Multiple sequence alignment - TraesCS3A01G389400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G389400 chr3A 100.000 3476 0 0 1 3476 638057564 638061039 0.000000e+00 6420
1 TraesCS3A01G389400 chr3B 95.252 2822 88 22 685 3476 655863496 655860691 0.000000e+00 4427
2 TraesCS3A01G389400 chr3D 93.741 2844 110 28 681 3476 496748979 496746156 0.000000e+00 4204
3 TraesCS3A01G389400 chr3D 96.866 351 11 0 117 467 283239080 283239430 3.860000e-164 588
4 TraesCS3A01G389400 chr1D 97.183 355 10 0 115 469 218259060 218258706 4.960000e-168 601
5 TraesCS3A01G389400 chr1D 97.436 351 9 0 117 467 359693533 359693183 1.790000e-167 599
6 TraesCS3A01G389400 chr1D 96.620 355 11 1 113 467 7424178 7423825 3.860000e-164 588
7 TraesCS3A01G389400 chr2D 97.436 351 9 0 117 467 534852149 534851799 1.790000e-167 599
8 TraesCS3A01G389400 chr2D 96.866 351 11 0 117 467 40146381 40146031 3.860000e-164 588
9 TraesCS3A01G389400 chr7D 96.610 354 12 0 117 470 156079852 156079499 3.860000e-164 588
10 TraesCS3A01G389400 chr7D 96.866 351 11 0 117 467 262758548 262758898 3.860000e-164 588
11 TraesCS3A01G389400 chr7D 95.122 369 11 3 111 473 535899494 535899861 3.010000e-160 575


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G389400 chr3A 638057564 638061039 3475 False 6420 6420 100.000 1 3476 1 chr3A.!!$F1 3475
1 TraesCS3A01G389400 chr3B 655860691 655863496 2805 True 4427 4427 95.252 685 3476 1 chr3B.!!$R1 2791
2 TraesCS3A01G389400 chr3D 496746156 496748979 2823 True 4204 4204 93.741 681 3476 1 chr3D.!!$R1 2795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 476 0.033642 GGCCAGGTATAGTTCGAGCC 59.966 60.0 0.0 0.0 0.0 4.70 F
476 477 0.033642 GCCAGGTATAGTTCGAGCCC 59.966 60.0 0.0 0.0 0.0 5.19 F
550 551 0.175989 GTCCCACCGCAAACCAAAAA 59.824 50.0 0.0 0.0 0.0 1.94 F
1251 1285 1.043116 TCAGGCGGGTGATCGATTCT 61.043 55.0 0.0 0.0 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1438 0.683973 CATCCTTCTCCCCATCTCCG 59.316 60.000 0.00 0.00 0.00 4.63 R
1428 1462 1.528542 CGTCTCCGGAGCCATCCTA 60.529 63.158 27.39 4.41 44.22 2.94 R
1660 1694 1.557269 ATGGGCTCCGCTGAGAGTTT 61.557 55.000 9.60 0.00 41.42 2.66 R
3172 3219 0.770499 TTGAGTCCAGCAATGGGTGA 59.230 50.000 0.00 0.00 45.29 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.645838 TTTGCTTTGCCACTCTCTCT 57.354 45.000 0.00 0.00 0.00 3.10
20 21 2.645838 TTGCTTTGCCACTCTCTCTT 57.354 45.000 0.00 0.00 0.00 2.85
21 22 2.645838 TGCTTTGCCACTCTCTCTTT 57.354 45.000 0.00 0.00 0.00 2.52
22 23 2.936202 TGCTTTGCCACTCTCTCTTTT 58.064 42.857 0.00 0.00 0.00 2.27
23 24 2.880890 TGCTTTGCCACTCTCTCTTTTC 59.119 45.455 0.00 0.00 0.00 2.29
24 25 3.145286 GCTTTGCCACTCTCTCTTTTCT 58.855 45.455 0.00 0.00 0.00 2.52
25 26 3.567585 GCTTTGCCACTCTCTCTTTTCTT 59.432 43.478 0.00 0.00 0.00 2.52
26 27 4.037327 GCTTTGCCACTCTCTCTTTTCTTT 59.963 41.667 0.00 0.00 0.00 2.52
27 28 5.239525 GCTTTGCCACTCTCTCTTTTCTTTA 59.760 40.000 0.00 0.00 0.00 1.85
28 29 6.238759 GCTTTGCCACTCTCTCTTTTCTTTAA 60.239 38.462 0.00 0.00 0.00 1.52
29 30 7.639113 TTTGCCACTCTCTCTTTTCTTTAAA 57.361 32.000 0.00 0.00 0.00 1.52
30 31 6.867662 TGCCACTCTCTCTTTTCTTTAAAG 57.132 37.500 9.04 9.04 43.82 1.85
31 32 5.765182 TGCCACTCTCTCTTTTCTTTAAAGG 59.235 40.000 15.13 0.00 42.88 3.11
32 33 5.335269 GCCACTCTCTCTTTTCTTTAAAGGC 60.335 44.000 15.13 2.76 42.88 4.35
33 34 5.182190 CCACTCTCTCTTTTCTTTAAAGGCC 59.818 44.000 15.13 0.00 42.88 5.19
34 35 5.182190 CACTCTCTCTTTTCTTTAAAGGCCC 59.818 44.000 15.13 0.00 42.88 5.80
35 36 4.663334 TCTCTCTTTTCTTTAAAGGCCCC 58.337 43.478 15.13 0.00 42.88 5.80
36 37 3.418047 TCTCTTTTCTTTAAAGGCCCCG 58.582 45.455 15.13 1.58 42.88 5.73
37 38 1.890489 TCTTTTCTTTAAAGGCCCCGC 59.110 47.619 15.13 0.00 42.88 6.13
38 39 1.893137 CTTTTCTTTAAAGGCCCCGCT 59.107 47.619 15.13 0.00 39.68 5.52
39 40 1.253100 TTTCTTTAAAGGCCCCGCTG 58.747 50.000 15.13 0.00 0.00 5.18
40 41 1.248101 TTCTTTAAAGGCCCCGCTGC 61.248 55.000 15.13 0.00 0.00 5.25
41 42 1.678970 CTTTAAAGGCCCCGCTGCT 60.679 57.895 7.37 0.00 0.00 4.24
42 43 0.393808 CTTTAAAGGCCCCGCTGCTA 60.394 55.000 7.37 0.00 0.00 3.49
43 44 0.038455 TTTAAAGGCCCCGCTGCTAA 59.962 50.000 0.00 0.00 0.00 3.09
44 45 0.038455 TTAAAGGCCCCGCTGCTAAA 59.962 50.000 0.00 0.00 0.00 1.85
45 46 0.678684 TAAAGGCCCCGCTGCTAAAC 60.679 55.000 0.00 0.00 0.00 2.01
46 47 2.426305 AAAGGCCCCGCTGCTAAACT 62.426 55.000 0.00 0.00 0.00 2.66
47 48 2.361230 GGCCCCGCTGCTAAACTT 60.361 61.111 0.00 0.00 0.00 2.66
48 49 2.700773 GGCCCCGCTGCTAAACTTG 61.701 63.158 0.00 0.00 0.00 3.16
49 50 2.877691 CCCCGCTGCTAAACTTGC 59.122 61.111 0.00 0.00 0.00 4.01
50 51 1.971167 CCCCGCTGCTAAACTTGCA 60.971 57.895 0.00 0.00 38.81 4.08
51 52 1.210155 CCCGCTGCTAAACTTGCAC 59.790 57.895 0.00 0.00 36.37 4.57
52 53 1.210155 CCGCTGCTAAACTTGCACC 59.790 57.895 0.00 0.00 36.37 5.01
53 54 1.154413 CGCTGCTAAACTTGCACCG 60.154 57.895 0.00 0.00 36.37 4.94
54 55 1.565156 CGCTGCTAAACTTGCACCGA 61.565 55.000 0.00 0.00 40.61 4.69
55 56 0.591170 GCTGCTAAACTTGCACCGAA 59.409 50.000 0.00 0.00 36.37 4.30
56 57 1.400242 GCTGCTAAACTTGCACCGAAG 60.400 52.381 0.00 0.00 36.37 3.79
68 69 4.335647 CCGAAGGCAGGCTGGTGT 62.336 66.667 17.64 0.00 46.14 4.16
69 70 2.662596 CGAAGGCAGGCTGGTGTA 59.337 61.111 17.64 0.00 0.00 2.90
70 71 1.448540 CGAAGGCAGGCTGGTGTAG 60.449 63.158 17.64 0.00 0.00 2.74
71 72 1.679898 GAAGGCAGGCTGGTGTAGT 59.320 57.895 17.64 0.00 0.00 2.73
72 73 0.674895 GAAGGCAGGCTGGTGTAGTG 60.675 60.000 17.64 0.00 0.00 2.74
73 74 2.045926 GGCAGGCTGGTGTAGTGG 60.046 66.667 17.64 0.00 0.00 4.00
74 75 2.747855 GCAGGCTGGTGTAGTGGC 60.748 66.667 17.64 0.00 0.00 5.01
75 76 3.072476 CAGGCTGGTGTAGTGGCT 58.928 61.111 6.61 0.00 37.06 4.75
76 77 1.899437 GCAGGCTGGTGTAGTGGCTA 61.899 60.000 17.64 0.00 35.16 3.93
77 78 0.176680 CAGGCTGGTGTAGTGGCTAG 59.823 60.000 6.61 0.00 35.16 3.42
78 79 0.978146 AGGCTGGTGTAGTGGCTAGG 60.978 60.000 0.00 0.00 34.81 3.02
79 80 1.265454 GGCTGGTGTAGTGGCTAGGT 61.265 60.000 0.00 0.00 0.00 3.08
80 81 1.481871 GCTGGTGTAGTGGCTAGGTA 58.518 55.000 0.00 0.00 0.00 3.08
81 82 1.136500 GCTGGTGTAGTGGCTAGGTAC 59.864 57.143 0.00 0.00 0.00 3.34
82 83 1.404391 CTGGTGTAGTGGCTAGGTACG 59.596 57.143 0.00 0.00 0.00 3.67
83 84 0.101939 GGTGTAGTGGCTAGGTACGC 59.898 60.000 0.00 0.00 0.00 4.42
84 85 0.248377 GTGTAGTGGCTAGGTACGCG 60.248 60.000 3.53 3.53 0.00 6.01
85 86 1.358046 GTAGTGGCTAGGTACGCGG 59.642 63.158 12.47 0.00 0.00 6.46
86 87 1.825191 TAGTGGCTAGGTACGCGGG 60.825 63.158 12.47 0.00 0.00 6.13
87 88 2.556840 TAGTGGCTAGGTACGCGGGT 62.557 60.000 12.47 10.91 0.00 5.28
88 89 3.454573 TGGCTAGGTACGCGGGTG 61.455 66.667 16.34 0.00 0.00 4.61
89 90 3.455469 GGCTAGGTACGCGGGTGT 61.455 66.667 16.34 2.28 0.00 4.16
90 91 2.120909 GGCTAGGTACGCGGGTGTA 61.121 63.158 16.34 3.39 0.00 2.90
91 92 1.358046 GCTAGGTACGCGGGTGTAG 59.642 63.158 16.34 13.46 0.00 2.74
92 93 1.358046 CTAGGTACGCGGGTGTAGC 59.642 63.158 16.34 12.31 41.85 3.58
93 94 1.378382 TAGGTACGCGGGTGTAGCA 60.378 57.895 16.34 6.89 43.49 3.49
94 95 1.378882 TAGGTACGCGGGTGTAGCAG 61.379 60.000 16.34 0.00 43.49 4.24
95 96 2.884207 GTACGCGGGTGTAGCAGC 60.884 66.667 16.34 0.00 34.19 5.25
96 97 3.375239 TACGCGGGTGTAGCAGCA 61.375 61.111 16.34 0.00 33.07 4.41
97 98 3.350909 TACGCGGGTGTAGCAGCAG 62.351 63.158 16.34 0.00 33.07 4.24
114 115 3.257933 GCTGGTTGCTGGTTCGAG 58.742 61.111 0.00 0.00 38.95 4.04
115 116 2.970974 GCTGGTTGCTGGTTCGAGC 61.971 63.158 0.04 0.04 39.62 5.03
116 117 1.302033 CTGGTTGCTGGTTCGAGCT 60.302 57.895 8.13 0.00 39.90 4.09
117 118 0.037326 CTGGTTGCTGGTTCGAGCTA 60.037 55.000 8.13 0.00 39.90 3.32
118 119 0.037326 TGGTTGCTGGTTCGAGCTAG 60.037 55.000 8.31 8.31 39.90 3.42
119 120 0.037232 GGTTGCTGGTTCGAGCTAGT 60.037 55.000 13.84 0.00 39.90 2.57
120 121 1.351153 GTTGCTGGTTCGAGCTAGTC 58.649 55.000 13.84 7.20 39.90 2.59
121 122 0.246635 TTGCTGGTTCGAGCTAGTCC 59.753 55.000 13.84 0.00 39.90 3.85
122 123 0.612174 TGCTGGTTCGAGCTAGTCCT 60.612 55.000 13.84 0.00 39.90 3.85
123 124 0.179124 GCTGGTTCGAGCTAGTCCTG 60.179 60.000 13.84 10.69 35.95 3.86
124 125 0.457851 CTGGTTCGAGCTAGTCCTGG 59.542 60.000 4.42 0.00 0.00 4.45
125 126 1.142097 GGTTCGAGCTAGTCCTGGC 59.858 63.158 0.00 0.00 37.33 4.85
126 127 1.142097 GTTCGAGCTAGTCCTGGCC 59.858 63.158 0.00 0.00 37.85 5.36
127 128 1.304962 TTCGAGCTAGTCCTGGCCA 60.305 57.895 4.71 4.71 37.85 5.36
128 129 0.687757 TTCGAGCTAGTCCTGGCCAT 60.688 55.000 5.51 0.00 37.85 4.40
129 130 1.109920 TCGAGCTAGTCCTGGCCATC 61.110 60.000 5.51 0.00 37.85 3.51
130 131 1.112315 CGAGCTAGTCCTGGCCATCT 61.112 60.000 5.51 8.22 37.85 2.90
131 132 1.127343 GAGCTAGTCCTGGCCATCTT 58.873 55.000 5.51 0.00 37.85 2.40
132 133 2.320781 GAGCTAGTCCTGGCCATCTTA 58.679 52.381 5.51 0.00 37.85 2.10
133 134 2.298729 GAGCTAGTCCTGGCCATCTTAG 59.701 54.545 5.51 7.59 37.85 2.18
134 135 1.346068 GCTAGTCCTGGCCATCTTAGG 59.654 57.143 5.51 3.08 0.00 2.69
174 175 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
175 176 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
176 177 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
177 178 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
183 184 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
184 185 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
185 186 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
228 229 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
229 230 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
230 231 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
231 232 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
232 233 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
233 234 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
234 235 1.527433 GGCCTGAGTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
235 236 1.527433 GCCTGAGTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
236 237 0.178992 CCTGAGTTTTGAGCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
237 238 1.242076 CTGAGTTTTGAGCCCACCAG 58.758 55.000 0.00 0.00 0.00 4.00
238 239 0.823356 TGAGTTTTGAGCCCACCAGC 60.823 55.000 0.00 0.00 0.00 4.85
239 240 0.823356 GAGTTTTGAGCCCACCAGCA 60.823 55.000 0.00 0.00 34.23 4.41
240 241 0.825010 AGTTTTGAGCCCACCAGCAG 60.825 55.000 0.00 0.00 34.23 4.24
241 242 1.531365 TTTTGAGCCCACCAGCAGG 60.531 57.895 0.00 0.00 42.21 4.85
261 262 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
262 263 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
267 268 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
268 269 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
269 270 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
270 271 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
271 272 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
272 273 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
285 286 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
286 287 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
287 288 6.040842 GGCATATTGGCATTTTAAGGAAGAGA 59.959 38.462 0.00 0.00 43.14 3.10
288 289 6.920210 GCATATTGGCATTTTAAGGAAGAGAC 59.080 38.462 0.00 0.00 0.00 3.36
289 290 5.921962 ATTGGCATTTTAAGGAAGAGACC 57.078 39.130 0.00 0.00 0.00 3.85
290 291 3.697166 TGGCATTTTAAGGAAGAGACCC 58.303 45.455 0.00 0.00 0.00 4.46
291 292 2.683362 GGCATTTTAAGGAAGAGACCCG 59.317 50.000 0.00 0.00 0.00 5.28
292 293 2.683362 GCATTTTAAGGAAGAGACCCGG 59.317 50.000 0.00 0.00 0.00 5.73
293 294 2.484742 TTTTAAGGAAGAGACCCGGC 57.515 50.000 0.00 0.00 0.00 6.13
294 295 0.616891 TTTAAGGAAGAGACCCGGCC 59.383 55.000 0.00 0.00 0.00 6.13
295 296 1.269703 TTAAGGAAGAGACCCGGCCC 61.270 60.000 0.00 0.00 0.00 5.80
296 297 2.465010 TAAGGAAGAGACCCGGCCCA 62.465 60.000 0.00 0.00 0.00 5.36
297 298 4.097361 GGAAGAGACCCGGCCCAC 62.097 72.222 0.00 0.00 0.00 4.61
298 299 4.452733 GAAGAGACCCGGCCCACG 62.453 72.222 0.00 0.00 43.80 4.94
325 326 3.596362 CCCTAAGGGCTTTTCAGGG 57.404 57.895 3.08 3.08 40.10 4.45
326 327 0.684479 CCCTAAGGGCTTTTCAGGGC 60.684 60.000 4.44 0.00 39.62 5.19
327 328 0.332972 CCTAAGGGCTTTTCAGGGCT 59.667 55.000 0.00 0.00 0.00 5.19
328 329 1.272704 CCTAAGGGCTTTTCAGGGCTT 60.273 52.381 0.00 0.00 0.00 4.35
329 330 2.529632 CTAAGGGCTTTTCAGGGCTTT 58.470 47.619 0.00 0.00 33.62 3.51
330 331 1.806496 AAGGGCTTTTCAGGGCTTTT 58.194 45.000 0.00 0.00 0.00 2.27
331 332 1.806496 AGGGCTTTTCAGGGCTTTTT 58.194 45.000 0.00 0.00 0.00 1.94
332 333 2.970987 AGGGCTTTTCAGGGCTTTTTA 58.029 42.857 0.00 0.00 0.00 1.52
333 334 2.632996 AGGGCTTTTCAGGGCTTTTTAC 59.367 45.455 0.00 0.00 0.00 2.01
334 335 2.289444 GGGCTTTTCAGGGCTTTTTACC 60.289 50.000 0.00 0.00 0.00 2.85
335 336 2.367241 GGCTTTTCAGGGCTTTTTACCA 59.633 45.455 0.00 0.00 0.00 3.25
336 337 3.554960 GGCTTTTCAGGGCTTTTTACCAG 60.555 47.826 0.00 0.00 0.00 4.00
337 338 3.320826 GCTTTTCAGGGCTTTTTACCAGA 59.679 43.478 0.00 0.00 0.00 3.86
338 339 4.021104 GCTTTTCAGGGCTTTTTACCAGAT 60.021 41.667 0.00 0.00 0.00 2.90
339 340 5.467035 TTTTCAGGGCTTTTTACCAGATG 57.533 39.130 0.00 0.00 0.00 2.90
340 341 3.085952 TCAGGGCTTTTTACCAGATGG 57.914 47.619 0.00 0.00 42.17 3.51
341 342 2.647299 TCAGGGCTTTTTACCAGATGGA 59.353 45.455 5.72 0.00 38.94 3.41
342 343 2.755103 CAGGGCTTTTTACCAGATGGAC 59.245 50.000 5.72 0.00 38.94 4.02
343 344 2.100197 GGGCTTTTTACCAGATGGACC 58.900 52.381 5.72 0.00 38.94 4.46
344 345 1.743394 GGCTTTTTACCAGATGGACCG 59.257 52.381 5.72 0.00 38.94 4.79
345 346 1.743394 GCTTTTTACCAGATGGACCGG 59.257 52.381 5.72 0.00 38.94 5.28
346 347 2.365582 CTTTTTACCAGATGGACCGGG 58.634 52.381 6.32 0.00 38.94 5.73
347 348 0.034863 TTTTACCAGATGGACCGGGC 60.035 55.000 6.32 0.21 38.94 6.13
348 349 0.912487 TTTACCAGATGGACCGGGCT 60.912 55.000 7.57 0.00 38.94 5.19
349 350 0.912487 TTACCAGATGGACCGGGCTT 60.912 55.000 7.57 0.00 38.94 4.35
350 351 1.622607 TACCAGATGGACCGGGCTTG 61.623 60.000 7.57 0.37 38.94 4.01
351 352 2.124570 CAGATGGACCGGGCTTGG 60.125 66.667 7.57 0.00 0.00 3.61
352 353 2.285368 AGATGGACCGGGCTTGGA 60.285 61.111 7.57 0.00 0.00 3.53
353 354 2.124695 GATGGACCGGGCTTGGAC 60.125 66.667 7.57 0.00 0.00 4.02
354 355 2.610859 ATGGACCGGGCTTGGACT 60.611 61.111 7.57 0.00 0.00 3.85
355 356 2.198304 GATGGACCGGGCTTGGACTT 62.198 60.000 7.57 0.00 0.00 3.01
356 357 0.912487 ATGGACCGGGCTTGGACTTA 60.912 55.000 7.57 0.00 0.00 2.24
357 358 1.128809 TGGACCGGGCTTGGACTTAA 61.129 55.000 7.57 0.00 0.00 1.85
358 359 0.037160 GGACCGGGCTTGGACTTAAA 59.963 55.000 7.57 0.00 0.00 1.52
359 360 1.546099 GGACCGGGCTTGGACTTAAAA 60.546 52.381 7.57 0.00 0.00 1.52
360 361 2.232399 GACCGGGCTTGGACTTAAAAA 58.768 47.619 6.32 0.00 0.00 1.94
361 362 2.228103 GACCGGGCTTGGACTTAAAAAG 59.772 50.000 6.32 0.00 0.00 2.27
362 363 2.235891 CCGGGCTTGGACTTAAAAAGT 58.764 47.619 0.00 0.00 46.38 2.66
363 364 3.181441 ACCGGGCTTGGACTTAAAAAGTA 60.181 43.478 6.32 0.00 43.03 2.24
364 365 3.439129 CCGGGCTTGGACTTAAAAAGTAG 59.561 47.826 0.00 0.00 43.03 2.57
365 366 3.439129 CGGGCTTGGACTTAAAAAGTAGG 59.561 47.826 0.00 0.00 43.03 3.18
366 367 3.192844 GGGCTTGGACTTAAAAAGTAGGC 59.807 47.826 6.22 6.22 43.03 3.93
367 368 3.192844 GGCTTGGACTTAAAAAGTAGGCC 59.807 47.826 0.00 0.00 43.03 5.19
368 369 3.192844 GCTTGGACTTAAAAAGTAGGCCC 59.807 47.826 0.00 0.00 43.03 5.80
369 370 3.062122 TGGACTTAAAAAGTAGGCCCG 57.938 47.619 0.00 0.00 43.03 6.13
370 371 2.638855 TGGACTTAAAAAGTAGGCCCGA 59.361 45.455 0.00 0.00 43.03 5.14
371 372 3.264964 TGGACTTAAAAAGTAGGCCCGAT 59.735 43.478 0.00 0.00 43.03 4.18
372 373 3.626217 GGACTTAAAAAGTAGGCCCGATG 59.374 47.826 0.00 0.00 43.03 3.84
373 374 3.617284 ACTTAAAAAGTAGGCCCGATGG 58.383 45.455 0.00 0.00 40.69 3.51
374 375 3.009805 ACTTAAAAAGTAGGCCCGATGGT 59.990 43.478 0.00 0.00 40.69 3.55
375 376 4.225717 ACTTAAAAAGTAGGCCCGATGGTA 59.774 41.667 0.00 0.00 40.69 3.25
376 377 3.277142 AAAAAGTAGGCCCGATGGTAG 57.723 47.619 0.00 0.00 0.00 3.18
377 378 1.129058 AAAGTAGGCCCGATGGTAGG 58.871 55.000 0.00 0.00 0.00 3.18
383 384 3.560251 CCCGATGGTAGGGCCTGG 61.560 72.222 18.53 7.41 42.77 4.45
384 385 3.560251 CCGATGGTAGGGCCTGGG 61.560 72.222 18.53 3.75 38.35 4.45
385 386 2.445845 CGATGGTAGGGCCTGGGA 60.446 66.667 18.53 0.00 38.35 4.37
386 387 2.511452 CGATGGTAGGGCCTGGGAG 61.511 68.421 18.53 0.00 38.35 4.30
387 388 2.039405 ATGGTAGGGCCTGGGAGG 60.039 66.667 18.53 0.00 38.80 4.30
388 389 3.739080 ATGGTAGGGCCTGGGAGGG 62.739 68.421 18.53 0.00 35.37 4.30
405 406 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
406 407 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
407 408 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
408 409 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
409 410 1.228552 TGGGCCTCAGTTTTCTGCC 60.229 57.895 4.53 0.00 46.59 4.85
410 411 2.335712 GGGCCTCAGTTTTCTGCCG 61.336 63.158 0.84 0.00 46.59 5.69
411 412 1.600916 GGCCTCAGTTTTCTGCCGT 60.601 57.895 0.00 0.00 46.59 5.68
412 413 1.576421 GCCTCAGTTTTCTGCCGTG 59.424 57.895 0.00 0.00 46.59 4.94
413 414 1.856265 GCCTCAGTTTTCTGCCGTGG 61.856 60.000 0.00 0.00 46.59 4.94
414 415 1.237285 CCTCAGTTTTCTGCCGTGGG 61.237 60.000 0.00 0.00 46.59 4.61
424 425 2.650778 GCCGTGGGCTTTTTCAGG 59.349 61.111 0.00 0.00 46.69 3.86
425 426 3.573772 GCCGTGGGCTTTTTCAGGC 62.574 63.158 0.00 0.00 46.69 4.85
430 431 4.069232 GGCTTTTTCAGGCCCGGC 62.069 66.667 0.00 0.00 42.55 6.13
468 469 2.155065 GCCCATGGCCAGGTATAGT 58.845 57.895 17.55 0.00 44.06 2.12
469 470 0.478507 GCCCATGGCCAGGTATAGTT 59.521 55.000 17.55 0.00 44.06 2.24
470 471 1.545651 GCCCATGGCCAGGTATAGTTC 60.546 57.143 17.55 0.00 44.06 3.01
471 472 1.270839 CCCATGGCCAGGTATAGTTCG 60.271 57.143 17.55 0.00 0.00 3.95
472 473 1.691976 CCATGGCCAGGTATAGTTCGA 59.308 52.381 17.55 0.00 0.00 3.71
473 474 2.289072 CCATGGCCAGGTATAGTTCGAG 60.289 54.545 17.55 0.00 0.00 4.04
474 475 0.750850 TGGCCAGGTATAGTTCGAGC 59.249 55.000 0.00 0.00 0.00 5.03
475 476 0.033642 GGCCAGGTATAGTTCGAGCC 59.966 60.000 0.00 0.00 0.00 4.70
476 477 0.033642 GCCAGGTATAGTTCGAGCCC 59.966 60.000 0.00 0.00 0.00 5.19
477 478 1.410004 CCAGGTATAGTTCGAGCCCA 58.590 55.000 0.00 0.00 0.00 5.36
478 479 1.068741 CCAGGTATAGTTCGAGCCCAC 59.931 57.143 0.00 0.00 0.00 4.61
479 480 1.068741 CAGGTATAGTTCGAGCCCACC 59.931 57.143 0.00 1.06 0.00 4.61
480 481 1.117150 GGTATAGTTCGAGCCCACCA 58.883 55.000 8.91 0.00 0.00 4.17
481 482 1.202498 GGTATAGTTCGAGCCCACCAC 60.202 57.143 8.91 0.00 0.00 4.16
482 483 1.117150 TATAGTTCGAGCCCACCACC 58.883 55.000 0.00 0.00 0.00 4.61
483 484 0.907704 ATAGTTCGAGCCCACCACCA 60.908 55.000 0.00 0.00 0.00 4.17
484 485 1.122632 TAGTTCGAGCCCACCACCAA 61.123 55.000 0.00 0.00 0.00 3.67
485 486 1.527380 GTTCGAGCCCACCACCAAA 60.527 57.895 0.00 0.00 0.00 3.28
486 487 1.104577 GTTCGAGCCCACCACCAAAA 61.105 55.000 0.00 0.00 0.00 2.44
487 488 0.821711 TTCGAGCCCACCACCAAAAG 60.822 55.000 0.00 0.00 0.00 2.27
488 489 2.919494 CGAGCCCACCACCAAAAGC 61.919 63.158 0.00 0.00 0.00 3.51
489 490 1.832167 GAGCCCACCACCAAAAGCA 60.832 57.895 0.00 0.00 0.00 3.91
490 491 1.382420 AGCCCACCACCAAAAGCAA 60.382 52.632 0.00 0.00 0.00 3.91
491 492 0.980231 AGCCCACCACCAAAAGCAAA 60.980 50.000 0.00 0.00 0.00 3.68
492 493 0.813610 GCCCACCACCAAAAGCAAAC 60.814 55.000 0.00 0.00 0.00 2.93
493 494 0.829990 CCCACCACCAAAAGCAAACT 59.170 50.000 0.00 0.00 0.00 2.66
494 495 2.035632 CCCACCACCAAAAGCAAACTA 58.964 47.619 0.00 0.00 0.00 2.24
495 496 2.035832 CCCACCACCAAAAGCAAACTAG 59.964 50.000 0.00 0.00 0.00 2.57
496 497 2.545742 CCACCACCAAAAGCAAACTAGC 60.546 50.000 0.00 0.00 0.00 3.42
498 499 2.623416 ACCACCAAAAGCAAACTAGCTC 59.377 45.455 0.00 0.00 45.89 4.09
499 500 2.350772 CCACCAAAAGCAAACTAGCTCG 60.351 50.000 0.00 0.00 45.89 5.03
500 501 2.548057 CACCAAAAGCAAACTAGCTCGA 59.452 45.455 0.00 0.00 45.89 4.04
501 502 2.808543 ACCAAAAGCAAACTAGCTCGAG 59.191 45.455 8.45 8.45 45.89 4.04
502 503 3.067106 CCAAAAGCAAACTAGCTCGAGA 58.933 45.455 18.75 0.00 45.89 4.04
503 504 3.124297 CCAAAAGCAAACTAGCTCGAGAG 59.876 47.826 18.75 8.22 45.89 3.20
504 505 2.663826 AAGCAAACTAGCTCGAGAGG 57.336 50.000 18.75 7.39 45.89 3.69
505 506 1.840737 AGCAAACTAGCTCGAGAGGA 58.159 50.000 18.75 0.00 42.18 3.71
506 507 2.383855 AGCAAACTAGCTCGAGAGGAT 58.616 47.619 18.75 0.54 42.18 3.24
507 508 2.763448 AGCAAACTAGCTCGAGAGGATT 59.237 45.455 18.75 1.33 42.18 3.01
508 509 3.196685 AGCAAACTAGCTCGAGAGGATTT 59.803 43.478 18.75 7.92 42.18 2.17
509 510 3.308323 GCAAACTAGCTCGAGAGGATTTG 59.692 47.826 18.75 19.47 0.00 2.32
510 511 4.499183 CAAACTAGCTCGAGAGGATTTGT 58.501 43.478 18.75 1.33 0.00 2.83
511 512 3.791973 ACTAGCTCGAGAGGATTTGTG 57.208 47.619 18.75 0.00 0.00 3.33
512 513 3.357203 ACTAGCTCGAGAGGATTTGTGA 58.643 45.455 18.75 0.00 0.00 3.58
513 514 2.663826 AGCTCGAGAGGATTTGTGAC 57.336 50.000 18.75 0.00 0.00 3.67
514 515 1.895798 AGCTCGAGAGGATTTGTGACA 59.104 47.619 18.75 0.00 0.00 3.58
515 516 2.094286 AGCTCGAGAGGATTTGTGACAG 60.094 50.000 18.75 0.00 0.00 3.51
516 517 2.094494 GCTCGAGAGGATTTGTGACAGA 60.094 50.000 18.75 0.00 0.00 3.41
517 518 3.506810 CTCGAGAGGATTTGTGACAGAC 58.493 50.000 6.58 0.00 0.00 3.51
518 519 2.095212 TCGAGAGGATTTGTGACAGACG 60.095 50.000 0.00 0.00 0.00 4.18
519 520 2.095212 CGAGAGGATTTGTGACAGACGA 60.095 50.000 0.00 0.00 0.00 4.20
520 521 3.611766 CGAGAGGATTTGTGACAGACGAA 60.612 47.826 0.00 0.00 32.16 3.85
521 522 4.307432 GAGAGGATTTGTGACAGACGAAA 58.693 43.478 0.00 0.00 31.33 3.46
522 523 4.703897 AGAGGATTTGTGACAGACGAAAA 58.296 39.130 0.00 0.00 31.33 2.29
523 524 5.123227 AGAGGATTTGTGACAGACGAAAAA 58.877 37.500 0.00 0.00 31.33 1.94
539 540 1.616159 AAAAACATCTGGTCCCACCG 58.384 50.000 0.00 0.00 42.58 4.94
540 541 0.893727 AAAACATCTGGTCCCACCGC 60.894 55.000 0.00 0.00 42.58 5.68
541 542 2.063015 AAACATCTGGTCCCACCGCA 62.063 55.000 0.00 0.00 42.58 5.69
542 543 2.063015 AACATCTGGTCCCACCGCAA 62.063 55.000 0.00 0.00 42.58 4.85
543 544 1.303236 CATCTGGTCCCACCGCAAA 60.303 57.895 0.00 0.00 42.58 3.68
544 545 1.303317 ATCTGGTCCCACCGCAAAC 60.303 57.895 0.00 0.00 42.58 2.93
545 546 2.764637 ATCTGGTCCCACCGCAAACC 62.765 60.000 0.00 0.00 42.58 3.27
546 547 3.783362 CTGGTCCCACCGCAAACCA 62.783 63.158 0.00 0.00 42.58 3.67
547 548 2.519780 GGTCCCACCGCAAACCAA 60.520 61.111 0.00 0.00 0.00 3.67
548 549 2.128507 GGTCCCACCGCAAACCAAA 61.129 57.895 0.00 0.00 0.00 3.28
549 550 1.677637 GGTCCCACCGCAAACCAAAA 61.678 55.000 0.00 0.00 0.00 2.44
550 551 0.175989 GTCCCACCGCAAACCAAAAA 59.824 50.000 0.00 0.00 0.00 1.94
572 573 7.423844 AAAAAGTGAAGAAACAATCCTTCCT 57.576 32.000 0.00 0.00 38.33 3.36
573 574 7.423844 AAAAGTGAAGAAACAATCCTTCCTT 57.576 32.000 0.00 0.00 38.33 3.36
574 575 7.423844 AAAGTGAAGAAACAATCCTTCCTTT 57.576 32.000 0.00 0.00 38.33 3.11
575 576 8.533569 AAAGTGAAGAAACAATCCTTCCTTTA 57.466 30.769 0.30 0.00 37.69 1.85
576 577 8.533569 AAGTGAAGAAACAATCCTTCCTTTAA 57.466 30.769 0.00 0.00 38.33 1.52
577 578 8.533569 AGTGAAGAAACAATCCTTCCTTTAAA 57.466 30.769 0.00 0.00 38.33 1.52
578 579 8.977412 AGTGAAGAAACAATCCTTCCTTTAAAA 58.023 29.630 0.00 0.00 38.33 1.52
579 580 9.764363 GTGAAGAAACAATCCTTCCTTTAAAAT 57.236 29.630 0.00 0.00 38.33 1.82
772 773 1.132554 TTACCGGCCCAGTTACCCAA 61.133 55.000 0.00 0.00 0.00 4.12
773 774 1.132554 TACCGGCCCAGTTACCCAAA 61.133 55.000 0.00 0.00 0.00 3.28
774 775 1.677633 CCGGCCCAGTTACCCAAAG 60.678 63.158 0.00 0.00 0.00 2.77
775 776 1.677633 CGGCCCAGTTACCCAAAGG 60.678 63.158 0.00 0.00 40.04 3.11
939 973 4.373116 CACGACCCACCACTCCCG 62.373 72.222 0.00 0.00 0.00 5.14
968 1002 2.158623 TCTGCTCCAGACCAAATTGTGT 60.159 45.455 0.00 0.00 35.39 3.72
1029 1063 3.381590 CGGTGATGAGGAGATCAGTAACA 59.618 47.826 0.00 0.00 42.53 2.41
1210 1244 2.514824 GGCTGGATCGCCTGAACC 60.515 66.667 4.50 0.00 46.63 3.62
1212 1246 1.817099 GCTGGATCGCCTGAACCTG 60.817 63.158 0.00 0.00 37.89 4.00
1248 1282 2.797278 GGTCAGGCGGGTGATCGAT 61.797 63.158 0.00 0.00 0.00 3.59
1251 1285 1.043116 TCAGGCGGGTGATCGATTCT 61.043 55.000 0.00 0.00 0.00 2.40
1272 1306 2.723273 TGTAGCGAGAGGAGTGATTCA 58.277 47.619 0.00 0.00 0.00 2.57
1296 1330 3.003173 AGGCTGCTGCGGTTCCTA 61.003 61.111 10.62 0.00 40.82 2.94
1311 1345 2.786495 CCTATCGTGGTGCCGCTCT 61.786 63.158 0.06 0.00 0.00 4.09
1319 1353 2.359967 GGTGCCGCTCTAAGGACCT 61.360 63.158 0.00 0.00 0.00 3.85
1398 1432 3.689649 GTGACCTCACCGCTATGAAAATT 59.310 43.478 0.00 0.00 40.85 1.82
1401 1435 2.684881 CCTCACCGCTATGAAAATTGCT 59.315 45.455 0.00 0.00 0.00 3.91
1404 1438 3.126858 TCACCGCTATGAAAATTGCTGTC 59.873 43.478 0.00 0.00 0.00 3.51
1428 1462 3.090532 GGGGAGAAGGATGGCCGT 61.091 66.667 0.00 0.00 39.96 5.68
1660 1694 0.399833 TGTGTGGCACCATAAGAGCA 59.600 50.000 16.26 0.00 32.73 4.26
1917 1951 1.371467 ATGGTGTCACCCCTGATTCA 58.629 50.000 19.57 0.00 37.50 2.57
2085 2119 7.597288 TTTGACCGATAGAATTATCAGAGGA 57.403 36.000 0.00 0.00 36.30 3.71
2147 2181 3.243367 CCGACAGCAAAGTTTTTCCATGA 60.243 43.478 0.00 0.00 0.00 3.07
2214 2248 8.239314 GCTCTTGACATGTTCAGAATTATGAAA 58.761 33.333 16.64 8.27 40.72 2.69
2228 2262 9.334693 CAGAATTATGAAAAGTTGTGAGTTAGC 57.665 33.333 0.00 0.00 0.00 3.09
2649 2686 7.771927 ATCAGTTGTCAAATCTTTCCTGAAT 57.228 32.000 4.48 0.00 32.10 2.57
2704 2741 4.710324 TCCGTTCCATGACTACTGTTTTT 58.290 39.130 0.00 0.00 0.00 1.94
2706 2743 6.289834 TCCGTTCCATGACTACTGTTTTTAA 58.710 36.000 0.00 0.00 0.00 1.52
2707 2744 6.938030 TCCGTTCCATGACTACTGTTTTTAAT 59.062 34.615 0.00 0.00 0.00 1.40
2834 2879 4.708177 CAGTATTGTATAGCAACTGCCCT 58.292 43.478 0.00 0.00 43.38 5.19
2835 2880 4.752101 CAGTATTGTATAGCAACTGCCCTC 59.248 45.833 0.00 0.00 43.38 4.30
2836 2881 2.710096 TTGTATAGCAACTGCCCTCC 57.290 50.000 0.00 0.00 43.38 4.30
2837 2882 1.879575 TGTATAGCAACTGCCCTCCT 58.120 50.000 0.00 0.00 43.38 3.69
2838 2883 2.196595 TGTATAGCAACTGCCCTCCTT 58.803 47.619 0.00 0.00 43.38 3.36
2839 2884 3.380393 TGTATAGCAACTGCCCTCCTTA 58.620 45.455 0.00 0.00 43.38 2.69
2840 2885 3.778075 TGTATAGCAACTGCCCTCCTTAA 59.222 43.478 0.00 0.00 43.38 1.85
3068 3115 7.980099 AGACTTATATAGTTTCAGTTTGTCCCG 59.020 37.037 0.00 0.00 37.17 5.14
3169 3216 4.733972 AGAGCGCTTTTCAAAGAAGTAC 57.266 40.909 13.26 0.00 38.28 2.73
3172 3219 2.032290 GCGCTTTTCAAAGAAGTACCGT 60.032 45.455 0.00 0.00 38.28 4.83
3258 3305 9.512435 CCTATGTGCTTTTCTTTTGAGATAATG 57.488 33.333 0.00 0.00 0.00 1.90
3280 3329 6.208840 TGTACCCCTTCCAGTTTTCTTTAT 57.791 37.500 0.00 0.00 0.00 1.40
3372 3429 5.762045 TGTTTATCAAGCAGCAAAGAGTTC 58.238 37.500 0.00 0.00 0.00 3.01
3394 3451 9.566432 AGTTCCATATGCTTTTAAGGATAGAAG 57.434 33.333 9.15 3.23 41.62 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.645838 AGAGAGAGTGGCAAAGCAAA 57.354 45.000 0.00 0.00 0.00 3.68
2 3 2.645838 AAAGAGAGAGTGGCAAAGCA 57.354 45.000 0.00 0.00 0.00 3.91
3 4 3.145286 AGAAAAGAGAGAGTGGCAAAGC 58.855 45.455 0.00 0.00 0.00 3.51
4 5 5.764487 AAAGAAAAGAGAGAGTGGCAAAG 57.236 39.130 0.00 0.00 0.00 2.77
5 6 7.201821 CCTTTAAAGAAAAGAGAGAGTGGCAAA 60.202 37.037 16.98 0.00 46.44 3.68
6 7 6.263168 CCTTTAAAGAAAAGAGAGAGTGGCAA 59.737 38.462 16.98 0.00 46.44 4.52
7 8 5.765182 CCTTTAAAGAAAAGAGAGAGTGGCA 59.235 40.000 16.98 0.00 46.44 4.92
8 9 5.335269 GCCTTTAAAGAAAAGAGAGAGTGGC 60.335 44.000 16.98 3.35 46.44 5.01
9 10 5.182190 GGCCTTTAAAGAAAAGAGAGAGTGG 59.818 44.000 16.98 0.00 46.44 4.00
10 11 5.182190 GGGCCTTTAAAGAAAAGAGAGAGTG 59.818 44.000 16.98 0.00 46.44 3.51
11 12 5.317808 GGGCCTTTAAAGAAAAGAGAGAGT 58.682 41.667 16.98 0.00 46.44 3.24
12 13 4.702612 GGGGCCTTTAAAGAAAAGAGAGAG 59.297 45.833 16.98 0.00 46.44 3.20
13 14 4.663334 GGGGCCTTTAAAGAAAAGAGAGA 58.337 43.478 16.98 0.00 46.44 3.10
14 15 3.440522 CGGGGCCTTTAAAGAAAAGAGAG 59.559 47.826 16.98 0.00 46.44 3.20
15 16 3.418047 CGGGGCCTTTAAAGAAAAGAGA 58.582 45.455 16.98 0.00 46.44 3.10
16 17 2.094700 GCGGGGCCTTTAAAGAAAAGAG 60.095 50.000 16.98 4.79 46.44 2.85
17 18 1.890489 GCGGGGCCTTTAAAGAAAAGA 59.110 47.619 16.98 0.00 46.44 2.52
18 19 1.893137 AGCGGGGCCTTTAAAGAAAAG 59.107 47.619 16.98 0.91 43.66 2.27
19 20 1.616374 CAGCGGGGCCTTTAAAGAAAA 59.384 47.619 16.98 0.00 0.00 2.29
20 21 1.253100 CAGCGGGGCCTTTAAAGAAA 58.747 50.000 16.98 0.00 0.00 2.52
21 22 1.248101 GCAGCGGGGCCTTTAAAGAA 61.248 55.000 16.98 0.00 0.00 2.52
22 23 1.677633 GCAGCGGGGCCTTTAAAGA 60.678 57.895 16.98 0.00 0.00 2.52
23 24 0.393808 TAGCAGCGGGGCCTTTAAAG 60.394 55.000 8.32 8.32 0.00 1.85
24 25 0.038455 TTAGCAGCGGGGCCTTTAAA 59.962 50.000 0.84 0.00 0.00 1.52
25 26 0.038455 TTTAGCAGCGGGGCCTTTAA 59.962 50.000 0.84 0.00 0.00 1.52
26 27 0.678684 GTTTAGCAGCGGGGCCTTTA 60.679 55.000 0.84 0.00 0.00 1.85
27 28 1.977009 GTTTAGCAGCGGGGCCTTT 60.977 57.895 0.84 0.00 0.00 3.11
28 29 2.361230 GTTTAGCAGCGGGGCCTT 60.361 61.111 0.84 0.00 0.00 4.35
29 30 2.907179 AAGTTTAGCAGCGGGGCCT 61.907 57.895 0.84 0.00 0.00 5.19
30 31 2.361230 AAGTTTAGCAGCGGGGCC 60.361 61.111 0.00 0.00 0.00 5.80
31 32 2.877691 CAAGTTTAGCAGCGGGGC 59.122 61.111 0.00 0.00 0.00 5.80
32 33 1.971167 TGCAAGTTTAGCAGCGGGG 60.971 57.895 0.00 0.00 37.02 5.73
33 34 1.210155 GTGCAAGTTTAGCAGCGGG 59.790 57.895 0.00 0.00 43.63 6.13
34 35 4.847255 GTGCAAGTTTAGCAGCGG 57.153 55.556 0.00 0.00 43.63 5.52
37 38 1.197721 CCTTCGGTGCAAGTTTAGCAG 59.802 52.381 0.00 0.00 43.63 4.24
38 39 1.234821 CCTTCGGTGCAAGTTTAGCA 58.765 50.000 0.00 0.00 40.19 3.49
39 40 0.109735 GCCTTCGGTGCAAGTTTAGC 60.110 55.000 0.00 0.00 0.00 3.09
40 41 1.197721 CTGCCTTCGGTGCAAGTTTAG 59.802 52.381 0.00 0.00 38.46 1.85
41 42 1.234821 CTGCCTTCGGTGCAAGTTTA 58.765 50.000 0.00 0.00 38.46 2.01
42 43 1.455383 CCTGCCTTCGGTGCAAGTTT 61.455 55.000 0.00 0.00 38.46 2.66
43 44 1.898574 CCTGCCTTCGGTGCAAGTT 60.899 57.895 0.00 0.00 38.46 2.66
44 45 2.281761 CCTGCCTTCGGTGCAAGT 60.282 61.111 0.00 0.00 38.46 3.16
45 46 3.741476 GCCTGCCTTCGGTGCAAG 61.741 66.667 0.00 0.00 38.46 4.01
46 47 4.269523 AGCCTGCCTTCGGTGCAA 62.270 61.111 0.00 0.00 38.46 4.08
49 50 4.335647 ACCAGCCTGCCTTCGGTG 62.336 66.667 0.00 0.00 0.00 4.94
50 51 4.335647 CACCAGCCTGCCTTCGGT 62.336 66.667 0.00 0.00 0.00 4.69
51 52 2.859273 CTACACCAGCCTGCCTTCGG 62.859 65.000 0.00 0.00 0.00 4.30
52 53 1.448540 CTACACCAGCCTGCCTTCG 60.449 63.158 0.00 0.00 0.00 3.79
53 54 0.674895 CACTACACCAGCCTGCCTTC 60.675 60.000 0.00 0.00 0.00 3.46
54 55 1.376466 CACTACACCAGCCTGCCTT 59.624 57.895 0.00 0.00 0.00 4.35
55 56 2.596851 CCACTACACCAGCCTGCCT 61.597 63.158 0.00 0.00 0.00 4.75
56 57 2.045926 CCACTACACCAGCCTGCC 60.046 66.667 0.00 0.00 0.00 4.85
57 58 1.899437 TAGCCACTACACCAGCCTGC 61.899 60.000 0.00 0.00 0.00 4.85
58 59 0.176680 CTAGCCACTACACCAGCCTG 59.823 60.000 0.00 0.00 0.00 4.85
59 60 0.978146 CCTAGCCACTACACCAGCCT 60.978 60.000 0.00 0.00 0.00 4.58
60 61 1.265454 ACCTAGCCACTACACCAGCC 61.265 60.000 0.00 0.00 0.00 4.85
61 62 1.136500 GTACCTAGCCACTACACCAGC 59.864 57.143 0.00 0.00 0.00 4.85
62 63 1.404391 CGTACCTAGCCACTACACCAG 59.596 57.143 0.00 0.00 0.00 4.00
63 64 1.466856 CGTACCTAGCCACTACACCA 58.533 55.000 0.00 0.00 0.00 4.17
64 65 0.101939 GCGTACCTAGCCACTACACC 59.898 60.000 0.00 0.00 0.00 4.16
65 66 0.248377 CGCGTACCTAGCCACTACAC 60.248 60.000 0.00 0.00 0.00 2.90
66 67 1.378882 CCGCGTACCTAGCCACTACA 61.379 60.000 4.92 0.00 0.00 2.74
67 68 1.358046 CCGCGTACCTAGCCACTAC 59.642 63.158 4.92 0.00 0.00 2.73
68 69 1.825191 CCCGCGTACCTAGCCACTA 60.825 63.158 4.92 0.00 0.00 2.74
69 70 3.145551 CCCGCGTACCTAGCCACT 61.146 66.667 4.92 0.00 0.00 4.00
70 71 3.455469 ACCCGCGTACCTAGCCAC 61.455 66.667 4.92 0.00 0.00 5.01
71 72 2.835317 TACACCCGCGTACCTAGCCA 62.835 60.000 4.92 0.00 0.00 4.75
72 73 2.068277 CTACACCCGCGTACCTAGCC 62.068 65.000 4.92 0.00 0.00 3.93
73 74 1.358046 CTACACCCGCGTACCTAGC 59.642 63.158 4.92 0.00 0.00 3.42
74 75 1.358046 GCTACACCCGCGTACCTAG 59.642 63.158 4.92 0.00 0.00 3.02
75 76 1.378382 TGCTACACCCGCGTACCTA 60.378 57.895 4.92 0.00 0.00 3.08
76 77 2.677524 TGCTACACCCGCGTACCT 60.678 61.111 4.92 0.00 0.00 3.08
77 78 2.202703 CTGCTACACCCGCGTACC 60.203 66.667 4.92 0.00 0.00 3.34
78 79 2.884207 GCTGCTACACCCGCGTAC 60.884 66.667 4.92 0.00 0.00 3.67
79 80 3.350909 CTGCTGCTACACCCGCGTA 62.351 63.158 4.92 0.00 0.00 4.42
80 81 4.742201 CTGCTGCTACACCCGCGT 62.742 66.667 4.92 0.00 0.00 6.01
97 98 2.970974 GCTCGAACCAGCAACCAGC 61.971 63.158 0.00 0.00 46.19 4.85
98 99 0.037326 TAGCTCGAACCAGCAACCAG 60.037 55.000 0.00 0.00 42.40 4.00
99 100 0.037326 CTAGCTCGAACCAGCAACCA 60.037 55.000 0.00 0.00 42.40 3.67
100 101 0.037232 ACTAGCTCGAACCAGCAACC 60.037 55.000 0.00 0.00 42.40 3.77
101 102 1.351153 GACTAGCTCGAACCAGCAAC 58.649 55.000 0.00 0.00 42.40 4.17
102 103 0.246635 GGACTAGCTCGAACCAGCAA 59.753 55.000 0.00 0.00 42.40 3.91
103 104 0.612174 AGGACTAGCTCGAACCAGCA 60.612 55.000 0.00 0.00 42.40 4.41
104 105 0.179124 CAGGACTAGCTCGAACCAGC 60.179 60.000 0.00 0.00 39.99 4.85
105 106 0.457851 CCAGGACTAGCTCGAACCAG 59.542 60.000 0.00 0.00 0.00 4.00
106 107 1.605058 GCCAGGACTAGCTCGAACCA 61.605 60.000 0.00 0.00 0.00 3.67
107 108 1.142097 GCCAGGACTAGCTCGAACC 59.858 63.158 0.00 0.00 0.00 3.62
108 109 1.142097 GGCCAGGACTAGCTCGAAC 59.858 63.158 0.00 0.00 0.00 3.95
109 110 0.687757 ATGGCCAGGACTAGCTCGAA 60.688 55.000 13.05 0.00 0.00 3.71
110 111 1.075970 ATGGCCAGGACTAGCTCGA 60.076 57.895 13.05 0.00 0.00 4.04
111 112 1.112315 AGATGGCCAGGACTAGCTCG 61.112 60.000 13.05 0.00 0.00 5.03
112 113 1.127343 AAGATGGCCAGGACTAGCTC 58.873 55.000 13.05 0.13 0.00 4.09
113 114 2.324541 CTAAGATGGCCAGGACTAGCT 58.675 52.381 13.05 0.00 0.00 3.32
114 115 1.346068 CCTAAGATGGCCAGGACTAGC 59.654 57.143 13.05 0.00 0.00 3.42
115 116 1.346068 GCCTAAGATGGCCAGGACTAG 59.654 57.143 13.05 9.11 46.82 2.57
116 117 1.424638 GCCTAAGATGGCCAGGACTA 58.575 55.000 13.05 0.00 46.82 2.59
117 118 2.225792 GCCTAAGATGGCCAGGACT 58.774 57.895 13.05 7.88 46.82 3.85
118 119 4.887615 GCCTAAGATGGCCAGGAC 57.112 61.111 13.05 5.34 46.82 3.85
158 159 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
159 160 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
160 161 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
165 166 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
166 167 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
210 211 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
211 212 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
212 213 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
213 214 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
214 215 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
216 217 1.527433 GGTGGGCTCAAAACTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
217 218 0.178992 TGGTGGGCTCAAAACTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
218 219 1.242076 CTGGTGGGCTCAAAACTCAG 58.758 55.000 0.00 0.00 0.00 3.35
219 220 0.823356 GCTGGTGGGCTCAAAACTCA 60.823 55.000 0.00 0.00 0.00 3.41
220 221 0.823356 TGCTGGTGGGCTCAAAACTC 60.823 55.000 0.00 0.00 0.00 3.01
221 222 0.825010 CTGCTGGTGGGCTCAAAACT 60.825 55.000 0.00 0.00 0.00 2.66
222 223 1.662044 CTGCTGGTGGGCTCAAAAC 59.338 57.895 0.00 0.00 0.00 2.43
223 224 1.531365 CCTGCTGGTGGGCTCAAAA 60.531 57.895 0.51 0.00 0.00 2.44
224 225 2.115910 CCTGCTGGTGGGCTCAAA 59.884 61.111 0.51 0.00 0.00 2.69
225 226 3.970410 CCCTGCTGGTGGGCTCAA 61.970 66.667 9.00 0.00 37.99 3.02
232 233 4.729918 GTCCAGGCCCTGCTGGTG 62.730 72.222 4.81 0.37 41.28 4.17
244 245 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
245 246 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
250 251 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
251 252 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
252 253 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
253 254 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
254 255 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
255 256 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
256 257 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
257 258 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
258 259 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
259 260 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
260 261 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
261 262 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
262 263 6.040842 TCTCTTCCTTAAAATGCCAATATGCC 59.959 38.462 0.00 0.00 0.00 4.40
263 264 6.920210 GTCTCTTCCTTAAAATGCCAATATGC 59.080 38.462 0.00 0.00 0.00 3.14
264 265 7.428826 GGTCTCTTCCTTAAAATGCCAATATG 58.571 38.462 0.00 0.00 0.00 1.78
265 266 6.551227 GGGTCTCTTCCTTAAAATGCCAATAT 59.449 38.462 0.00 0.00 0.00 1.28
266 267 5.891551 GGGTCTCTTCCTTAAAATGCCAATA 59.108 40.000 0.00 0.00 0.00 1.90
267 268 4.711846 GGGTCTCTTCCTTAAAATGCCAAT 59.288 41.667 0.00 0.00 0.00 3.16
268 269 4.086457 GGGTCTCTTCCTTAAAATGCCAA 58.914 43.478 0.00 0.00 0.00 4.52
269 270 3.697166 GGGTCTCTTCCTTAAAATGCCA 58.303 45.455 0.00 0.00 0.00 4.92
270 271 2.683362 CGGGTCTCTTCCTTAAAATGCC 59.317 50.000 0.00 0.00 0.00 4.40
271 272 2.683362 CCGGGTCTCTTCCTTAAAATGC 59.317 50.000 0.00 0.00 0.00 3.56
272 273 2.683362 GCCGGGTCTCTTCCTTAAAATG 59.317 50.000 2.18 0.00 0.00 2.32
273 274 2.356844 GGCCGGGTCTCTTCCTTAAAAT 60.357 50.000 2.18 0.00 0.00 1.82
274 275 1.003928 GGCCGGGTCTCTTCCTTAAAA 59.996 52.381 2.18 0.00 0.00 1.52
275 276 0.616891 GGCCGGGTCTCTTCCTTAAA 59.383 55.000 2.18 0.00 0.00 1.52
276 277 1.269703 GGGCCGGGTCTCTTCCTTAA 61.270 60.000 2.18 0.00 0.00 1.85
277 278 1.688187 GGGCCGGGTCTCTTCCTTA 60.688 63.158 2.18 0.00 0.00 2.69
278 279 3.009714 GGGCCGGGTCTCTTCCTT 61.010 66.667 2.18 0.00 0.00 3.36
279 280 4.332543 TGGGCCGGGTCTCTTCCT 62.333 66.667 2.18 0.00 0.00 3.36
280 281 4.097361 GTGGGCCGGGTCTCTTCC 62.097 72.222 2.18 0.00 0.00 3.46
281 282 4.452733 CGTGGGCCGGGTCTCTTC 62.453 72.222 2.18 0.00 0.00 2.87
308 309 0.332972 AGCCCTGAAAAGCCCTTAGG 59.667 55.000 0.00 0.00 0.00 2.69
309 310 2.222227 AAGCCCTGAAAAGCCCTTAG 57.778 50.000 0.00 0.00 0.00 2.18
310 311 2.694616 AAAGCCCTGAAAAGCCCTTA 57.305 45.000 0.00 0.00 0.00 2.69
311 312 1.806496 AAAAGCCCTGAAAAGCCCTT 58.194 45.000 0.00 0.00 0.00 3.95
312 313 1.806496 AAAAAGCCCTGAAAAGCCCT 58.194 45.000 0.00 0.00 0.00 5.19
313 314 2.289444 GGTAAAAAGCCCTGAAAAGCCC 60.289 50.000 0.00 0.00 0.00 5.19
314 315 2.367241 TGGTAAAAAGCCCTGAAAAGCC 59.633 45.455 0.00 0.00 0.00 4.35
315 316 3.320826 TCTGGTAAAAAGCCCTGAAAAGC 59.679 43.478 0.00 0.00 0.00 3.51
316 317 5.473039 CATCTGGTAAAAAGCCCTGAAAAG 58.527 41.667 0.00 0.00 0.00 2.27
317 318 4.283212 CCATCTGGTAAAAAGCCCTGAAAA 59.717 41.667 0.00 0.00 0.00 2.29
318 319 3.831911 CCATCTGGTAAAAAGCCCTGAAA 59.168 43.478 0.00 0.00 0.00 2.69
319 320 3.075283 TCCATCTGGTAAAAAGCCCTGAA 59.925 43.478 0.00 0.00 36.34 3.02
320 321 2.647299 TCCATCTGGTAAAAAGCCCTGA 59.353 45.455 0.00 0.00 36.34 3.86
321 322 2.755103 GTCCATCTGGTAAAAAGCCCTG 59.245 50.000 0.00 0.00 36.34 4.45
322 323 2.291605 GGTCCATCTGGTAAAAAGCCCT 60.292 50.000 0.00 0.00 36.34 5.19
323 324 2.100197 GGTCCATCTGGTAAAAAGCCC 58.900 52.381 0.00 0.00 36.34 5.19
324 325 1.743394 CGGTCCATCTGGTAAAAAGCC 59.257 52.381 0.00 0.00 36.34 4.35
325 326 1.743394 CCGGTCCATCTGGTAAAAAGC 59.257 52.381 0.00 0.00 37.78 3.51
326 327 2.365582 CCCGGTCCATCTGGTAAAAAG 58.634 52.381 0.00 0.00 40.86 2.27
327 328 1.614850 GCCCGGTCCATCTGGTAAAAA 60.615 52.381 0.00 0.00 40.86 1.94
328 329 0.034863 GCCCGGTCCATCTGGTAAAA 60.035 55.000 0.00 0.00 40.86 1.52
329 330 0.912487 AGCCCGGTCCATCTGGTAAA 60.912 55.000 0.00 0.00 40.86 2.01
330 331 0.912487 AAGCCCGGTCCATCTGGTAA 60.912 55.000 0.00 0.00 40.86 2.85
331 332 1.306654 AAGCCCGGTCCATCTGGTA 60.307 57.895 0.00 0.00 40.86 3.25
332 333 2.610859 AAGCCCGGTCCATCTGGT 60.611 61.111 0.00 0.00 40.86 4.00
333 334 2.124570 CAAGCCCGGTCCATCTGG 60.125 66.667 0.00 0.00 42.06 3.86
334 335 2.124570 CCAAGCCCGGTCCATCTG 60.125 66.667 0.00 0.00 0.00 2.90
335 336 2.285368 TCCAAGCCCGGTCCATCT 60.285 61.111 0.00 0.00 0.00 2.90
336 337 2.124695 GTCCAAGCCCGGTCCATC 60.125 66.667 0.00 0.00 0.00 3.51
337 338 0.912487 TAAGTCCAAGCCCGGTCCAT 60.912 55.000 0.00 0.00 0.00 3.41
338 339 1.128809 TTAAGTCCAAGCCCGGTCCA 61.129 55.000 0.00 0.00 0.00 4.02
339 340 0.037160 TTTAAGTCCAAGCCCGGTCC 59.963 55.000 0.00 0.00 0.00 4.46
340 341 1.900245 TTTTAAGTCCAAGCCCGGTC 58.100 50.000 0.00 0.00 0.00 4.79
341 342 2.235891 CTTTTTAAGTCCAAGCCCGGT 58.764 47.619 0.00 0.00 0.00 5.28
342 343 2.235891 ACTTTTTAAGTCCAAGCCCGG 58.764 47.619 0.00 0.00 37.02 5.73
343 344 3.439129 CCTACTTTTTAAGTCCAAGCCCG 59.561 47.826 0.00 0.00 41.77 6.13
344 345 3.192844 GCCTACTTTTTAAGTCCAAGCCC 59.807 47.826 0.00 0.00 41.77 5.19
345 346 3.192844 GGCCTACTTTTTAAGTCCAAGCC 59.807 47.826 0.00 1.78 41.77 4.35
346 347 3.192844 GGGCCTACTTTTTAAGTCCAAGC 59.807 47.826 0.84 0.00 41.77 4.01
347 348 3.439129 CGGGCCTACTTTTTAAGTCCAAG 59.561 47.826 0.84 0.00 41.77 3.61
348 349 3.072768 TCGGGCCTACTTTTTAAGTCCAA 59.927 43.478 0.84 0.00 41.77 3.53
349 350 2.638855 TCGGGCCTACTTTTTAAGTCCA 59.361 45.455 0.84 0.00 41.77 4.02
350 351 3.339253 TCGGGCCTACTTTTTAAGTCC 57.661 47.619 0.84 0.00 41.77 3.85
351 352 3.626217 CCATCGGGCCTACTTTTTAAGTC 59.374 47.826 0.84 0.00 41.77 3.01
352 353 3.009805 ACCATCGGGCCTACTTTTTAAGT 59.990 43.478 0.84 0.00 40.99 2.24
353 354 3.617284 ACCATCGGGCCTACTTTTTAAG 58.383 45.455 0.84 0.00 37.90 1.85
354 355 3.724732 ACCATCGGGCCTACTTTTTAA 57.275 42.857 0.84 0.00 37.90 1.52
355 356 3.135167 CCTACCATCGGGCCTACTTTTTA 59.865 47.826 0.84 0.00 37.90 1.52
356 357 2.092592 CCTACCATCGGGCCTACTTTTT 60.093 50.000 0.84 0.00 37.90 1.94
357 358 1.489230 CCTACCATCGGGCCTACTTTT 59.511 52.381 0.84 0.00 37.90 2.27
358 359 1.129058 CCTACCATCGGGCCTACTTT 58.871 55.000 0.84 0.00 37.90 2.66
359 360 0.763223 CCCTACCATCGGGCCTACTT 60.763 60.000 0.84 0.00 37.90 2.24
360 361 1.152312 CCCTACCATCGGGCCTACT 60.152 63.158 0.84 0.00 37.90 2.57
361 362 3.468063 CCCTACCATCGGGCCTAC 58.532 66.667 0.84 0.00 37.90 3.18
366 367 3.560251 CCAGGCCCTACCATCGGG 61.560 72.222 0.00 0.00 44.89 5.14
367 368 3.560251 CCCAGGCCCTACCATCGG 61.560 72.222 0.00 0.00 43.14 4.18
368 369 2.445845 TCCCAGGCCCTACCATCG 60.446 66.667 0.00 0.00 43.14 3.84
369 370 2.150051 CCTCCCAGGCCCTACCATC 61.150 68.421 0.00 0.00 43.14 3.51
370 371 2.039405 CCTCCCAGGCCCTACCAT 60.039 66.667 0.00 0.00 43.14 3.55
371 372 4.431524 CCCTCCCAGGCCCTACCA 62.432 72.222 0.00 0.00 43.14 3.25
391 392 1.228552 GGCAGAAAACTGAGGCCCA 60.229 57.895 0.00 0.00 38.70 5.36
392 393 2.335712 CGGCAGAAAACTGAGGCCC 61.336 63.158 0.00 0.00 41.58 5.80
393 394 1.600916 ACGGCAGAAAACTGAGGCC 60.601 57.895 0.00 0.00 41.20 5.19
394 395 1.576421 CACGGCAGAAAACTGAGGC 59.424 57.895 0.00 0.00 0.00 4.70
395 396 1.237285 CCCACGGCAGAAAACTGAGG 61.237 60.000 0.00 0.00 0.00 3.86
396 397 2.247790 CCCACGGCAGAAAACTGAG 58.752 57.895 0.00 0.00 0.00 3.35
397 398 4.473643 CCCACGGCAGAAAACTGA 57.526 55.556 0.00 0.00 0.00 3.41
408 409 2.650778 GCCTGAAAAAGCCCACGG 59.349 61.111 0.00 0.00 0.00 4.94
409 410 2.650778 GGCCTGAAAAAGCCCACG 59.349 61.111 0.00 0.00 43.76 4.94
414 415 4.069232 GGCCGGGCCTGAAAAAGC 62.069 66.667 30.86 7.24 46.69 3.51
451 452 1.270839 CGAACTATACCTGGCCATGGG 60.271 57.143 20.97 16.10 0.00 4.00
452 453 1.691976 TCGAACTATACCTGGCCATGG 59.308 52.381 5.51 13.05 0.00 3.66
453 454 2.868044 GCTCGAACTATACCTGGCCATG 60.868 54.545 5.51 6.06 0.00 3.66
454 455 1.344763 GCTCGAACTATACCTGGCCAT 59.655 52.381 5.51 0.00 0.00 4.40
455 456 0.750850 GCTCGAACTATACCTGGCCA 59.249 55.000 4.71 4.71 0.00 5.36
456 457 0.033642 GGCTCGAACTATACCTGGCC 59.966 60.000 0.00 0.00 0.00 5.36
457 458 0.033642 GGGCTCGAACTATACCTGGC 59.966 60.000 0.00 0.00 0.00 4.85
458 459 1.068741 GTGGGCTCGAACTATACCTGG 59.931 57.143 0.00 0.00 0.00 4.45
459 460 1.068741 GGTGGGCTCGAACTATACCTG 59.931 57.143 0.00 0.00 0.00 4.00
460 461 1.342674 TGGTGGGCTCGAACTATACCT 60.343 52.381 0.00 0.00 0.00 3.08
461 462 1.117150 TGGTGGGCTCGAACTATACC 58.883 55.000 0.00 0.00 0.00 2.73
462 463 1.202498 GGTGGTGGGCTCGAACTATAC 60.202 57.143 0.00 0.00 0.00 1.47
463 464 1.117150 GGTGGTGGGCTCGAACTATA 58.883 55.000 0.00 0.00 0.00 1.31
464 465 0.907704 TGGTGGTGGGCTCGAACTAT 60.908 55.000 0.00 0.00 0.00 2.12
465 466 1.122632 TTGGTGGTGGGCTCGAACTA 61.123 55.000 0.00 0.00 0.00 2.24
466 467 1.990160 TTTGGTGGTGGGCTCGAACT 61.990 55.000 0.00 0.00 0.00 3.01
467 468 1.104577 TTTTGGTGGTGGGCTCGAAC 61.105 55.000 0.00 0.00 0.00 3.95
468 469 0.821711 CTTTTGGTGGTGGGCTCGAA 60.822 55.000 0.00 0.00 0.00 3.71
469 470 1.228124 CTTTTGGTGGTGGGCTCGA 60.228 57.895 0.00 0.00 0.00 4.04
470 471 2.919494 GCTTTTGGTGGTGGGCTCG 61.919 63.158 0.00 0.00 0.00 5.03
471 472 1.398958 TTGCTTTTGGTGGTGGGCTC 61.399 55.000 0.00 0.00 0.00 4.70
472 473 0.980231 TTTGCTTTTGGTGGTGGGCT 60.980 50.000 0.00 0.00 0.00 5.19
473 474 0.813610 GTTTGCTTTTGGTGGTGGGC 60.814 55.000 0.00 0.00 0.00 5.36
474 475 0.829990 AGTTTGCTTTTGGTGGTGGG 59.170 50.000 0.00 0.00 0.00 4.61
475 476 2.545742 GCTAGTTTGCTTTTGGTGGTGG 60.546 50.000 0.00 0.00 0.00 4.61
476 477 2.362077 AGCTAGTTTGCTTTTGGTGGTG 59.638 45.455 0.00 0.00 40.93 4.17
477 478 2.623416 GAGCTAGTTTGCTTTTGGTGGT 59.377 45.455 0.00 0.00 44.17 4.16
478 479 2.350772 CGAGCTAGTTTGCTTTTGGTGG 60.351 50.000 0.00 0.00 44.17 4.61
479 480 2.548057 TCGAGCTAGTTTGCTTTTGGTG 59.452 45.455 0.00 0.00 44.17 4.17
480 481 2.808543 CTCGAGCTAGTTTGCTTTTGGT 59.191 45.455 0.00 0.00 44.17 3.67
481 482 3.067106 TCTCGAGCTAGTTTGCTTTTGG 58.933 45.455 7.81 0.00 44.17 3.28
482 483 3.124297 CCTCTCGAGCTAGTTTGCTTTTG 59.876 47.826 7.81 0.00 44.17 2.44
483 484 3.006967 TCCTCTCGAGCTAGTTTGCTTTT 59.993 43.478 7.81 0.00 44.17 2.27
484 485 2.563179 TCCTCTCGAGCTAGTTTGCTTT 59.437 45.455 7.81 0.00 44.17 3.51
485 486 2.171840 TCCTCTCGAGCTAGTTTGCTT 58.828 47.619 7.81 0.00 44.17 3.91
487 488 2.880963 ATCCTCTCGAGCTAGTTTGC 57.119 50.000 7.81 0.00 0.00 3.68
488 489 4.328440 CACAAATCCTCTCGAGCTAGTTTG 59.672 45.833 21.04 21.04 0.00 2.93
489 490 4.220821 TCACAAATCCTCTCGAGCTAGTTT 59.779 41.667 7.81 3.88 0.00 2.66
490 491 3.764434 TCACAAATCCTCTCGAGCTAGTT 59.236 43.478 7.81 0.00 0.00 2.24
491 492 3.129638 GTCACAAATCCTCTCGAGCTAGT 59.870 47.826 7.81 0.00 0.00 2.57
492 493 3.129462 TGTCACAAATCCTCTCGAGCTAG 59.871 47.826 7.81 0.13 0.00 3.42
493 494 3.089284 TGTCACAAATCCTCTCGAGCTA 58.911 45.455 7.81 0.00 0.00 3.32
494 495 1.895798 TGTCACAAATCCTCTCGAGCT 59.104 47.619 7.81 0.00 0.00 4.09
495 496 2.094494 TCTGTCACAAATCCTCTCGAGC 60.094 50.000 7.81 0.00 0.00 5.03
496 497 3.506810 GTCTGTCACAAATCCTCTCGAG 58.493 50.000 5.93 5.93 0.00 4.04
497 498 2.095212 CGTCTGTCACAAATCCTCTCGA 60.095 50.000 0.00 0.00 0.00 4.04
498 499 2.095212 TCGTCTGTCACAAATCCTCTCG 60.095 50.000 0.00 0.00 0.00 4.04
499 500 3.577649 TCGTCTGTCACAAATCCTCTC 57.422 47.619 0.00 0.00 0.00 3.20
500 501 4.336889 TTTCGTCTGTCACAAATCCTCT 57.663 40.909 0.00 0.00 0.00 3.69
501 502 5.418310 TTTTTCGTCTGTCACAAATCCTC 57.582 39.130 0.00 0.00 0.00 3.71
520 521 1.616159 CGGTGGGACCAGATGTTTTT 58.384 50.000 0.00 0.00 38.47 1.94
521 522 0.893727 GCGGTGGGACCAGATGTTTT 60.894 55.000 0.00 0.00 38.47 2.43
522 523 1.303317 GCGGTGGGACCAGATGTTT 60.303 57.895 0.00 0.00 38.47 2.83
523 524 2.063015 TTGCGGTGGGACCAGATGTT 62.063 55.000 0.00 0.00 38.47 2.71
524 525 2.063015 TTTGCGGTGGGACCAGATGT 62.063 55.000 0.00 0.00 38.47 3.06
525 526 1.303236 TTTGCGGTGGGACCAGATG 60.303 57.895 0.00 0.00 38.47 2.90
526 527 1.303317 GTTTGCGGTGGGACCAGAT 60.303 57.895 0.00 0.00 38.47 2.90
527 528 2.112297 GTTTGCGGTGGGACCAGA 59.888 61.111 0.00 0.00 38.47 3.86
528 529 2.983592 GGTTTGCGGTGGGACCAG 60.984 66.667 0.00 0.00 38.47 4.00
529 530 2.856039 TTTGGTTTGCGGTGGGACCA 62.856 55.000 0.00 0.00 38.47 4.02
530 531 1.677637 TTTTGGTTTGCGGTGGGACC 61.678 55.000 0.00 0.00 34.05 4.46
531 532 0.175989 TTTTTGGTTTGCGGTGGGAC 59.824 50.000 0.00 0.00 0.00 4.46
532 533 2.591915 TTTTTGGTTTGCGGTGGGA 58.408 47.368 0.00 0.00 0.00 4.37
548 549 7.423844 AGGAAGGATTGTTTCTTCACTTTTT 57.576 32.000 0.00 0.00 40.65 1.94
549 550 7.423844 AAGGAAGGATTGTTTCTTCACTTTT 57.576 32.000 0.00 0.00 40.65 2.27
550 551 7.423844 AAAGGAAGGATTGTTTCTTCACTTT 57.576 32.000 0.00 0.00 40.65 2.66
551 552 8.533569 TTAAAGGAAGGATTGTTTCTTCACTT 57.466 30.769 0.00 0.00 40.65 3.16
552 553 8.533569 TTTAAAGGAAGGATTGTTTCTTCACT 57.466 30.769 0.00 0.00 40.65 3.41
553 554 9.764363 ATTTTAAAGGAAGGATTGTTTCTTCAC 57.236 29.630 0.00 0.00 40.65 3.18
737 738 1.940613 GGTAAGCCGTAGCAAATCCTG 59.059 52.381 0.00 0.00 43.56 3.86
772 773 2.368011 GGAGAACCTAGGCGCCCTT 61.368 63.158 26.15 8.44 34.61 3.95
773 774 2.764547 GGAGAACCTAGGCGCCCT 60.765 66.667 26.15 12.29 37.71 5.19
774 775 2.764547 AGGAGAACCTAGGCGCCC 60.765 66.667 26.15 6.38 45.83 6.13
775 776 2.501610 CAGGAGAACCTAGGCGCC 59.498 66.667 21.89 21.89 45.94 6.53
776 777 1.900545 AACCAGGAGAACCTAGGCGC 61.901 60.000 9.30 0.00 45.94 6.53
777 778 0.108138 CAACCAGGAGAACCTAGGCG 60.108 60.000 9.30 0.00 45.94 5.52
939 973 0.175531 GTCTGGAGCAGAGAGGAAGC 59.824 60.000 0.00 0.00 41.46 3.86
968 1002 1.213430 GAATCCCCAACCCAATACGGA 59.787 52.381 0.00 0.00 36.56 4.69
1029 1063 1.045350 TCTGGATCAGGCTAAGCGCT 61.045 55.000 2.64 2.64 39.13 5.92
1248 1282 2.791655 TCACTCCTCTCGCTACAAGAA 58.208 47.619 0.00 0.00 0.00 2.52
1251 1285 3.089284 TGAATCACTCCTCTCGCTACAA 58.911 45.455 0.00 0.00 0.00 2.41
1296 1330 1.141881 CTTAGAGCGGCACCACGAT 59.858 57.895 1.45 0.00 35.47 3.73
1311 1345 1.682451 CCAATCCGGCGAGGTCCTTA 61.682 60.000 9.30 0.00 41.99 2.69
1319 1353 3.872603 CATCCCCCAATCCGGCGA 61.873 66.667 9.30 0.00 0.00 5.54
1368 1402 2.584608 GTGAGGTCACCCATCCGG 59.415 66.667 0.00 0.00 40.85 5.14
1386 1420 2.351418 TCCGACAGCAATTTTCATAGCG 59.649 45.455 0.00 0.00 0.00 4.26
1389 1423 4.576053 CCATCTCCGACAGCAATTTTCATA 59.424 41.667 0.00 0.00 0.00 2.15
1398 1432 2.038813 TCCCCATCTCCGACAGCA 59.961 61.111 0.00 0.00 0.00 4.41
1401 1435 0.687757 CCTTCTCCCCATCTCCGACA 60.688 60.000 0.00 0.00 0.00 4.35
1404 1438 0.683973 CATCCTTCTCCCCATCTCCG 59.316 60.000 0.00 0.00 0.00 4.63
1428 1462 1.528542 CGTCTCCGGAGCCATCCTA 60.529 63.158 27.39 4.41 44.22 2.94
1660 1694 1.557269 ATGGGCTCCGCTGAGAGTTT 61.557 55.000 9.60 0.00 41.42 2.66
1719 1753 2.917933 TCCTTAGCATTTCCATGGACG 58.082 47.619 15.91 7.32 0.00 4.79
1917 1951 5.046014 AGACAGTAAGATGTTGAAGCTGGAT 60.046 40.000 0.00 0.00 32.25 3.41
2085 2119 7.394359 TCAAGCATATCTTCTACAAGCCTTTTT 59.606 33.333 0.00 0.00 31.27 1.94
2147 2181 2.173519 CACAAAGGATGCCAATGAGGT 58.826 47.619 0.00 0.00 40.61 3.85
2214 2248 2.102588 AGTGTCCGCTAACTCACAACTT 59.897 45.455 0.00 0.00 33.84 2.66
2228 2262 4.861462 GCAGATCATATGTATGAGTGTCCG 59.139 45.833 1.90 0.00 45.01 4.79
2554 2589 6.548321 TCATACATAGTTCCAAACCAAAGGT 58.452 36.000 0.00 0.00 37.65 3.50
2831 2876 5.070580 ACTTCGACATAAGGATTAAGGAGGG 59.929 44.000 0.00 0.00 32.17 4.30
2834 2879 7.342284 AGAGAACTTCGACATAAGGATTAAGGA 59.658 37.037 0.00 0.00 32.17 3.36
2835 2880 7.493367 AGAGAACTTCGACATAAGGATTAAGG 58.507 38.462 0.00 0.00 32.17 2.69
2838 2883 9.350951 TGATAGAGAACTTCGACATAAGGATTA 57.649 33.333 0.00 0.00 33.48 1.75
2839 2884 8.239038 TGATAGAGAACTTCGACATAAGGATT 57.761 34.615 0.00 0.00 0.00 3.01
2840 2885 7.825331 TGATAGAGAACTTCGACATAAGGAT 57.175 36.000 0.00 0.00 0.00 3.24
3063 3110 4.572909 ACTATTGAAAACAGGTACGGGAC 58.427 43.478 0.00 0.00 0.00 4.46
3068 3115 7.704899 AGCAAACAAACTATTGAAAACAGGTAC 59.295 33.333 0.00 0.00 38.94 3.34
3169 3216 2.040544 GTCCAGCAATGGGTGACGG 61.041 63.158 0.00 0.00 45.29 4.79
3172 3219 0.770499 TTGAGTCCAGCAATGGGTGA 59.230 50.000 0.00 0.00 45.29 4.02
3258 3305 6.008331 ACATAAAGAAAACTGGAAGGGGTAC 58.992 40.000 0.00 0.00 39.30 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.