Multiple sequence alignment - TraesCS3A01G388100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G388100 chr3A 100.000 4012 0 0 1 4012 637109114 637113125 0.000000e+00 7409.0
1 TraesCS3A01G388100 chr3A 95.735 211 8 1 460 669 547946933 547947143 4.970000e-89 339.0
2 TraesCS3A01G388100 chr3A 78.661 239 44 6 217 450 686167675 686167439 6.940000e-33 152.0
3 TraesCS3A01G388100 chr3A 78.367 245 44 8 212 450 589179551 589179792 2.500000e-32 150.0
4 TraesCS3A01G388100 chr3B 90.920 3370 155 56 747 4012 657651930 657648608 0.000000e+00 4388.0
5 TraesCS3A01G388100 chr3B 88.511 470 46 3 1 468 657697519 657697056 2.710000e-156 562.0
6 TraesCS3A01G388100 chr3B 85.211 284 29 5 3117 3395 727505627 727505352 3.050000e-71 279.0
7 TraesCS3A01G388100 chr3B 86.538 260 24 7 3181 3435 798486850 798486597 3.950000e-70 276.0
8 TraesCS3A01G388100 chr3B 94.286 35 2 0 435 469 807439247 807439281 2.000000e-03 54.7
9 TraesCS3A01G388100 chr3D 93.837 2369 71 32 1705 4012 497603474 497601120 0.000000e+00 3496.0
10 TraesCS3A01G388100 chr3D 92.259 956 36 16 714 1645 497604427 497603486 0.000000e+00 1321.0
11 TraesCS3A01G388100 chr3D 84.615 468 68 3 2 468 497604921 497604457 2.820000e-126 462.0
12 TraesCS3A01G388100 chr3D 84.158 404 35 15 3113 3510 40808779 40809159 8.190000e-97 364.0
13 TraesCS3A01G388100 chr3D 84.586 266 31 6 3175 3435 595030128 595029868 5.150000e-64 255.0
14 TraesCS3A01G388100 chr1D 86.551 461 43 9 3329 3776 348124702 348125156 1.300000e-134 490.0
15 TraesCS3A01G388100 chr1D 84.116 277 29 10 3074 3339 348124373 348124645 1.850000e-63 254.0
16 TraesCS3A01G388100 chr6B 84.454 476 54 12 3327 3788 570079812 570080281 6.110000e-123 451.0
17 TraesCS3A01G388100 chr6B 83.403 476 55 14 3327 3788 308977361 308977826 1.720000e-113 420.0
18 TraesCS3A01G388100 chr6B 98.049 205 3 1 467 670 543014519 543014315 4.930000e-94 355.0
19 TraesCS3A01G388100 chr6B 97.549 204 3 2 468 670 567760825 567760623 8.250000e-92 348.0
20 TraesCS3A01G388100 chr6B 79.079 239 43 7 217 450 581872186 581872422 1.490000e-34 158.0
21 TraesCS3A01G388100 chr5B 84.848 462 52 8 3327 3776 176793548 176793093 2.200000e-122 449.0
22 TraesCS3A01G388100 chr5B 98.068 207 3 1 465 670 170446194 170445988 3.810000e-95 359.0
23 TraesCS3A01G388100 chr5B 97.585 207 4 1 463 668 375170608 375170814 1.770000e-93 353.0
24 TraesCS3A01G388100 chr1B 84.648 469 52 11 3334 3788 177158827 177159289 2.200000e-122 449.0
25 TraesCS3A01G388100 chr1B 82.563 476 53 14 3327 3788 192674114 192674573 3.760000e-105 392.0
26 TraesCS3A01G388100 chr1B 98.049 205 3 1 467 670 95047970 95048174 4.930000e-94 355.0
27 TraesCS3A01G388100 chr1B 97.573 206 3 2 465 668 49679121 49679326 6.380000e-93 351.0
28 TraesCS3A01G388100 chr5A 84.698 464 53 12 3323 3774 73841294 73841751 7.910000e-122 448.0
29 TraesCS3A01G388100 chr5A 85.932 263 25 9 3074 3326 73840993 73841253 1.840000e-68 270.0
30 TraesCS3A01G388100 chr5A 85.556 180 25 1 290 468 315263612 315263433 1.900000e-43 187.0
31 TraesCS3A01G388100 chr5A 79.237 236 45 4 218 451 641588899 641588666 1.150000e-35 161.0
32 TraesCS3A01G388100 chr5A 78.903 237 45 5 217 450 634019285 634019051 5.370000e-34 156.0
33 TraesCS3A01G388100 chr6D 84.110 472 51 13 3319 3776 77328119 77328580 6.160000e-118 435.0
34 TraesCS3A01G388100 chr7A 98.058 206 2 2 467 670 123242801 123243006 1.370000e-94 357.0
35 TraesCS3A01G388100 chr6A 97.596 208 4 1 466 672 428668029 428667822 4.930000e-94 355.0
36 TraesCS3A01G388100 chr6A 88.961 154 13 4 3074 3224 568178717 568178565 1.900000e-43 187.0
37 TraesCS3A01G388100 chr6A 87.209 86 8 3 3256 3339 568178563 568178479 1.190000e-15 95.3
38 TraesCS3A01G388100 chr7D 82.661 248 31 5 3117 3360 180843744 180843505 4.060000e-50 209.0
39 TraesCS3A01G388100 chr2D 79.352 247 43 8 1228 1470 424036881 424036639 2.480000e-37 167.0
40 TraesCS3A01G388100 chr2D 78.261 230 45 5 1228 1453 424041669 424041441 4.180000e-30 143.0
41 TraesCS3A01G388100 chr2A 79.032 248 42 10 1228 1470 564105194 564105436 1.150000e-35 161.0
42 TraesCS3A01G388100 chr2A 78.903 237 44 5 218 450 653037387 653037621 5.370000e-34 156.0
43 TraesCS3A01G388100 chr2A 77.729 229 46 5 1229 1453 564098426 564098653 6.990000e-28 135.0
44 TraesCS3A01G388100 chr2B 78.543 247 45 8 1228 1470 498418410 498418168 5.370000e-34 156.0
45 TraesCS3A01G388100 chr2B 78.696 230 44 5 1228 1453 498427143 498426915 8.980000e-32 148.0
46 TraesCS3A01G388100 chrUn 91.743 109 7 1 3117 3223 291226215 291226107 2.500000e-32 150.0
47 TraesCS3A01G388100 chrUn 91.743 109 7 1 3117 3223 299190080 299189972 2.500000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G388100 chr3A 637109114 637113125 4011 False 7409.000000 7409 100.0000 1 4012 1 chr3A.!!$F3 4011
1 TraesCS3A01G388100 chr3B 657648608 657651930 3322 True 4388.000000 4388 90.9200 747 4012 1 chr3B.!!$R1 3265
2 TraesCS3A01G388100 chr3D 497601120 497604921 3801 True 1759.666667 3496 90.2370 2 4012 3 chr3D.!!$R2 4010
3 TraesCS3A01G388100 chr1D 348124373 348125156 783 False 372.000000 490 85.3335 3074 3776 2 chr1D.!!$F1 702
4 TraesCS3A01G388100 chr5A 73840993 73841751 758 False 359.000000 448 85.3150 3074 3774 2 chr5A.!!$F1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 681 0.035056 CTGGCCCTTAACCTCTGGTG 60.035 60.0 0.00 0.00 35.34 4.17 F
682 684 0.035343 GCCCTTAACCTCTGGTGGAC 60.035 60.0 0.00 0.00 35.34 4.02 F
869 871 0.035343 AGAGCTCCCGTTTAAAGCCC 60.035 55.0 10.93 0.00 36.69 5.19 F
1508 1556 0.100325 CACACGCAAAACAGCAAGGA 59.900 50.0 0.00 0.00 0.00 3.36 F
2665 2777 0.450583 AAGTTCATCAGCAGCGCATG 59.549 50.0 11.47 3.91 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1803 0.309302 CGACCTCCTGATCGCACTAG 59.691 60.000 0.00 0.00 0.00 2.57 R
2400 2486 2.524887 CCTAATCCGGGGGCCGTA 60.525 66.667 0.00 0.00 46.80 4.02 R
2777 2889 0.438830 CTAGCACCGCGTTGAAGAAC 59.561 55.000 8.22 0.00 0.00 3.01 R
2960 3072 0.668535 TCAGGCTATCCACGATGTCG 59.331 55.000 0.11 0.11 46.33 4.35 R
3890 4098 0.605589 AAGGTGCGAGAAGAGAGTGG 59.394 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.045708 GCATGGATCGGGTGTTGCA 61.046 57.895 0.00 0.00 0.00 4.08
49 50 1.199615 TCGGGTGTTGCAGGATCATA 58.800 50.000 0.00 0.00 0.00 2.15
100 101 5.264395 CTGAGTGGGAAAAATTATCACCCT 58.736 41.667 0.00 0.00 40.98 4.34
106 107 4.775253 GGGAAAAATTATCACCCTGACCAA 59.225 41.667 0.00 0.00 37.75 3.67
107 108 5.425217 GGGAAAAATTATCACCCTGACCAAT 59.575 40.000 0.00 0.00 37.75 3.16
113 114 0.908910 TCACCCTGACCAATGCGTAT 59.091 50.000 0.00 0.00 0.00 3.06
114 115 2.112190 TCACCCTGACCAATGCGTATA 58.888 47.619 0.00 0.00 0.00 1.47
144 145 6.739331 AAATACACCCAAAAACCTTGATGA 57.261 33.333 0.00 0.00 0.00 2.92
152 153 6.553100 ACCCAAAAACCTTGATGAAGATACAA 59.447 34.615 0.00 0.00 0.00 2.41
178 179 2.093869 CAGGGTGGATTCTGCAATTTGG 60.094 50.000 0.00 0.00 0.00 3.28
217 218 7.701539 TGAGCAATTAATGACCAATGTAGTT 57.298 32.000 0.00 0.00 0.00 2.24
251 252 2.462456 ACAATCACAGTCGCTCACAT 57.538 45.000 0.00 0.00 0.00 3.21
256 257 1.611491 TCACAGTCGCTCACATACACA 59.389 47.619 0.00 0.00 0.00 3.72
265 266 3.557185 CGCTCACATACACAAGCATACAT 59.443 43.478 0.00 0.00 34.39 2.29
266 267 4.034394 CGCTCACATACACAAGCATACATT 59.966 41.667 0.00 0.00 34.39 2.71
271 272 4.640201 ACATACACAAGCATACATTCACCC 59.360 41.667 0.00 0.00 0.00 4.61
276 277 5.131977 ACACAAGCATACATTCACCCCTATA 59.868 40.000 0.00 0.00 0.00 1.31
278 279 6.716628 CACAAGCATACATTCACCCCTATAAT 59.283 38.462 0.00 0.00 0.00 1.28
281 282 5.248477 AGCATACATTCACCCCTATAATCGT 59.752 40.000 0.00 0.00 0.00 3.73
283 284 7.125811 AGCATACATTCACCCCTATAATCGTAT 59.874 37.037 0.00 0.00 0.00 3.06
287 288 5.755409 TTCACCCCTATAATCGTATGCAT 57.245 39.130 3.79 3.79 0.00 3.96
294 295 4.093408 CCTATAATCGTATGCATGCACACC 59.907 45.833 25.37 12.63 0.00 4.16
295 296 1.748950 AATCGTATGCATGCACACCA 58.251 45.000 25.37 11.52 0.00 4.17
299 300 2.158971 TCGTATGCATGCACACCATACT 60.159 45.455 25.37 7.00 39.24 2.12
300 301 2.032636 CGTATGCATGCACACCATACTG 60.033 50.000 25.37 12.85 39.24 2.74
307 308 3.183793 TGCACACCATACTGCTATGAG 57.816 47.619 0.00 0.00 32.66 2.90
319 320 2.132740 GCTATGAGCACCTTCGAGAG 57.867 55.000 0.00 0.00 41.89 3.20
325 326 1.132262 GAGCACCTTCGAGAGACTGAG 59.868 57.143 0.00 0.00 41.84 3.35
329 330 1.027255 CCTTCGAGAGACTGAGCCGA 61.027 60.000 0.00 0.00 41.84 5.54
330 331 0.098025 CTTCGAGAGACTGAGCCGAC 59.902 60.000 0.00 0.00 41.84 4.79
341 342 1.957177 CTGAGCCGACCTAGCATCTTA 59.043 52.381 0.00 0.00 0.00 2.10
343 344 2.362397 TGAGCCGACCTAGCATCTTAAG 59.638 50.000 0.00 0.00 0.00 1.85
351 352 6.984474 CCGACCTAGCATCTTAAGATTTTACA 59.016 38.462 15.49 0.00 31.21 2.41
364 365 9.897744 CTTAAGATTTTACAAAGTCAGCATTGA 57.102 29.630 0.00 0.00 0.00 2.57
373 374 2.831597 TCAGCATTGACAGCTCACG 58.168 52.632 0.00 0.00 41.14 4.35
383 384 2.203788 AGCTCACGGTCAAGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
384 385 1.841556 AGCTCACGGTCAAGGGGAA 60.842 57.895 0.00 0.00 0.00 3.97
385 386 1.201429 AGCTCACGGTCAAGGGGAAT 61.201 55.000 0.00 0.00 0.00 3.01
386 387 1.026718 GCTCACGGTCAAGGGGAATG 61.027 60.000 0.00 0.00 0.00 2.67
401 402 2.122768 GGAATGTCTCCTCCCACTGAT 58.877 52.381 0.00 0.00 41.61 2.90
407 409 2.503356 GTCTCCTCCCACTGATGAACAT 59.497 50.000 0.00 0.00 0.00 2.71
410 412 1.293924 CTCCCACTGATGAACATCGC 58.706 55.000 9.71 0.00 40.63 4.58
417 419 1.089481 TGATGAACATCGCCGGAAGC 61.089 55.000 5.05 0.00 40.63 3.86
418 420 1.078497 ATGAACATCGCCGGAAGCA 60.078 52.632 5.05 0.00 44.04 3.91
420 422 0.176910 TGAACATCGCCGGAAGCATA 59.823 50.000 5.05 0.00 44.04 3.14
427 429 4.518970 ACATCGCCGGAAGCATAAAATAAT 59.481 37.500 5.05 0.00 44.04 1.28
429 431 5.508200 TCGCCGGAAGCATAAAATAATTT 57.492 34.783 5.05 0.00 44.04 1.82
432 434 7.481642 TCGCCGGAAGCATAAAATAATTTTAA 58.518 30.769 5.05 0.00 44.04 1.52
457 459 1.246649 ATGCGAGCACCAATGTCAAA 58.753 45.000 0.00 0.00 0.00 2.69
461 463 2.677836 GCGAGCACCAATGTCAAATCTA 59.322 45.455 0.00 0.00 0.00 1.98
462 464 3.126858 GCGAGCACCAATGTCAAATCTAA 59.873 43.478 0.00 0.00 0.00 2.10
468 470 7.168219 AGCACCAATGTCAAATCTAAGACTTA 58.832 34.615 0.00 0.00 35.81 2.24
469 471 7.335422 AGCACCAATGTCAAATCTAAGACTTAG 59.665 37.037 15.03 15.03 35.81 2.18
470 472 7.414540 GCACCAATGTCAAATCTAAGACTTAGG 60.415 40.741 19.79 6.21 35.81 2.69
471 473 7.066284 CACCAATGTCAAATCTAAGACTTAGGG 59.934 40.741 19.79 12.07 35.81 3.53
472 474 6.038714 CCAATGTCAAATCTAAGACTTAGGGC 59.961 42.308 19.79 7.86 35.81 5.19
474 476 4.534500 TGTCAAATCTAAGACTTAGGGCCA 59.466 41.667 19.79 3.49 35.81 5.36
476 478 4.783227 TCAAATCTAAGACTTAGGGCCAGT 59.217 41.667 19.79 0.00 34.00 4.00
477 479 5.250774 TCAAATCTAAGACTTAGGGCCAGTT 59.749 40.000 19.79 5.66 34.00 3.16
478 480 5.360649 AATCTAAGACTTAGGGCCAGTTC 57.639 43.478 19.79 0.00 34.00 3.01
479 481 4.062490 TCTAAGACTTAGGGCCAGTTCT 57.938 45.455 19.79 0.00 34.00 3.01
480 482 4.426704 TCTAAGACTTAGGGCCAGTTCTT 58.573 43.478 19.79 10.38 34.00 2.52
481 483 4.844655 TCTAAGACTTAGGGCCAGTTCTTT 59.155 41.667 19.79 0.98 34.00 2.52
482 484 4.455070 AAGACTTAGGGCCAGTTCTTTT 57.545 40.909 6.18 0.00 0.00 2.27
483 485 3.756117 AGACTTAGGGCCAGTTCTTTTG 58.244 45.455 6.18 0.00 0.00 2.44
484 486 3.394606 AGACTTAGGGCCAGTTCTTTTGA 59.605 43.478 6.18 0.00 0.00 2.69
485 487 3.753797 GACTTAGGGCCAGTTCTTTTGAG 59.246 47.826 6.18 0.00 0.00 3.02
486 488 2.200373 TAGGGCCAGTTCTTTTGAGC 57.800 50.000 6.18 0.00 0.00 4.26
487 489 0.185901 AGGGCCAGTTCTTTTGAGCA 59.814 50.000 6.18 0.00 31.68 4.26
488 490 1.039856 GGGCCAGTTCTTTTGAGCAA 58.960 50.000 4.39 0.00 31.68 3.91
489 491 1.620323 GGGCCAGTTCTTTTGAGCAAT 59.380 47.619 4.39 0.00 31.68 3.56
490 492 2.037641 GGGCCAGTTCTTTTGAGCAATT 59.962 45.455 4.39 0.00 31.68 2.32
491 493 3.320626 GGCCAGTTCTTTTGAGCAATTC 58.679 45.455 0.00 0.00 31.68 2.17
492 494 3.006217 GGCCAGTTCTTTTGAGCAATTCT 59.994 43.478 0.00 0.00 31.68 2.40
493 495 4.502087 GGCCAGTTCTTTTGAGCAATTCTT 60.502 41.667 0.00 0.00 31.68 2.52
494 496 4.683320 GCCAGTTCTTTTGAGCAATTCTTC 59.317 41.667 0.00 0.00 31.68 2.87
495 497 5.225642 CCAGTTCTTTTGAGCAATTCTTCC 58.774 41.667 0.00 0.00 31.68 3.46
496 498 5.221303 CCAGTTCTTTTGAGCAATTCTTCCA 60.221 40.000 0.00 0.00 31.68 3.53
497 499 5.919141 CAGTTCTTTTGAGCAATTCTTCCAG 59.081 40.000 0.00 0.00 31.68 3.86
498 500 5.829924 AGTTCTTTTGAGCAATTCTTCCAGA 59.170 36.000 0.00 0.00 31.68 3.86
499 501 6.322201 AGTTCTTTTGAGCAATTCTTCCAGAA 59.678 34.615 0.00 0.00 33.78 3.02
500 502 6.906157 TCTTTTGAGCAATTCTTCCAGAAT 57.094 33.333 0.00 0.00 46.22 2.40
508 510 2.899303 TTCTTCCAGAATTGACCCCC 57.101 50.000 0.00 0.00 0.00 5.40
509 511 2.059756 TCTTCCAGAATTGACCCCCT 57.940 50.000 0.00 0.00 0.00 4.79
510 512 1.916181 TCTTCCAGAATTGACCCCCTC 59.084 52.381 0.00 0.00 0.00 4.30
511 513 0.999712 TTCCAGAATTGACCCCCTCC 59.000 55.000 0.00 0.00 0.00 4.30
512 514 0.919289 TCCAGAATTGACCCCCTCCC 60.919 60.000 0.00 0.00 0.00 4.30
513 515 1.214305 CCAGAATTGACCCCCTCCCA 61.214 60.000 0.00 0.00 0.00 4.37
514 516 0.257039 CAGAATTGACCCCCTCCCAG 59.743 60.000 0.00 0.00 0.00 4.45
515 517 1.076705 GAATTGACCCCCTCCCAGC 60.077 63.158 0.00 0.00 0.00 4.85
516 518 1.544917 AATTGACCCCCTCCCAGCT 60.545 57.895 0.00 0.00 0.00 4.24
517 519 1.149133 AATTGACCCCCTCCCAGCTT 61.149 55.000 0.00 0.00 0.00 3.74
518 520 1.575447 ATTGACCCCCTCCCAGCTTC 61.575 60.000 0.00 0.00 0.00 3.86
519 521 2.285743 GACCCCCTCCCAGCTTCT 60.286 66.667 0.00 0.00 0.00 2.85
520 522 2.285743 ACCCCCTCCCAGCTTCTC 60.286 66.667 0.00 0.00 0.00 2.87
521 523 3.093172 CCCCCTCCCAGCTTCTCC 61.093 72.222 0.00 0.00 0.00 3.71
522 524 3.093172 CCCCTCCCAGCTTCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
523 525 2.285668 CCCTCCCAGCTTCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
524 526 2.373707 CCCTCCCAGCTTCTCCCAG 61.374 68.421 0.00 0.00 0.00 4.45
525 527 1.306482 CCTCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
526 528 0.911525 CCTCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
527 529 1.211456 CTCCCAGCTTCTCCCAGAAT 58.789 55.000 0.00 0.00 33.13 2.40
528 530 1.563410 CTCCCAGCTTCTCCCAGAATT 59.437 52.381 0.00 0.00 33.13 2.17
529 531 1.283029 TCCCAGCTTCTCCCAGAATTG 59.717 52.381 0.00 0.00 33.13 2.32
530 532 1.101331 CCAGCTTCTCCCAGAATTGC 58.899 55.000 0.00 0.00 33.13 3.56
531 533 1.101331 CAGCTTCTCCCAGAATTGCC 58.899 55.000 0.00 0.00 33.13 4.52
532 534 0.700564 AGCTTCTCCCAGAATTGCCA 59.299 50.000 0.00 0.00 33.13 4.92
533 535 0.813821 GCTTCTCCCAGAATTGCCAC 59.186 55.000 0.00 0.00 33.13 5.01
534 536 1.615384 GCTTCTCCCAGAATTGCCACT 60.615 52.381 0.00 0.00 33.13 4.00
535 537 2.800250 CTTCTCCCAGAATTGCCACTT 58.200 47.619 0.00 0.00 33.13 3.16
536 538 3.873801 GCTTCTCCCAGAATTGCCACTTA 60.874 47.826 0.00 0.00 33.13 2.24
537 539 4.335416 CTTCTCCCAGAATTGCCACTTAA 58.665 43.478 0.00 0.00 33.13 1.85
538 540 4.591321 TCTCCCAGAATTGCCACTTAAT 57.409 40.909 0.00 0.00 0.00 1.40
539 541 5.708736 TCTCCCAGAATTGCCACTTAATA 57.291 39.130 0.00 0.00 0.00 0.98
540 542 6.266131 TCTCCCAGAATTGCCACTTAATAT 57.734 37.500 0.00 0.00 0.00 1.28
541 543 6.672593 TCTCCCAGAATTGCCACTTAATATT 58.327 36.000 0.00 0.00 0.00 1.28
542 544 7.125391 TCTCCCAGAATTGCCACTTAATATTT 58.875 34.615 0.00 0.00 0.00 1.40
543 545 7.619302 TCTCCCAGAATTGCCACTTAATATTTT 59.381 33.333 0.00 0.00 0.00 1.82
544 546 8.144862 TCCCAGAATTGCCACTTAATATTTTT 57.855 30.769 0.00 0.00 0.00 1.94
577 579 8.406730 TCCTAGCTAATTAGACCTTAACTAGC 57.593 38.462 16.85 0.00 29.48 3.42
578 580 8.226112 TCCTAGCTAATTAGACCTTAACTAGCT 58.774 37.037 16.85 12.62 29.48 3.32
579 581 9.517868 CCTAGCTAATTAGACCTTAACTAGCTA 57.482 37.037 16.85 13.29 29.48 3.32
581 583 8.411991 AGCTAATTAGACCTTAACTAGCTAGG 57.588 38.462 24.35 11.75 35.14 3.02
582 584 8.226112 AGCTAATTAGACCTTAACTAGCTAGGA 58.774 37.037 24.35 9.48 33.21 2.94
583 585 8.858094 GCTAATTAGACCTTAACTAGCTAGGAA 58.142 37.037 24.35 16.07 33.21 3.36
587 589 8.605325 TTAGACCTTAACTAGCTAGGAATTGT 57.395 34.615 24.35 14.92 33.21 2.71
588 590 9.705103 TTAGACCTTAACTAGCTAGGAATTGTA 57.295 33.333 24.35 8.34 33.21 2.41
589 591 8.605325 AGACCTTAACTAGCTAGGAATTGTAA 57.395 34.615 24.35 10.98 33.21 2.41
590 592 9.043548 AGACCTTAACTAGCTAGGAATTGTAAA 57.956 33.333 24.35 6.07 33.21 2.01
591 593 9.662947 GACCTTAACTAGCTAGGAATTGTAAAA 57.337 33.333 24.35 1.45 33.21 1.52
616 618 9.657419 AAAAATATTAAGTGGCAATTCTGGAAG 57.343 29.630 2.32 0.00 0.00 3.46
617 619 8.593945 AAATATTAAGTGGCAATTCTGGAAGA 57.406 30.769 2.32 0.00 44.68 2.87
626 628 4.998839 TCTGGAAGAAGCTGGGGA 57.001 55.556 0.00 0.00 42.31 4.81
627 629 2.689073 TCTGGAAGAAGCTGGGGAG 58.311 57.895 0.00 0.00 42.31 4.30
628 630 0.911525 TCTGGAAGAAGCTGGGGAGG 60.912 60.000 0.00 0.00 42.31 4.30
629 631 1.919600 CTGGAAGAAGCTGGGGAGGG 61.920 65.000 0.00 0.00 34.07 4.30
630 632 2.684499 GGAAGAAGCTGGGGAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
631 633 2.615288 AAGAAGCTGGGGAGGGGG 60.615 66.667 0.00 0.00 0.00 5.40
632 634 3.523681 AAGAAGCTGGGGAGGGGGT 62.524 63.158 0.00 0.00 0.00 4.95
633 635 3.412408 GAAGCTGGGGAGGGGGTC 61.412 72.222 0.00 0.00 0.00 4.46
634 636 4.285790 AAGCTGGGGAGGGGGTCA 62.286 66.667 0.00 0.00 0.00 4.02
635 637 3.829311 AAGCTGGGGAGGGGGTCAA 62.829 63.158 0.00 0.00 0.00 3.18
636 638 3.023735 GCTGGGGAGGGGGTCAAT 61.024 66.667 0.00 0.00 0.00 2.57
637 639 2.626467 GCTGGGGAGGGGGTCAATT 61.626 63.158 0.00 0.00 0.00 2.32
638 640 1.615262 CTGGGGAGGGGGTCAATTC 59.385 63.158 0.00 0.00 0.00 2.17
639 641 0.921256 CTGGGGAGGGGGTCAATTCT 60.921 60.000 0.00 0.00 0.00 2.40
640 642 1.214305 TGGGGAGGGGGTCAATTCTG 61.214 60.000 0.00 0.00 0.00 3.02
641 643 1.615262 GGGAGGGGGTCAATTCTGG 59.385 63.158 0.00 0.00 0.00 3.86
642 644 1.615262 GGAGGGGGTCAATTCTGGG 59.385 63.158 0.00 0.00 0.00 4.45
643 645 0.919289 GGAGGGGGTCAATTCTGGGA 60.919 60.000 0.00 0.00 0.00 4.37
644 646 0.548510 GAGGGGGTCAATTCTGGGAG 59.451 60.000 0.00 0.00 0.00 4.30
645 647 0.121197 AGGGGGTCAATTCTGGGAGA 59.879 55.000 0.00 0.00 0.00 3.71
646 648 0.999712 GGGGGTCAATTCTGGGAGAA 59.000 55.000 0.00 0.00 38.78 2.87
647 649 1.570979 GGGGGTCAATTCTGGGAGAAT 59.429 52.381 0.00 0.00 46.22 2.40
660 662 3.319137 GGGAGAATTGCCCAAAAGAAC 57.681 47.619 7.89 0.00 45.31 3.01
661 663 2.899900 GGGAGAATTGCCCAAAAGAACT 59.100 45.455 7.89 0.00 45.31 3.01
662 664 3.306294 GGGAGAATTGCCCAAAAGAACTG 60.306 47.826 7.89 0.00 45.31 3.16
663 665 3.306294 GGAGAATTGCCCAAAAGAACTGG 60.306 47.826 0.00 0.00 0.00 4.00
664 666 2.037641 AGAATTGCCCAAAAGAACTGGC 59.962 45.455 0.00 0.00 44.27 4.85
665 667 0.686789 ATTGCCCAAAAGAACTGGCC 59.313 50.000 0.00 0.00 43.35 5.36
666 668 1.406860 TTGCCCAAAAGAACTGGCCC 61.407 55.000 0.00 0.00 43.35 5.80
667 669 1.533994 GCCCAAAAGAACTGGCCCT 60.534 57.895 0.00 0.00 37.94 5.19
668 670 1.121407 GCCCAAAAGAACTGGCCCTT 61.121 55.000 0.00 0.00 37.94 3.95
669 671 1.825641 GCCCAAAAGAACTGGCCCTTA 60.826 52.381 0.00 0.00 37.94 2.69
670 672 2.604139 CCCAAAAGAACTGGCCCTTAA 58.396 47.619 0.00 0.00 32.10 1.85
671 673 2.299013 CCCAAAAGAACTGGCCCTTAAC 59.701 50.000 0.00 0.00 32.10 2.01
672 674 2.299013 CCAAAAGAACTGGCCCTTAACC 59.701 50.000 0.00 0.00 0.00 2.85
673 675 3.230976 CAAAAGAACTGGCCCTTAACCT 58.769 45.455 0.00 0.00 0.00 3.50
674 676 2.881111 AAGAACTGGCCCTTAACCTC 57.119 50.000 0.00 0.00 0.00 3.85
675 677 2.046280 AGAACTGGCCCTTAACCTCT 57.954 50.000 0.00 0.00 0.00 3.69
676 678 1.630878 AGAACTGGCCCTTAACCTCTG 59.369 52.381 0.00 0.00 0.00 3.35
677 679 0.698818 AACTGGCCCTTAACCTCTGG 59.301 55.000 0.00 0.00 0.00 3.86
678 680 0.475828 ACTGGCCCTTAACCTCTGGT 60.476 55.000 0.00 0.00 37.65 4.00
679 681 0.035056 CTGGCCCTTAACCTCTGGTG 60.035 60.000 0.00 0.00 35.34 4.17
680 682 1.303282 GGCCCTTAACCTCTGGTGG 59.697 63.158 0.00 0.00 35.34 4.61
681 683 1.205460 GGCCCTTAACCTCTGGTGGA 61.205 60.000 0.00 0.00 35.34 4.02
682 684 0.035343 GCCCTTAACCTCTGGTGGAC 60.035 60.000 0.00 0.00 35.34 4.02
683 685 0.618981 CCCTTAACCTCTGGTGGACC 59.381 60.000 0.00 0.00 35.34 4.46
684 686 0.249398 CCTTAACCTCTGGTGGACCG 59.751 60.000 0.00 0.00 35.34 4.79
685 687 1.263356 CTTAACCTCTGGTGGACCGA 58.737 55.000 0.00 0.00 35.34 4.69
689 691 0.252284 ACCTCTGGTGGACCGAGAAT 60.252 55.000 15.12 4.82 38.23 2.40
694 696 1.191535 TGGTGGACCGAGAATACCAG 58.808 55.000 0.00 0.00 36.56 4.00
695 697 1.192428 GGTGGACCGAGAATACCAGT 58.808 55.000 0.00 0.00 32.89 4.00
701 703 3.833070 GGACCGAGAATACCAGTATCCAT 59.167 47.826 0.00 0.00 0.00 3.41
705 707 4.283467 CCGAGAATACCAGTATCCATCCAA 59.717 45.833 0.00 0.00 0.00 3.53
706 708 5.221641 CCGAGAATACCAGTATCCATCCAAA 60.222 44.000 0.00 0.00 0.00 3.28
707 709 6.467677 CGAGAATACCAGTATCCATCCAAAT 58.532 40.000 0.00 0.00 0.00 2.32
708 710 7.310423 CCGAGAATACCAGTATCCATCCAAATA 60.310 40.741 0.00 0.00 0.00 1.40
709 711 8.260818 CGAGAATACCAGTATCCATCCAAATAT 58.739 37.037 0.00 0.00 0.00 1.28
722 724 8.463930 TCCATCCAAATATAGATTGGTTCAAC 57.536 34.615 15.90 0.00 46.05 3.18
786 788 1.570857 ATCCGAACCCTGCCCAATGA 61.571 55.000 0.00 0.00 0.00 2.57
821 823 1.178534 AACCTGGAATGCCGGTGTTG 61.179 55.000 1.90 0.00 39.76 3.33
855 857 1.190833 CCGGCCCTATCATCAGAGCT 61.191 60.000 0.00 0.00 0.00 4.09
858 860 0.612744 GCCCTATCATCAGAGCTCCC 59.387 60.000 10.93 0.00 0.00 4.30
867 869 2.094762 TCAGAGCTCCCGTTTAAAGC 57.905 50.000 10.93 0.00 36.27 3.51
868 870 1.087501 CAGAGCTCCCGTTTAAAGCC 58.912 55.000 10.93 0.00 36.69 4.35
869 871 0.035343 AGAGCTCCCGTTTAAAGCCC 60.035 55.000 10.93 0.00 36.69 5.19
870 872 0.322187 GAGCTCCCGTTTAAAGCCCA 60.322 55.000 0.87 0.00 36.69 5.36
871 873 0.322546 AGCTCCCGTTTAAAGCCCAG 60.323 55.000 0.00 0.00 36.69 4.45
928 931 4.280019 AAACCCCCGTCCTGGTGC 62.280 66.667 0.00 0.00 34.34 5.01
933 937 2.671070 CCCGTCCTGGTGCTTCAT 59.329 61.111 0.00 0.00 35.15 2.57
934 938 1.002134 CCCGTCCTGGTGCTTCATT 60.002 57.895 0.00 0.00 35.15 2.57
935 939 1.308069 CCCGTCCTGGTGCTTCATTG 61.308 60.000 0.00 0.00 35.15 2.82
936 940 1.503542 CGTCCTGGTGCTTCATTGC 59.496 57.895 0.00 0.00 0.00 3.56
937 941 1.885871 GTCCTGGTGCTTCATTGCC 59.114 57.895 0.00 0.00 0.00 4.52
966 974 1.606601 CGTCCCTCTGACTCCCACA 60.607 63.158 0.00 0.00 42.13 4.17
970 978 2.294078 CCTCTGACTCCCACACCCC 61.294 68.421 0.00 0.00 0.00 4.95
1106 1129 1.068250 CGCCCCTCCTCTCGATTTC 59.932 63.158 0.00 0.00 0.00 2.17
1107 1130 1.448069 GCCCCTCCTCTCGATTTCC 59.552 63.158 0.00 0.00 0.00 3.13
1135 1158 2.422127 CTGGTTTATAGGGGCGTTTGTG 59.578 50.000 0.00 0.00 0.00 3.33
1172 1195 1.072331 CACGATTATTCCTCCTGGGGG 59.928 57.143 6.15 6.15 35.33 5.40
1173 1196 1.345112 ACGATTATTCCTCCTGGGGGT 60.345 52.381 13.53 0.00 35.33 4.95
1174 1197 1.774856 CGATTATTCCTCCTGGGGGTT 59.225 52.381 13.53 4.21 35.33 4.11
1217 1240 2.914908 CGGGGGCGGTCTTTGTTTG 61.915 63.158 0.00 0.00 0.00 2.93
1497 1545 0.249868 CTCTGTTCCTCCACACGCAA 60.250 55.000 0.00 0.00 0.00 4.85
1499 1547 1.021202 CTGTTCCTCCACACGCAAAA 58.979 50.000 0.00 0.00 0.00 2.44
1503 1551 1.008538 CCTCCACACGCAAAACAGC 60.009 57.895 0.00 0.00 0.00 4.40
1507 1555 0.871163 CCACACGCAAAACAGCAAGG 60.871 55.000 0.00 0.00 0.00 3.61
1508 1556 0.100325 CACACGCAAAACAGCAAGGA 59.900 50.000 0.00 0.00 0.00 3.36
1509 1557 1.032014 ACACGCAAAACAGCAAGGAT 58.968 45.000 0.00 0.00 0.00 3.24
1695 1743 4.806247 CCTCCTCATCACGAATCAAACTAC 59.194 45.833 0.00 0.00 0.00 2.73
1696 1744 4.755411 TCCTCATCACGAATCAAACTACC 58.245 43.478 0.00 0.00 0.00 3.18
1698 1746 4.935205 CCTCATCACGAATCAAACTACCAA 59.065 41.667 0.00 0.00 0.00 3.67
1700 1748 6.402550 CCTCATCACGAATCAAACTACCAAAG 60.403 42.308 0.00 0.00 0.00 2.77
1701 1749 5.995282 TCATCACGAATCAAACTACCAAAGT 59.005 36.000 0.00 0.00 41.49 2.66
1702 1750 7.156000 TCATCACGAATCAAACTACCAAAGTA 58.844 34.615 0.00 0.00 37.50 2.24
1703 1751 6.774354 TCACGAATCAAACTACCAAAGTAC 57.226 37.500 0.00 0.00 37.50 2.73
1936 2001 0.454600 TCATGTCGTTCGCCTACTCC 59.545 55.000 0.00 0.00 0.00 3.85
2114 2179 3.776969 AGTGCTCATTGAGATCCAGGTAA 59.223 43.478 17.87 0.00 0.00 2.85
2157 2224 9.436957 TTCAGATACTCAAACTCCAGAAATTAC 57.563 33.333 0.00 0.00 0.00 1.89
2210 2296 7.973388 TGTTTTTGTTTCAGAACATTACTCCAG 59.027 33.333 0.00 0.00 44.71 3.86
2214 2300 5.163248 TGTTTCAGAACATTACTCCAGGTGA 60.163 40.000 0.00 0.00 40.71 4.02
2400 2486 2.044946 GCTCCCGGCAACATCCTT 60.045 61.111 0.00 0.00 41.35 3.36
2466 2552 0.842030 TGTGCCTCATCCTCCACCTT 60.842 55.000 0.00 0.00 0.00 3.50
2488 2574 0.839277 TGGGGCATATCAGGTCAGTG 59.161 55.000 0.00 0.00 0.00 3.66
2545 2631 7.112122 TCCATAATATTGACAAGCTGAACTGT 58.888 34.615 0.00 0.00 0.00 3.55
2547 2633 7.912250 CCATAATATTGACAAGCTGAACTGTTC 59.088 37.037 13.49 13.49 0.00 3.18
2548 2634 6.882610 AATATTGACAAGCTGAACTGTTCA 57.117 33.333 20.95 20.95 38.17 3.18
2550 2636 4.355543 TTGACAAGCTGAACTGTTCAAC 57.644 40.909 22.25 18.30 39.58 3.18
2552 2638 3.755905 TGACAAGCTGAACTGTTCAACAA 59.244 39.130 22.25 1.74 39.58 2.83
2553 2639 4.096732 ACAAGCTGAACTGTTCAACAAC 57.903 40.909 22.25 12.79 39.58 3.32
2554 2640 3.758554 ACAAGCTGAACTGTTCAACAACT 59.241 39.130 22.25 14.53 39.58 3.16
2555 2641 4.218417 ACAAGCTGAACTGTTCAACAACTT 59.782 37.500 22.25 18.53 39.58 2.66
2568 2680 6.533367 TGTTCAACAACTTGGAACTAAAATGC 59.467 34.615 10.46 0.00 33.17 3.56
2660 2772 1.198637 GACACCAAGTTCATCAGCAGC 59.801 52.381 0.00 0.00 0.00 5.25
2665 2777 0.450583 AAGTTCATCAGCAGCGCATG 59.549 50.000 11.47 3.91 0.00 4.06
2777 2889 1.603802 GTGGTGGCAATGATGATACCG 59.396 52.381 0.00 0.00 37.07 4.02
2978 3090 0.941463 GCGACATCGTGGATAGCCTG 60.941 60.000 0.00 0.00 42.22 4.85
3252 3376 9.841295 AAATAGGAAGTACTGTGTTAAAGACAA 57.159 29.630 0.00 0.00 40.65 3.18
3310 3434 3.746492 GTCGAAATTGGACTACACTGCTT 59.254 43.478 0.77 0.00 0.00 3.91
3331 3523 7.660112 TGCTTTGTTTCATCATTATCACAGTT 58.340 30.769 0.00 0.00 0.00 3.16
3347 3539 7.891183 ATCACAGTTCAGTACAGTAAATCAC 57.109 36.000 0.00 0.00 0.00 3.06
3433 3626 2.700897 ACATGACCTATGAGGCTACCAC 59.299 50.000 0.00 0.00 39.63 4.16
3436 3629 2.024369 TGACCTATGAGGCTACCACAGA 60.024 50.000 0.00 0.00 39.63 3.41
3437 3630 2.625790 GACCTATGAGGCTACCACAGAG 59.374 54.545 0.00 0.00 39.63 3.35
3440 3633 1.341156 ATGAGGCTACCACAGAGGCC 61.341 60.000 0.00 0.00 43.14 5.19
3448 3641 0.471971 ACCACAGAGGCCACTACACT 60.472 55.000 5.01 0.00 43.14 3.55
3455 3648 1.205893 GAGGCCACTACACTTCCAGAG 59.794 57.143 5.01 0.00 0.00 3.35
3471 3664 7.770897 CACTTCCAGAGTATTATTAACAGCCTT 59.229 37.037 0.00 0.00 36.65 4.35
3591 3795 6.349363 GGTGGCATCTTACAAAGAAAAGGTAG 60.349 42.308 0.00 0.00 41.63 3.18
3612 3816 7.720074 AGGTAGCCTGCTTTTACTTATTATTCC 59.280 37.037 0.00 0.00 29.57 3.01
3736 3942 4.280929 ACAAGGGCAATGTTAAAGACCTTC 59.719 41.667 0.00 0.00 34.83 3.46
3884 4090 1.542030 CTCTGACGGCACAAGACTAGT 59.458 52.381 0.00 0.00 0.00 2.57
3886 4094 2.364324 TCTGACGGCACAAGACTAGTTT 59.636 45.455 0.00 0.00 0.00 2.66
3890 4098 1.389106 CGGCACAAGACTAGTTTACGC 59.611 52.381 0.00 0.00 0.00 4.42
3905 4113 0.958876 TACGCCACTCTCTTCTCGCA 60.959 55.000 0.00 0.00 0.00 5.10
3968 4176 7.324178 AGCTGACGTAAGACTTAAATCTTCAT 58.676 34.615 3.33 0.00 39.65 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.459899 ATAAGTCTCCGCATGCGACA 59.540 50.000 39.90 24.40 42.83 4.35
41 42 3.709653 TGCCCGAGTTAAGTTATGATCCT 59.290 43.478 0.00 0.00 0.00 3.24
49 50 0.955919 GCAGCTGCCCGAGTTAAGTT 60.956 55.000 28.76 0.00 34.31 2.66
81 82 4.159693 GGTCAGGGTGATAATTTTTCCCAC 59.840 45.833 10.77 0.00 40.48 4.61
84 85 5.993748 TTGGTCAGGGTGATAATTTTTCC 57.006 39.130 0.00 0.00 0.00 3.13
86 87 5.624281 CGCATTGGTCAGGGTGATAATTTTT 60.624 40.000 0.00 0.00 0.00 1.94
107 108 9.999660 TTTGGGTGTATTTTATATCTATACGCA 57.000 29.630 13.11 0.00 37.12 5.24
130 131 9.865321 ATGATTGTATCTTCATCAAGGTTTTTG 57.135 29.630 0.00 0.00 0.00 2.44
144 145 5.919348 ATCCACCCTGATGATTGTATCTT 57.081 39.130 0.00 0.00 0.00 2.40
152 153 1.848388 TGCAGAATCCACCCTGATGAT 59.152 47.619 0.00 0.00 32.37 2.45
161 162 5.391312 AAGTACCAAATTGCAGAATCCAC 57.609 39.130 0.00 0.00 0.00 4.02
235 236 2.231235 TGTGTATGTGAGCGACTGTGAT 59.769 45.455 0.00 0.00 0.00 3.06
238 239 2.677199 CTTGTGTATGTGAGCGACTGT 58.323 47.619 0.00 0.00 0.00 3.55
244 245 5.065090 TGAATGTATGCTTGTGTATGTGAGC 59.935 40.000 0.00 0.00 35.74 4.26
251 252 3.265737 AGGGGTGAATGTATGCTTGTGTA 59.734 43.478 0.00 0.00 0.00 2.90
256 257 6.173339 CGATTATAGGGGTGAATGTATGCTT 58.827 40.000 0.00 0.00 0.00 3.91
265 266 5.487433 CATGCATACGATTATAGGGGTGAA 58.513 41.667 0.00 0.00 0.00 3.18
266 267 4.622933 GCATGCATACGATTATAGGGGTGA 60.623 45.833 14.21 0.00 0.00 4.02
271 272 4.093408 GGTGTGCATGCATACGATTATAGG 59.907 45.833 32.61 0.00 38.65 2.57
276 277 1.748950 TGGTGTGCATGCATACGATT 58.251 45.000 32.61 0.00 38.65 3.34
278 279 2.158971 AGTATGGTGTGCATGCATACGA 60.159 45.455 32.61 30.73 38.65 3.43
281 282 1.948834 GCAGTATGGTGTGCATGCATA 59.051 47.619 25.64 19.63 39.62 3.14
283 284 2.182496 GCAGTATGGTGTGCATGCA 58.818 52.632 18.46 18.46 39.62 3.96
300 301 1.678627 TCTCTCGAAGGTGCTCATAGC 59.321 52.381 0.00 0.00 42.82 2.97
307 308 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
313 314 1.745864 GGTCGGCTCAGTCTCTCGA 60.746 63.158 0.00 0.00 0.00 4.04
319 320 0.031449 GATGCTAGGTCGGCTCAGTC 59.969 60.000 0.00 0.00 0.00 3.51
325 326 3.669251 ATCTTAAGATGCTAGGTCGGC 57.331 47.619 17.26 0.00 32.68 5.54
329 330 9.740710 ACTTTGTAAAATCTTAAGATGCTAGGT 57.259 29.630 18.61 9.74 34.49 3.08
358 359 0.950555 TGACCGTGAGCTGTCAATGC 60.951 55.000 2.31 0.00 36.22 3.56
361 362 0.249868 CCTTGACCGTGAGCTGTCAA 60.250 55.000 14.53 14.53 43.30 3.18
364 365 2.743718 CCCTTGACCGTGAGCTGT 59.256 61.111 0.00 0.00 0.00 4.40
365 366 2.046892 CCCCTTGACCGTGAGCTG 60.047 66.667 0.00 0.00 0.00 4.24
366 367 1.201429 ATTCCCCTTGACCGTGAGCT 61.201 55.000 0.00 0.00 0.00 4.09
367 368 1.026718 CATTCCCCTTGACCGTGAGC 61.027 60.000 0.00 0.00 0.00 4.26
373 374 3.884226 GGAGACATTCCCCTTGACC 57.116 57.895 0.00 0.00 40.37 4.02
383 384 2.837947 TCATCAGTGGGAGGAGACATT 58.162 47.619 0.00 0.00 31.61 2.71
384 385 2.503356 GTTCATCAGTGGGAGGAGACAT 59.497 50.000 0.00 0.00 37.65 3.06
385 386 1.902508 GTTCATCAGTGGGAGGAGACA 59.097 52.381 0.00 0.00 37.65 3.41
386 387 1.902508 TGTTCATCAGTGGGAGGAGAC 59.097 52.381 0.00 0.00 37.65 3.36
401 402 0.176910 TATGCTTCCGGCGATGTTCA 59.823 50.000 9.30 0.00 45.43 3.18
407 409 5.508200 AAATTATTTTATGCTTCCGGCGA 57.492 34.783 9.30 0.00 45.43 5.54
427 429 7.386299 ACATTGGTGCTCGCATTATTTTTAAAA 59.614 29.630 0.00 0.00 0.00 1.52
429 431 6.393990 ACATTGGTGCTCGCATTATTTTTAA 58.606 32.000 0.00 0.00 0.00 1.52
432 434 4.082300 TGACATTGGTGCTCGCATTATTTT 60.082 37.500 0.00 0.00 0.00 1.82
440 442 1.470098 AGATTTGACATTGGTGCTCGC 59.530 47.619 0.00 0.00 0.00 5.03
442 444 5.645497 AGTCTTAGATTTGACATTGGTGCTC 59.355 40.000 0.00 0.00 35.81 4.26
444 446 5.886960 AGTCTTAGATTTGACATTGGTGC 57.113 39.130 0.00 0.00 35.81 5.01
447 449 6.038714 GCCCTAAGTCTTAGATTTGACATTGG 59.961 42.308 19.42 9.68 35.20 3.16
457 459 4.625963 AGAACTGGCCCTAAGTCTTAGAT 58.374 43.478 19.42 0.00 35.20 1.98
461 463 4.141251 TCAAAAGAACTGGCCCTAAGTCTT 60.141 41.667 0.00 0.00 0.00 3.01
462 464 3.394606 TCAAAAGAACTGGCCCTAAGTCT 59.605 43.478 0.00 0.00 0.00 3.24
468 470 0.185901 TGCTCAAAAGAACTGGCCCT 59.814 50.000 0.00 0.00 0.00 5.19
469 471 1.039856 TTGCTCAAAAGAACTGGCCC 58.960 50.000 0.00 0.00 0.00 5.80
470 472 3.006217 AGAATTGCTCAAAAGAACTGGCC 59.994 43.478 0.00 0.00 0.00 5.36
471 473 4.248691 AGAATTGCTCAAAAGAACTGGC 57.751 40.909 0.00 0.00 0.00 4.85
472 474 5.221303 TGGAAGAATTGCTCAAAAGAACTGG 60.221 40.000 0.00 0.00 37.31 4.00
474 476 5.829924 TCTGGAAGAATTGCTCAAAAGAACT 59.170 36.000 0.00 0.00 42.31 3.01
490 492 1.916181 GAGGGGGTCAATTCTGGAAGA 59.084 52.381 0.00 0.00 44.68 2.87
491 493 1.064389 GGAGGGGGTCAATTCTGGAAG 60.064 57.143 0.00 0.00 0.00 3.46
492 494 0.999712 GGAGGGGGTCAATTCTGGAA 59.000 55.000 0.00 0.00 0.00 3.53
493 495 0.919289 GGGAGGGGGTCAATTCTGGA 60.919 60.000 0.00 0.00 0.00 3.86
494 496 1.214305 TGGGAGGGGGTCAATTCTGG 61.214 60.000 0.00 0.00 0.00 3.86
495 497 0.257039 CTGGGAGGGGGTCAATTCTG 59.743 60.000 0.00 0.00 0.00 3.02
496 498 1.575447 GCTGGGAGGGGGTCAATTCT 61.575 60.000 0.00 0.00 0.00 2.40
497 499 1.076705 GCTGGGAGGGGGTCAATTC 60.077 63.158 0.00 0.00 0.00 2.17
498 500 1.149133 AAGCTGGGAGGGGGTCAATT 61.149 55.000 0.00 0.00 0.00 2.32
499 501 1.544917 AAGCTGGGAGGGGGTCAAT 60.545 57.895 0.00 0.00 0.00 2.57
500 502 2.121506 AAGCTGGGAGGGGGTCAA 60.122 61.111 0.00 0.00 0.00 3.18
501 503 2.610859 GAAGCTGGGAGGGGGTCA 60.611 66.667 0.00 0.00 0.00 4.02
502 504 2.285743 AGAAGCTGGGAGGGGGTC 60.286 66.667 0.00 0.00 0.00 4.46
503 505 2.285743 GAGAAGCTGGGAGGGGGT 60.286 66.667 0.00 0.00 0.00 4.95
504 506 3.093172 GGAGAAGCTGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
505 507 3.093172 GGGAGAAGCTGGGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
506 508 2.285668 TGGGAGAAGCTGGGAGGG 60.286 66.667 0.00 0.00 0.00 4.30
507 509 0.911525 TTCTGGGAGAAGCTGGGAGG 60.912 60.000 0.00 0.00 29.50 4.30
508 510 1.211456 ATTCTGGGAGAAGCTGGGAG 58.789 55.000 0.00 0.00 37.69 4.30
509 511 1.283029 CAATTCTGGGAGAAGCTGGGA 59.717 52.381 0.00 0.00 37.69 4.37
510 512 1.760192 CAATTCTGGGAGAAGCTGGG 58.240 55.000 0.00 0.00 37.69 4.45
511 513 1.101331 GCAATTCTGGGAGAAGCTGG 58.899 55.000 0.00 0.00 37.69 4.85
512 514 1.101331 GGCAATTCTGGGAGAAGCTG 58.899 55.000 0.00 0.00 37.69 4.24
513 515 0.700564 TGGCAATTCTGGGAGAAGCT 59.299 50.000 0.00 0.00 37.69 3.74
514 516 0.813821 GTGGCAATTCTGGGAGAAGC 59.186 55.000 0.00 0.00 37.69 3.86
515 517 2.503895 AGTGGCAATTCTGGGAGAAG 57.496 50.000 0.00 0.00 37.69 2.85
516 518 2.978156 AAGTGGCAATTCTGGGAGAA 57.022 45.000 0.00 0.00 38.78 2.87
517 519 4.591321 ATTAAGTGGCAATTCTGGGAGA 57.409 40.909 2.32 0.00 0.00 3.71
518 520 6.966534 AATATTAAGTGGCAATTCTGGGAG 57.033 37.500 2.32 0.00 0.00 4.30
519 521 7.732222 AAAATATTAAGTGGCAATTCTGGGA 57.268 32.000 2.32 0.00 0.00 4.37
551 553 8.858094 GCTAGTTAAGGTCTAATTAGCTAGGAA 58.142 37.037 7.67 0.00 41.05 3.36
552 554 8.226112 AGCTAGTTAAGGTCTAATTAGCTAGGA 58.774 37.037 15.72 0.00 45.18 2.94
553 555 8.411991 AGCTAGTTAAGGTCTAATTAGCTAGG 57.588 38.462 15.72 0.00 45.18 3.02
555 557 9.517868 CCTAGCTAGTTAAGGTCTAATTAGCTA 57.482 37.037 19.31 19.29 45.18 3.32
557 559 8.406730 TCCTAGCTAGTTAAGGTCTAATTAGC 57.593 38.462 19.31 9.70 40.67 3.09
561 563 9.214962 ACAATTCCTAGCTAGTTAAGGTCTAAT 57.785 33.333 19.31 0.19 37.13 1.73
562 564 8.605325 ACAATTCCTAGCTAGTTAAGGTCTAA 57.395 34.615 19.31 0.00 37.13 2.10
563 565 9.705103 TTACAATTCCTAGCTAGTTAAGGTCTA 57.295 33.333 19.31 5.95 37.13 2.59
564 566 8.605325 TTACAATTCCTAGCTAGTTAAGGTCT 57.395 34.615 19.31 0.00 37.13 3.85
565 567 9.662947 TTTTACAATTCCTAGCTAGTTAAGGTC 57.337 33.333 19.31 0.00 37.13 3.85
590 592 9.657419 CTTCCAGAATTGCCACTTAATATTTTT 57.343 29.630 0.00 0.00 0.00 1.94
591 593 9.034800 TCTTCCAGAATTGCCACTTAATATTTT 57.965 29.630 0.00 0.00 0.00 1.82
592 594 8.593945 TCTTCCAGAATTGCCACTTAATATTT 57.406 30.769 0.00 0.00 0.00 1.40
593 595 8.593945 TTCTTCCAGAATTGCCACTTAATATT 57.406 30.769 0.00 0.00 0.00 1.28
594 596 7.201857 GCTTCTTCCAGAATTGCCACTTAATAT 60.202 37.037 0.00 0.00 33.13 1.28
595 597 6.095440 GCTTCTTCCAGAATTGCCACTTAATA 59.905 38.462 0.00 0.00 33.13 0.98
596 598 5.105595 GCTTCTTCCAGAATTGCCACTTAAT 60.106 40.000 0.00 0.00 33.13 1.40
597 599 4.218417 GCTTCTTCCAGAATTGCCACTTAA 59.782 41.667 0.00 0.00 33.13 1.85
598 600 3.758554 GCTTCTTCCAGAATTGCCACTTA 59.241 43.478 0.00 0.00 33.13 2.24
599 601 2.560105 GCTTCTTCCAGAATTGCCACTT 59.440 45.455 0.00 0.00 33.13 3.16
600 602 2.165998 GCTTCTTCCAGAATTGCCACT 58.834 47.619 0.00 0.00 33.13 4.00
601 603 2.094854 CAGCTTCTTCCAGAATTGCCAC 60.095 50.000 0.00 0.00 33.13 5.01
602 604 2.165167 CAGCTTCTTCCAGAATTGCCA 58.835 47.619 0.00 0.00 33.13 4.92
603 605 1.475682 CCAGCTTCTTCCAGAATTGCC 59.524 52.381 0.00 0.00 33.13 4.52
604 606 1.475682 CCCAGCTTCTTCCAGAATTGC 59.524 52.381 0.00 0.00 33.13 3.56
605 607 2.097825 CCCCAGCTTCTTCCAGAATTG 58.902 52.381 0.00 0.00 33.13 2.32
606 608 1.995542 TCCCCAGCTTCTTCCAGAATT 59.004 47.619 0.00 0.00 33.13 2.17
607 609 1.563410 CTCCCCAGCTTCTTCCAGAAT 59.437 52.381 0.00 0.00 33.13 2.40
608 610 0.987294 CTCCCCAGCTTCTTCCAGAA 59.013 55.000 0.00 0.00 32.50 3.02
609 611 0.911525 CCTCCCCAGCTTCTTCCAGA 60.912 60.000 0.00 0.00 0.00 3.86
610 612 1.606531 CCTCCCCAGCTTCTTCCAG 59.393 63.158 0.00 0.00 0.00 3.86
611 613 1.925455 CCCTCCCCAGCTTCTTCCA 60.925 63.158 0.00 0.00 0.00 3.53
612 614 2.684499 CCCCTCCCCAGCTTCTTCC 61.684 68.421 0.00 0.00 0.00 3.46
613 615 2.684499 CCCCCTCCCCAGCTTCTTC 61.684 68.421 0.00 0.00 0.00 2.87
614 616 2.615288 CCCCCTCCCCAGCTTCTT 60.615 66.667 0.00 0.00 0.00 2.52
615 617 3.952799 GACCCCCTCCCCAGCTTCT 62.953 68.421 0.00 0.00 0.00 2.85
616 618 3.412408 GACCCCCTCCCCAGCTTC 61.412 72.222 0.00 0.00 0.00 3.86
617 619 3.829311 TTGACCCCCTCCCCAGCTT 62.829 63.158 0.00 0.00 0.00 3.74
618 620 3.603330 ATTGACCCCCTCCCCAGCT 62.603 63.158 0.00 0.00 0.00 4.24
619 621 2.573893 GAATTGACCCCCTCCCCAGC 62.574 65.000 0.00 0.00 0.00 4.85
620 622 0.921256 AGAATTGACCCCCTCCCCAG 60.921 60.000 0.00 0.00 0.00 4.45
621 623 1.165782 AGAATTGACCCCCTCCCCA 59.834 57.895 0.00 0.00 0.00 4.96
622 624 1.615262 CAGAATTGACCCCCTCCCC 59.385 63.158 0.00 0.00 0.00 4.81
623 625 1.615262 CCAGAATTGACCCCCTCCC 59.385 63.158 0.00 0.00 0.00 4.30
624 626 0.919289 TCCCAGAATTGACCCCCTCC 60.919 60.000 0.00 0.00 0.00 4.30
625 627 0.548510 CTCCCAGAATTGACCCCCTC 59.451 60.000 0.00 0.00 0.00 4.30
626 628 0.121197 TCTCCCAGAATTGACCCCCT 59.879 55.000 0.00 0.00 0.00 4.79
627 629 0.999712 TTCTCCCAGAATTGACCCCC 59.000 55.000 0.00 0.00 0.00 5.40
640 642 2.899900 AGTTCTTTTGGGCAATTCTCCC 59.100 45.455 5.52 5.52 44.17 4.30
641 643 3.306294 CCAGTTCTTTTGGGCAATTCTCC 60.306 47.826 0.00 0.00 31.87 3.71
642 644 3.862264 GCCAGTTCTTTTGGGCAATTCTC 60.862 47.826 0.00 0.00 45.70 2.87
643 645 2.037641 GCCAGTTCTTTTGGGCAATTCT 59.962 45.455 0.00 0.00 45.70 2.40
644 646 2.416747 GCCAGTTCTTTTGGGCAATTC 58.583 47.619 0.00 0.00 45.70 2.17
645 647 2.549064 GCCAGTTCTTTTGGGCAATT 57.451 45.000 0.00 0.00 45.70 2.32
650 652 2.299013 GTTAAGGGCCAGTTCTTTTGGG 59.701 50.000 6.18 0.00 36.19 4.12
651 653 2.299013 GGTTAAGGGCCAGTTCTTTTGG 59.701 50.000 6.18 0.00 38.78 3.28
652 654 3.230976 AGGTTAAGGGCCAGTTCTTTTG 58.769 45.455 6.18 0.00 0.00 2.44
653 655 3.140332 AGAGGTTAAGGGCCAGTTCTTTT 59.860 43.478 6.18 0.00 0.00 2.27
654 656 2.716969 AGAGGTTAAGGGCCAGTTCTTT 59.283 45.455 6.18 0.00 0.00 2.52
655 657 2.040412 CAGAGGTTAAGGGCCAGTTCTT 59.960 50.000 6.18 0.29 0.00 2.52
656 658 1.630878 CAGAGGTTAAGGGCCAGTTCT 59.369 52.381 6.18 0.00 0.00 3.01
657 659 1.340114 CCAGAGGTTAAGGGCCAGTTC 60.340 57.143 6.18 0.00 0.00 3.01
658 660 0.698818 CCAGAGGTTAAGGGCCAGTT 59.301 55.000 6.18 0.00 0.00 3.16
659 661 0.475828 ACCAGAGGTTAAGGGCCAGT 60.476 55.000 6.18 0.00 27.29 4.00
660 662 0.035056 CACCAGAGGTTAAGGGCCAG 60.035 60.000 6.18 0.00 31.02 4.85
661 663 1.497309 CCACCAGAGGTTAAGGGCCA 61.497 60.000 6.18 0.00 31.02 5.36
662 664 1.205460 TCCACCAGAGGTTAAGGGCC 61.205 60.000 0.00 0.00 31.02 5.80
663 665 0.035343 GTCCACCAGAGGTTAAGGGC 60.035 60.000 0.00 0.00 31.02 5.19
664 666 0.618981 GGTCCACCAGAGGTTAAGGG 59.381 60.000 0.00 0.00 31.02 3.95
665 667 0.249398 CGGTCCACCAGAGGTTAAGG 59.751 60.000 0.00 0.00 31.02 2.69
666 668 1.204941 CTCGGTCCACCAGAGGTTAAG 59.795 57.143 8.78 0.00 34.95 1.85
667 669 1.203087 TCTCGGTCCACCAGAGGTTAA 60.203 52.381 13.95 0.00 37.31 2.01
668 670 0.406750 TCTCGGTCCACCAGAGGTTA 59.593 55.000 13.95 0.00 37.31 2.85
669 671 0.471211 TTCTCGGTCCACCAGAGGTT 60.471 55.000 13.95 0.00 37.31 3.50
670 672 0.252284 ATTCTCGGTCCACCAGAGGT 60.252 55.000 13.95 0.00 37.31 3.85
671 673 1.409427 GTATTCTCGGTCCACCAGAGG 59.591 57.143 13.95 0.00 37.31 3.69
672 674 1.409427 GGTATTCTCGGTCCACCAGAG 59.591 57.143 9.88 9.88 37.72 3.35
673 675 1.272816 TGGTATTCTCGGTCCACCAGA 60.273 52.381 0.00 0.00 34.40 3.86
674 676 1.191535 TGGTATTCTCGGTCCACCAG 58.808 55.000 0.00 0.00 34.40 4.00
675 677 1.191535 CTGGTATTCTCGGTCCACCA 58.808 55.000 0.00 0.00 37.68 4.17
676 678 1.192428 ACTGGTATTCTCGGTCCACC 58.808 55.000 0.00 0.00 0.00 4.61
677 679 3.005578 GGATACTGGTATTCTCGGTCCAC 59.994 52.174 0.00 0.00 0.00 4.02
678 680 3.228453 GGATACTGGTATTCTCGGTCCA 58.772 50.000 0.00 0.00 0.00 4.02
679 681 3.228453 TGGATACTGGTATTCTCGGTCC 58.772 50.000 1.39 0.00 37.61 4.46
680 682 4.082136 GGATGGATACTGGTATTCTCGGTC 60.082 50.000 1.39 0.00 37.61 4.79
681 683 3.833070 GGATGGATACTGGTATTCTCGGT 59.167 47.826 1.39 0.00 37.61 4.69
682 684 3.832490 TGGATGGATACTGGTATTCTCGG 59.168 47.826 1.39 0.00 37.61 4.63
683 685 5.468540 TTGGATGGATACTGGTATTCTCG 57.531 43.478 1.39 0.00 37.61 4.04
694 696 9.739276 TGAACCAATCTATATTTGGATGGATAC 57.261 33.333 17.26 0.30 45.35 2.24
701 703 6.540914 GGTCGTTGAACCAATCTATATTTGGA 59.459 38.462 17.26 0.00 45.35 3.53
722 724 2.991190 ACTGCGTTAACTACATTGGTCG 59.009 45.455 3.71 0.00 0.00 4.79
821 823 1.215647 CCGGCACTCTGACCTGTAC 59.784 63.158 0.00 0.00 0.00 2.90
855 857 1.303806 GGCTGGGCTTTAAACGGGA 60.304 57.895 0.00 0.00 0.00 5.14
858 860 1.595093 CTGGGGCTGGGCTTTAAACG 61.595 60.000 0.00 0.00 0.00 3.60
928 931 1.444895 GTGCGGCAAGGCAATGAAG 60.445 57.895 3.23 0.00 45.93 3.02
950 954 1.229209 GGTGTGGGAGTCAGAGGGA 60.229 63.158 0.00 0.00 0.00 4.20
1106 1129 3.031013 CCCCTATAAACCAGGCAAAAGG 58.969 50.000 0.00 0.00 0.00 3.11
1107 1130 2.430694 GCCCCTATAAACCAGGCAAAAG 59.569 50.000 0.00 0.00 43.32 2.27
1135 1158 0.179233 GTGCACGCTAAAGCCGTTAC 60.179 55.000 0.00 0.00 37.91 2.50
1172 1195 1.724582 CGGGGCCGATCAATCCAAAC 61.725 60.000 0.00 0.00 42.83 2.93
1173 1196 1.453015 CGGGGCCGATCAATCCAAA 60.453 57.895 0.00 0.00 42.83 3.28
1174 1197 2.191908 CGGGGCCGATCAATCCAA 59.808 61.111 0.00 0.00 42.83 3.53
1202 1225 0.317519 CGAACAAACAAAGACCGCCC 60.318 55.000 0.00 0.00 0.00 6.13
1205 1228 2.222863 ACGAACGAACAAACAAAGACCG 60.223 45.455 0.14 0.00 0.00 4.79
1206 1229 3.394313 ACGAACGAACAAACAAAGACC 57.606 42.857 0.14 0.00 0.00 3.85
1207 1230 3.002441 GCAACGAACGAACAAACAAAGAC 60.002 43.478 0.14 0.00 0.00 3.01
1217 1240 1.568025 GTCCCTGCAACGAACGAAC 59.432 57.895 0.14 0.00 0.00 3.95
1497 1545 2.893489 GGGTTCAGAATCCTTGCTGTTT 59.107 45.455 5.03 0.00 33.90 2.83
1499 1547 1.425066 TGGGTTCAGAATCCTTGCTGT 59.575 47.619 13.94 0.00 33.90 4.40
1503 1551 2.167075 GGCATTGGGTTCAGAATCCTTG 59.833 50.000 13.94 11.79 0.00 3.61
1507 1555 2.726821 TCAGGCATTGGGTTCAGAATC 58.273 47.619 0.00 0.00 0.00 2.52
1508 1556 2.905415 TCAGGCATTGGGTTCAGAAT 57.095 45.000 0.00 0.00 0.00 2.40
1509 1557 2.627699 GTTTCAGGCATTGGGTTCAGAA 59.372 45.455 0.00 0.00 0.00 3.02
1581 1629 2.118076 ATGGTGCCCCACAGGTTG 59.882 61.111 0.00 0.00 45.65 3.77
1651 1699 4.119136 GGTGGACTGAATTTTGGTTGTTG 58.881 43.478 0.00 0.00 0.00 3.33
1695 1743 6.721571 ATGATAACTTGTCACGTACTTTGG 57.278 37.500 0.00 0.00 0.00 3.28
1696 1744 7.792925 TGAATGATAACTTGTCACGTACTTTG 58.207 34.615 0.00 0.00 0.00 2.77
1698 1746 6.590292 CCTGAATGATAACTTGTCACGTACTT 59.410 38.462 0.00 0.00 0.00 2.24
1700 1748 5.291128 CCCTGAATGATAACTTGTCACGTAC 59.709 44.000 0.00 0.00 0.00 3.67
1701 1749 5.186215 TCCCTGAATGATAACTTGTCACGTA 59.814 40.000 0.00 0.00 0.00 3.57
1702 1750 4.020573 TCCCTGAATGATAACTTGTCACGT 60.021 41.667 0.00 0.00 0.00 4.49
1703 1751 4.330074 GTCCCTGAATGATAACTTGTCACG 59.670 45.833 0.00 0.00 0.00 4.35
1745 1793 4.380973 CCTGATCGCACTAGAAACAGAGAA 60.381 45.833 0.00 0.00 33.67 2.87
1747 1795 3.129462 TCCTGATCGCACTAGAAACAGAG 59.871 47.826 0.00 0.00 33.67 3.35
1749 1797 3.443037 CTCCTGATCGCACTAGAAACAG 58.557 50.000 0.00 0.00 0.00 3.16
1751 1799 2.166664 ACCTCCTGATCGCACTAGAAAC 59.833 50.000 0.00 0.00 0.00 2.78
1753 1801 2.025155 GACCTCCTGATCGCACTAGAA 58.975 52.381 0.00 0.00 0.00 2.10
1755 1803 0.309302 CGACCTCCTGATCGCACTAG 59.691 60.000 0.00 0.00 0.00 2.57
2098 2163 3.819337 CCATGCTTACCTGGATCTCAATG 59.181 47.826 0.00 0.00 34.24 2.82
2114 2179 5.242795 TCTGAATCATCATCATCCATGCT 57.757 39.130 0.00 0.00 34.37 3.79
2157 2224 8.671028 TGTGTATCTGAATTCTGATCAAACATG 58.329 33.333 25.68 0.00 36.25 3.21
2400 2486 2.524887 CCTAATCCGGGGGCCGTA 60.525 66.667 0.00 0.00 46.80 4.02
2466 2552 3.072915 CACTGACCTGATATGCCCCAATA 59.927 47.826 0.00 0.00 0.00 1.90
2527 2613 5.588246 TGTTGAACAGTTCAGCTTGTCAATA 59.412 36.000 25.29 5.34 40.93 1.90
2528 2614 4.398988 TGTTGAACAGTTCAGCTTGTCAAT 59.601 37.500 25.29 0.00 40.93 2.57
2533 2619 4.361451 AGTTGTTGAACAGTTCAGCTTG 57.639 40.909 25.29 0.00 40.93 4.01
2545 2631 6.872920 AGCATTTTAGTTCCAAGTTGTTGAA 58.127 32.000 1.45 0.00 35.46 2.69
2547 2633 7.254421 GGAAAGCATTTTAGTTCCAAGTTGTTG 60.254 37.037 1.45 0.00 39.27 3.33
2548 2634 6.761242 GGAAAGCATTTTAGTTCCAAGTTGTT 59.239 34.615 1.45 0.00 39.27 2.83
2550 2636 6.515832 AGGAAAGCATTTTAGTTCCAAGTTG 58.484 36.000 4.26 0.00 39.27 3.16
2552 2638 5.833131 TGAGGAAAGCATTTTAGTTCCAAGT 59.167 36.000 4.26 0.00 39.27 3.16
2553 2639 6.331369 TGAGGAAAGCATTTTAGTTCCAAG 57.669 37.500 4.26 0.00 39.27 3.61
2554 2640 6.723298 TTGAGGAAAGCATTTTAGTTCCAA 57.277 33.333 4.26 0.00 39.27 3.53
2555 2641 6.690530 CATTGAGGAAAGCATTTTAGTTCCA 58.309 36.000 4.26 0.00 39.27 3.53
2568 2680 3.314635 GCATAGACCTGCATTGAGGAAAG 59.685 47.826 8.56 0.00 41.87 2.62
2735 2847 6.086222 CACAGTTGTTGCAATAACTATGACC 58.914 40.000 31.83 10.90 36.89 4.02
2777 2889 0.438830 CTAGCACCGCGTTGAAGAAC 59.561 55.000 8.22 0.00 0.00 3.01
2885 2997 2.026822 ACCTTGCAGGAGATACCACTTG 60.027 50.000 8.91 0.00 37.67 3.16
2960 3072 0.668535 TCAGGCTATCCACGATGTCG 59.331 55.000 0.11 0.11 46.33 4.35
2978 3090 1.064825 TGAAAGGGGTGGAGACCTTC 58.935 55.000 0.00 0.00 45.98 3.46
3252 3376 4.813697 GCTCGATTTTATCAAAGAGGAGCT 59.186 41.667 11.70 0.00 38.32 4.09
3304 3428 7.040201 ACTGTGATAATGATGAAACAAAGCAGT 60.040 33.333 0.00 0.00 0.00 4.40
3310 3434 8.394971 ACTGAACTGTGATAATGATGAAACAA 57.605 30.769 0.00 0.00 0.00 2.83
3331 3523 6.379988 TGCTAGATGGTGATTTACTGTACTGA 59.620 38.462 6.77 0.00 0.00 3.41
3347 3539 6.749118 GCAGTTTCTGTAAAAATGCTAGATGG 59.251 38.462 13.73 0.00 36.95 3.51
3397 3589 4.080919 AGGTCATGTATCTGCAGCAGTTTA 60.081 41.667 22.10 12.21 32.61 2.01
3433 3626 0.976641 TGGAAGTGTAGTGGCCTCTG 59.023 55.000 17.65 0.00 0.00 3.35
3436 3629 1.270907 CTCTGGAAGTGTAGTGGCCT 58.729 55.000 3.32 0.00 33.76 5.19
3437 3630 0.977395 ACTCTGGAAGTGTAGTGGCC 59.023 55.000 0.00 0.00 39.18 5.36
3448 3641 8.090788 AGAAGGCTGTTAATAATACTCTGGAA 57.909 34.615 0.00 0.00 0.00 3.53
3591 3795 7.334844 ACAGGAATAATAAGTAAAAGCAGGC 57.665 36.000 0.00 0.00 0.00 4.85
3612 3816 1.826385 ATTCGGAGGGCAAAGAACAG 58.174 50.000 0.00 0.00 0.00 3.16
3647 3851 8.196771 AGAAGTTGTGAAAATGCTTATTGACAA 58.803 29.630 0.00 0.00 0.00 3.18
3736 3942 7.451429 GCAACTATGCGTCAGAAGATATAATG 58.549 38.462 0.00 0.00 43.83 1.90
3884 4090 1.402456 GCGAGAAGAGAGTGGCGTAAA 60.402 52.381 0.00 0.00 0.00 2.01
3886 4094 0.958876 TGCGAGAAGAGAGTGGCGTA 60.959 55.000 0.00 0.00 0.00 4.42
3890 4098 0.605589 AAGGTGCGAGAAGAGAGTGG 59.394 55.000 0.00 0.00 0.00 4.00
3905 4113 2.168728 GGCTTCCGTATTCTCTCAAGGT 59.831 50.000 0.00 0.00 0.00 3.50
3919 4127 2.032528 TGAACTGCAGGGCTTCCG 59.967 61.111 19.93 0.00 35.17 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.