Multiple sequence alignment - TraesCS3A01G389200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G389200 chr3A 100.000 3817 0 0 1 3817 638027141 638030957 0.000000e+00 7049.0
1 TraesCS3A01G389200 chr3B 89.666 2516 143 40 552 2979 656289671 656292157 0.000000e+00 3097.0
2 TraesCS3A01G389200 chr3B 89.785 558 48 8 2 553 656289090 656289644 0.000000e+00 706.0
3 TraesCS3A01G389200 chr3B 88.053 226 27 0 3591 3816 656458538 656458763 6.290000e-68 268.0
4 TraesCS3A01G389200 chr3B 92.208 154 11 1 3438 3591 656292654 656292806 2.310000e-52 217.0
5 TraesCS3A01G389200 chr3D 89.913 2409 116 51 552 2871 496785623 496787993 0.000000e+00 2985.0
6 TraesCS3A01G389200 chr3D 91.800 561 35 5 1 553 496785013 496785570 0.000000e+00 771.0
7 TraesCS3A01G389200 chr3D 91.131 451 40 0 3360 3810 496794661 496795111 2.520000e-171 612.0
8 TraesCS3A01G389200 chr3D 94.872 39 2 0 3302 3340 546636642 546636604 1.140000e-05 62.1
9 TraesCS3A01G389200 chr1B 86.770 257 25 7 1731 1987 486489653 486489406 1.040000e-70 278.0
10 TraesCS3A01G389200 chr1B 84.043 188 25 3 1443 1626 486489860 486489674 3.920000e-40 176.0
11 TraesCS3A01G389200 chr1B 94.444 36 2 0 3166 3201 536761549 536761514 5.330000e-04 56.5
12 TraesCS3A01G389200 chr1A 86.822 258 23 9 1731 1987 462401070 462400823 1.040000e-70 278.0
13 TraesCS3A01G389200 chr1A 84.574 188 24 3 1443 1626 462401277 462401091 8.420000e-42 182.0
14 TraesCS3A01G389200 chr1D 86.719 256 25 7 1731 1986 363250875 363250629 3.760000e-70 276.0
15 TraesCS3A01G389200 chr1D 84.574 188 24 3 1443 1626 363251082 363250896 8.420000e-42 182.0
16 TraesCS3A01G389200 chr1D 91.071 56 5 0 3753 3808 339283683 339283738 4.090000e-10 76.8
17 TraesCS3A01G389200 chr1D 85.484 62 9 0 3139 3200 400024455 400024394 8.850000e-07 65.8
18 TraesCS3A01G389200 chr7A 83.453 139 23 0 3380 3518 41457793 41457655 3.090000e-26 130.0
19 TraesCS3A01G389200 chr7A 87.302 63 3 4 3302 3361 726819981 726819921 2.460000e-07 67.6
20 TraesCS3A01G389200 chr7A 87.500 56 6 1 3302 3356 343354854 343354909 3.180000e-06 63.9
21 TraesCS3A01G389200 chr6B 79.082 196 34 7 3381 3573 199948689 199948498 1.110000e-25 128.0
22 TraesCS3A01G389200 chr7D 80.128 156 31 0 3363 3518 474019744 474019589 2.410000e-22 117.0
23 TraesCS3A01G389200 chr4D 79.630 162 28 5 3380 3539 474718089 474717931 1.120000e-20 111.0
24 TraesCS3A01G389200 chr4D 100.000 33 0 0 3165 3197 483611194 483611162 1.140000e-05 62.1
25 TraesCS3A01G389200 chr2B 80.282 142 28 0 3374 3515 158352264 158352405 1.450000e-19 108.0
26 TraesCS3A01G389200 chr2D 79.562 137 28 0 3382 3518 650718460 650718596 8.730000e-17 99.0
27 TraesCS3A01G389200 chr2D 84.091 88 11 3 3723 3808 70818002 70818088 8.790000e-12 82.4
28 TraesCS3A01G389200 chr2D 97.143 35 1 0 3010 3044 23512490 23512456 4.120000e-05 60.2
29 TraesCS3A01G389200 chr5A 76.687 163 31 7 3206 3366 547664774 547664931 2.440000e-12 84.2
30 TraesCS3A01G389200 chr5A 97.561 41 0 1 2988 3028 1250566 1250527 6.840000e-08 69.4
31 TraesCS3A01G389200 chr4B 87.692 65 5 2 3302 3363 147069373 147069309 5.290000e-09 73.1
32 TraesCS3A01G389200 chr4B 85.294 68 10 0 3472 3539 599174154 599174087 1.900000e-08 71.3
33 TraesCS3A01G389200 chr5D 97.561 41 0 1 2988 3028 476710100 476710139 6.840000e-08 69.4
34 TraesCS3A01G389200 chr6D 83.099 71 11 1 3302 3371 3606371 3606301 3.180000e-06 63.9
35 TraesCS3A01G389200 chr2A 86.207 58 5 2 3302 3357 185128400 185128344 4.120000e-05 60.2
36 TraesCS3A01G389200 chrUn 96.970 33 1 0 3302 3334 154634720 154634752 5.330000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G389200 chr3A 638027141 638030957 3816 False 7049 7049 100.0000 1 3817 1 chr3A.!!$F1 3816
1 TraesCS3A01G389200 chr3B 656289090 656292806 3716 False 1340 3097 90.5530 2 3591 3 chr3B.!!$F2 3589
2 TraesCS3A01G389200 chr3D 496785013 496787993 2980 False 1878 2985 90.8565 1 2871 2 chr3D.!!$F2 2870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 201 0.110823 GCGGTTAACAGAAGTGTGCG 60.111 55.0 10.11 0.58 36.84 5.34 F
1347 1457 0.904649 ATCATGAGCGAGGTGTCCAA 59.095 50.0 0.09 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1467 0.249699 CGTATGCTTACCGGATGGCA 60.250 55.0 9.46 15.41 39.7 4.92 R
3209 3428 0.034059 AGAGTGTCGTTTCCCTGCTG 59.966 55.0 0.00 0.00 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 8.922058 TCGATCTAAAGAATGTTTGTAGGTAC 57.078 34.615 0.00 0.00 0.00 3.34
83 84 6.657836 ATGTTTGTAGGTACGATGCTTTAC 57.342 37.500 0.00 0.00 0.00 2.01
120 122 4.228210 AGAATATCCCCTTGCAGAAACTCA 59.772 41.667 0.00 0.00 0.00 3.41
134 136 6.016111 GCAGAAACTCAAAAGCTTACGTATC 58.984 40.000 0.00 0.00 0.00 2.24
149 151 6.201806 GCTTACGTATCATCTTTGCATTCTCT 59.798 38.462 0.00 0.00 0.00 3.10
159 161 2.627515 TGCATTCTCTCAGCATACCC 57.372 50.000 0.00 0.00 32.55 3.69
198 201 0.110823 GCGGTTAACAGAAGTGTGCG 60.111 55.000 10.11 0.58 36.84 5.34
278 288 5.593679 AGGATTCATTCAAATTCCAGCAG 57.406 39.130 0.00 0.00 0.00 4.24
309 319 2.674380 GTGGAAGGCTGGTGCTGG 60.674 66.667 0.00 0.00 39.59 4.85
310 320 3.177884 TGGAAGGCTGGTGCTGGT 61.178 61.111 0.00 0.00 39.59 4.00
345 355 6.645790 ATCAGATGGATGCCATTTTAGTTC 57.354 37.500 0.00 0.00 45.26 3.01
391 401 5.964958 ACAATGTAATCCCTGTGAGTTTG 57.035 39.130 0.00 0.00 0.00 2.93
412 422 6.554334 TTGGTGAACTAGCAACTTGATAAC 57.446 37.500 0.00 0.00 41.53 1.89
462 473 3.747193 CATCAAATGTACCGTGCAGTTC 58.253 45.455 0.00 0.00 0.00 3.01
468 479 6.038382 TCAAATGTACCGTGCAGTTCTTTTTA 59.962 34.615 0.00 0.00 0.00 1.52
483 496 5.856126 TCTTTTTACCTATGACAACGCAG 57.144 39.130 0.00 0.00 0.00 5.18
484 497 4.693566 TCTTTTTACCTATGACAACGCAGG 59.306 41.667 0.00 0.00 0.00 4.85
491 504 3.414700 GACAACGCAGGGCAGTCG 61.415 66.667 0.00 0.00 0.00 4.18
494 507 3.307906 AACGCAGGGCAGTCGGTA 61.308 61.111 0.00 0.00 0.00 4.02
496 509 2.047655 CGCAGGGCAGTCGGTAAA 60.048 61.111 0.00 0.00 0.00 2.01
513 526 5.462068 TCGGTAAATTCAGTGAATCGCTATG 59.538 40.000 18.52 7.94 30.29 2.23
560 627 6.149474 GGCATGCTACGATTATCCTTTGTAAT 59.851 38.462 18.92 0.00 0.00 1.89
634 702 4.569564 GGTTATCCTCACGTGAAACATACC 59.430 45.833 24.56 21.04 35.74 2.73
675 743 1.956170 CATAAGCCGGCAGCCGTAG 60.956 63.158 31.68 18.81 46.80 3.51
688 756 1.080569 CCGTAGCGTAAACCCGTGT 60.081 57.895 0.00 0.00 0.00 4.49
711 779 1.228245 TGGCCAAGAACTCCACAGC 60.228 57.895 0.61 0.00 0.00 4.40
714 782 1.518903 GCCAAGAACTCCACAGCCAC 61.519 60.000 0.00 0.00 0.00 5.01
755 823 1.534336 TAGGCGTGGCGTTCTTACCA 61.534 55.000 0.00 0.00 0.00 3.25
904 980 2.414840 TAACGCGAGACTGCACTGCA 62.415 55.000 15.93 3.11 36.92 4.41
929 1005 6.038825 ACACAAATAAATCACCTCGTTCAACA 59.961 34.615 0.00 0.00 0.00 3.33
1036 1120 1.362717 CCGTGCGATCGGTCCTATT 59.637 57.895 18.30 0.00 44.77 1.73
1087 1171 2.725759 CGTGTGGCGAAACTGATCATTG 60.726 50.000 0.00 0.00 44.77 2.82
1088 1172 2.226437 GTGTGGCGAAACTGATCATTGT 59.774 45.455 0.00 0.00 0.00 2.71
1089 1173 2.226200 TGTGGCGAAACTGATCATTGTG 59.774 45.455 0.00 0.00 0.00 3.33
1092 1176 1.812571 GCGAAACTGATCATTGTGGGT 59.187 47.619 0.00 0.00 0.00 4.51
1093 1177 2.414559 GCGAAACTGATCATTGTGGGTG 60.415 50.000 0.00 0.00 0.00 4.61
1094 1178 2.813754 CGAAACTGATCATTGTGGGTGT 59.186 45.455 0.00 0.00 0.00 4.16
1095 1179 3.120199 CGAAACTGATCATTGTGGGTGTC 60.120 47.826 0.00 0.00 0.00 3.67
1125 1229 1.294780 CGCAGCTGGAGAAGAAGGT 59.705 57.895 17.12 0.00 0.00 3.50
1347 1457 0.904649 ATCATGAGCGAGGTGTCCAA 59.095 50.000 0.09 0.00 0.00 3.53
1357 1467 4.379174 GTGTCCAAGACGCACCAT 57.621 55.556 3.51 0.00 41.96 3.55
1360 1470 2.359850 TCCAAGACGCACCATGCC 60.360 61.111 0.00 0.00 41.12 4.40
1365 1475 3.576356 GACGCACCATGCCATCCG 61.576 66.667 0.00 0.00 41.12 4.18
1395 1520 2.534019 CGCCGTCCACCATGCATAC 61.534 63.158 0.00 0.00 0.00 2.39
1408 1533 3.389741 GCATACAGCACTTGTGCAC 57.610 52.632 24.82 10.75 44.79 4.57
1410 1535 1.135859 GCATACAGCACTTGTGCACTC 60.136 52.381 24.82 2.18 44.79 3.51
1426 1551 3.818961 CACTCATTGCACGTTTCTGAT 57.181 42.857 0.00 0.00 0.00 2.90
1428 1553 2.485426 ACTCATTGCACGTTTCTGATGG 59.515 45.455 0.00 0.00 0.00 3.51
1433 1558 0.652592 GCACGTTTCTGATGGATCCG 59.347 55.000 7.39 0.00 0.00 4.18
1437 1562 1.017387 GTTTCTGATGGATCCGCACC 58.983 55.000 7.39 0.00 0.00 5.01
1618 1749 2.756283 CTCCCTCCGCGAGACCTT 60.756 66.667 8.23 0.00 0.00 3.50
1633 1764 1.201429 ACCTTGGTGCCCTCAGGTAG 61.201 60.000 11.47 0.00 36.55 3.18
1685 1838 2.594321 TGCAATGCAGCAACGAATTAC 58.406 42.857 2.72 0.00 42.46 1.89
1687 1840 2.342354 GCAATGCAGCAACGAATTACAC 59.658 45.455 0.00 0.00 0.00 2.90
1693 1846 3.611530 GCAGCAACGAATTACACCATGTT 60.612 43.478 0.00 0.00 0.00 2.71
1703 1859 9.187455 ACGAATTACACCATGTTTAAATTGTTC 57.813 29.630 0.00 0.00 0.00 3.18
1704 1860 9.186323 CGAATTACACCATGTTTAAATTGTTCA 57.814 29.630 0.00 0.00 0.00 3.18
1757 1926 0.978146 AGGAGAAGGGGATCGTGGTG 60.978 60.000 0.00 0.00 0.00 4.17
2022 2191 0.942410 GTGCATGCAGCCTTGTGTTG 60.942 55.000 23.41 0.00 44.83 3.33
2025 2194 0.032952 CATGCAGCCTTGTGTTGCTT 59.967 50.000 0.00 0.00 38.60 3.91
2037 2218 3.976169 TGTGTTGCTTAACATTTCTGCC 58.024 40.909 0.00 0.00 34.86 4.85
2142 2324 3.512516 GGCTGCATGAAGTCCGGC 61.513 66.667 1.73 0.00 0.00 6.13
2148 2330 1.002134 CATGAAGTCCGGCCCTGTT 60.002 57.895 0.00 0.00 0.00 3.16
2163 2345 3.139077 CCCTGTTCTGTCACAAAGGTAC 58.861 50.000 0.00 0.00 0.00 3.34
2170 2352 8.094798 TGTTCTGTCACAAAGGTACAATAATC 57.905 34.615 0.00 0.00 0.00 1.75
2226 2410 5.445407 CCGATGAAAATTGCTGCTGAATTTG 60.445 40.000 10.32 0.70 34.09 2.32
2253 2437 2.862541 TCCATCTTGTTCTTGTGGGTG 58.137 47.619 0.00 0.00 0.00 4.61
2460 2660 1.001624 TTTGCATCTGCGATCGACTG 58.998 50.000 21.57 13.85 45.83 3.51
2636 2845 2.352001 CATGCGATGCGAGCTTGC 60.352 61.111 19.70 19.70 33.99 4.01
2831 3042 2.428890 CACCTGATCTGGAGTAGTGGTC 59.571 54.545 24.13 0.00 0.00 4.02
2876 3087 2.800544 CCGCGCTGTTTAATGTAGCTAT 59.199 45.455 5.56 0.00 35.36 2.97
2878 3089 4.090066 CCGCGCTGTTTAATGTAGCTATAG 59.910 45.833 5.56 0.00 35.36 1.31
2902 3113 5.393461 GCTTGATTTGGAATCCGATCACTTT 60.393 40.000 14.98 0.00 31.62 2.66
2904 3115 5.252547 TGATTTGGAATCCGATCACTTTGA 58.747 37.500 12.31 0.00 0.00 2.69
2945 3156 3.835978 TCCAAAAGTGAGGGATAACTCGA 59.164 43.478 0.00 0.00 40.39 4.04
2946 3157 3.933332 CCAAAAGTGAGGGATAACTCGAC 59.067 47.826 0.00 0.00 40.39 4.20
2947 3158 3.889520 AAAGTGAGGGATAACTCGACC 57.110 47.619 0.00 0.00 40.39 4.79
2955 3166 2.546795 GGGATAACTCGACCTCTGCATG 60.547 54.545 0.00 0.00 0.00 4.06
2958 3169 2.839486 AACTCGACCTCTGCATGAAA 57.161 45.000 0.00 0.00 0.00 2.69
2972 3183 3.108144 GCATGAAACGATGCACATAACC 58.892 45.455 0.00 0.00 46.77 2.85
2978 3189 5.877564 TGAAACGATGCACATAACCATTCTA 59.122 36.000 0.00 0.00 0.00 2.10
2979 3190 6.542005 TGAAACGATGCACATAACCATTCTAT 59.458 34.615 0.00 0.00 0.00 1.98
2980 3191 6.545504 AACGATGCACATAACCATTCTATC 57.454 37.500 0.00 0.00 0.00 2.08
2981 3192 5.610398 ACGATGCACATAACCATTCTATCA 58.390 37.500 0.00 0.00 0.00 2.15
2982 3193 6.233434 ACGATGCACATAACCATTCTATCAT 58.767 36.000 0.00 0.00 0.00 2.45
2983 3194 7.386059 ACGATGCACATAACCATTCTATCATA 58.614 34.615 0.00 0.00 0.00 2.15
2984 3195 7.331934 ACGATGCACATAACCATTCTATCATAC 59.668 37.037 0.00 0.00 0.00 2.39
2985 3196 7.547019 CGATGCACATAACCATTCTATCATACT 59.453 37.037 0.00 0.00 0.00 2.12
2986 3197 8.783833 ATGCACATAACCATTCTATCATACTC 57.216 34.615 0.00 0.00 0.00 2.59
2987 3198 7.734942 TGCACATAACCATTCTATCATACTCA 58.265 34.615 0.00 0.00 0.00 3.41
2988 3199 8.210265 TGCACATAACCATTCTATCATACTCAA 58.790 33.333 0.00 0.00 0.00 3.02
2989 3200 8.715998 GCACATAACCATTCTATCATACTCAAG 58.284 37.037 0.00 0.00 0.00 3.02
2990 3201 9.770097 CACATAACCATTCTATCATACTCAAGT 57.230 33.333 0.00 0.00 0.00 3.16
2991 3202 9.770097 ACATAACCATTCTATCATACTCAAGTG 57.230 33.333 0.00 0.00 0.00 3.16
2992 3203 9.987272 CATAACCATTCTATCATACTCAAGTGA 57.013 33.333 0.00 0.00 0.00 3.41
2993 3204 9.988815 ATAACCATTCTATCATACTCAAGTGAC 57.011 33.333 0.00 0.00 0.00 3.67
2994 3205 7.667575 ACCATTCTATCATACTCAAGTGACT 57.332 36.000 0.00 0.00 0.00 3.41
2995 3206 7.721402 ACCATTCTATCATACTCAAGTGACTC 58.279 38.462 0.00 0.00 0.00 3.36
2996 3207 7.343057 ACCATTCTATCATACTCAAGTGACTCA 59.657 37.037 0.00 0.00 0.00 3.41
2997 3208 8.200120 CCATTCTATCATACTCAAGTGACTCAA 58.800 37.037 0.00 0.00 0.00 3.02
2998 3209 9.029243 CATTCTATCATACTCAAGTGACTCAAC 57.971 37.037 0.00 0.00 0.00 3.18
2999 3210 7.946381 TCTATCATACTCAAGTGACTCAACT 57.054 36.000 0.00 0.00 0.00 3.16
3000 3211 8.354711 TCTATCATACTCAAGTGACTCAACTT 57.645 34.615 0.00 0.00 41.08 2.66
3001 3212 8.807118 TCTATCATACTCAAGTGACTCAACTTT 58.193 33.333 0.00 0.00 38.34 2.66
3005 3216 9.856488 TCATACTCAAGTGACTCAACTTTATAC 57.144 33.333 0.00 0.00 38.34 1.47
3006 3217 9.862371 CATACTCAAGTGACTCAACTTTATACT 57.138 33.333 0.00 0.00 38.34 2.12
3009 3220 9.298250 ACTCAAGTGACTCAACTTTATACTAGA 57.702 33.333 0.00 0.00 38.34 2.43
3068 3279 7.850982 CGAAAGAAATATTATTCAACAGACCCG 59.149 37.037 0.00 0.00 0.00 5.28
3077 3288 5.622770 ATTCAACAGACCCGATAAAACAC 57.377 39.130 0.00 0.00 0.00 3.32
3083 3294 5.741011 ACAGACCCGATAAAACACATACAT 58.259 37.500 0.00 0.00 0.00 2.29
3087 3299 6.706270 AGACCCGATAAAACACATACATGATC 59.294 38.462 0.00 0.00 0.00 2.92
3090 3302 6.430925 CCCGATAAAACACATACATGATCCAT 59.569 38.462 0.00 0.00 0.00 3.41
3100 3312 8.920174 ACACATACATGATCCATTCAAAATCAT 58.080 29.630 0.00 0.00 39.99 2.45
3108 3320 8.584063 TGATCCATTCAAAATCATCTTTCTGA 57.416 30.769 0.00 0.00 0.00 3.27
3117 3329 6.713762 AAATCATCTTTCTGACAACCACAA 57.286 33.333 0.00 0.00 0.00 3.33
3122 3334 3.882888 TCTTTCTGACAACCACAATCACC 59.117 43.478 0.00 0.00 0.00 4.02
3126 3338 2.886523 CTGACAACCACAATCACCACAT 59.113 45.455 0.00 0.00 0.00 3.21
3127 3339 2.884012 TGACAACCACAATCACCACATC 59.116 45.455 0.00 0.00 0.00 3.06
3132 3350 3.674997 ACCACAATCACCACATCTACAC 58.325 45.455 0.00 0.00 0.00 2.90
3133 3351 3.072330 ACCACAATCACCACATCTACACA 59.928 43.478 0.00 0.00 0.00 3.72
3134 3352 4.263462 ACCACAATCACCACATCTACACAT 60.263 41.667 0.00 0.00 0.00 3.21
3160 3378 4.456280 TGATGTGCCCTGATATCGTATC 57.544 45.455 0.00 0.00 0.00 2.24
3165 3383 4.814234 TGTGCCCTGATATCGTATCAAAAC 59.186 41.667 0.00 6.01 0.00 2.43
3166 3384 4.814234 GTGCCCTGATATCGTATCAAAACA 59.186 41.667 0.00 5.13 0.00 2.83
3167 3385 4.814234 TGCCCTGATATCGTATCAAAACAC 59.186 41.667 0.00 0.00 0.00 3.32
3168 3386 4.814234 GCCCTGATATCGTATCAAAACACA 59.186 41.667 0.00 0.00 0.00 3.72
3179 3398 9.770097 ATCGTATCAAAACACATCATCTAATCT 57.230 29.630 0.00 0.00 0.00 2.40
3191 3410 3.118261 TCATCTAATCTGTTGGCCTCACC 60.118 47.826 3.32 0.00 39.84 4.02
3202 3421 2.045536 CCTCACCAAGCCTCCTGC 60.046 66.667 0.00 0.00 41.71 4.85
3220 3468 2.203480 TGGCACCAGCAGGGAAAC 60.203 61.111 0.00 0.00 44.61 2.78
3238 3486 3.512033 AACGACACTCTAGAATCAGCC 57.488 47.619 0.00 0.00 0.00 4.85
3242 3490 0.249657 CACTCTAGAATCAGCCGCCC 60.250 60.000 0.00 0.00 0.00 6.13
3244 3492 1.075226 TCTAGAATCAGCCGCCCCT 60.075 57.895 0.00 0.00 0.00 4.79
3254 3502 2.829592 CCGCCCCTATCTTCCACC 59.170 66.667 0.00 0.00 0.00 4.61
3255 3503 2.070039 CCGCCCCTATCTTCCACCA 61.070 63.158 0.00 0.00 0.00 4.17
3258 3506 1.439543 GCCCCTATCTTCCACCATCT 58.560 55.000 0.00 0.00 0.00 2.90
3274 3522 0.820871 ATCTCACCTTCAGGAGCGAC 59.179 55.000 0.00 0.00 38.94 5.19
3279 3527 1.371183 CCTTCAGGAGCGACCAACA 59.629 57.895 5.84 0.00 42.04 3.33
3286 3534 1.003580 AGGAGCGACCAACACATTCAT 59.996 47.619 5.84 0.00 42.04 2.57
3287 3535 1.812571 GGAGCGACCAACACATTCATT 59.187 47.619 0.00 0.00 38.79 2.57
3312 3560 2.158959 GGCCATTCTGTCGTCGACG 61.159 63.158 31.30 31.30 41.45 5.12
3322 3570 4.771356 CGTCGACGCCACCACGAT 62.771 66.667 26.59 0.00 38.27 3.73
3331 3579 0.602638 GCCACCACGATGTCAGACAA 60.603 55.000 7.50 0.00 0.00 3.18
3337 3585 0.037326 ACGATGTCAGACAACGCCAT 60.037 50.000 27.67 10.41 46.28 4.40
3341 3589 0.392706 TGTCAGACAACGCCATCACT 59.607 50.000 0.00 0.00 0.00 3.41
3344 3592 0.110056 CAGACAACGCCATCACTTGC 60.110 55.000 0.00 0.00 0.00 4.01
3345 3593 0.534877 AGACAACGCCATCACTTGCA 60.535 50.000 0.00 0.00 0.00 4.08
3346 3594 0.385974 GACAACGCCATCACTTGCAC 60.386 55.000 0.00 0.00 0.00 4.57
3347 3595 1.440850 CAACGCCATCACTTGCACG 60.441 57.895 0.00 0.00 0.00 5.34
3358 3606 1.154413 CTTGCACGCGTCCATCAAC 60.154 57.895 9.86 0.00 0.00 3.18
3365 3613 2.769617 CGTCCATCAACACGCGTC 59.230 61.111 9.86 0.00 0.00 5.19
3366 3614 2.769617 GTCCATCAACACGCGTCG 59.230 61.111 9.86 8.08 0.00 5.12
3367 3615 2.019951 GTCCATCAACACGCGTCGT 61.020 57.895 9.86 8.84 42.36 4.34
3368 3616 1.731613 TCCATCAACACGCGTCGTC 60.732 57.895 9.86 0.00 38.32 4.20
3369 3617 2.386491 CATCAACACGCGTCGTCG 59.614 61.111 9.86 0.00 38.32 5.12
3398 3687 0.613260 TAGATGCAACACCGCTCCTT 59.387 50.000 0.00 0.00 0.00 3.36
3412 3701 1.199615 CTCCTTCTCTTGTCCCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
3414 3703 1.132527 TCCTTCTCTTGTCCCCTCCAA 60.133 52.381 0.00 0.00 0.00 3.53
3415 3704 1.918957 CCTTCTCTTGTCCCCTCCAAT 59.081 52.381 0.00 0.00 0.00 3.16
3424 3713 1.077212 CCCCTCCAATCAGCACCTG 60.077 63.158 0.00 0.00 0.00 4.00
3440 3729 0.176680 CCTGCTACAAGACGATGCCT 59.823 55.000 0.00 0.00 0.00 4.75
3478 3794 1.721664 CCGAAGGCCTCGTCATCGTA 61.722 60.000 19.57 0.00 46.14 3.43
3491 3807 2.814919 GTCATCGTACGATCAGGGAGAT 59.185 50.000 27.24 1.77 40.48 2.75
3530 3846 4.021925 GAGCAGCCGGAACCAGGT 62.022 66.667 5.05 0.00 0.00 4.00
3536 3852 2.978824 CCGGAACCAGGTGACGAT 59.021 61.111 15.81 0.00 0.00 3.73
3537 3853 1.447838 CCGGAACCAGGTGACGATG 60.448 63.158 15.81 0.00 0.00 3.84
3581 3897 0.182775 AAGGAAACACGCCCAAGACT 59.817 50.000 0.00 0.00 0.00 3.24
3583 3899 1.566018 GGAAACACGCCCAAGACTCG 61.566 60.000 0.00 0.00 0.00 4.18
3591 3907 3.423154 CCAAGACTCGGGCGTTGC 61.423 66.667 0.00 0.00 0.00 4.17
3601 3917 3.497879 GGCGTTGCCTACCATGAC 58.502 61.111 0.00 0.00 46.69 3.06
3602 3918 1.078426 GGCGTTGCCTACCATGACT 60.078 57.895 0.00 0.00 46.69 3.41
3603 3919 1.369091 GGCGTTGCCTACCATGACTG 61.369 60.000 0.00 0.00 46.69 3.51
3604 3920 0.391130 GCGTTGCCTACCATGACTGA 60.391 55.000 0.00 0.00 0.00 3.41
3605 3921 1.645034 CGTTGCCTACCATGACTGAG 58.355 55.000 0.00 0.00 0.00 3.35
3606 3922 1.740380 CGTTGCCTACCATGACTGAGG 60.740 57.143 0.00 0.00 0.00 3.86
3607 3923 1.279271 GTTGCCTACCATGACTGAGGT 59.721 52.381 0.00 0.00 41.89 3.85
3608 3924 1.195115 TGCCTACCATGACTGAGGTC 58.805 55.000 0.00 0.00 42.42 3.85
3609 3925 0.103208 GCCTACCATGACTGAGGTCG 59.897 60.000 0.00 0.00 44.83 4.79
3610 3926 1.475403 CCTACCATGACTGAGGTCGT 58.525 55.000 0.00 0.00 44.83 4.34
3611 3927 1.405821 CCTACCATGACTGAGGTCGTC 59.594 57.143 0.00 0.00 44.83 4.20
3612 3928 2.092323 CTACCATGACTGAGGTCGTCA 58.908 52.381 0.00 6.98 44.83 4.35
3613 3929 0.603569 ACCATGACTGAGGTCGTCAC 59.396 55.000 0.00 0.00 43.44 3.67
3614 3930 0.456824 CCATGACTGAGGTCGTCACG 60.457 60.000 0.00 0.00 43.44 4.35
3615 3931 0.456824 CATGACTGAGGTCGTCACGG 60.457 60.000 0.00 0.00 43.44 4.94
3616 3932 0.608308 ATGACTGAGGTCGTCACGGA 60.608 55.000 0.00 0.00 43.44 4.69
3617 3933 0.608308 TGACTGAGGTCGTCACGGAT 60.608 55.000 0.00 0.00 44.83 4.18
3618 3934 0.526662 GACTGAGGTCGTCACGGATT 59.473 55.000 0.00 0.00 32.47 3.01
3619 3935 0.966920 ACTGAGGTCGTCACGGATTT 59.033 50.000 0.00 0.00 0.00 2.17
3620 3936 1.067776 ACTGAGGTCGTCACGGATTTC 60.068 52.381 0.00 0.00 0.00 2.17
3621 3937 0.963225 TGAGGTCGTCACGGATTTCA 59.037 50.000 0.00 0.00 0.00 2.69
3622 3938 1.548719 TGAGGTCGTCACGGATTTCAT 59.451 47.619 0.00 0.00 0.00 2.57
3623 3939 2.194271 GAGGTCGTCACGGATTTCATC 58.806 52.381 0.00 0.00 0.00 2.92
3624 3940 0.921347 GGTCGTCACGGATTTCATCG 59.079 55.000 0.00 0.00 0.00 3.84
3625 3941 0.921347 GTCGTCACGGATTTCATCGG 59.079 55.000 0.00 0.00 35.90 4.18
3626 3942 0.804544 TCGTCACGGATTTCATCGGC 60.805 55.000 0.00 0.00 33.39 5.54
3627 3943 1.081556 CGTCACGGATTTCATCGGCA 61.082 55.000 0.00 0.00 33.39 5.69
3628 3944 1.299541 GTCACGGATTTCATCGGCAT 58.700 50.000 0.00 0.00 33.39 4.40
3629 3945 1.670811 GTCACGGATTTCATCGGCATT 59.329 47.619 0.00 0.00 33.39 3.56
3630 3946 1.939934 TCACGGATTTCATCGGCATTC 59.060 47.619 0.00 0.00 33.39 2.67
3631 3947 1.670295 CACGGATTTCATCGGCATTCA 59.330 47.619 0.00 0.00 33.39 2.57
3632 3948 1.670811 ACGGATTTCATCGGCATTCAC 59.329 47.619 0.00 0.00 33.39 3.18
3633 3949 1.333169 CGGATTTCATCGGCATTCACG 60.333 52.381 0.00 0.00 0.00 4.35
3634 3950 1.597937 GGATTTCATCGGCATTCACGC 60.598 52.381 0.00 0.00 0.00 5.34
3642 3958 2.988684 GCATTCACGCCACCCCAA 60.989 61.111 0.00 0.00 0.00 4.12
3643 3959 2.569354 GCATTCACGCCACCCCAAA 61.569 57.895 0.00 0.00 0.00 3.28
3644 3960 1.288752 CATTCACGCCACCCCAAAC 59.711 57.895 0.00 0.00 0.00 2.93
3645 3961 1.906333 ATTCACGCCACCCCAAACC 60.906 57.895 0.00 0.00 0.00 3.27
3646 3962 2.648613 ATTCACGCCACCCCAAACCA 62.649 55.000 0.00 0.00 0.00 3.67
3647 3963 3.294493 CACGCCACCCCAAACCAG 61.294 66.667 0.00 0.00 0.00 4.00
3650 3966 3.305516 GCCACCCCAAACCAGCAG 61.306 66.667 0.00 0.00 0.00 4.24
3651 3967 3.305516 CCACCCCAAACCAGCAGC 61.306 66.667 0.00 0.00 0.00 5.25
3652 3968 2.203538 CACCCCAAACCAGCAGCT 60.204 61.111 0.00 0.00 0.00 4.24
3653 3969 2.203538 ACCCCAAACCAGCAGCTG 60.204 61.111 16.23 16.23 0.00 4.24
3654 3970 3.688159 CCCCAAACCAGCAGCTGC 61.688 66.667 31.53 31.53 42.49 5.25
3655 3971 3.688159 CCCAAACCAGCAGCTGCC 61.688 66.667 34.39 17.05 43.38 4.85
3656 3972 2.599578 CCAAACCAGCAGCTGCCT 60.600 61.111 34.39 19.10 43.38 4.75
3657 3973 2.649034 CAAACCAGCAGCTGCCTG 59.351 61.111 34.39 27.82 43.38 4.85
3658 3974 2.599578 AAACCAGCAGCTGCCTGG 60.600 61.111 35.67 35.67 43.38 4.45
3659 3975 3.137385 AAACCAGCAGCTGCCTGGA 62.137 57.895 40.08 0.00 43.38 3.86
3660 3976 2.436596 AAACCAGCAGCTGCCTGGAT 62.437 55.000 40.08 32.57 43.38 3.41
3661 3977 2.516460 CCAGCAGCTGCCTGGATC 60.516 66.667 35.00 12.88 43.38 3.36
3662 3978 2.516460 CAGCAGCTGCCTGGATCC 60.516 66.667 34.39 4.20 43.38 3.36
3663 3979 3.013327 AGCAGCTGCCTGGATCCA 61.013 61.111 34.39 15.27 43.38 3.41
3664 3980 2.827642 GCAGCTGCCTGGATCCAC 60.828 66.667 28.76 2.34 39.54 4.02
3665 3981 2.513204 CAGCTGCCTGGATCCACG 60.513 66.667 11.44 8.52 35.38 4.94
3666 3982 3.790437 AGCTGCCTGGATCCACGG 61.790 66.667 11.44 17.10 0.00 4.94
3667 3983 4.101448 GCTGCCTGGATCCACGGT 62.101 66.667 23.28 0.00 0.00 4.83
3668 3984 2.124983 CTGCCTGGATCCACGGTG 60.125 66.667 23.28 15.92 0.00 4.94
3669 3985 2.927856 TGCCTGGATCCACGGTGT 60.928 61.111 23.28 0.00 0.00 4.16
3670 3986 2.436646 GCCTGGATCCACGGTGTG 60.437 66.667 23.28 9.92 0.00 3.82
3671 3987 2.954684 GCCTGGATCCACGGTGTGA 61.955 63.158 23.28 4.68 35.23 3.58
3672 3988 1.219124 CCTGGATCCACGGTGTGAG 59.781 63.158 11.44 0.00 35.23 3.51
3673 3989 1.448540 CTGGATCCACGGTGTGAGC 60.449 63.158 11.44 6.83 35.23 4.26
3674 3990 2.125106 GGATCCACGGTGTGAGCC 60.125 66.667 6.95 14.92 35.23 4.70
3675 3991 2.662596 GATCCACGGTGTGAGCCA 59.337 61.111 7.45 0.00 35.23 4.75
3676 3992 1.221840 GATCCACGGTGTGAGCCAT 59.778 57.895 7.45 0.00 35.23 4.40
3677 3993 1.078214 ATCCACGGTGTGAGCCATG 60.078 57.895 7.45 0.00 35.23 3.66
3678 3994 3.434319 CCACGGTGTGAGCCATGC 61.434 66.667 7.45 0.00 35.23 4.06
3679 3995 3.434319 CACGGTGTGAGCCATGCC 61.434 66.667 0.00 0.00 35.23 4.40
3680 3996 3.952508 ACGGTGTGAGCCATGCCA 61.953 61.111 0.00 0.00 0.00 4.92
3681 3997 2.438975 CGGTGTGAGCCATGCCAT 60.439 61.111 0.00 0.00 0.00 4.40
3682 3998 2.767445 CGGTGTGAGCCATGCCATG 61.767 63.158 0.00 0.00 0.00 3.66
3683 3999 1.378911 GGTGTGAGCCATGCCATGA 60.379 57.895 6.18 0.00 0.00 3.07
3684 4000 1.660560 GGTGTGAGCCATGCCATGAC 61.661 60.000 6.18 0.00 0.00 3.06
3685 4001 1.746239 TGTGAGCCATGCCATGACG 60.746 57.895 6.18 0.00 0.00 4.35
3686 4002 1.450134 GTGAGCCATGCCATGACGA 60.450 57.895 6.18 0.00 0.00 4.20
3687 4003 0.816825 GTGAGCCATGCCATGACGAT 60.817 55.000 6.18 0.00 0.00 3.73
3688 4004 0.816421 TGAGCCATGCCATGACGATG 60.816 55.000 6.18 0.00 0.00 3.84
3689 4005 2.126417 GAGCCATGCCATGACGATGC 62.126 60.000 6.18 0.16 0.00 3.91
3690 4006 2.483197 GCCATGCCATGACGATGCA 61.483 57.895 6.18 0.00 0.00 3.96
3691 4007 1.802337 GCCATGCCATGACGATGCAT 61.802 55.000 6.18 0.00 30.85 3.96
3692 4008 0.039527 CCATGCCATGACGATGCATG 60.040 55.000 20.56 20.56 44.05 4.06
3693 4009 0.663269 CATGCCATGACGATGCATGC 60.663 55.000 17.24 11.82 43.30 4.06
3694 4010 1.104577 ATGCCATGACGATGCATGCA 61.105 50.000 25.04 25.04 43.30 3.96
3695 4011 1.008881 GCCATGACGATGCATGCAG 60.009 57.895 26.69 15.79 43.30 4.41
3696 4012 1.008881 CCATGACGATGCATGCAGC 60.009 57.895 25.69 25.69 43.30 5.25
3697 4013 1.008881 CATGACGATGCATGCAGCC 60.009 57.895 28.76 19.54 44.83 4.85
3698 4014 2.540228 ATGACGATGCATGCAGCCG 61.540 57.895 30.96 30.96 44.83 5.52
3699 4015 4.602696 GACGATGCATGCAGCCGC 62.603 66.667 31.90 23.94 44.83 6.53
3706 4022 4.260355 CATGCAGCCGCCGGATTG 62.260 66.667 7.68 5.37 37.32 2.67
3716 4032 3.727258 CCGGATTGCTGGTGGGGA 61.727 66.667 0.00 0.00 35.70 4.81
3717 4033 2.354729 CGGATTGCTGGTGGGGAA 59.645 61.111 0.00 0.00 0.00 3.97
3718 4034 2.046285 CGGATTGCTGGTGGGGAAC 61.046 63.158 0.00 0.00 0.00 3.62
3732 4048 3.154589 GGAACCAACATCCCTCGTC 57.845 57.895 0.00 0.00 0.00 4.20
3733 4049 0.739813 GGAACCAACATCCCTCGTCG 60.740 60.000 0.00 0.00 0.00 5.12
3734 4050 0.245539 GAACCAACATCCCTCGTCGA 59.754 55.000 0.00 0.00 0.00 4.20
3735 4051 0.037605 AACCAACATCCCTCGTCGAC 60.038 55.000 5.18 5.18 0.00 4.20
3736 4052 1.153628 CCAACATCCCTCGTCGACC 60.154 63.158 10.58 0.00 0.00 4.79
3737 4053 1.153628 CAACATCCCTCGTCGACCC 60.154 63.158 10.58 0.00 0.00 4.46
3738 4054 2.356780 AACATCCCTCGTCGACCCC 61.357 63.158 10.58 0.00 0.00 4.95
3739 4055 2.442272 CATCCCTCGTCGACCCCT 60.442 66.667 10.58 0.00 0.00 4.79
3740 4056 2.123812 ATCCCTCGTCGACCCCTC 60.124 66.667 10.58 0.00 0.00 4.30
3741 4057 2.992576 ATCCCTCGTCGACCCCTCA 61.993 63.158 10.58 0.00 0.00 3.86
3742 4058 2.299727 ATCCCTCGTCGACCCCTCAT 62.300 60.000 10.58 0.00 0.00 2.90
3743 4059 2.058595 CCCTCGTCGACCCCTCATT 61.059 63.158 10.58 0.00 0.00 2.57
3744 4060 1.141881 CCTCGTCGACCCCTCATTG 59.858 63.158 10.58 0.00 0.00 2.82
3745 4061 1.519455 CTCGTCGACCCCTCATTGC 60.519 63.158 10.58 0.00 0.00 3.56
3746 4062 2.225791 CTCGTCGACCCCTCATTGCA 62.226 60.000 10.58 0.00 0.00 4.08
3747 4063 2.100631 CGTCGACCCCTCATTGCAC 61.101 63.158 10.58 0.00 0.00 4.57
3748 4064 1.745489 GTCGACCCCTCATTGCACC 60.745 63.158 3.51 0.00 0.00 5.01
3749 4065 2.220586 TCGACCCCTCATTGCACCA 61.221 57.895 0.00 0.00 0.00 4.17
3750 4066 2.040544 CGACCCCTCATTGCACCAC 61.041 63.158 0.00 0.00 0.00 4.16
3751 4067 1.074775 GACCCCTCATTGCACCACA 59.925 57.895 0.00 0.00 0.00 4.17
3752 4068 1.228552 ACCCCTCATTGCACCACAC 60.229 57.895 0.00 0.00 0.00 3.82
3753 4069 2.334946 CCCCTCATTGCACCACACG 61.335 63.158 0.00 0.00 0.00 4.49
3754 4070 2.334946 CCCTCATTGCACCACACGG 61.335 63.158 0.00 0.00 38.77 4.94
3755 4071 2.562912 CTCATTGCACCACACGGC 59.437 61.111 0.00 0.00 34.57 5.68
3756 4072 1.968017 CTCATTGCACCACACGGCT 60.968 57.895 0.00 0.00 34.57 5.52
3757 4073 2.191354 CTCATTGCACCACACGGCTG 62.191 60.000 0.00 0.00 34.57 4.85
3758 4074 2.203337 ATTGCACCACACGGCTGT 60.203 55.556 0.00 0.00 34.57 4.40
3759 4075 2.260869 ATTGCACCACACGGCTGTC 61.261 57.895 0.00 0.00 34.57 3.51
3760 4076 4.927782 TGCACCACACGGCTGTCC 62.928 66.667 0.00 0.00 34.57 4.02
3761 4077 4.927782 GCACCACACGGCTGTCCA 62.928 66.667 0.00 0.00 34.57 4.02
3762 4078 2.972505 CACCACACGGCTGTCCAC 60.973 66.667 0.00 0.00 34.57 4.02
3763 4079 4.602259 ACCACACGGCTGTCCACG 62.602 66.667 0.00 0.00 34.57 4.94
3764 4080 4.602259 CCACACGGCTGTCCACGT 62.602 66.667 0.00 0.00 45.25 4.49
3768 4084 2.029073 ACGGCTGTCCACGTGAAG 59.971 61.111 19.30 12.50 42.39 3.02
3769 4085 2.338620 CGGCTGTCCACGTGAAGA 59.661 61.111 19.30 3.34 0.00 2.87
3770 4086 1.300620 CGGCTGTCCACGTGAAGAA 60.301 57.895 19.30 0.00 0.00 2.52
3771 4087 1.557443 CGGCTGTCCACGTGAAGAAC 61.557 60.000 19.30 10.01 0.00 3.01
3772 4088 1.228657 GGCTGTCCACGTGAAGAACC 61.229 60.000 19.30 9.11 0.00 3.62
3773 4089 0.531974 GCTGTCCACGTGAAGAACCA 60.532 55.000 19.30 1.23 0.00 3.67
3774 4090 1.948104 CTGTCCACGTGAAGAACCAA 58.052 50.000 19.30 0.00 0.00 3.67
3775 4091 1.597663 CTGTCCACGTGAAGAACCAAC 59.402 52.381 19.30 2.64 0.00 3.77
3776 4092 0.580104 GTCCACGTGAAGAACCAACG 59.420 55.000 19.30 0.00 0.00 4.10
3777 4093 0.460722 TCCACGTGAAGAACCAACGA 59.539 50.000 19.30 0.00 0.00 3.85
3778 4094 0.580104 CCACGTGAAGAACCAACGAC 59.420 55.000 19.30 0.00 0.00 4.34
3779 4095 1.282817 CACGTGAAGAACCAACGACA 58.717 50.000 10.90 0.00 0.00 4.35
3780 4096 1.661617 CACGTGAAGAACCAACGACAA 59.338 47.619 10.90 0.00 0.00 3.18
3781 4097 2.094575 CACGTGAAGAACCAACGACAAA 59.905 45.455 10.90 0.00 0.00 2.83
3782 4098 2.940410 ACGTGAAGAACCAACGACAAAT 59.060 40.909 0.97 0.00 0.00 2.32
3783 4099 3.001939 ACGTGAAGAACCAACGACAAATC 59.998 43.478 0.97 0.00 0.00 2.17
3784 4100 3.247648 CGTGAAGAACCAACGACAAATCT 59.752 43.478 0.00 0.00 0.00 2.40
3785 4101 4.527564 GTGAAGAACCAACGACAAATCTG 58.472 43.478 0.00 0.00 0.00 2.90
3786 4102 3.563808 TGAAGAACCAACGACAAATCTGG 59.436 43.478 0.00 0.00 0.00 3.86
3787 4103 2.504367 AGAACCAACGACAAATCTGGG 58.496 47.619 0.00 0.00 0.00 4.45
3788 4104 2.158667 AGAACCAACGACAAATCTGGGT 60.159 45.455 0.00 0.00 0.00 4.51
3789 4105 1.604604 ACCAACGACAAATCTGGGTG 58.395 50.000 0.00 0.00 0.00 4.61
3790 4106 0.881118 CCAACGACAAATCTGGGTGG 59.119 55.000 0.00 0.00 0.00 4.61
3791 4107 0.881118 CAACGACAAATCTGGGTGGG 59.119 55.000 0.00 0.00 0.00 4.61
3792 4108 0.768622 AACGACAAATCTGGGTGGGA 59.231 50.000 0.00 0.00 0.00 4.37
3793 4109 0.991920 ACGACAAATCTGGGTGGGAT 59.008 50.000 0.00 0.00 0.00 3.85
3794 4110 1.065418 ACGACAAATCTGGGTGGGATC 60.065 52.381 0.00 0.00 0.00 3.36
3795 4111 1.747206 CGACAAATCTGGGTGGGATCC 60.747 57.143 1.92 1.92 0.00 3.36
3796 4112 1.284785 GACAAATCTGGGTGGGATCCA 59.715 52.381 15.23 0.00 0.00 3.41
3808 4124 3.230284 GATCCAGATCCACGGCCA 58.770 61.111 2.24 0.00 31.76 5.36
3809 4125 1.227674 GATCCAGATCCACGGCCAC 60.228 63.158 2.24 0.00 31.76 5.01
3810 4126 2.666596 GATCCAGATCCACGGCCACC 62.667 65.000 2.24 0.00 31.76 4.61
3811 4127 3.716195 CCAGATCCACGGCCACCA 61.716 66.667 2.24 0.00 0.00 4.17
3812 4128 2.591753 CAGATCCACGGCCACCAT 59.408 61.111 2.24 0.00 0.00 3.55
3813 4129 1.524621 CAGATCCACGGCCACCATC 60.525 63.158 2.24 0.00 0.00 3.51
3814 4130 2.588877 GATCCACGGCCACCATCG 60.589 66.667 2.24 0.00 0.00 3.84
3815 4131 4.856801 ATCCACGGCCACCATCGC 62.857 66.667 2.24 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.703607 ACATTCTTTAGATCGAAGCATACCTG 59.296 38.462 0.00 0.00 0.00 4.00
50 51 8.922058 TCGTACCTACAAACATTCTTTAGATC 57.078 34.615 0.00 0.00 0.00 2.75
58 59 5.796350 AAGCATCGTACCTACAAACATTC 57.204 39.130 0.00 0.00 0.00 2.67
73 74 2.035449 TCCATCTACGGGTAAAGCATCG 59.965 50.000 0.00 0.00 0.00 3.84
83 84 5.246307 GGGATATTCTTTTCCATCTACGGG 58.754 45.833 0.00 0.00 33.43 5.28
120 122 6.494893 TGCAAAGATGATACGTAAGCTTTT 57.505 33.333 3.20 0.27 45.62 2.27
134 136 4.902443 ATGCTGAGAGAATGCAAAGATG 57.098 40.909 0.00 0.00 40.24 2.90
149 151 1.742831 GCAATTTGACGGGTATGCTGA 59.257 47.619 0.00 0.00 0.00 4.26
159 161 3.000872 CGCCAATACATTGCAATTTGACG 60.001 43.478 19.34 16.62 36.48 4.35
198 201 5.070770 AGATGATCTGATAGGATTCGTGC 57.929 43.478 0.00 0.00 0.00 5.34
205 208 5.163055 CCCCCAAAAAGATGATCTGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
278 288 3.438434 GCCTTCCACTCAACTTCTTCATC 59.562 47.826 0.00 0.00 0.00 2.92
309 319 6.634805 CATCCATCTGATAGTACCATACCAC 58.365 44.000 0.00 0.00 30.56 4.16
310 320 5.187772 GCATCCATCTGATAGTACCATACCA 59.812 44.000 0.00 0.00 30.56 3.25
345 355 3.241836 TGCGCTCGTATTTACATTGTTCG 60.242 43.478 9.73 0.00 0.00 3.95
391 401 6.371548 TGATGTTATCAAGTTGCTAGTTCACC 59.628 38.462 0.00 0.00 36.11 4.02
462 473 4.142687 CCCTGCGTTGTCATAGGTAAAAAG 60.143 45.833 0.00 0.00 0.00 2.27
468 479 1.078426 GCCCTGCGTTGTCATAGGT 60.078 57.895 0.00 0.00 0.00 3.08
483 496 1.737793 CACTGAATTTACCGACTGCCC 59.262 52.381 0.00 0.00 0.00 5.36
484 497 2.695359 TCACTGAATTTACCGACTGCC 58.305 47.619 0.00 0.00 0.00 4.85
491 504 5.007626 TGCATAGCGATTCACTGAATTTACC 59.992 40.000 5.73 0.00 31.89 2.85
494 507 5.762825 ATGCATAGCGATTCACTGAATTT 57.237 34.783 0.00 0.00 31.89 1.82
496 509 4.818005 TCAATGCATAGCGATTCACTGAAT 59.182 37.500 0.00 3.80 34.71 2.57
513 526 4.260784 CCACGGATAAAACTAGCTCAATGC 60.261 45.833 0.00 0.00 43.29 3.56
634 702 0.105593 ATAGGCATGGCTGAGTCGTG 59.894 55.000 30.53 1.05 0.00 4.35
688 756 0.850100 TGGAGTTCTTGGCCAGGAAA 59.150 50.000 29.83 13.35 0.00 3.13
711 779 1.769733 CATTTCAAACTGTGCCGTGG 58.230 50.000 0.00 0.00 0.00 4.94
714 782 1.522258 GTTGCATTTCAAACTGTGCCG 59.478 47.619 0.00 0.00 36.26 5.69
904 980 6.038825 TGTTGAACGAGGTGATTTATTTGTGT 59.961 34.615 0.00 0.00 0.00 3.72
1052 1136 1.199097 CCACACGGAACCAGCATTAAC 59.801 52.381 0.00 0.00 0.00 2.01
1053 1137 1.529226 CCACACGGAACCAGCATTAA 58.471 50.000 0.00 0.00 0.00 1.40
1250 1357 1.216710 CGGGAGCAGAGGTCTTGTC 59.783 63.158 0.00 0.00 0.00 3.18
1288 1398 2.124695 CCGGCTAACCCCTTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
1327 1437 1.775385 TGGACACCTCGCTCATGATA 58.225 50.000 0.00 0.00 0.00 2.15
1347 1457 2.124570 GGATGGCATGGTGCGTCT 60.125 61.111 3.81 0.00 46.21 4.18
1357 1467 0.249699 CGTATGCTTACCGGATGGCA 60.250 55.000 9.46 15.41 39.70 4.92
1360 1470 1.886861 GCGCGTATGCTTACCGGATG 61.887 60.000 9.46 0.00 39.65 3.51
1365 1475 2.583164 GACGGCGCGTATGCTTACC 61.583 63.158 6.90 3.05 41.37 2.85
1408 1533 2.743664 TCCATCAGAAACGTGCAATGAG 59.256 45.455 0.00 0.00 0.00 2.90
1410 1535 3.488047 GGATCCATCAGAAACGTGCAATG 60.488 47.826 6.95 0.00 0.00 2.82
1426 1551 4.731853 TGGGGAGGTGCGGATCCA 62.732 66.667 13.41 0.00 37.33 3.41
1428 1553 3.866582 CCTGGGGAGGTGCGGATC 61.867 72.222 0.00 0.00 0.00 3.36
1458 1583 1.821753 CATCTCCAGAGAAGACACCGT 59.178 52.381 0.66 0.00 41.36 4.83
1693 1846 3.260380 CCCTGCACCCATGAACAATTTAA 59.740 43.478 0.00 0.00 0.00 1.52
1703 1859 1.077212 CTTCTCCCCTGCACCCATG 60.077 63.158 0.00 0.00 0.00 3.66
1704 1860 2.988839 GCTTCTCCCCTGCACCCAT 61.989 63.158 0.00 0.00 0.00 4.00
2022 2191 7.071414 GTCAAAAATTGGCAGAAATGTTAAGC 58.929 34.615 0.00 0.00 34.79 3.09
2025 2194 5.694006 CGGTCAAAAATTGGCAGAAATGTTA 59.306 36.000 0.00 0.00 36.88 2.41
2037 2218 4.610945 AGAGCAGAAACGGTCAAAAATTG 58.389 39.130 0.00 0.00 35.83 2.32
2142 2324 2.348411 ACCTTTGTGACAGAACAGGG 57.652 50.000 13.99 7.26 33.64 4.45
2148 2330 5.872617 CGGATTATTGTACCTTTGTGACAGA 59.127 40.000 0.00 0.00 0.00 3.41
2163 2345 3.245284 ACGTGATTTCGCTCGGATTATTG 59.755 43.478 0.00 0.00 0.00 1.90
2170 2352 2.395690 GCACGTGATTTCGCTCGG 59.604 61.111 22.23 0.00 0.00 4.63
2226 2410 3.760684 ACAAGAACAAGATGGATGGAAGC 59.239 43.478 0.00 0.00 0.00 3.86
2253 2437 1.602771 GGTACTTCACCCCTCTGCC 59.397 63.158 0.00 0.00 42.07 4.85
2598 2798 0.642800 GCGAAGAGAGAACGACATGC 59.357 55.000 0.00 0.00 0.00 4.06
2602 2802 0.173708 ATGGGCGAAGAGAGAACGAC 59.826 55.000 0.00 0.00 0.00 4.34
2628 2837 3.589654 TTCCGGTCAGGCAAGCTCG 62.590 63.158 0.00 0.00 40.77 5.03
2629 2838 2.035442 GTTCCGGTCAGGCAAGCTC 61.035 63.158 0.00 0.00 40.77 4.09
2630 2839 2.032681 GTTCCGGTCAGGCAAGCT 59.967 61.111 0.00 0.00 40.77 3.74
2636 2845 1.966451 GGCTGTTGTTCCGGTCAGG 60.966 63.158 0.00 0.00 42.97 3.86
2855 3066 1.006832 AGCTACATTAAACAGCGCGG 58.993 50.000 8.83 5.83 40.29 6.46
2876 3087 4.816385 GTGATCGGATTCCAAATCAAGCTA 59.184 41.667 15.70 0.00 30.59 3.32
2878 3089 3.629398 AGTGATCGGATTCCAAATCAAGC 59.371 43.478 15.70 7.87 30.59 4.01
2921 3132 4.631813 CGAGTTATCCCTCACTTTTGGAAG 59.368 45.833 0.00 0.00 38.87 3.46
2922 3133 4.285003 TCGAGTTATCCCTCACTTTTGGAA 59.715 41.667 0.00 0.00 0.00 3.53
2923 3134 3.835978 TCGAGTTATCCCTCACTTTTGGA 59.164 43.478 0.00 0.00 0.00 3.53
2924 3135 3.933332 GTCGAGTTATCCCTCACTTTTGG 59.067 47.826 0.00 0.00 0.00 3.28
2925 3136 3.933332 GGTCGAGTTATCCCTCACTTTTG 59.067 47.826 0.00 0.00 0.00 2.44
2926 3137 3.838903 AGGTCGAGTTATCCCTCACTTTT 59.161 43.478 0.00 0.00 0.00 2.27
2927 3138 3.442076 AGGTCGAGTTATCCCTCACTTT 58.558 45.455 0.00 0.00 0.00 2.66
2928 3139 3.025262 GAGGTCGAGTTATCCCTCACTT 58.975 50.000 11.53 0.00 42.51 3.16
2929 3140 2.242708 AGAGGTCGAGTTATCCCTCACT 59.757 50.000 17.06 0.00 44.85 3.41
2930 3141 2.359531 CAGAGGTCGAGTTATCCCTCAC 59.640 54.545 17.06 0.00 44.85 3.51
2931 3142 2.656002 CAGAGGTCGAGTTATCCCTCA 58.344 52.381 17.06 0.00 44.85 3.86
2934 3145 1.112113 TGCAGAGGTCGAGTTATCCC 58.888 55.000 0.00 0.00 0.00 3.85
2955 3166 5.235305 AGAATGGTTATGTGCATCGTTTC 57.765 39.130 0.00 0.00 0.00 2.78
2958 3169 5.610398 TGATAGAATGGTTATGTGCATCGT 58.390 37.500 0.00 0.00 0.00 3.73
2971 3182 7.720442 TGAGTCACTTGAGTATGATAGAATGG 58.280 38.462 0.00 0.00 0.00 3.16
2972 3183 9.029243 GTTGAGTCACTTGAGTATGATAGAATG 57.971 37.037 0.00 0.00 0.00 2.67
2979 3190 9.856488 GTATAAAGTTGAGTCACTTGAGTATGA 57.144 33.333 0.00 0.00 37.07 2.15
2980 3191 9.862371 AGTATAAAGTTGAGTCACTTGAGTATG 57.138 33.333 0.00 0.00 37.07 2.39
2983 3194 9.298250 TCTAGTATAAAGTTGAGTCACTTGAGT 57.702 33.333 0.00 0.00 37.07 3.41
3041 3252 8.674607 GGGTCTGTTGAATAATATTTCTTTCGT 58.325 33.333 0.00 0.00 0.00 3.85
3042 3253 7.850982 CGGGTCTGTTGAATAATATTTCTTTCG 59.149 37.037 0.00 0.00 0.00 3.46
3043 3254 8.889717 TCGGGTCTGTTGAATAATATTTCTTTC 58.110 33.333 0.00 0.00 0.00 2.62
3044 3255 8.801882 TCGGGTCTGTTGAATAATATTTCTTT 57.198 30.769 0.00 0.00 0.00 2.52
3045 3256 8.980481 ATCGGGTCTGTTGAATAATATTTCTT 57.020 30.769 0.00 0.00 0.00 2.52
3050 3261 9.621629 TGTTTTATCGGGTCTGTTGAATAATAT 57.378 29.630 0.00 0.00 0.00 1.28
3059 3270 5.553123 TGTATGTGTTTTATCGGGTCTGTT 58.447 37.500 0.00 0.00 0.00 3.16
3060 3271 5.155278 TGTATGTGTTTTATCGGGTCTGT 57.845 39.130 0.00 0.00 0.00 3.41
3063 3274 6.073222 GGATCATGTATGTGTTTTATCGGGTC 60.073 42.308 0.00 0.00 0.00 4.46
3065 3276 5.762711 TGGATCATGTATGTGTTTTATCGGG 59.237 40.000 0.00 0.00 0.00 5.14
3075 3286 9.406828 GATGATTTTGAATGGATCATGTATGTG 57.593 33.333 3.06 0.00 39.81 3.21
3083 3294 8.464404 GTCAGAAAGATGATTTTGAATGGATCA 58.536 33.333 0.00 0.00 35.85 2.92
3087 3299 7.330208 GGTTGTCAGAAAGATGATTTTGAATGG 59.670 37.037 0.00 0.00 0.00 3.16
3090 3302 7.147932 TGTGGTTGTCAGAAAGATGATTTTGAA 60.148 33.333 0.00 0.00 0.00 2.69
3100 3312 3.882888 GGTGATTGTGGTTGTCAGAAAGA 59.117 43.478 0.00 0.00 32.20 2.52
3104 3316 2.092699 TGTGGTGATTGTGGTTGTCAGA 60.093 45.455 0.00 0.00 0.00 3.27
3108 3320 3.228188 AGATGTGGTGATTGTGGTTGT 57.772 42.857 0.00 0.00 0.00 3.32
3117 3329 8.843262 CATCATAAAATGTGTAGATGTGGTGAT 58.157 33.333 0.00 0.00 0.00 3.06
3132 3350 6.149973 ACGATATCAGGGCACATCATAAAATG 59.850 38.462 3.12 0.00 0.00 2.32
3133 3351 6.240894 ACGATATCAGGGCACATCATAAAAT 58.759 36.000 3.12 0.00 0.00 1.82
3134 3352 5.620206 ACGATATCAGGGCACATCATAAAA 58.380 37.500 3.12 0.00 0.00 1.52
3148 3366 9.201127 AGATGATGTGTTTTGATACGATATCAG 57.799 33.333 3.12 0.00 0.00 2.90
3153 3371 9.770097 AGATTAGATGATGTGTTTTGATACGAT 57.230 29.630 0.00 0.00 0.00 3.73
3160 3378 6.529125 GCCAACAGATTAGATGATGTGTTTTG 59.471 38.462 0.00 0.00 40.33 2.44
3165 3383 4.458397 AGGCCAACAGATTAGATGATGTG 58.542 43.478 5.01 0.00 0.00 3.21
3166 3384 4.164796 TGAGGCCAACAGATTAGATGATGT 59.835 41.667 5.01 0.00 0.00 3.06
3167 3385 4.514441 GTGAGGCCAACAGATTAGATGATG 59.486 45.833 5.01 0.00 0.00 3.07
3168 3386 4.445448 GGTGAGGCCAACAGATTAGATGAT 60.445 45.833 5.01 0.00 37.17 2.45
3202 3421 2.115910 TTTCCCTGCTGGTGCCAG 59.884 61.111 13.59 13.59 46.15 4.85
3208 3427 0.951040 GAGTGTCGTTTCCCTGCTGG 60.951 60.000 1.89 1.89 0.00 4.85
3209 3428 0.034059 AGAGTGTCGTTTCCCTGCTG 59.966 55.000 0.00 0.00 0.00 4.41
3210 3429 1.546476 CTAGAGTGTCGTTTCCCTGCT 59.454 52.381 0.00 0.00 0.00 4.24
3211 3430 1.544691 TCTAGAGTGTCGTTTCCCTGC 59.455 52.381 0.00 0.00 0.00 4.85
3212 3431 3.936372 TTCTAGAGTGTCGTTTCCCTG 57.064 47.619 0.00 0.00 0.00 4.45
3215 3434 3.860536 GCTGATTCTAGAGTGTCGTTTCC 59.139 47.826 0.00 0.00 0.00 3.13
3217 3436 3.673594 CGGCTGATTCTAGAGTGTCGTTT 60.674 47.826 0.00 0.00 0.00 3.60
3220 3468 1.862008 GCGGCTGATTCTAGAGTGTCG 60.862 57.143 0.00 0.00 0.00 4.35
3238 3486 0.035458 GATGGTGGAAGATAGGGGCG 59.965 60.000 0.00 0.00 0.00 6.13
3242 3490 3.312890 AGGTGAGATGGTGGAAGATAGG 58.687 50.000 0.00 0.00 0.00 2.57
3244 3492 4.361783 TGAAGGTGAGATGGTGGAAGATA 58.638 43.478 0.00 0.00 0.00 1.98
3254 3502 0.820226 TCGCTCCTGAAGGTGAGATG 59.180 55.000 2.60 0.00 33.67 2.90
3255 3503 0.820871 GTCGCTCCTGAAGGTGAGAT 59.179 55.000 7.89 0.00 39.12 2.75
3258 3506 1.118965 TTGGTCGCTCCTGAAGGTGA 61.119 55.000 2.60 0.00 37.07 4.02
3274 3522 4.244862 GCCTGGTAAAATGAATGTGTTGG 58.755 43.478 0.00 0.00 0.00 3.77
3279 3527 5.025453 AGAATGGCCTGGTAAAATGAATGT 58.975 37.500 3.32 0.00 0.00 2.71
3286 3534 2.224670 ACGACAGAATGGCCTGGTAAAA 60.225 45.455 3.32 0.00 46.22 1.52
3287 3535 1.349688 ACGACAGAATGGCCTGGTAAA 59.650 47.619 3.32 0.00 46.22 2.01
3312 3560 0.602638 TTGTCTGACATCGTGGTGGC 60.603 55.000 11.86 0.00 0.00 5.01
3320 3568 1.394917 GTGATGGCGTTGTCTGACATC 59.605 52.381 11.86 9.95 38.65 3.06
3322 3570 0.392706 AGTGATGGCGTTGTCTGACA 59.607 50.000 6.36 6.36 0.00 3.58
3331 3579 3.726517 GCGTGCAAGTGATGGCGT 61.727 61.111 0.59 0.00 0.00 5.68
3337 3585 2.027073 GATGGACGCGTGCAAGTGA 61.027 57.895 36.42 14.23 33.77 3.41
3341 3589 1.889573 TGTTGATGGACGCGTGCAA 60.890 52.632 36.42 19.49 33.77 4.08
3344 3592 2.469847 CGTGTTGATGGACGCGTG 59.530 61.111 20.70 0.00 45.56 5.34
3363 3611 1.346365 TCTATTGCAACAGCGACGAC 58.654 50.000 0.00 0.00 0.00 4.34
3365 3613 2.357954 CATCTATTGCAACAGCGACG 57.642 50.000 0.00 0.00 0.00 5.12
3398 3687 2.191400 CTGATTGGAGGGGACAAGAGA 58.809 52.381 0.00 0.00 0.00 3.10
3424 3713 0.175760 TGGAGGCATCGTCTTGTAGC 59.824 55.000 0.00 0.00 0.00 3.58
3427 3716 0.976641 TCTTGGAGGCATCGTCTTGT 59.023 50.000 0.00 0.00 0.00 3.16
3440 3729 1.201429 GGGCAGTTCTCCCTCTTGGA 61.201 60.000 0.00 0.00 42.41 3.53
3470 3786 2.219458 TCTCCCTGATCGTACGATGAC 58.781 52.381 33.86 20.78 34.60 3.06
3530 3846 5.276820 GCATCGTCATTTACATTCATCGTCA 60.277 40.000 0.00 0.00 0.00 4.35
3536 3852 4.940654 TGAAGGCATCGTCATTTACATTCA 59.059 37.500 0.00 0.00 0.00 2.57
3537 3853 5.484173 TGAAGGCATCGTCATTTACATTC 57.516 39.130 0.00 0.00 0.00 2.67
3585 3901 0.391130 TCAGTCATGGTAGGCAACGC 60.391 55.000 0.00 0.00 46.39 4.84
3591 3907 1.405821 GACGACCTCAGTCATGGTAGG 59.594 57.143 0.00 0.00 43.73 3.18
3592 3908 2.092323 TGACGACCTCAGTCATGGTAG 58.908 52.381 0.00 0.00 42.91 3.18
3593 3909 2.209690 TGACGACCTCAGTCATGGTA 57.790 50.000 0.00 0.00 42.91 3.25
3594 3910 3.051617 TGACGACCTCAGTCATGGT 57.948 52.632 0.00 0.00 42.91 3.55
3598 3914 0.608308 ATCCGTGACGACCTCAGTCA 60.608 55.000 6.54 0.00 45.23 3.41
3599 3915 0.526662 AATCCGTGACGACCTCAGTC 59.473 55.000 6.54 0.00 39.83 3.51
3600 3916 0.966920 AAATCCGTGACGACCTCAGT 59.033 50.000 6.54 0.00 0.00 3.41
3601 3917 1.067846 TGAAATCCGTGACGACCTCAG 60.068 52.381 6.54 0.00 0.00 3.35
3602 3918 0.963225 TGAAATCCGTGACGACCTCA 59.037 50.000 6.54 0.52 0.00 3.86
3603 3919 2.194271 GATGAAATCCGTGACGACCTC 58.806 52.381 6.54 0.00 37.38 3.85
3604 3920 1.469251 CGATGAAATCCGTGACGACCT 60.469 52.381 6.54 0.00 41.39 3.85
3605 3921 0.921347 CGATGAAATCCGTGACGACC 59.079 55.000 6.54 0.00 41.39 4.79
3606 3922 0.921347 CCGATGAAATCCGTGACGAC 59.079 55.000 6.54 0.00 41.39 4.34
3607 3923 0.804544 GCCGATGAAATCCGTGACGA 60.805 55.000 6.54 0.00 41.39 4.20
3608 3924 1.081556 TGCCGATGAAATCCGTGACG 61.082 55.000 0.00 0.00 41.39 4.35
3609 3925 1.299541 ATGCCGATGAAATCCGTGAC 58.700 50.000 0.00 0.00 41.39 3.67
3610 3926 1.939934 GAATGCCGATGAAATCCGTGA 59.060 47.619 0.00 0.00 41.39 4.35
3611 3927 1.670295 TGAATGCCGATGAAATCCGTG 59.330 47.619 0.00 0.00 41.39 4.94
3612 3928 1.670811 GTGAATGCCGATGAAATCCGT 59.329 47.619 0.00 0.00 41.39 4.69
3613 3929 1.333169 CGTGAATGCCGATGAAATCCG 60.333 52.381 0.00 0.00 41.39 4.18
3614 3930 1.597937 GCGTGAATGCCGATGAAATCC 60.598 52.381 0.00 0.00 41.39 3.01
3615 3931 1.597937 GGCGTGAATGCCGATGAAATC 60.598 52.381 0.00 0.00 46.75 2.17
3616 3932 0.381801 GGCGTGAATGCCGATGAAAT 59.618 50.000 0.00 0.00 46.75 2.17
3617 3933 1.800032 GGCGTGAATGCCGATGAAA 59.200 52.632 0.00 0.00 46.75 2.69
3618 3934 3.496711 GGCGTGAATGCCGATGAA 58.503 55.556 0.00 0.00 46.75 2.57
3625 3941 2.569354 TTTGGGGTGGCGTGAATGC 61.569 57.895 0.00 0.00 0.00 3.56
3626 3942 1.288752 GTTTGGGGTGGCGTGAATG 59.711 57.895 0.00 0.00 0.00 2.67
3627 3943 1.906333 GGTTTGGGGTGGCGTGAAT 60.906 57.895 0.00 0.00 0.00 2.57
3628 3944 2.519780 GGTTTGGGGTGGCGTGAA 60.520 61.111 0.00 0.00 0.00 3.18
3629 3945 3.783362 CTGGTTTGGGGTGGCGTGA 62.783 63.158 0.00 0.00 0.00 4.35
3630 3946 3.294493 CTGGTTTGGGGTGGCGTG 61.294 66.667 0.00 0.00 0.00 5.34
3633 3949 3.305516 CTGCTGGTTTGGGGTGGC 61.306 66.667 0.00 0.00 0.00 5.01
3634 3950 3.305516 GCTGCTGGTTTGGGGTGG 61.306 66.667 0.00 0.00 0.00 4.61
3635 3951 2.203538 AGCTGCTGGTTTGGGGTG 60.204 61.111 0.00 0.00 0.00 4.61
3636 3952 2.203538 CAGCTGCTGGTTTGGGGT 60.204 61.111 21.71 0.00 0.00 4.95
3637 3953 3.688159 GCAGCTGCTGGTTTGGGG 61.688 66.667 31.33 3.39 38.21 4.96
3638 3954 3.688159 GGCAGCTGCTGGTTTGGG 61.688 66.667 35.82 4.15 41.70 4.12
3639 3955 2.599578 AGGCAGCTGCTGGTTTGG 60.600 61.111 35.82 4.91 41.70 3.28
3640 3956 2.649034 CAGGCAGCTGCTGGTTTG 59.351 61.111 35.82 21.72 41.70 2.93
3641 3957 2.436596 ATCCAGGCAGCTGCTGGTTT 62.437 55.000 35.52 27.20 41.70 3.27
3642 3958 2.833604 GATCCAGGCAGCTGCTGGTT 62.834 60.000 35.52 31.32 41.70 3.67
3643 3959 3.336568 ATCCAGGCAGCTGCTGGT 61.337 61.111 35.52 26.50 41.70 4.00
3644 3960 2.516460 GATCCAGGCAGCTGCTGG 60.516 66.667 33.67 33.67 41.70 4.85
3645 3961 2.516460 GGATCCAGGCAGCTGCTG 60.516 66.667 35.82 28.62 41.70 4.41
3646 3962 3.013327 TGGATCCAGGCAGCTGCT 61.013 61.111 35.82 20.32 41.70 4.24
3647 3963 2.827642 GTGGATCCAGGCAGCTGC 60.828 66.667 30.88 30.88 41.14 5.25
3648 3964 2.513204 CGTGGATCCAGGCAGCTG 60.513 66.667 20.81 10.11 0.00 4.24
3649 3965 3.790437 CCGTGGATCCAGGCAGCT 61.790 66.667 25.91 0.00 0.00 4.24
3650 3966 4.101448 ACCGTGGATCCAGGCAGC 62.101 66.667 25.91 8.93 0.00 5.25
3651 3967 2.124983 CACCGTGGATCCAGGCAG 60.125 66.667 25.91 16.82 0.00 4.85
3652 3968 2.927856 ACACCGTGGATCCAGGCA 60.928 61.111 25.91 0.00 0.00 4.75
3653 3969 2.436646 CACACCGTGGATCCAGGC 60.437 66.667 25.91 10.39 0.00 4.85
3654 3970 1.219124 CTCACACCGTGGATCCAGG 59.781 63.158 24.66 24.66 33.87 4.45
3655 3971 1.448540 GCTCACACCGTGGATCCAG 60.449 63.158 16.81 7.12 33.87 3.86
3656 3972 2.662596 GCTCACACCGTGGATCCA 59.337 61.111 11.44 11.44 33.87 3.41
3657 3973 2.125106 GGCTCACACCGTGGATCC 60.125 66.667 4.20 4.20 33.87 3.36
3658 3974 1.091771 CATGGCTCACACCGTGGATC 61.092 60.000 3.03 0.00 42.13 3.36
3659 3975 1.078214 CATGGCTCACACCGTGGAT 60.078 57.895 3.03 0.00 42.13 3.41
3660 3976 2.347114 CATGGCTCACACCGTGGA 59.653 61.111 3.03 0.00 42.13 4.02
3661 3977 3.434319 GCATGGCTCACACCGTGG 61.434 66.667 3.03 0.00 45.35 4.94
3663 3979 3.272364 ATGGCATGGCTCACACCGT 62.272 57.895 21.08 0.00 0.00 4.83
3664 3980 2.438975 ATGGCATGGCTCACACCG 60.439 61.111 21.08 0.00 0.00 4.94
3665 3981 1.378911 TCATGGCATGGCTCACACC 60.379 57.895 26.15 0.00 0.00 4.16
3666 3982 1.805254 GTCATGGCATGGCTCACAC 59.195 57.895 24.17 11.50 30.66 3.82
3667 3983 1.746239 CGTCATGGCATGGCTCACA 60.746 57.895 27.61 5.36 31.27 3.58
3668 3984 0.816825 ATCGTCATGGCATGGCTCAC 60.817 55.000 27.61 16.90 31.27 3.51
3669 3985 0.816421 CATCGTCATGGCATGGCTCA 60.816 55.000 27.61 15.63 31.27 4.26
3670 3986 1.947013 CATCGTCATGGCATGGCTC 59.053 57.895 27.61 16.54 31.27 4.70
3671 3987 2.191513 GCATCGTCATGGCATGGCT 61.192 57.895 27.61 9.24 31.27 4.75
3672 3988 1.802337 ATGCATCGTCATGGCATGGC 61.802 55.000 26.15 24.06 45.80 4.40
3673 3989 2.337361 ATGCATCGTCATGGCATGG 58.663 52.632 26.15 12.13 45.80 3.66
3676 3992 1.720694 CTGCATGCATCGTCATGGCA 61.721 55.000 22.97 0.13 42.97 4.92
3677 3993 1.008881 CTGCATGCATCGTCATGGC 60.009 57.895 22.97 0.00 42.97 4.40
3678 3994 1.008881 GCTGCATGCATCGTCATGG 60.009 57.895 22.97 7.95 42.97 3.66
3679 3995 1.008881 GGCTGCATGCATCGTCATG 60.009 57.895 22.97 8.76 44.93 3.07
3680 3996 2.540228 CGGCTGCATGCATCGTCAT 61.540 57.895 22.97 0.00 45.15 3.06
3681 3997 3.197092 CGGCTGCATGCATCGTCA 61.197 61.111 22.97 0.00 45.15 4.35
3682 3998 4.602696 GCGGCTGCATGCATCGTC 62.603 66.667 30.43 22.86 45.15 4.20
3689 4005 4.260355 CAATCCGGCGGCTGCATG 62.260 66.667 23.83 11.08 45.35 4.06
3699 4015 3.280938 TTCCCCACCAGCAATCCGG 62.281 63.158 0.00 0.00 0.00 5.14
3700 4016 2.046285 GTTCCCCACCAGCAATCCG 61.046 63.158 0.00 0.00 0.00 4.18
3701 4017 1.682344 GGTTCCCCACCAGCAATCC 60.682 63.158 0.00 0.00 46.42 3.01
3702 4018 4.018409 GGTTCCCCACCAGCAATC 57.982 61.111 0.00 0.00 46.42 2.67
3709 4025 1.304962 GGGATGTTGGTTCCCCACC 60.305 63.158 0.00 0.00 46.20 4.61
3710 4026 4.434483 GGGATGTTGGTTCCCCAC 57.566 61.111 0.00 0.00 46.20 4.61
3714 4030 0.739813 CGACGAGGGATGTTGGTTCC 60.740 60.000 0.00 0.00 0.00 3.62
3715 4031 0.245539 TCGACGAGGGATGTTGGTTC 59.754 55.000 0.00 0.00 0.00 3.62
3716 4032 0.037605 GTCGACGAGGGATGTTGGTT 60.038 55.000 0.00 0.00 0.00 3.67
3717 4033 1.590147 GTCGACGAGGGATGTTGGT 59.410 57.895 0.00 0.00 0.00 3.67
3718 4034 1.153628 GGTCGACGAGGGATGTTGG 60.154 63.158 9.92 0.00 0.00 3.77
3719 4035 1.153628 GGGTCGACGAGGGATGTTG 60.154 63.158 9.92 0.00 0.00 3.33
3720 4036 2.356780 GGGGTCGACGAGGGATGTT 61.357 63.158 9.92 0.00 0.00 2.71
3721 4037 2.758737 GGGGTCGACGAGGGATGT 60.759 66.667 9.92 0.00 0.00 3.06
3722 4038 2.442272 AGGGGTCGACGAGGGATG 60.442 66.667 9.92 0.00 0.00 3.51
3723 4039 2.123812 GAGGGGTCGACGAGGGAT 60.124 66.667 9.92 0.00 0.00 3.85
3724 4040 2.509931 AATGAGGGGTCGACGAGGGA 62.510 60.000 9.92 0.00 0.00 4.20
3725 4041 2.058595 AATGAGGGGTCGACGAGGG 61.059 63.158 9.92 0.00 0.00 4.30
3726 4042 1.141881 CAATGAGGGGTCGACGAGG 59.858 63.158 9.92 0.00 0.00 4.63
3727 4043 1.519455 GCAATGAGGGGTCGACGAG 60.519 63.158 9.92 0.00 0.00 4.18
3728 4044 2.279810 TGCAATGAGGGGTCGACGA 61.280 57.895 9.92 0.00 0.00 4.20
3729 4045 2.100631 GTGCAATGAGGGGTCGACG 61.101 63.158 9.92 0.00 0.00 5.12
3730 4046 1.745489 GGTGCAATGAGGGGTCGAC 60.745 63.158 7.13 7.13 0.00 4.20
3731 4047 2.220586 TGGTGCAATGAGGGGTCGA 61.221 57.895 0.00 0.00 0.00 4.20
3732 4048 2.040544 GTGGTGCAATGAGGGGTCG 61.041 63.158 0.00 0.00 0.00 4.79
3733 4049 1.074775 TGTGGTGCAATGAGGGGTC 59.925 57.895 0.00 0.00 0.00 4.46
3734 4050 1.228552 GTGTGGTGCAATGAGGGGT 60.229 57.895 0.00 0.00 0.00 4.95
3735 4051 2.334946 CGTGTGGTGCAATGAGGGG 61.335 63.158 0.00 0.00 0.00 4.79
3736 4052 2.334946 CCGTGTGGTGCAATGAGGG 61.335 63.158 0.00 0.00 0.00 4.30
3737 4053 2.981560 GCCGTGTGGTGCAATGAGG 61.982 63.158 0.00 0.00 37.67 3.86
3738 4054 1.968017 AGCCGTGTGGTGCAATGAG 60.968 57.895 0.00 0.00 37.67 2.90
3739 4055 2.112928 AGCCGTGTGGTGCAATGA 59.887 55.556 0.00 0.00 37.67 2.57
3740 4056 2.256158 CAGCCGTGTGGTGCAATG 59.744 61.111 0.00 0.00 35.35 2.82
3741 4057 2.203337 ACAGCCGTGTGGTGCAAT 60.203 55.556 0.00 0.00 46.55 3.56
3742 4058 2.899838 GACAGCCGTGTGGTGCAA 60.900 61.111 0.00 0.00 46.55 4.08
3743 4059 4.927782 GGACAGCCGTGTGGTGCA 62.928 66.667 0.00 0.00 46.55 4.57
3744 4060 4.927782 TGGACAGCCGTGTGGTGC 62.928 66.667 0.00 0.00 46.55 5.01
3746 4062 4.602259 CGTGGACAGCCGTGTGGT 62.602 66.667 0.00 0.00 36.88 4.16
3747 4063 4.602259 ACGTGGACAGCCGTGTGG 62.602 66.667 0.00 0.00 36.88 4.17
3748 4064 3.337889 CACGTGGACAGCCGTGTG 61.338 66.667 7.95 0.00 46.87 3.82
3751 4067 2.023414 TTCTTCACGTGGACAGCCGT 62.023 55.000 17.00 0.00 37.90 5.68
3752 4068 1.300620 TTCTTCACGTGGACAGCCG 60.301 57.895 17.00 0.00 36.79 5.52
3753 4069 1.228657 GGTTCTTCACGTGGACAGCC 61.229 60.000 17.00 1.77 0.00 4.85
3754 4070 0.531974 TGGTTCTTCACGTGGACAGC 60.532 55.000 17.00 4.60 0.00 4.40
3755 4071 1.597663 GTTGGTTCTTCACGTGGACAG 59.402 52.381 17.00 9.68 0.00 3.51
3756 4072 1.658994 GTTGGTTCTTCACGTGGACA 58.341 50.000 17.00 0.00 0.00 4.02
3757 4073 0.580104 CGTTGGTTCTTCACGTGGAC 59.420 55.000 17.00 9.43 0.00 4.02
3758 4074 0.460722 TCGTTGGTTCTTCACGTGGA 59.539 50.000 17.00 5.89 0.00 4.02
3759 4075 0.580104 GTCGTTGGTTCTTCACGTGG 59.420 55.000 17.00 0.00 0.00 4.94
3760 4076 1.282817 TGTCGTTGGTTCTTCACGTG 58.717 50.000 9.94 9.94 0.00 4.49
3761 4077 2.012937 TTGTCGTTGGTTCTTCACGT 57.987 45.000 0.00 0.00 0.00 4.49
3762 4078 3.247648 AGATTTGTCGTTGGTTCTTCACG 59.752 43.478 0.00 0.00 0.00 4.35
3763 4079 4.527564 CAGATTTGTCGTTGGTTCTTCAC 58.472 43.478 0.00 0.00 0.00 3.18
3764 4080 3.563808 CCAGATTTGTCGTTGGTTCTTCA 59.436 43.478 0.00 0.00 0.00 3.02
3765 4081 3.058224 CCCAGATTTGTCGTTGGTTCTTC 60.058 47.826 0.00 0.00 0.00 2.87
3766 4082 2.884639 CCCAGATTTGTCGTTGGTTCTT 59.115 45.455 0.00 0.00 0.00 2.52
3767 4083 2.158667 ACCCAGATTTGTCGTTGGTTCT 60.159 45.455 0.00 0.00 0.00 3.01
3768 4084 2.031157 CACCCAGATTTGTCGTTGGTTC 60.031 50.000 0.00 0.00 0.00 3.62
3769 4085 1.953686 CACCCAGATTTGTCGTTGGTT 59.046 47.619 0.00 0.00 0.00 3.67
3770 4086 1.604604 CACCCAGATTTGTCGTTGGT 58.395 50.000 0.00 0.00 0.00 3.67
3771 4087 0.881118 CCACCCAGATTTGTCGTTGG 59.119 55.000 0.00 0.00 0.00 3.77
3772 4088 0.881118 CCCACCCAGATTTGTCGTTG 59.119 55.000 0.00 0.00 0.00 4.10
3773 4089 0.768622 TCCCACCCAGATTTGTCGTT 59.231 50.000 0.00 0.00 0.00 3.85
3774 4090 0.991920 ATCCCACCCAGATTTGTCGT 59.008 50.000 0.00 0.00 0.00 4.34
3775 4091 1.668419 GATCCCACCCAGATTTGTCG 58.332 55.000 0.00 0.00 0.00 4.35
3776 4092 1.284785 TGGATCCCACCCAGATTTGTC 59.715 52.381 9.90 0.00 0.00 3.18
3777 4093 1.381867 TGGATCCCACCCAGATTTGT 58.618 50.000 9.90 0.00 0.00 2.83
3791 4107 1.227674 GTGGCCGTGGATCTGGATC 60.228 63.158 0.00 2.24 37.11 3.36
3792 4108 2.746375 GGTGGCCGTGGATCTGGAT 61.746 63.158 0.00 0.00 0.00 3.41
3793 4109 3.399181 GGTGGCCGTGGATCTGGA 61.399 66.667 0.00 0.00 0.00 3.86
3794 4110 2.947938 GATGGTGGCCGTGGATCTGG 62.948 65.000 0.00 0.00 0.00 3.86
3795 4111 1.524621 GATGGTGGCCGTGGATCTG 60.525 63.158 0.00 0.00 0.00 2.90
3796 4112 2.911143 GATGGTGGCCGTGGATCT 59.089 61.111 0.00 0.00 0.00 2.75
3797 4113 2.588877 CGATGGTGGCCGTGGATC 60.589 66.667 0.00 0.00 0.00 3.36
3798 4114 4.856801 GCGATGGTGGCCGTGGAT 62.857 66.667 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.