946 2028 4.634883 GCTTCAGTTCACATGATCATGAGT 59.365 41.667 36.37 17.86 41.20 3.41
1947 2029 5.447413 GCTTCAGTTCACATGATCATGAGTG 60.447 44.000 36.37 26.29 41.20 3.51
2037 2134 7.090173 GCACCTTGCTAACAAAATTCTGAATA 58.910 34.615 2.85 0.00 40.96 1.75
2039 2136 9.079833 CACCTTGCTAACAAAATTCTGAATATG 57.920 33.333 2.85 8.62 34.74 1.78
2227 2353 3.330701 TGATGCAGAGGTACCCTTCTTTT 59.669 43.478 8.74 0.00 31.76 2.27
2231 2357 3.620226 GCAGAGGTACCCTTCTTTTCCTC 60.620 52.174 8.74 0.00 40.94 3.71
2257 2383 7.251281 GGAGTTATATTTGGTTCAGTTTGCTC 58.749 38.462 0.00 0.00 0.00 4.26
2269 2396 2.549754 CAGTTTGCTCGATCTGGTTTGT 59.450 45.455 0.00 0.00 0.00 2.83
2350 2478 6.997476 TGGACTATGCATGCTGAAATGTATAA 59.003 34.615 20.33 0.00 35.54 0.98
2376 2504 9.590828 AATGGATCATATGATTTGTATGTGGAA 57.409 29.630 19.11 0.00 34.37 3.53
2384 2512 6.902224 TGATTTGTATGTGGAATGACGTAG 57.098 37.500 0.00 0.00 0.00 3.51
2405 2535 3.207354 GCGGCCTAGCTGTCACTA 58.793 61.111 0.00 0.00 37.24 2.74
2413 2543 4.508662 GCCTAGCTGTCACTAAATGTTCT 58.491 43.478 0.00 0.00 0.00 3.01
2415 2545 5.751028 GCCTAGCTGTCACTAAATGTTCTAG 59.249 44.000 0.00 0.00 0.00 2.43
2422 2552 7.569591 GCTGTCACTAAATGTTCTAGTGTTGAC 60.570 40.741 9.22 0.00 44.39 3.18
2424 2554 7.931407 TGTCACTAAATGTTCTAGTGTTGACAT 59.069 33.333 9.22 0.00 44.39 3.06
2491 2621 4.819630 TGTTCTACATTTCAGTTGGTGACC 59.180 41.667 0.00 0.00 33.71 4.02
2523 2653 5.957796 GTGATAAACTGCTGTAAATGTACGC 59.042 40.000 0.00 3.74 32.40 4.42
2525 2655 2.074547 ACTGCTGTAAATGTACGCGT 57.925 45.000 19.17 19.17 34.52 6.01
2621 2752 2.172505 TGGAACTGCTTCTGTTGAGGAA 59.827 45.455 0.00 0.00 0.00 3.36
2642 2773 2.797177 AAGGCTTTGGAGATCCTGTC 57.203 50.000 0.00 0.00 36.82 3.51
2734 2865 9.866798 TCATGAAGATATGTCATAGATGCTTAC 57.133 33.333 0.00 0.00 33.91 2.34
2735 2866 9.872721 CATGAAGATATGTCATAGATGCTTACT 57.127 33.333 0.00 0.00 33.91 2.24
2736 2867 9.872721 ATGAAGATATGTCATAGATGCTTACTG 57.127 33.333 0.00 0.00 33.91 2.74
2737 2868 9.082313 TGAAGATATGTCATAGATGCTTACTGA 57.918 33.333 0.00 0.00 0.00 3.41
2740 2871 9.252635 AGATATGTCATAGATGCTTACTGATCA 57.747 33.333 0.00 0.00 0.00 2.92
2783 2914 1.585668 CTTCATGTCTCTTAGTGCGCG 59.414 52.381 0.00 0.00 0.00 6.86
2831 2962 5.345702 CCTTTTGTGCTGAACATGATATGG 58.654 41.667 0.00 0.00 38.99 2.74
2839 2970 3.140623 TGAACATGATATGGATGTGCCG 58.859 45.455 0.00 0.00 40.66 5.69
2878 3009 9.924650 AAGTATTCTAGAATGTCGTTTAGTTGT 57.075 29.630 25.22 0.00 32.50 3.32
2893 3024 8.298854 TCGTTTAGTTGTCTAATGTAAGCTACA 58.701 33.333 0.00 0.00 43.80 2.74
2904 3035 4.425180 TGTAAGCTACAAAGGTGGTTGA 57.575 40.909 0.00 0.00 35.38 3.18
2907 3038 3.508845 AGCTACAAAGGTGGTTGATGT 57.491 42.857 0.00 0.00 32.59 3.06
2918 3049 3.057315 GGTGGTTGATGTTCTGAATGGTG 60.057 47.826 0.00 0.00 0.00 4.17
2926 3057 6.413892 TGATGTTCTGAATGGTGTGCTTATA 58.586 36.000 0.00 0.00 0.00 0.98
2931 3063 7.066163 TGTTCTGAATGGTGTGCTTATAATGAG 59.934 37.037 0.00 0.00 0.00 2.90
2937 3069 3.209410 GTGTGCTTATAATGAGCCAGCT 58.791 45.455 0.00 0.00 39.38 4.24
2967 3099 9.573166 TTCATCTTCTAAATTTCTTTCTCCACA 57.427 29.630 0.00 0.00 0.00 4.17
3063 3195 2.749621 GTTGCTTGTTGAGGGGATACAG 59.250 50.000 0.00 0.00 39.74 2.74
3094 3226 5.359576 TGTTGTTCATTGCTCCTTTAGTTGT 59.640 36.000 0.00 0.00 0.00 3.32
3098 3230 7.648142 TGTTCATTGCTCCTTTAGTTGTTAAG 58.352 34.615 0.00 0.00 0.00 1.85
3129 3261 1.294041 TCCCACATTGTCCTATGGCA 58.706 50.000 0.00 0.00 0.00 4.92
3130 3262 1.852309 TCCCACATTGTCCTATGGCAT 59.148 47.619 4.88 4.88 0.00 4.40
3131 3263 2.244510 TCCCACATTGTCCTATGGCATT 59.755 45.455 4.78 0.00 0.00 3.56
3132 3264 2.363038 CCCACATTGTCCTATGGCATTG 59.637 50.000 4.78 3.02 0.00 2.82
3133 3265 3.289836 CCACATTGTCCTATGGCATTGA 58.710 45.455 4.78 0.00 0.00 2.57
3134 3266 3.700539 CCACATTGTCCTATGGCATTGAA 59.299 43.478 4.78 0.00 0.00 2.69
3135 3267 4.160065 CCACATTGTCCTATGGCATTGAAA 59.840 41.667 4.78 0.00 0.00 2.69
3136 3268 5.104374 CACATTGTCCTATGGCATTGAAAC 58.896 41.667 4.78 6.40 0.00 2.78
3145 3277 6.040729 TCCTATGGCATTGAAACCATATGTTG 59.959 38.462 4.78 1.22 45.52 3.33
3152 3284 7.401080 GCATTGAAACCATATGTTGTATTTGC 58.599 34.615 1.24 0.39 37.23 3.68
3165 3297 5.215160 GTTGTATTTGCTGTCAGGTCAAAG 58.785 41.667 1.14 0.00 33.83 2.77
3166 3298 4.460263 TGTATTTGCTGTCAGGTCAAAGT 58.540 39.130 1.14 0.00 33.83 2.66
3167 3299 3.996150 ATTTGCTGTCAGGTCAAAGTG 57.004 42.857 1.14 0.00 33.83 3.16
3168 3300 2.418368 TTGCTGTCAGGTCAAAGTGT 57.582 45.000 1.14 0.00 0.00 3.55
3169 3301 2.418368 TGCTGTCAGGTCAAAGTGTT 57.582 45.000 1.14 0.00 0.00 3.32
3170 3302 2.288666 TGCTGTCAGGTCAAAGTGTTC 58.711 47.619 1.14 0.00 0.00 3.18
3171 3303 2.092968 TGCTGTCAGGTCAAAGTGTTCT 60.093 45.455 1.14 0.00 0.00 3.01
3172 3304 3.133901 TGCTGTCAGGTCAAAGTGTTCTA 59.866 43.478 1.14 0.00 0.00 2.10
3173 3305 4.127171 GCTGTCAGGTCAAAGTGTTCTAA 58.873 43.478 1.14 0.00 0.00 2.10
3174 3306 4.574828 GCTGTCAGGTCAAAGTGTTCTAAA 59.425 41.667 1.14 0.00 0.00 1.85
3215 3347 7.069578 TGACCTTATATTAAGGACTGGTGACTC 59.930 40.741 17.93 4.67 39.81 3.36
3218 3350 3.594603 ATTAAGGACTGGTGACTCGTG 57.405 47.619 0.00 0.00 0.00 4.35
3223 3355 0.241481 GACTGGTGACTCGTGTCCTC 59.759 60.000 14.57 7.98 42.28 3.71
3228 3360 1.340248 GGTGACTCGTGTCCTCTTTCA 59.660 52.381 14.57 0.00 42.28 2.69
3229 3361 2.608261 GGTGACTCGTGTCCTCTTTCAG 60.608 54.545 14.57 0.00 42.28 3.02
3235 3367 5.368989 ACTCGTGTCCTCTTTCAGAAAAAT 58.631 37.500 0.00 0.00 0.00 1.82
3239 3371 8.215926 TCGTGTCCTCTTTCAGAAAAATAAAA 57.784 30.769 0.00 0.00 0.00 1.52
3293 3425 1.342819 GGGCTATGCTGTCTGACTAGG 59.657 57.143 9.51 1.03 0.00 3.02
3295 3427 2.035632 GCTATGCTGTCTGACTAGGGT 58.964 52.381 9.51 0.00 0.00 4.34
3308 3440 8.996655 TGTCTGACTAGGGTATAGTCTAAACTA 58.003 37.037 14.29 0.00 43.15 2.24
3309 3441 9.271828 GTCTGACTAGGGTATAGTCTAAACTAC 57.728 40.741 14.29 3.05 43.15 2.73
3310 3442 8.435982 TCTGACTAGGGTATAGTCTAAACTACC 58.564 40.741 14.29 0.98 43.15 3.18
3311 3443 8.106017 TGACTAGGGTATAGTCTAAACTACCA 57.894 38.462 14.29 0.00 43.15 3.25
3312 3444 8.730948 TGACTAGGGTATAGTCTAAACTACCAT 58.269 37.037 14.29 5.80 43.15 3.55
3313 3445 9.585369 GACTAGGGTATAGTCTAAACTACCATT 57.415 37.037 9.42 2.10 40.74 3.16
3314 3446 9.364653 ACTAGGGTATAGTCTAAACTACCATTG 57.635 37.037 9.42 6.60 40.74 2.82
3315 3447 7.613551 AGGGTATAGTCTAAACTACCATTGG 57.386 40.000 0.00 0.00 40.74 3.16
3316 3448 7.367828 AGGGTATAGTCTAAACTACCATTGGA 58.632 38.462 10.37 0.00 40.74 3.53
3317 3449 7.847848 AGGGTATAGTCTAAACTACCATTGGAA 59.152 37.037 10.37 0.00 40.74 3.53
3318 3450 8.657712 GGGTATAGTCTAAACTACCATTGGAAT 58.342 37.037 10.37 0.00 40.74 3.01
3319 3451 9.490379 GGTATAGTCTAAACTACCATTGGAATG 57.510 37.037 10.37 1.43 40.74 2.67
3324 3456 9.975218 AGTCTAAACTACCATTGGAATGTTATT 57.025 29.630 10.37 0.81 32.23 1.40
3326 3458 9.747898 TCTAAACTACCATTGGAATGTTATTGT 57.252 29.630 10.37 0.00 34.60 2.71
3331 3463 9.303116 ACTACCATTGGAATGTTATTGTAAACA 57.697 29.630 10.37 0.00 43.16 2.83
3332 3464 9.787532 CTACCATTGGAATGTTATTGTAAACAG 57.212 33.333 10.37 0.00 42.33 3.16
3333 3465 8.189119 ACCATTGGAATGTTATTGTAAACAGT 57.811 30.769 10.37 0.00 42.33 3.55
3334 3466 8.646900 ACCATTGGAATGTTATTGTAAACAGTT 58.353 29.630 10.37 0.00 42.33 3.16
3335 3467 9.487790 CCATTGGAATGTTATTGTAAACAGTTT 57.512 29.630 3.49 3.49 42.33 2.66
3338 3470 9.877178 TTGGAATGTTATTGTAAACAGTTTGTT 57.123 25.926 8.93 0.00 43.41 2.83
3339 3471 9.522804 TGGAATGTTATTGTAAACAGTTTGTTC 57.477 29.630 8.93 0.52 40.14 3.18
3340 3472 9.744468 GGAATGTTATTGTAAACAGTTTGTTCT 57.256 29.630 8.93 0.00 40.14 3.01
3353 3485 7.027778 ACAGTTTGTTCTTGTCATCTTAACC 57.972 36.000 0.00 0.00 0.00 2.85
3361 3493 7.981789 TGTTCTTGTCATCTTAACCTATAGCTG 59.018 37.037 0.00 0.00 0.00 4.24
3364 3496 6.233905 TGTCATCTTAACCTATAGCTGCAA 57.766 37.500 1.02 0.00 0.00 4.08
3370 3502 7.938140 TCTTAACCTATAGCTGCAAAATGTT 57.062 32.000 1.02 2.42 0.00 2.71
3382 3514 7.264947 AGCTGCAAAATGTTTTAACTAACACT 58.735 30.769 1.02 0.00 40.53 3.55
3383 3515 7.222611 AGCTGCAAAATGTTTTAACTAACACTG 59.777 33.333 1.02 0.00 40.53 3.66
3386 3518 9.856488 TGCAAAATGTTTTAACTAACACTGTAA 57.144 25.926 0.00 0.00 40.53 2.41
3391 3523 7.018635 TGTTTTAACTAACACTGTAACAGGC 57.981 36.000 0.00 0.00 35.51 4.85
3392 3524 6.824704 TGTTTTAACTAACACTGTAACAGGCT 59.175 34.615 0.00 0.00 35.51 4.58
3393 3525 7.986320 TGTTTTAACTAACACTGTAACAGGCTA 59.014 33.333 0.00 0.00 35.51 3.93
3394 3526 7.951530 TTTAACTAACACTGTAACAGGCTAC 57.048 36.000 0.00 0.00 35.51 3.58
3397 3610 6.906157 ACTAACACTGTAACAGGCTACTAA 57.094 37.500 0.00 0.00 35.51 2.24
3402 3615 5.484290 ACACTGTAACAGGCTACTAAGGATT 59.516 40.000 0.00 0.00 35.51 3.01
3406 3619 9.430399 ACTGTAACAGGCTACTAAGGATTTATA 57.570 33.333 0.00 0.00 35.51 0.98
3444 3657 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3456 3669 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3460 3814 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
3499 3853 5.543020 AGACTTATATTTAGGAACGGAGGGG 59.457 44.000 0.00 0.00 0.00 4.79
3522 3876 7.558807 GGGGGTAGTTATTATAAGCTGTTTTGT 59.441 37.037 0.00 0.00 0.00 2.83
3532 3886 1.526887 AGCTGTTTTGTGTCATCGTCG 59.473 47.619 0.00 0.00 0.00 5.12
3541 3895 1.912110 GTGTCATCGTCGTAGAACTGC 59.088 52.381 0.00 0.00 39.69 4.40
3548 3902 3.499048 TCGTCGTAGAACTGCAGAATTC 58.501 45.455 23.35 14.81 39.69 2.17
3553 3907 1.896220 AGAACTGCAGAATTCGGCAA 58.104 45.000 28.88 15.77 45.68 4.52
3555 3909 0.242017 AACTGCAGAATTCGGCAAGC 59.758 50.000 28.88 15.91 45.68 4.01
3556 3910 0.607489 ACTGCAGAATTCGGCAAGCT 60.607 50.000 28.88 14.70 45.68 3.74
3557 3916 1.339055 ACTGCAGAATTCGGCAAGCTA 60.339 47.619 28.88 10.38 45.68 3.32
3592 3956 3.916761 TGCCATCTTCAAACTGAATTGC 58.083 40.909 0.00 0.00 35.59 3.56
3593 3957 3.321396 TGCCATCTTCAAACTGAATTGCA 59.679 39.130 0.00 0.00 35.59 4.08
3604 3968 2.747396 TGAATTGCAGAATTGGGCAC 57.253 45.000 0.34 0.00 40.23 5.01
3605 3969 1.067706 TGAATTGCAGAATTGGGCACG 60.068 47.619 0.34 0.00 40.23 5.34
3606 3970 0.968405 AATTGCAGAATTGGGCACGT 59.032 45.000 0.34 0.00 40.23 4.49
3607 3971 1.832883 ATTGCAGAATTGGGCACGTA 58.167 45.000 0.34 0.00 40.23 3.57
3608 3972 0.878416 TTGCAGAATTGGGCACGTAC 59.122 50.000 0.34 0.00 40.23 3.67
3609 3973 0.250510 TGCAGAATTGGGCACGTACA 60.251 50.000 0.00 0.00 34.58 2.90
3610 3974 1.094785 GCAGAATTGGGCACGTACAT 58.905 50.000 0.00 0.00 0.00 2.29
3611 3975 1.202177 GCAGAATTGGGCACGTACATG 60.202 52.381 0.00 0.00 0.00 3.21
3612 3976 1.401552 CAGAATTGGGCACGTACATGG 59.598 52.381 0.00 0.00 0.00 3.66
3613 3977 1.004277 AGAATTGGGCACGTACATGGT 59.996 47.619 0.00 0.00 0.00 3.55
3614 3978 1.400494 GAATTGGGCACGTACATGGTC 59.600 52.381 0.00 0.00 0.00 4.02
3615 3979 0.618458 ATTGGGCACGTACATGGTCT 59.382 50.000 0.00 0.00 0.00 3.85
3616 3980 1.268066 TTGGGCACGTACATGGTCTA 58.732 50.000 0.00 0.00 0.00 2.59
3617 3981 1.268066 TGGGCACGTACATGGTCTAA 58.732 50.000 0.00 0.00 0.00 2.10
3618 3982 1.066716 TGGGCACGTACATGGTCTAAC 60.067 52.381 0.00 0.00 0.00 2.34
3619 3983 1.066716 GGGCACGTACATGGTCTAACA 60.067 52.381 0.00 0.00 0.00 2.41
3620 3984 2.419574 GGGCACGTACATGGTCTAACAT 60.420 50.000 0.00 0.00 0.00 2.71
3621 3985 3.267483 GGCACGTACATGGTCTAACATT 58.733 45.455 0.00 0.00 0.00 2.71
3622 3986 3.063452 GGCACGTACATGGTCTAACATTG 59.937 47.826 0.00 0.00 0.00 2.82
3623 3987 3.063452 GCACGTACATGGTCTAACATTGG 59.937 47.826 0.00 0.00 0.00 3.16
3624 3988 4.250464 CACGTACATGGTCTAACATTGGT 58.750 43.478 0.00 0.00 0.00 3.67
3625 3989 5.412640 CACGTACATGGTCTAACATTGGTA 58.587 41.667 0.00 0.00 0.00 3.25
3626 3990 5.290158 CACGTACATGGTCTAACATTGGTAC 59.710 44.000 0.00 0.00 31.81 3.34
3627 3991 5.186409 ACGTACATGGTCTAACATTGGTACT 59.814 40.000 0.00 0.00 32.43 2.73
3628 3992 5.747197 CGTACATGGTCTAACATTGGTACTC 59.253 44.000 0.00 0.00 32.43 2.59
3629 3993 5.099042 ACATGGTCTAACATTGGTACTCC 57.901 43.478 0.00 0.00 0.00 3.85
3630 3994 4.080526 ACATGGTCTAACATTGGTACTCCC 60.081 45.833 0.00 0.00 0.00 4.30
3631 3995 3.798515 TGGTCTAACATTGGTACTCCCT 58.201 45.455 0.00 0.00 0.00 4.20
3632 3996 3.773119 TGGTCTAACATTGGTACTCCCTC 59.227 47.826 0.00 0.00 0.00 4.30
3633 3997 4.031611 GGTCTAACATTGGTACTCCCTCT 58.968 47.826 0.00 0.00 0.00 3.69
3634 3998 5.206587 GGTCTAACATTGGTACTCCCTCTA 58.793 45.833 0.00 0.00 0.00 2.43
3635 3999 5.659971 GGTCTAACATTGGTACTCCCTCTAA 59.340 44.000 0.00 0.00 0.00 2.10
3636 4000 6.155737 GGTCTAACATTGGTACTCCCTCTAAA 59.844 42.308 0.00 0.00 0.00 1.85
3637 4001 7.266400 GTCTAACATTGGTACTCCCTCTAAAG 58.734 42.308 0.00 0.00 0.00 1.85
3638 4002 7.123847 GTCTAACATTGGTACTCCCTCTAAAGA 59.876 40.741 0.00 0.00 0.00 2.52
3639 4003 6.697641 AACATTGGTACTCCCTCTAAAGAA 57.302 37.500 0.00 0.00 0.00 2.52
3640 4004 6.697641 ACATTGGTACTCCCTCTAAAGAAA 57.302 37.500 0.00 0.00 0.00 2.52
3641 4005 7.272144 ACATTGGTACTCCCTCTAAAGAAAT 57.728 36.000 0.00 0.00 0.00 2.17
3642 4006 8.388656 ACATTGGTACTCCCTCTAAAGAAATA 57.611 34.615 0.00 0.00 0.00 1.40
3643 4007 9.004231 ACATTGGTACTCCCTCTAAAGAAATAT 57.996 33.333 0.00 0.00 0.00 1.28
3647 4011 9.947189 TGGTACTCCCTCTAAAGAAATATAAGA 57.053 33.333 0.00 0.00 0.00 2.10
3649 4013 9.917129 GTACTCCCTCTAAAGAAATATAAGAGC 57.083 37.037 0.00 0.00 33.80 4.09
3650 4014 8.554490 ACTCCCTCTAAAGAAATATAAGAGCA 57.446 34.615 0.00 0.00 33.80 4.26
3651 4015 9.165057 ACTCCCTCTAAAGAAATATAAGAGCAT 57.835 33.333 0.00 0.00 33.80 3.79
3704 4068 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
3705 4069 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
3706 4070 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
3707 4071 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
3713 4077 5.740290 TTCTTTACAGAGGGAGTACTTGG 57.260 43.478 0.00 0.00 0.00 3.61
3714 4078 4.748701 TCTTTACAGAGGGAGTACTTGGT 58.251 43.478 0.00 0.00 0.00 3.67
3715 4079 5.895807 TCTTTACAGAGGGAGTACTTGGTA 58.104 41.667 0.00 0.00 0.00 3.25
3716 4080 5.950549 TCTTTACAGAGGGAGTACTTGGTAG 59.049 44.000 0.00 0.00 0.00 3.18
3717 4081 2.458620 ACAGAGGGAGTACTTGGTAGC 58.541 52.381 0.00 0.00 0.00 3.58
3718 4082 2.043252 ACAGAGGGAGTACTTGGTAGCT 59.957 50.000 0.00 0.00 0.00 3.32
3719 4083 2.428890 CAGAGGGAGTACTTGGTAGCTG 59.571 54.545 0.00 0.00 0.00 4.24
3720 4084 2.043252 AGAGGGAGTACTTGGTAGCTGT 59.957 50.000 0.00 0.00 0.00 4.40
3721 4085 2.427812 GAGGGAGTACTTGGTAGCTGTC 59.572 54.545 0.00 0.00 0.00 3.51
3722 4086 2.176889 GGGAGTACTTGGTAGCTGTCA 58.823 52.381 0.00 0.00 0.00 3.58
3723 4087 2.565834 GGGAGTACTTGGTAGCTGTCAA 59.434 50.000 0.00 0.00 0.00 3.18
3724 4088 3.197983 GGGAGTACTTGGTAGCTGTCAAT 59.802 47.826 0.00 0.00 0.00 2.57
3725 4089 4.184629 GGAGTACTTGGTAGCTGTCAATG 58.815 47.826 0.00 0.00 0.00 2.82
3726 4090 4.184629 GAGTACTTGGTAGCTGTCAATGG 58.815 47.826 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.556915 AGTGATGATTTCCTCACCGTAAAA 58.443 37.500 11.01 0.00 42.18 1.52
33 34 3.703001 AAGTGATGATTTCCTCACCGT 57.297 42.857 11.01 0.12 42.18 4.83
34 35 5.376854 AAAAAGTGATGATTTCCTCACCG 57.623 39.130 11.01 0.00 42.18 4.94
354 373 1.226323 CGAGTCGCGTAGAACCAGG 60.226 63.158 5.77 0.00 34.64 4.45
446 465 3.773119 AGGCCGAGAAAGGTATGAGTTAA 59.227 43.478 0.00 0.00 0.00 2.01
447 466 3.371965 AGGCCGAGAAAGGTATGAGTTA 58.628 45.455 0.00 0.00 0.00 2.24
565 584 2.219875 CCACTGTGGTGAGCCCTCT 61.220 63.158 18.76 0.00 45.61 3.69
566 585 2.348998 CCACTGTGGTGAGCCCTC 59.651 66.667 18.76 0.00 45.61 4.30
572 591 2.203337 GGCAAGCCACTGTGGTGA 60.203 61.111 26.48 0.00 45.61 4.02
610 629 0.669318 GCTGTAGTGCAACGCCTGTA 60.669 55.000 0.00 0.00 45.86 2.74
611 630 1.961277 GCTGTAGTGCAACGCCTGT 60.961 57.895 0.00 0.00 45.86 4.00
643 662 5.885449 AGTTTGAATTGATTTGGTTGGGA 57.115 34.783 0.00 0.00 0.00 4.37
668 687 9.823647 TCAACTCTGTTTGCCATTTTTAAATAA 57.176 25.926 0.00 0.00 0.00 1.40
680 699 6.818644 TCACTATTAGATCAACTCTGTTTGCC 59.181 38.462 0.00 0.00 35.28 4.52
681 700 7.834068 TCACTATTAGATCAACTCTGTTTGC 57.166 36.000 0.00 0.00 35.28 3.68
733 753 1.495878 CTCTTCATCAGCGAATCCCG 58.504 55.000 0.00 0.00 42.21 5.14
740 760 1.923204 GTGTACTGCTCTTCATCAGCG 59.077 52.381 0.00 0.00 40.01 5.18
745 765 4.067896 CCAAAGTGTGTACTGCTCTTCAT 58.932 43.478 0.00 0.00 37.19 2.57
756 776 7.043961 TGAAACATTAATGCCAAAGTGTGTA 57.956 32.000 15.48 0.00 0.00 2.90
760 780 5.343058 CGACTGAAACATTAATGCCAAAGTG 59.657 40.000 15.48 3.22 0.00 3.16
800 820 0.253610 TGGCCCGGGTATTTGTACAG 59.746 55.000 24.63 0.00 0.00 2.74
803 823 2.830651 ATTTGGCCCGGGTATTTGTA 57.169 45.000 24.63 1.54 0.00 2.41
813 833 3.545031 CGTTTTTGAACAAATTTGGCCCG 60.545 43.478 21.74 8.49 0.00 6.13
853 874 7.874940 TCTGATTTTGATGTCAAATCTTCGTT 58.125 30.769 8.82 0.00 44.30 3.85
883 905 2.284754 TTGCCAACTATTGTGCCAGA 57.715 45.000 0.00 0.00 0.00 3.86
884 906 3.059166 GTTTTGCCAACTATTGTGCCAG 58.941 45.455 0.00 0.00 0.00 4.85
885 907 2.697751 AGTTTTGCCAACTATTGTGCCA 59.302 40.909 0.00 0.00 0.00 4.92
886 908 3.385193 AGTTTTGCCAACTATTGTGCC 57.615 42.857 0.00 0.00 0.00 5.01
887 909 3.494251 CCAAGTTTTGCCAACTATTGTGC 59.506 43.478 0.00 0.00 0.00 4.57
890 912 4.057432 CCACCAAGTTTTGCCAACTATTG 58.943 43.478 0.00 0.00 0.00 1.90
892 914 2.632512 CCCACCAAGTTTTGCCAACTAT 59.367 45.455 0.00 0.00 0.00 2.12
896 918 0.325671 TCCCCACCAAGTTTTGCCAA 60.326 50.000 0.00 0.00 0.00 4.52
897 919 0.325671 TTCCCCACCAAGTTTTGCCA 60.326 50.000 0.00 0.00 0.00 4.92
898 920 1.055849 ATTCCCCACCAAGTTTTGCC 58.944 50.000 0.00 0.00 0.00 4.52
899 921 2.928801 AATTCCCCACCAAGTTTTGC 57.071 45.000 0.00 0.00 0.00 3.68
927 949 5.712917 GGAAAGAGAGTCCCAGATATATCGT 59.287 44.000 7.08 0.00 0.00 3.73
943 965 3.506398 GTTTTGGGAATGGGGAAAGAGA 58.494 45.455 0.00 0.00 0.00 3.10
1200 1238 1.045350 TCCCGAGCTCCTTGAGGATG 61.045 60.000 8.47 0.00 44.46 3.51
1266 1304 1.141053 GGGATGTACTTGAGGGCGAAT 59.859 52.381 0.00 0.00 0.00 3.34
1297 1335 2.111999 CTGTTGACGAAGGGGGCTCA 62.112 60.000 0.00 0.00 0.00 4.26
1298 1336 1.376037 CTGTTGACGAAGGGGGCTC 60.376 63.158 0.00 0.00 0.00 4.70
1299 1337 2.147387 ACTGTTGACGAAGGGGGCT 61.147 57.895 0.00 0.00 0.00 5.19
1300 1338 1.966451 CACTGTTGACGAAGGGGGC 60.966 63.158 0.00 0.00 0.00 5.80
1301 1339 0.324943 ATCACTGTTGACGAAGGGGG 59.675 55.000 0.00 0.00 33.38 5.40
1302 1340 1.726853 GATCACTGTTGACGAAGGGG 58.273 55.000 0.00 0.00 33.38 4.79
1307 1345 2.785713 TGAACGATCACTGTTGACGA 57.214 45.000 0.00 0.00 33.38 4.20
1355 1393 3.463944 CCTAATTAACCAGCCCTACACG 58.536 50.000 0.00 0.00 0.00 4.49
1356 1394 3.434596 CCCCTAATTAACCAGCCCTACAC 60.435 52.174 0.00 0.00 0.00 2.90
1358 1396 3.050835 TCCCCTAATTAACCAGCCCTAC 58.949 50.000 0.00 0.00 0.00 3.18
1363 1401 4.145052 CAGGAATCCCCTAATTAACCAGC 58.855 47.826 0.00 0.00 45.60 4.85
1403 1443 6.121776 ACATAAATCGGCATATAGGACCAA 57.878 37.500 0.00 0.00 0.00 3.67
1405 1454 9.477484 CTTATACATAAATCGGCATATAGGACC 57.523 37.037 0.00 0.00 0.00 4.46
1408 1457 8.887036 TGCTTATACATAAATCGGCATATAGG 57.113 34.615 0.00 0.00 0.00 2.57
1426 1475 8.210946 AGTGCTCAACATAACCTAATGCTTATA 58.789 33.333 0.00 0.00 0.00 0.98
1431 1480 6.073003 GGATAGTGCTCAACATAACCTAATGC 60.073 42.308 0.00 0.00 0.00 3.56
1453 1502 1.002773 ACAAACCGCGGAGTAAAGGAT 59.997 47.619 35.90 1.64 0.00 3.24
1467 1516 6.920569 ATTCCATATCGAGTAACACAAACC 57.079 37.500 0.00 0.00 0.00 3.27
1472 1521 5.984233 TGCAATTCCATATCGAGTAACAC 57.016 39.130 0.00 0.00 0.00 3.32
1473 1522 6.524734 AGATGCAATTCCATATCGAGTAACA 58.475 36.000 0.00 0.00 0.00 2.41
1474 1523 8.534333 TTAGATGCAATTCCATATCGAGTAAC 57.466 34.615 0.00 0.00 0.00 2.50
1475 1524 8.585018 TCTTAGATGCAATTCCATATCGAGTAA 58.415 33.333 0.00 0.00 0.00 2.24
1477 1526 6.997655 TCTTAGATGCAATTCCATATCGAGT 58.002 36.000 0.00 0.00 0.00 4.18
1478 1527 7.763071 TGATCTTAGATGCAATTCCATATCGAG 59.237 37.037 0.00 0.00 0.00 4.04
1479 1528 7.614494 TGATCTTAGATGCAATTCCATATCGA 58.386 34.615 0.00 0.00 0.00 3.59
1480 1529 7.838771 TGATCTTAGATGCAATTCCATATCG 57.161 36.000 0.00 0.00 0.00 2.92
1518 1568 7.604927 TGGGAACATAACTACAGATGTGTAAAC 59.395 37.037 4.07 0.00 35.22 2.01
1567 1617 7.811713 GGCATCCAAATTGATTTTAGCTCTATC 59.188 37.037 0.00 0.00 0.00 2.08
1574 1624 6.506147 TCATCGGCATCCAAATTGATTTTAG 58.494 36.000 0.00 0.00 0.00 1.85
1596 1663 5.464030 ACTTCGTCCTAACTAAGCTTTCA 57.536 39.130 3.20 0.00 32.78 2.69
1820 1898 7.674564 ACAAACAACAAAAGATTTGATGTTCG 58.325 30.769 22.90 17.76 42.11 3.95
1838 1917 4.955811 TCTCAGGAGAGCTAACAAACAA 57.044 40.909 0.00 0.00 41.81 2.83
1847 1926 1.926665 TCTAGGGTTCTCAGGAGAGCT 59.073 52.381 12.01 0.00 41.81 4.09
1850 1929 2.292323 GGGTTCTAGGGTTCTCAGGAGA 60.292 54.545 0.00 0.00 35.27 3.71
1863 1942 2.569404 AGTCTTCCAAGCAGGGTTCTAG 59.431 50.000 0.00 0.00 38.24 2.43
1895 1974 9.757227 ATTTCGAACAATAAACAGAAAAATGGA 57.243 25.926 0.00 0.00 32.44 3.41
1896 1975 9.796062 CATTTCGAACAATAAACAGAAAAATGG 57.204 29.630 0.00 0.00 32.44 3.16
1922 2004 3.943381 TCATGATCATGTGAACTGAAGCC 59.057 43.478 30.01 0.00 39.72 4.35
2037 2134 2.128771 AATTTACCTGGAGCGTGCAT 57.871 45.000 0.00 0.00 0.00 3.96
2039 2136 2.084546 AGAAATTTACCTGGAGCGTGC 58.915 47.619 0.00 0.00 0.00 5.34
2101 2202 5.104735 ACCATTCTGCAAAGGGTTACAAAAA 60.105 36.000 10.75 0.00 0.00 1.94
2227 2353 5.424252 ACTGAACCAAATATAACTCCGAGGA 59.576 40.000 0.00 0.00 0.00 3.71
2231 2357 6.027749 GCAAACTGAACCAAATATAACTCCG 58.972 40.000 0.00 0.00 0.00 4.63
2312 2439 4.883585 TGCATAGTCCATGATCAAAGAACC 59.116 41.667 0.00 0.00 36.69 3.62
2350 2478 9.590828 TTCCACATACAAATCATATGATCCATT 57.409 29.630 18.44 6.96 34.65 3.16
2376 2504 0.750546 TAGGCCGCTCACTACGTCAT 60.751 55.000 0.00 0.00 0.00 3.06
2380 2508 2.026301 GCTAGGCCGCTCACTACG 59.974 66.667 0.00 0.00 0.00 3.51
2384 2512 2.202810 GACAGCTAGGCCGCTCAC 60.203 66.667 1.63 0.00 38.41 3.51
2385 2513 2.679996 TGACAGCTAGGCCGCTCA 60.680 61.111 1.63 0.00 38.41 4.26
2399 2529 7.709269 TGTCAACACTAGAACATTTAGTGAC 57.291 36.000 16.70 7.34 46.98 3.67
2405 2535 9.337396 TGAGTTTATGTCAACACTAGAACATTT 57.663 29.630 0.00 0.00 0.00 2.32
2413 2543 7.896811 ACAGAGATGAGTTTATGTCAACACTA 58.103 34.615 0.00 0.00 0.00 2.74
2415 2545 7.426929 AACAGAGATGAGTTTATGTCAACAC 57.573 36.000 0.00 0.00 0.00 3.32
2422 2552 8.752766 AATGCAAAAACAGAGATGAGTTTATG 57.247 30.769 0.00 0.00 36.98 1.90
2424 2554 8.845227 TGTAATGCAAAAACAGAGATGAGTTTA 58.155 29.630 0.00 0.00 36.98 2.01
2457 2587 9.561069 ACTGAAATGTAGAACACTTGAACTATT 57.439 29.630 0.00 0.00 0.00 1.73
2464 2594 6.038161 TCACCAACTGAAATGTAGAACACTTG 59.962 38.462 0.00 0.00 0.00 3.16
2469 2599 4.084013 CGGTCACCAACTGAAATGTAGAAC 60.084 45.833 0.00 0.00 36.22 3.01
2491 2621 5.536554 ACAGCAGTTTATCACAAGAATCG 57.463 39.130 0.00 0.00 0.00 3.34
2588 2719 2.024846 AGCAGTTCCAGTAGCCTCTCTA 60.025 50.000 0.00 0.00 0.00 2.43
2621 2752 3.425659 GACAGGATCTCCAAAGCCTTTT 58.574 45.455 0.00 0.00 38.89 2.27
2642 2773 1.760192 CCATTCCTTCAGCCTTCTGG 58.240 55.000 0.00 0.00 40.69 3.86
2729 2860 5.182001 AGACCACAAACAATGATCAGTAAGC 59.818 40.000 0.09 0.00 0.00 3.09
2730 2861 6.348786 CCAGACCACAAACAATGATCAGTAAG 60.349 42.308 0.09 0.00 0.00 2.34
2731 2862 5.473162 CCAGACCACAAACAATGATCAGTAA 59.527 40.000 0.09 0.00 0.00 2.24
2732 2863 5.003160 CCAGACCACAAACAATGATCAGTA 58.997 41.667 0.09 0.00 0.00 2.74
2733 2864 3.822735 CCAGACCACAAACAATGATCAGT 59.177 43.478 0.09 0.00 0.00 3.41
2734 2865 4.074259 TCCAGACCACAAACAATGATCAG 58.926 43.478 0.09 0.00 0.00 2.90
2735 2866 3.820467 GTCCAGACCACAAACAATGATCA 59.180 43.478 0.00 0.00 0.00 2.92
2736 2867 4.074970 AGTCCAGACCACAAACAATGATC 58.925 43.478 0.00 0.00 0.00 2.92
2737 2868 4.104383 AGTCCAGACCACAAACAATGAT 57.896 40.909 0.00 0.00 0.00 2.45
2738 2869 3.576078 AGTCCAGACCACAAACAATGA 57.424 42.857 0.00 0.00 0.00 2.57
2739 2870 3.885297 AGAAGTCCAGACCACAAACAATG 59.115 43.478 0.00 0.00 0.00 2.82
2740 2871 3.885297 CAGAAGTCCAGACCACAAACAAT 59.115 43.478 0.00 0.00 0.00 2.71
2741 2872 3.278574 CAGAAGTCCAGACCACAAACAA 58.721 45.455 0.00 0.00 0.00 2.83
2742 2873 2.917933 CAGAAGTCCAGACCACAAACA 58.082 47.619 0.00 0.00 0.00 2.83
2783 2914 2.673833 CCTACTGAACGACAAGTGTCC 58.326 52.381 5.88 0.00 41.86 4.02
2831 2962 5.238650 ACTTAGTTTTATATGCCGGCACATC 59.761 40.000 35.50 14.23 0.00 3.06
2863 2994 8.440833 GCTTACATTAGACAACTAAACGACATT 58.559 33.333 0.00 0.00 41.15 2.71
2864 2995 7.817962 AGCTTACATTAGACAACTAAACGACAT 59.182 33.333 0.00 0.00 41.15 3.06
2866 2997 7.578169 AGCTTACATTAGACAACTAAACGAC 57.422 36.000 0.00 0.00 41.15 4.34
2875 3006 6.653320 CCACCTTTGTAGCTTACATTAGACAA 59.347 38.462 0.00 0.00 38.68 3.18
2878 3009 6.368779 ACCACCTTTGTAGCTTACATTAGA 57.631 37.500 0.00 0.00 38.68 2.10
2893 3024 4.281688 CCATTCAGAACATCAACCACCTTT 59.718 41.667 0.00 0.00 0.00 3.11
2904 3035 7.557358 TCATTATAAGCACACCATTCAGAACAT 59.443 33.333 0.00 0.00 0.00 2.71
2907 3038 6.038603 GCTCATTATAAGCACACCATTCAGAA 59.961 38.462 0.00 0.00 39.61 3.02
2918 3049 3.629398 ACAAGCTGGCTCATTATAAGCAC 59.371 43.478 0.00 0.00 41.66 4.40
2926 3057 3.428532 AGATGAAACAAGCTGGCTCATT 58.571 40.909 7.53 0.00 0.00 2.57
2931 3063 5.376854 TTTAGAAGATGAAACAAGCTGGC 57.623 39.130 0.00 0.00 0.00 4.85
2967 3099 7.071069 AGAAATCAAGCTTCCCTGAAAATTT 57.929 32.000 0.00 0.00 0.00 1.82
3022 3154 5.450965 GCAACCTGCTAGCACATAAATGAAT 60.451 40.000 14.93 0.00 40.96 2.57
3049 3181 3.838244 TGCATACTGTATCCCCTCAAC 57.162 47.619 0.00 0.00 0.00 3.18
3063 3195 4.107622 GGAGCAATGAACAACATGCATAC 58.892 43.478 0.00 0.00 39.39 2.39
3094 3226 9.747898 ACAATGTGGGATCAAATAGTTACTTAA 57.252 29.630 0.00 0.00 0.00 1.85
3098 3230 6.828785 AGGACAATGTGGGATCAAATAGTTAC 59.171 38.462 0.00 0.00 0.00 2.50
3129 3261 8.313292 ACAGCAAATACAACATATGGTTTCAAT 58.687 29.630 7.80 0.00 37.72 2.57
3130 3262 7.665690 ACAGCAAATACAACATATGGTTTCAA 58.334 30.769 7.80 0.00 37.72 2.69
3131 3263 7.040132 TGACAGCAAATACAACATATGGTTTCA 60.040 33.333 7.80 0.00 37.72 2.69
3132 3264 7.312154 TGACAGCAAATACAACATATGGTTTC 58.688 34.615 7.80 0.00 37.72 2.78
3133 3265 7.225784 TGACAGCAAATACAACATATGGTTT 57.774 32.000 7.80 0.00 37.72 3.27
3134 3266 6.127647 CCTGACAGCAAATACAACATATGGTT 60.128 38.462 7.80 0.00 41.47 3.67
3135 3267 5.357878 CCTGACAGCAAATACAACATATGGT 59.642 40.000 7.80 0.00 0.00 3.55
3136 3268 5.357878 ACCTGACAGCAAATACAACATATGG 59.642 40.000 7.80 0.00 0.00 2.74
3145 3277 4.275936 ACACTTTGACCTGACAGCAAATAC 59.724 41.667 8.21 0.00 31.85 1.89
3152 3284 5.277538 GCTTTAGAACACTTTGACCTGACAG 60.278 44.000 0.00 0.00 0.00 3.51
3187 3319 8.044908 GTCACCAGTCCTTAATATAAGGTCAAA 58.955 37.037 14.18 0.00 38.55 2.69
3239 3371 9.118300 CTTCTTGCTATATCATGAAAGGACTTT 57.882 33.333 0.00 0.00 32.23 2.66
3242 3374 6.072783 GGCTTCTTGCTATATCATGAAAGGAC 60.073 42.308 0.00 0.00 42.39 3.85
3245 3377 6.872628 TGGCTTCTTGCTATATCATGAAAG 57.127 37.500 0.00 0.00 42.39 2.62
3277 3409 6.044520 AGACTATACCCTAGTCAGACAGCATA 59.955 42.308 13.28 0.00 44.66 3.14
3282 3414 7.870027 AGTTTAGACTATACCCTAGTCAGACA 58.130 38.462 13.28 0.00 44.66 3.41
3293 3425 9.490379 CATTCCAATGGTAGTTTAGACTATACC 57.510 37.037 0.00 4.43 40.33 2.73
3308 3440 8.189119 ACTGTTTACAATAACATTCCAATGGT 57.811 30.769 0.00 0.00 40.70 3.55
3309 3441 9.487790 AAACTGTTTACAATAACATTCCAATGG 57.512 29.630 3.51 0.00 40.70 3.16
3312 3444 9.877178 AACAAACTGTTTACAATAACATTCCAA 57.123 25.926 5.31 0.00 37.26 3.53
3313 3445 9.522804 GAACAAACTGTTTACAATAACATTCCA 57.477 29.630 5.31 0.00 41.28 3.53
3314 3446 9.744468 AGAACAAACTGTTTACAATAACATTCC 57.256 29.630 5.31 0.00 41.28 3.01
3318 3450 9.562583 GACAAGAACAAACTGTTTACAATAACA 57.437 29.630 5.31 0.00 41.28 2.41
3319 3451 9.562583 TGACAAGAACAAACTGTTTACAATAAC 57.437 29.630 5.31 0.00 41.28 1.89
3321 3453 9.944663 GATGACAAGAACAAACTGTTTACAATA 57.055 29.630 5.31 0.00 41.28 1.90
3322 3454 8.686334 AGATGACAAGAACAAACTGTTTACAAT 58.314 29.630 5.31 0.00 41.28 2.71
3323 3455 8.050778 AGATGACAAGAACAAACTGTTTACAA 57.949 30.769 5.31 0.00 41.28 2.41
3324 3456 7.624360 AGATGACAAGAACAAACTGTTTACA 57.376 32.000 5.31 0.00 41.28 2.41
3325 3457 9.997482 TTAAGATGACAAGAACAAACTGTTTAC 57.003 29.630 5.31 1.42 41.28 2.01
3326 3458 9.997482 GTTAAGATGACAAGAACAAACTGTTTA 57.003 29.630 5.31 0.00 41.28 2.01
3327 3459 7.973944 GGTTAAGATGACAAGAACAAACTGTTT 59.026 33.333 0.00 0.00 41.28 2.83
3328 3460 7.339466 AGGTTAAGATGACAAGAACAAACTGTT 59.661 33.333 0.00 0.00 44.37 3.16
3329 3461 6.828785 AGGTTAAGATGACAAGAACAAACTGT 59.171 34.615 0.00 0.00 0.00 3.55
3330 3462 7.264373 AGGTTAAGATGACAAGAACAAACTG 57.736 36.000 0.00 0.00 0.00 3.16
3333 3465 9.162764 GCTATAGGTTAAGATGACAAGAACAAA 57.837 33.333 1.04 0.00 0.00 2.83
3334 3466 8.540388 AGCTATAGGTTAAGATGACAAGAACAA 58.460 33.333 0.00 0.00 0.00 2.83
3335 3467 7.981789 CAGCTATAGGTTAAGATGACAAGAACA 59.018 37.037 0.55 0.00 30.72 3.18
3336 3468 7.042389 GCAGCTATAGGTTAAGATGACAAGAAC 60.042 40.741 0.55 0.00 30.72 3.01
3337 3469 6.986817 GCAGCTATAGGTTAAGATGACAAGAA 59.013 38.462 0.55 0.00 30.72 2.52
3338 3470 6.098266 TGCAGCTATAGGTTAAGATGACAAGA 59.902 38.462 0.55 0.00 30.72 3.02
3339 3471 6.283694 TGCAGCTATAGGTTAAGATGACAAG 58.716 40.000 0.55 0.00 30.72 3.16
3340 3472 6.233905 TGCAGCTATAGGTTAAGATGACAA 57.766 37.500 0.55 0.00 30.72 3.18
3358 3490 7.010091 ACAGTGTTAGTTAAAACATTTTGCAGC 59.990 33.333 0.00 0.00 41.18 5.25
3370 3502 7.729116 AGTAGCCTGTTACAGTGTTAGTTAAA 58.271 34.615 11.68 0.00 0.00 1.52
3378 3510 4.413760 TCCTTAGTAGCCTGTTACAGTGT 58.586 43.478 11.68 0.00 0.00 3.55
3386 3518 7.678598 TGCCTATATAAATCCTTAGTAGCCTGT 59.321 37.037 0.00 0.00 0.00 4.00
3387 3519 8.079211 TGCCTATATAAATCCTTAGTAGCCTG 57.921 38.462 0.00 0.00 0.00 4.85
3388 3520 8.862091 ATGCCTATATAAATCCTTAGTAGCCT 57.138 34.615 0.00 0.00 0.00 4.58
3406 3619 9.368416 TGAATCTACACTCTAAACTATGCCTAT 57.632 33.333 0.00 0.00 0.00 2.57
3472 3826 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3499 3853 9.983804 GACACAAAACAGCTTATAATAACTACC 57.016 33.333 0.00 0.00 0.00 3.18
3522 3876 1.538075 TGCAGTTCTACGACGATGACA 59.462 47.619 0.00 0.00 0.00 3.58
3528 3882 2.276540 CGAATTCTGCAGTTCTACGACG 59.723 50.000 14.67 6.56 0.00 5.12
3532 3886 2.346803 TGCCGAATTCTGCAGTTCTAC 58.653 47.619 19.18 6.45 32.39 2.59
3541 3895 6.128445 CCAGTATAATAGCTTGCCGAATTCTG 60.128 42.308 3.52 0.00 0.00 3.02
3548 3902 6.620733 GCAATAACCAGTATAATAGCTTGCCG 60.621 42.308 0.00 0.00 31.52 5.69
3553 3907 7.922382 AGATGGCAATAACCAGTATAATAGCT 58.078 34.615 0.00 0.00 44.71 3.32
3555 3909 9.725019 TGAAGATGGCAATAACCAGTATAATAG 57.275 33.333 0.00 0.00 44.71 1.73
3557 3916 8.995027 TTGAAGATGGCAATAACCAGTATAAT 57.005 30.769 0.00 0.00 44.71 1.28
3592 3956 1.401552 CCATGTACGTGCCCAATTCTG 59.598 52.381 9.72 0.00 0.00 3.02
3593 3957 1.004277 ACCATGTACGTGCCCAATTCT 59.996 47.619 9.72 0.00 0.00 2.40
3594 3958 1.400494 GACCATGTACGTGCCCAATTC 59.600 52.381 9.72 0.00 0.00 2.17
3595 3959 1.004277 AGACCATGTACGTGCCCAATT 59.996 47.619 9.72 0.00 0.00 2.32
3596 3960 0.618458 AGACCATGTACGTGCCCAAT 59.382 50.000 9.72 0.00 0.00 3.16
3597 3961 1.268066 TAGACCATGTACGTGCCCAA 58.732 50.000 9.72 0.00 0.00 4.12
3598 3962 1.066716 GTTAGACCATGTACGTGCCCA 60.067 52.381 9.72 0.00 0.00 5.36
3599 3963 1.066716 TGTTAGACCATGTACGTGCCC 60.067 52.381 9.72 3.48 0.00 5.36
3600 3964 2.373540 TGTTAGACCATGTACGTGCC 57.626 50.000 9.72 3.82 0.00 5.01
3601 3965 3.063452 CCAATGTTAGACCATGTACGTGC 59.937 47.826 9.72 0.00 0.00 5.34
3602 3966 4.250464 ACCAATGTTAGACCATGTACGTG 58.750 43.478 8.18 8.18 0.00 4.49
3603 3967 4.546829 ACCAATGTTAGACCATGTACGT 57.453 40.909 0.00 0.00 0.00 3.57
3604 3968 5.657474 AGTACCAATGTTAGACCATGTACG 58.343 41.667 0.00 0.00 33.11 3.67
3605 3969 6.047231 GGAGTACCAATGTTAGACCATGTAC 58.953 44.000 0.00 0.00 35.97 2.90
3606 3970 5.129815 GGGAGTACCAATGTTAGACCATGTA 59.870 44.000 0.00 0.00 39.85 2.29
3607 3971 4.080526 GGGAGTACCAATGTTAGACCATGT 60.081 45.833 0.00 0.00 39.85 3.21
3608 3972 4.164221 AGGGAGTACCAATGTTAGACCATG 59.836 45.833 0.00 0.00 43.89 3.66
3609 3973 4.371681 AGGGAGTACCAATGTTAGACCAT 58.628 43.478 0.00 0.00 43.89 3.55
3610 3974 3.773119 GAGGGAGTACCAATGTTAGACCA 59.227 47.826 0.00 0.00 43.89 4.02
3611 3975 4.031611 AGAGGGAGTACCAATGTTAGACC 58.968 47.826 0.00 0.00 43.89 3.85
3612 3976 6.786967 TTAGAGGGAGTACCAATGTTAGAC 57.213 41.667 0.00 0.00 43.89 2.59
3613 3977 7.186972 TCTTTAGAGGGAGTACCAATGTTAGA 58.813 38.462 0.00 0.00 43.89 2.10
3614 3978 7.419711 TCTTTAGAGGGAGTACCAATGTTAG 57.580 40.000 0.00 0.00 43.89 2.34
3615 3979 7.801893 TTCTTTAGAGGGAGTACCAATGTTA 57.198 36.000 0.00 0.00 43.89 2.41
3616 3980 6.697641 TTCTTTAGAGGGAGTACCAATGTT 57.302 37.500 0.00 0.00 43.89 2.71
3617 3981 6.697641 TTTCTTTAGAGGGAGTACCAATGT 57.302 37.500 0.00 0.00 43.89 2.71
3621 3985 9.947189 TCTTATATTTCTTTAGAGGGAGTACCA 57.053 33.333 0.00 0.00 43.89 3.25
3623 3987 9.917129 GCTCTTATATTTCTTTAGAGGGAGTAC 57.083 37.037 0.00 0.00 34.36 2.73
3624 3988 9.656323 TGCTCTTATATTTCTTTAGAGGGAGTA 57.344 33.333 0.00 0.00 34.36 2.59
3625 3989 8.554490 TGCTCTTATATTTCTTTAGAGGGAGT 57.446 34.615 0.00 0.00 34.36 3.85
3678 4042 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
3679 4043 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
3680 4044 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
3681 4045 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
3687 4051 8.487028 CCAAGTACTCCCTCTGTAAAGAAATAT 58.513 37.037 0.00 0.00 0.00 1.28
3688 4052 7.456902 ACCAAGTACTCCCTCTGTAAAGAAATA 59.543 37.037 0.00 0.00 0.00 1.40
3689 4053 6.272558 ACCAAGTACTCCCTCTGTAAAGAAAT 59.727 38.462 0.00 0.00 0.00 2.17
3690 4054 5.605488 ACCAAGTACTCCCTCTGTAAAGAAA 59.395 40.000 0.00 0.00 0.00 2.52
3691 4055 5.152934 ACCAAGTACTCCCTCTGTAAAGAA 58.847 41.667 0.00 0.00 0.00 2.52
3692 4056 4.748701 ACCAAGTACTCCCTCTGTAAAGA 58.251 43.478 0.00 0.00 0.00 2.52
3693 4057 5.394333 GCTACCAAGTACTCCCTCTGTAAAG 60.394 48.000 0.00 0.00 0.00 1.85
3694 4058 4.465305 GCTACCAAGTACTCCCTCTGTAAA 59.535 45.833 0.00 0.00 0.00 2.01
3695 4059 4.021916 GCTACCAAGTACTCCCTCTGTAA 58.978 47.826 0.00 0.00 0.00 2.41
3696 4060 3.268856 AGCTACCAAGTACTCCCTCTGTA 59.731 47.826 0.00 0.00 0.00 2.74
3697 4061 2.043252 AGCTACCAAGTACTCCCTCTGT 59.957 50.000 0.00 0.00 0.00 3.41
3698 4062 2.428890 CAGCTACCAAGTACTCCCTCTG 59.571 54.545 0.00 0.00 0.00 3.35
3699 4063 2.043252 ACAGCTACCAAGTACTCCCTCT 59.957 50.000 0.00 0.00 0.00 3.69
3700 4064 2.427812 GACAGCTACCAAGTACTCCCTC 59.572 54.545 0.00 0.00 0.00 4.30
3701 4065 2.225293 TGACAGCTACCAAGTACTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
3702 4066 2.176889 TGACAGCTACCAAGTACTCCC 58.823 52.381 0.00 0.00 0.00 4.30
3703 4067 3.955650 TTGACAGCTACCAAGTACTCC 57.044 47.619 0.00 0.00 0.00 3.85
3704 4068 4.184629 CCATTGACAGCTACCAAGTACTC 58.815 47.826 0.00 0.00 0.00 2.59
3705 4069 4.207891 CCATTGACAGCTACCAAGTACT 57.792 45.455 6.20 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.