Multiple sequence alignment - TraesCS3A01G386800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G386800 chr3A 100.000 5289 0 0 1 5289 636154162 636159450 0.000000e+00 9768.0
1 TraesCS3A01G386800 chr3A 86.325 1894 143 49 3070 4923 636391974 636393791 0.000000e+00 1956.0
2 TraesCS3A01G386800 chr3A 88.014 1385 102 31 3561 4923 636399617 636400959 0.000000e+00 1580.0
3 TraesCS3A01G386800 chr3A 87.843 1201 98 22 928 2116 636397848 636399012 0.000000e+00 1365.0
4 TraesCS3A01G386800 chr3A 85.749 828 95 7 3470 4293 636534869 636535677 0.000000e+00 854.0
5 TraesCS3A01G386800 chr3A 85.290 741 81 13 3563 4296 655648008 655647289 0.000000e+00 739.0
6 TraesCS3A01G386800 chr3A 88.060 536 37 18 693 1209 636526285 636526812 1.260000e-170 610.0
7 TraesCS3A01G386800 chr3A 76.695 708 98 40 1355 2033 636533672 636534341 1.100000e-86 331.0
8 TraesCS3A01G386800 chr3A 79.614 466 63 16 1592 2051 655649147 655648708 6.650000e-79 305.0
9 TraesCS3A01G386800 chr3A 93.491 169 9 2 2907 3073 636391882 636392050 3.160000e-62 250.0
10 TraesCS3A01G386800 chr3A 84.722 216 25 5 4668 4881 636536091 636536300 5.370000e-50 209.0
11 TraesCS3A01G386800 chr3A 84.120 233 20 10 4336 4565 655647216 655646998 5.370000e-50 209.0
12 TraesCS3A01G386800 chr3A 82.449 245 26 10 2839 3072 703900611 703900849 1.160000e-46 198.0
13 TraesCS3A01G386800 chr3A 81.203 266 25 11 5044 5286 636395354 636395617 1.940000e-44 191.0
14 TraesCS3A01G386800 chr3A 88.321 137 10 3 665 800 703900100 703900231 5.480000e-35 159.0
15 TraesCS3A01G386800 chr3A 82.558 172 25 5 4294 4463 636535727 636535895 4.270000e-31 147.0
16 TraesCS3A01G386800 chr3A 90.909 110 9 1 4783 4891 655640250 655640141 4.270000e-31 147.0
17 TraesCS3A01G386800 chr3A 87.313 134 9 8 4788 4919 655646773 655646646 4.270000e-31 147.0
18 TraesCS3A01G386800 chr3A 88.776 98 11 0 259 356 14036445 14036542 2.590000e-23 121.0
19 TraesCS3A01G386800 chr3A 87.736 106 10 1 2001 2106 655648699 655648597 2.590000e-23 121.0
20 TraesCS3A01G386800 chr3A 97.059 68 2 0 3070 3137 636157159 636157226 1.200000e-21 115.0
21 TraesCS3A01G386800 chr3A 97.059 68 2 0 2998 3065 636157231 636157298 1.200000e-21 115.0
22 TraesCS3A01G386800 chr3A 93.151 73 5 0 5044 5116 636401102 636401174 2.010000e-19 108.0
23 TraesCS3A01G386800 chr3A 84.762 105 11 3 2969 3073 636534345 636534444 3.370000e-17 100.0
24 TraesCS3A01G386800 chr3A 91.176 68 2 2 2838 2905 636391559 636391622 7.300000e-14 89.8
25 TraesCS3A01G386800 chr3D 90.127 1884 124 26 3133 4997 497960629 497958789 0.000000e+00 2392.0
26 TraesCS3A01G386800 chr3D 85.798 1366 135 29 3561 4911 498097503 498096182 0.000000e+00 1393.0
27 TraesCS3A01G386800 chr3D 84.161 1168 134 16 3136 4291 497871251 497870123 0.000000e+00 1085.0
28 TraesCS3A01G386800 chr3D 91.499 694 46 6 3133 3825 497907111 497906430 0.000000e+00 942.0
29 TraesCS3A01G386800 chr3D 89.300 757 46 17 3956 4701 497906432 497905700 0.000000e+00 917.0
30 TraesCS3A01G386800 chr3D 85.023 868 94 19 709 1556 497872607 497871756 0.000000e+00 850.0
31 TraesCS3A01G386800 chr3D 88.984 699 58 9 1421 2116 498100213 498099531 0.000000e+00 846.0
32 TraesCS3A01G386800 chr3D 80.868 1129 152 27 3183 4291 570805138 570804054 0.000000e+00 830.0
33 TraesCS3A01G386800 chr3D 83.393 843 100 14 3460 4296 520220289 520219481 0.000000e+00 745.0
34 TraesCS3A01G386800 chr3D 89.052 612 41 22 646 1245 498113662 498113065 0.000000e+00 736.0
35 TraesCS3A01G386800 chr3D 89.280 597 39 15 642 1222 497968007 497967420 0.000000e+00 725.0
36 TraesCS3A01G386800 chr3D 82.220 838 85 37 646 1461 497909239 497908444 0.000000e+00 664.0
37 TraesCS3A01G386800 chr3D 95.775 213 7 2 2838 3049 497907316 497907105 5.070000e-90 342.0
38 TraesCS3A01G386800 chr3D 78.495 465 68 14 1593 2051 520221401 520220963 5.220000e-70 276.0
39 TraesCS3A01G386800 chr3D 86.885 244 20 9 4294 4530 497870071 497869833 4.060000e-66 263.0
40 TraesCS3A01G386800 chr3D 91.713 181 15 0 1239 1419 498104074 498103894 8.790000e-63 252.0
41 TraesCS3A01G386800 chr3D 86.192 239 21 6 4657 4889 497869759 497869527 1.140000e-61 248.0
42 TraesCS3A01G386800 chr3D 83.133 249 29 7 2811 3055 570805475 570805236 1.150000e-51 215.0
43 TraesCS3A01G386800 chr3D 82.353 272 19 11 4336 4597 520219408 520219156 5.370000e-50 209.0
44 TraesCS3A01G386800 chr3D 86.188 181 25 0 4743 4923 497905686 497905506 4.180000e-46 196.0
45 TraesCS3A01G386800 chr3D 87.006 177 18 3 5051 5223 497898837 497898662 1.500000e-45 195.0
46 TraesCS3A01G386800 chr3D 86.395 147 11 6 2811 2948 498099536 498099390 9.170000e-33 152.0
47 TraesCS3A01G386800 chr3D 85.821 134 17 2 3714 3846 520220504 520220372 1.990000e-29 141.0
48 TraesCS3A01G386800 chr3D 93.684 95 5 1 4798 4891 570803528 570803434 1.990000e-29 141.0
49 TraesCS3A01G386800 chr3D 86.154 130 12 6 4788 4915 520219097 520218972 9.240000e-28 135.0
50 TraesCS3A01G386800 chr3D 90.411 73 6 1 5044 5116 497958514 497958443 1.570000e-15 95.3
51 TraesCS3A01G386800 chr3D 94.915 59 3 0 2838 2896 497960727 497960669 5.640000e-15 93.5
52 TraesCS3A01G386800 chr3D 88.608 79 4 3 2995 3073 497871347 497871274 2.030000e-14 91.6
53 TraesCS3A01G386800 chr3D 86.957 69 7 1 5223 5289 156890542 156890610 5.680000e-10 76.8
54 TraesCS3A01G386800 chr3D 95.652 46 1 1 3004 3049 497960667 497960623 7.350000e-09 73.1
55 TraesCS3A01G386800 chr3B 89.055 1471 94 30 3601 5039 659002148 659000713 0.000000e+00 1762.0
56 TraesCS3A01G386800 chr3B 89.798 1235 87 16 646 1866 659071642 659070433 0.000000e+00 1546.0
57 TraesCS3A01G386800 chr3B 89.165 1126 92 14 705 1804 658938713 658937592 0.000000e+00 1376.0
58 TraesCS3A01G386800 chr3B 86.253 1113 95 17 1016 2114 659009261 659008193 0.000000e+00 1155.0
59 TraesCS3A01G386800 chr3B 93.132 728 50 0 3564 4291 658605124 658604397 0.000000e+00 1068.0
60 TraesCS3A01G386800 chr3B 88.080 797 48 9 3834 4600 658936163 658935384 0.000000e+00 902.0
61 TraesCS3A01G386800 chr3B 80.577 1143 153 41 3183 4291 757922236 757921129 0.000000e+00 817.0
62 TraesCS3A01G386800 chr3B 91.681 589 29 17 711 1286 658498788 658498207 0.000000e+00 798.0
63 TraesCS3A01G386800 chr3B 88.788 660 42 25 646 1286 658608047 658607401 0.000000e+00 780.0
64 TraesCS3A01G386800 chr3B 90.653 567 31 5 3834 4397 659069125 659068578 0.000000e+00 734.0
65 TraesCS3A01G386800 chr3B 92.323 508 18 4 2838 3345 658606367 658605881 0.000000e+00 702.0
66 TraesCS3A01G386800 chr3B 86.508 504 40 15 4394 4889 659068498 659068015 3.630000e-146 529.0
67 TraesCS3A01G386800 chr3B 89.781 274 12 3 2838 3111 658496765 658496508 2.360000e-88 337.0
68 TraesCS3A01G386800 chr3B 90.310 258 14 7 1859 2116 658937377 658937131 1.420000e-85 327.0
69 TraesCS3A01G386800 chr3B 89.535 258 21 4 1859 2116 659070354 659070103 6.610000e-84 322.0
70 TraesCS3A01G386800 chr3B 77.250 589 83 29 4294 4866 658604345 658603792 1.110000e-76 298.0
71 TraesCS3A01G386800 chr3B 79.310 377 51 16 1585 1952 658607220 658606862 6.850000e-59 239.0
72 TraesCS3A01G386800 chr3B 82.253 293 33 9 4681 4960 658935365 658935079 8.860000e-58 235.0
73 TraesCS3A01G386800 chr3B 83.824 272 19 13 2811 3072 659008196 659007940 8.860000e-58 235.0
74 TraesCS3A01G386800 chr3B 90.643 171 14 2 5044 5212 658963760 658963590 5.330000e-55 226.0
75 TraesCS3A01G386800 chr3B 82.836 268 22 11 2814 3072 659070105 659069853 8.920000e-53 219.0
76 TraesCS3A01G386800 chr3B 81.550 271 23 13 2811 3072 658937136 658936884 1.160000e-46 198.0
77 TraesCS3A01G386800 chr3B 80.515 272 32 13 2811 3072 757922565 757922305 6.990000e-44 189.0
78 TraesCS3A01G386800 chr3B 89.076 119 7 2 4925 5037 659067917 659067799 5.520000e-30 143.0
79 TraesCS3A01G386800 chr3B 87.597 129 8 5 674 800 757923047 757922925 5.520000e-30 143.0
80 TraesCS3A01G386800 chr3B 81.818 165 22 6 2910 3072 757923609 757923451 1.200000e-26 132.0
81 TraesCS3A01G386800 chr3B 93.846 65 3 1 5226 5289 824292417 824292353 4.360000e-16 97.1
82 TraesCS3A01G386800 chr3B 89.394 66 6 1 5051 5116 658941373 658941309 1.220000e-11 82.4
83 TraesCS3A01G386800 chr3B 89.394 66 6 1 5051 5116 659016474 659016410 1.220000e-11 82.4
84 TraesCS3A01G386800 chrUn 94.767 707 16 2 2126 2812 23785294 23785999 0.000000e+00 1081.0
85 TraesCS3A01G386800 chrUn 82.353 102 13 2 259 355 33276441 33276340 3.390000e-12 84.2
86 TraesCS3A01G386800 chr2D 93.901 705 21 9 2126 2810 29144323 29143621 0.000000e+00 1044.0
87 TraesCS3A01G386800 chr2D 92.641 693 48 3 2126 2815 18547683 18546991 0.000000e+00 994.0
88 TraesCS3A01G386800 chr2D 90.986 355 9 8 2126 2459 512291011 512291363 1.740000e-124 457.0
89 TraesCS3A01G386800 chr2D 84.848 264 27 8 6 259 8468675 8468415 2.440000e-63 254.0
90 TraesCS3A01G386800 chr2D 81.651 109 16 4 259 366 424722504 424722609 2.620000e-13 87.9
91 TraesCS3A01G386800 chr2D 90.323 62 3 3 5228 5287 602549428 602549368 1.580000e-10 78.7
92 TraesCS3A01G386800 chr1D 93.901 705 22 8 2126 2810 45262931 45262228 0.000000e+00 1044.0
93 TraesCS3A01G386800 chr1D 93.617 705 24 6 2126 2810 325505689 325506392 0.000000e+00 1033.0
94 TraesCS3A01G386800 chr1D 93.137 714 27 12 2119 2812 490729622 490730333 0.000000e+00 1027.0
95 TraesCS3A01G386800 chr1D 94.382 89 5 0 4799 4887 315607883 315607971 2.570000e-28 137.0
96 TraesCS3A01G386800 chr1D 98.684 76 1 0 4799 4874 432396619 432396544 9.240000e-28 135.0
97 TraesCS3A01G386800 chr1D 91.837 98 5 3 4793 4889 381067961 381067866 3.320000e-27 134.0
98 TraesCS3A01G386800 chr1D 98.649 74 1 0 4799 4872 47880389 47880462 1.200000e-26 132.0
99 TraesCS3A01G386800 chr1D 98.649 74 1 0 4799 4872 439868663 439868590 1.200000e-26 132.0
100 TraesCS3A01G386800 chr1D 96.154 78 3 0 4795 4872 433679602 433679679 1.550000e-25 128.0
101 TraesCS3A01G386800 chr1D 98.485 66 1 0 4799 4864 315609617 315609682 3.350000e-22 117.0
102 TraesCS3A01G386800 chr1D 100.000 28 0 0 5240 5267 365081410 365081437 1.000000e-02 52.8
103 TraesCS3A01G386800 chr5D 93.662 710 21 3 2126 2812 390690181 390690889 0.000000e+00 1040.0
104 TraesCS3A01G386800 chr5D 84.512 297 23 10 2113 2388 9407283 9406989 6.750000e-69 272.0
105 TraesCS3A01G386800 chr5D 95.455 88 2 2 4787 4873 305712683 305712769 7.140000e-29 139.0
106 TraesCS3A01G386800 chr5D 94.382 89 3 2 4799 4885 539481168 539481256 9.240000e-28 135.0
107 TraesCS3A01G386800 chr5D 94.253 87 5 0 4788 4874 97041617 97041703 3.320000e-27 134.0
108 TraesCS3A01G386800 chr5D 92.063 63 3 2 5228 5289 249996905 249996966 2.620000e-13 87.9
109 TraesCS3A01G386800 chr5D 90.625 64 3 3 5228 5289 8630478 8630540 1.220000e-11 82.4
110 TraesCS3A01G386800 chr7B 93.333 705 26 11 2126 2810 510575164 510574461 0.000000e+00 1022.0
111 TraesCS3A01G386800 chr1B 92.978 712 26 9 2126 2815 38635930 38635221 0.000000e+00 1016.0
112 TraesCS3A01G386800 chr6B 92.135 712 31 8 2126 2815 29235764 29235056 0.000000e+00 981.0
113 TraesCS3A01G386800 chr6B 85.654 237 24 4 34 261 48530583 48530818 1.900000e-59 241.0
114 TraesCS3A01G386800 chr6B 83.206 262 31 9 10 260 648119694 648119435 1.480000e-55 228.0
115 TraesCS3A01G386800 chr6B 87.879 99 10 2 259 356 648119340 648119243 1.200000e-21 115.0
116 TraesCS3A01G386800 chr6B 89.855 69 7 0 5141 5209 648123162 648123230 7.300000e-14 89.8
117 TraesCS3A01G386800 chr6B 91.667 60 4 1 5231 5289 479173943 479174002 1.220000e-11 82.4
118 TraesCS3A01G386800 chr5B 89.889 722 48 10 2118 2815 19731730 19732450 0.000000e+00 905.0
119 TraesCS3A01G386800 chr5B 90.476 63 3 3 5229 5289 356177362 356177423 4.390000e-11 80.5
120 TraesCS3A01G386800 chr2B 90.028 712 39 10 2126 2815 637696203 637695502 0.000000e+00 893.0
121 TraesCS3A01G386800 chr2B 85.654 237 24 4 34 261 598656345 598656110 1.900000e-59 241.0
122 TraesCS3A01G386800 chr2B 96.970 99 1 2 705 801 175075232 175075330 1.180000e-36 165.0
123 TraesCS3A01G386800 chr7A 88.781 722 54 9 2116 2815 116529028 116528312 0.000000e+00 859.0
124 TraesCS3A01G386800 chr7A 86.297 343 23 10 2118 2440 690095205 690095543 8.430000e-93 351.0
125 TraesCS3A01G386800 chr7A 85.654 237 24 6 34 261 130191244 130191009 1.900000e-59 241.0
126 TraesCS3A01G386800 chr7A 85.232 237 25 4 34 261 252946001 252946236 8.860000e-58 235.0
127 TraesCS3A01G386800 chr7A 81.579 114 19 2 259 372 727533586 727533475 5.640000e-15 93.5
128 TraesCS3A01G386800 chr7A 92.308 52 2 2 5173 5223 128785922 128785872 7.350000e-09 73.1
129 TraesCS3A01G386800 chr4A 85.283 265 24 8 6 261 620392668 620392410 5.250000e-65 259.0
130 TraesCS3A01G386800 chr4A 86.076 237 23 4 34 261 522133174 522132939 4.090000e-61 246.0
131 TraesCS3A01G386800 chr2A 86.076 237 23 4 34 261 440097532 440097297 4.090000e-61 246.0
132 TraesCS3A01G386800 chr1A 94.505 91 3 2 4799 4888 47806855 47806944 7.140000e-29 139.0
133 TraesCS3A01G386800 chr1A 94.505 91 4 1 4799 4889 121132422 121132333 7.140000e-29 139.0
134 TraesCS3A01G386800 chr1A 97.436 78 2 0 4798 4875 481885043 481884966 3.320000e-27 134.0
135 TraesCS3A01G386800 chr1A 98.667 75 1 0 4799 4873 531013097 531013023 3.320000e-27 134.0
136 TraesCS3A01G386800 chr1A 81.633 98 17 1 255 351 1806653 1806750 4.390000e-11 80.5
137 TraesCS3A01G386800 chr7D 95.349 86 4 0 4788 4873 590446788 590446703 2.570000e-28 137.0
138 TraesCS3A01G386800 chr7D 88.060 67 5 3 5225 5289 582564135 582564070 5.680000e-10 76.8
139 TraesCS3A01G386800 chr7D 86.567 67 6 3 5225 5289 582669439 582669374 2.640000e-08 71.3
140 TraesCS3A01G386800 chr4D 98.667 75 1 0 4799 4873 505968141 505968215 3.320000e-27 134.0
141 TraesCS3A01G386800 chr4D 95.946 74 3 0 4796 4869 505921833 505921906 2.590000e-23 121.0
142 TraesCS3A01G386800 chr4D 94.118 68 4 0 4799 4866 123143619 123143552 2.610000e-18 104.0
143 TraesCS3A01G386800 chr4D 95.000 60 3 0 4811 4870 425659213 425659272 1.570000e-15 95.3
144 TraesCS3A01G386800 chr4D 91.803 61 5 0 4809 4869 138143417 138143477 9.440000e-13 86.1
145 TraesCS3A01G386800 chr4D 91.525 59 5 0 4810 4868 205675329 205675271 1.220000e-11 82.4
146 TraesCS3A01G386800 chr4D 90.164 61 6 0 4809 4869 138087494 138087554 4.390000e-11 80.5
147 TraesCS3A01G386800 chr4D 100.000 43 0 0 4830 4872 190434222 190434264 4.390000e-11 80.5
148 TraesCS3A01G386800 chr4D 90.164 61 6 0 4809 4869 289668462 289668402 4.390000e-11 80.5
149 TraesCS3A01G386800 chr4D 89.831 59 5 1 5230 5287 13090110 13090052 2.040000e-09 75.0
150 TraesCS3A01G386800 chr5A 87.500 72 9 0 5141 5212 475780021 475780092 3.390000e-12 84.2
151 TraesCS3A01G386800 chr6D 89.062 64 4 3 5228 5289 348044447 348044509 5.680000e-10 76.8
152 TraesCS3A01G386800 chr6D 88.889 63 6 1 5228 5289 376636882 376636820 5.680000e-10 76.8
153 TraesCS3A01G386800 chr6D 89.062 64 4 3 5228 5289 455895819 455895757 5.680000e-10 76.8
154 TraesCS3A01G386800 chr6D 88.710 62 6 1 5229 5289 365455965 365456026 2.040000e-09 75.0
155 TraesCS3A01G386800 chr6D 88.525 61 4 3 5229 5287 428261337 428261278 2.640000e-08 71.3
156 TraesCS3A01G386800 chr6D 83.824 68 9 2 5223 5289 56897297 56897231 4.420000e-06 63.9
157 TraesCS3A01G386800 chr4B 88.889 63 6 1 5226 5287 575686017 575686079 5.680000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G386800 chr3A 636154162 636159450 5288 False 3332.666667 9768 98.039333 1 5289 3 chr3A.!!$F3 5288
1 TraesCS3A01G386800 chr3A 636391559 636401174 9615 False 791.400000 1956 88.743286 928 5286 7 chr3A.!!$F4 4358
2 TraesCS3A01G386800 chr3A 636526285 636526812 527 False 610.000000 610 88.060000 693 1209 1 chr3A.!!$F2 516
3 TraesCS3A01G386800 chr3A 636533672 636536300 2628 False 328.200000 854 82.897200 1355 4881 5 chr3A.!!$F5 3526
4 TraesCS3A01G386800 chr3A 655646646 655649147 2501 True 304.200000 739 84.814600 1592 4919 5 chr3A.!!$R2 3327
5 TraesCS3A01G386800 chr3D 498113065 498113662 597 True 736.000000 736 89.052000 646 1245 1 chr3D.!!$R3 599
6 TraesCS3A01G386800 chr3D 497967420 497968007 587 True 725.000000 725 89.280000 642 1222 1 chr3D.!!$R2 580
7 TraesCS3A01G386800 chr3D 497958443 497960727 2284 True 663.475000 2392 92.776250 2838 5116 4 chr3D.!!$R6 2278
8 TraesCS3A01G386800 chr3D 498096182 498104074 7892 True 660.750000 1393 88.222500 1239 4911 4 chr3D.!!$R7 3672
9 TraesCS3A01G386800 chr3D 497905506 497909239 3733 True 612.200000 942 88.996400 646 4923 5 chr3D.!!$R5 4277
10 TraesCS3A01G386800 chr3D 497869527 497872607 3080 True 507.520000 1085 86.173800 709 4889 5 chr3D.!!$R4 4180
11 TraesCS3A01G386800 chr3D 570803434 570805475 2041 True 395.333333 830 85.895000 2811 4891 3 chr3D.!!$R9 2080
12 TraesCS3A01G386800 chr3D 520218972 520221401 2429 True 301.200000 745 83.243200 1593 4915 5 chr3D.!!$R8 3322
13 TraesCS3A01G386800 chr3B 659000713 659002148 1435 True 1762.000000 1762 89.055000 3601 5039 1 chr3B.!!$R2 1438
14 TraesCS3A01G386800 chr3B 659007940 659009261 1321 True 695.000000 1155 85.038500 1016 3072 2 chr3B.!!$R8 2056
15 TraesCS3A01G386800 chr3B 658603792 658608047 4255 True 617.400000 1068 86.160600 646 4866 5 chr3B.!!$R6 4220
16 TraesCS3A01G386800 chr3B 659067799 659071642 3843 True 582.166667 1546 88.067667 646 5037 6 chr3B.!!$R9 4391
17 TraesCS3A01G386800 chr3B 658496508 658498788 2280 True 567.500000 798 90.731000 711 3111 2 chr3B.!!$R5 2400
18 TraesCS3A01G386800 chr3B 658935079 658941373 6294 True 520.066667 1376 86.792000 705 5116 6 chr3B.!!$R7 4411
19 TraesCS3A01G386800 chr3B 757921129 757923609 2480 True 320.250000 817 82.626750 674 4291 4 chr3B.!!$R10 3617
20 TraesCS3A01G386800 chrUn 23785294 23785999 705 False 1081.000000 1081 94.767000 2126 2812 1 chrUn.!!$F1 686
21 TraesCS3A01G386800 chr2D 29143621 29144323 702 True 1044.000000 1044 93.901000 2126 2810 1 chr2D.!!$R3 684
22 TraesCS3A01G386800 chr2D 18546991 18547683 692 True 994.000000 994 92.641000 2126 2815 1 chr2D.!!$R2 689
23 TraesCS3A01G386800 chr1D 45262228 45262931 703 True 1044.000000 1044 93.901000 2126 2810 1 chr1D.!!$R1 684
24 TraesCS3A01G386800 chr1D 325505689 325506392 703 False 1033.000000 1033 93.617000 2126 2810 1 chr1D.!!$F2 684
25 TraesCS3A01G386800 chr1D 490729622 490730333 711 False 1027.000000 1027 93.137000 2119 2812 1 chr1D.!!$F5 693
26 TraesCS3A01G386800 chr5D 390690181 390690889 708 False 1040.000000 1040 93.662000 2126 2812 1 chr5D.!!$F5 686
27 TraesCS3A01G386800 chr7B 510574461 510575164 703 True 1022.000000 1022 93.333000 2126 2810 1 chr7B.!!$R1 684
28 TraesCS3A01G386800 chr1B 38635221 38635930 709 True 1016.000000 1016 92.978000 2126 2815 1 chr1B.!!$R1 689
29 TraesCS3A01G386800 chr6B 29235056 29235764 708 True 981.000000 981 92.135000 2126 2815 1 chr6B.!!$R1 689
30 TraesCS3A01G386800 chr5B 19731730 19732450 720 False 905.000000 905 89.889000 2118 2815 1 chr5B.!!$F1 697
31 TraesCS3A01G386800 chr2B 637695502 637696203 701 True 893.000000 893 90.028000 2126 2815 1 chr2B.!!$R2 689
32 TraesCS3A01G386800 chr7A 116528312 116529028 716 True 859.000000 859 88.781000 2116 2815 1 chr7A.!!$R1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 0.098200 GGCCGTGCGGTATTTTCTTC 59.902 55.0 12.46 0.0 37.65 2.87 F
349 350 0.111089 GCGACGCACAGACTCTTTTG 60.111 55.0 16.42 0.0 0.00 2.44 F
822 3490 0.250901 AGCAATGCAACTCTCCCGTT 60.251 50.0 8.35 0.0 0.00 4.44 F
881 3549 0.319900 CCCGACCAGACAAGACACAG 60.320 60.0 0.00 0.0 0.00 3.66 F
882 3550 0.673985 CCGACCAGACAAGACACAGA 59.326 55.0 0.00 0.0 0.00 3.41 F
1966 11840 0.758123 GCAGAGGATGGAAGGAGAGG 59.242 60.0 0.00 0.0 0.00 3.69 F
3454 15068 0.618981 GTGGGTTTCCTCCTCCGATT 59.381 55.0 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 11962 0.038744 AAGGCATGGGTTCAGGTGAG 59.961 55.000 0.00 0.00 0.00 3.51 R
2023 11966 2.431782 CCAAATAAGGCATGGGTTCAGG 59.568 50.000 0.00 0.00 0.00 3.86 R
2123 12066 2.557317 GCATGCCTCCATTTCCAAATG 58.443 47.619 6.36 5.21 44.12 2.32 R
2588 12563 3.821600 TCCTCCAGTAGATATTGCGTCTC 59.178 47.826 0.00 0.00 0.00 3.36 R
2824 12800 4.037327 GCTTGCTTCTCTTCTCAAAGGTTT 59.963 41.667 0.00 0.00 33.03 3.27 R
3542 15669 0.179000 CGCTTAGCCTGTTCCTGGAT 59.821 55.000 0.00 0.00 0.00 3.41 R
4550 17292 0.035176 GTGCCACATGCCACCAAAAT 59.965 50.000 0.00 0.00 40.16 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 6.796785 AAATGCTATTTAGGATGCAACCTT 57.203 33.333 21.80 5.86 41.00 3.50
155 156 7.896383 AAATGCTATTTAGGATGCAACCTTA 57.104 32.000 21.80 9.48 41.00 2.69
156 157 7.516198 AATGCTATTTAGGATGCAACCTTAG 57.484 36.000 21.80 16.76 41.00 2.18
159 160 7.570132 TGCTATTTAGGATGCAACCTTAGTTA 58.430 34.615 21.80 7.13 41.00 2.24
160 161 8.050325 TGCTATTTAGGATGCAACCTTAGTTAA 58.950 33.333 21.80 5.94 41.00 2.01
161 162 9.067986 GCTATTTAGGATGCAACCTTAGTTAAT 57.932 33.333 21.80 14.12 41.00 1.40
164 165 8.446599 TTTAGGATGCAACCTTAGTTAATAGC 57.553 34.615 21.80 0.00 41.00 2.97
167 168 5.588648 GGATGCAACCTTAGTTAATAGCACA 59.411 40.000 5.61 0.00 34.97 4.57
168 169 5.873179 TGCAACCTTAGTTAATAGCACAC 57.127 39.130 0.00 0.00 33.27 3.82
170 171 4.628333 GCAACCTTAGTTAATAGCACACGA 59.372 41.667 0.00 0.00 33.27 4.35
171 172 5.293569 GCAACCTTAGTTAATAGCACACGAT 59.706 40.000 0.00 0.00 33.27 3.73
177 178 8.035394 CCTTAGTTAATAGCACACGATCCATAT 58.965 37.037 0.00 0.00 0.00 1.78
178 179 9.424319 CTTAGTTAATAGCACACGATCCATATT 57.576 33.333 0.00 0.00 0.00 1.28
179 180 9.772973 TTAGTTAATAGCACACGATCCATATTT 57.227 29.630 0.00 0.00 0.00 1.40
180 181 8.311650 AGTTAATAGCACACGATCCATATTTC 57.688 34.615 0.00 0.00 0.00 2.17
181 182 8.150945 AGTTAATAGCACACGATCCATATTTCT 58.849 33.333 0.00 0.00 0.00 2.52
182 183 8.774586 GTTAATAGCACACGATCCATATTTCTT 58.225 33.333 0.00 0.00 0.00 2.52
183 184 7.807977 AATAGCACACGATCCATATTTCTTT 57.192 32.000 0.00 0.00 0.00 2.52
184 185 5.741388 AGCACACGATCCATATTTCTTTC 57.259 39.130 0.00 0.00 0.00 2.62
186 187 4.034048 GCACACGATCCATATTTCTTTCGT 59.966 41.667 0.00 0.00 40.11 3.85
188 189 6.637365 CACACGATCCATATTTCTTTCGTAC 58.363 40.000 0.00 0.00 37.69 3.67
189 190 5.751990 ACACGATCCATATTTCTTTCGTACC 59.248 40.000 0.00 0.00 37.69 3.34
190 191 4.980434 ACGATCCATATTTCTTTCGTACCG 59.020 41.667 0.00 0.00 37.98 4.02
191 192 5.217393 CGATCCATATTTCTTTCGTACCGA 58.783 41.667 0.00 0.00 0.00 4.69
192 193 5.116680 CGATCCATATTTCTTTCGTACCGAC 59.883 44.000 0.00 0.00 34.89 4.79
193 194 5.327616 TCCATATTTCTTTCGTACCGACA 57.672 39.130 0.00 0.00 34.89 4.35
194 195 5.104374 TCCATATTTCTTTCGTACCGACAC 58.896 41.667 0.00 0.00 34.89 3.67
196 197 1.769733 TTTCTTTCGTACCGACACCG 58.230 50.000 0.00 0.00 34.89 4.94
199 200 1.131126 TCTTTCGTACCGACACCGATC 59.869 52.381 0.00 0.00 34.89 3.69
201 202 1.980951 TTCGTACCGACACCGATCCG 61.981 60.000 0.00 0.00 34.89 4.18
214 215 2.389713 CGATCCGGATTGCAATGAAC 57.610 50.000 20.22 6.08 0.00 3.18
215 216 1.670295 CGATCCGGATTGCAATGAACA 59.330 47.619 20.22 0.00 0.00 3.18
216 217 2.291465 CGATCCGGATTGCAATGAACAT 59.709 45.455 20.22 3.45 0.00 2.71
219 220 2.945008 TCCGGATTGCAATGAACATCTC 59.055 45.455 18.59 0.00 0.00 2.75
220 221 2.684374 CCGGATTGCAATGAACATCTCA 59.316 45.455 18.59 0.00 38.81 3.27
235 236 7.894708 TGAACATCTCATTAAAGCCAAAATGA 58.105 30.769 5.42 5.42 39.24 2.57
239 240 8.031277 ACATCTCATTAAAGCCAAAATGAAGAC 58.969 33.333 6.65 0.00 40.56 3.01
241 242 6.429692 TCTCATTAAAGCCAAAATGAAGACGA 59.570 34.615 0.00 0.00 40.56 4.20
243 244 7.083858 TCATTAAAGCCAAAATGAAGACGAAG 58.916 34.615 0.00 0.00 38.74 3.79
245 246 3.140325 AGCCAAAATGAAGACGAAGGA 57.860 42.857 0.00 0.00 0.00 3.36
248 249 3.981416 GCCAAAATGAAGACGAAGGAAAC 59.019 43.478 0.00 0.00 0.00 2.78
249 250 4.546570 CCAAAATGAAGACGAAGGAAACC 58.453 43.478 0.00 0.00 0.00 3.27
259 260 3.069289 ACGAAGGAAACCGTCAATAACC 58.931 45.455 0.00 0.00 33.23 2.85
260 261 3.244318 ACGAAGGAAACCGTCAATAACCT 60.244 43.478 0.00 0.00 33.23 3.50
261 262 3.370061 CGAAGGAAACCGTCAATAACCTC 59.630 47.826 0.00 0.00 31.63 3.85
262 263 2.968675 AGGAAACCGTCAATAACCTCG 58.031 47.619 0.00 0.00 0.00 4.63
263 264 2.004733 GGAAACCGTCAATAACCTCGG 58.995 52.381 0.00 0.00 46.98 4.63
264 265 1.395954 GAAACCGTCAATAACCTCGGC 59.604 52.381 0.00 0.00 45.76 5.54
265 266 0.322322 AACCGTCAATAACCTCGGCA 59.678 50.000 0.00 0.00 45.76 5.69
267 268 1.006832 CCGTCAATAACCTCGGCAAG 58.993 55.000 0.00 0.00 36.68 4.01
268 269 1.404986 CCGTCAATAACCTCGGCAAGA 60.405 52.381 0.00 0.00 36.68 3.02
270 271 2.007608 GTCAATAACCTCGGCAAGACC 58.992 52.381 0.00 0.00 0.00 3.85
271 272 1.906574 TCAATAACCTCGGCAAGACCT 59.093 47.619 0.00 0.00 35.61 3.85
272 273 3.101437 TCAATAACCTCGGCAAGACCTA 58.899 45.455 0.00 0.00 35.61 3.08
273 274 3.709653 TCAATAACCTCGGCAAGACCTAT 59.290 43.478 0.00 0.00 35.61 2.57
274 275 4.163458 TCAATAACCTCGGCAAGACCTATT 59.837 41.667 0.00 0.00 35.61 1.73
275 276 2.403252 AACCTCGGCAAGACCTATTG 57.597 50.000 0.00 0.00 35.61 1.90
278 279 0.179045 CTCGGCAAGACCTATTGGGG 60.179 60.000 0.00 0.00 40.03 4.96
279 280 0.912487 TCGGCAAGACCTATTGGGGT 60.912 55.000 0.00 0.00 43.07 4.95
290 291 3.265995 ACCTATTGGGGTCTTAGTTGTGG 59.734 47.826 0.00 0.00 40.03 4.17
294 295 3.775261 TGGGGTCTTAGTTGTGGTTAC 57.225 47.619 0.00 0.00 0.00 2.50
295 296 3.320129 TGGGGTCTTAGTTGTGGTTACT 58.680 45.455 0.00 0.00 0.00 2.24
299 300 3.072211 GTCTTAGTTGTGGTTACTGGGC 58.928 50.000 0.00 0.00 0.00 5.36
300 301 2.976882 TCTTAGTTGTGGTTACTGGGCT 59.023 45.455 0.00 0.00 0.00 5.19
301 302 4.020839 GTCTTAGTTGTGGTTACTGGGCTA 60.021 45.833 0.00 0.00 0.00 3.93
302 303 4.222145 TCTTAGTTGTGGTTACTGGGCTAG 59.778 45.833 0.00 0.00 0.00 3.42
304 305 0.988832 TTGTGGTTACTGGGCTAGGG 59.011 55.000 2.02 0.00 0.00 3.53
305 306 1.223763 GTGGTTACTGGGCTAGGGC 59.776 63.158 2.02 0.00 37.82 5.19
315 316 3.925090 GCTAGGGCCGTGCGGTAT 61.925 66.667 8.57 1.56 37.65 2.73
317 318 1.145377 CTAGGGCCGTGCGGTATTT 59.855 57.895 8.57 0.00 37.65 1.40
319 320 0.462403 TAGGGCCGTGCGGTATTTTC 60.462 55.000 8.57 0.00 37.65 2.29
322 323 0.098200 GGCCGTGCGGTATTTTCTTC 59.902 55.000 12.46 0.00 37.65 2.87
324 325 1.467342 GCCGTGCGGTATTTTCTTCTT 59.533 47.619 12.46 0.00 37.65 2.52
325 326 2.475685 GCCGTGCGGTATTTTCTTCTTC 60.476 50.000 12.46 0.00 37.65 2.87
326 327 3.000727 CCGTGCGGTATTTTCTTCTTCT 58.999 45.455 1.93 0.00 0.00 2.85
327 328 4.178540 CCGTGCGGTATTTTCTTCTTCTA 58.821 43.478 1.93 0.00 0.00 2.10
329 330 5.293569 CCGTGCGGTATTTTCTTCTTCTATT 59.706 40.000 1.93 0.00 0.00 1.73
330 331 6.185399 CGTGCGGTATTTTCTTCTTCTATTG 58.815 40.000 0.00 0.00 0.00 1.90
331 332 5.965918 GTGCGGTATTTTCTTCTTCTATTGC 59.034 40.000 0.00 0.00 0.00 3.56
332 333 5.198274 GCGGTATTTTCTTCTTCTATTGCG 58.802 41.667 0.00 0.00 0.00 4.85
333 334 5.006358 GCGGTATTTTCTTCTTCTATTGCGA 59.994 40.000 0.00 0.00 0.00 5.10
334 335 6.411652 CGGTATTTTCTTCTTCTATTGCGAC 58.588 40.000 0.00 0.00 0.00 5.19
336 337 3.991605 TTTCTTCTTCTATTGCGACGC 57.008 42.857 14.19 14.19 0.00 5.19
338 339 2.259618 TCTTCTTCTATTGCGACGCAC 58.740 47.619 24.42 0.00 38.71 5.34
340 341 1.629013 TCTTCTATTGCGACGCACAG 58.371 50.000 24.42 21.54 38.71 3.66
342 343 1.321743 CTTCTATTGCGACGCACAGAC 59.678 52.381 24.42 0.00 38.71 3.51
343 344 0.526211 TCTATTGCGACGCACAGACT 59.474 50.000 24.42 7.60 38.71 3.24
344 345 0.917259 CTATTGCGACGCACAGACTC 59.083 55.000 24.42 0.00 38.71 3.36
345 346 0.526211 TATTGCGACGCACAGACTCT 59.474 50.000 24.42 4.01 38.71 3.24
347 348 0.529773 TTGCGACGCACAGACTCTTT 60.530 50.000 24.42 0.00 38.71 2.52
348 349 0.529773 TGCGACGCACAGACTCTTTT 60.530 50.000 20.50 0.00 31.71 2.27
349 350 0.111089 GCGACGCACAGACTCTTTTG 60.111 55.000 16.42 0.00 0.00 2.44
351 352 1.221414 GACGCACAGACTCTTTTGCT 58.779 50.000 7.51 0.00 32.56 3.91
352 353 2.404215 GACGCACAGACTCTTTTGCTA 58.596 47.619 7.51 0.00 32.56 3.49
353 354 2.408050 ACGCACAGACTCTTTTGCTAG 58.592 47.619 7.51 0.00 32.56 3.42
355 356 3.005472 ACGCACAGACTCTTTTGCTAGTA 59.995 43.478 7.51 0.00 32.56 1.82
356 357 3.610242 CGCACAGACTCTTTTGCTAGTAG 59.390 47.826 7.51 0.00 32.56 2.57
357 358 4.616143 CGCACAGACTCTTTTGCTAGTAGA 60.616 45.833 0.00 0.00 32.56 2.59
358 359 4.862018 GCACAGACTCTTTTGCTAGTAGAG 59.138 45.833 0.00 0.00 40.91 2.43
359 360 5.336055 GCACAGACTCTTTTGCTAGTAGAGA 60.336 44.000 15.49 7.65 38.95 3.10
361 362 7.148641 CACAGACTCTTTTGCTAGTAGAGAAA 58.851 38.462 15.49 0.20 38.95 2.52
364 365 9.862371 CAGACTCTTTTGCTAGTAGAGAAATAA 57.138 33.333 15.49 0.00 38.95 1.40
366 367 8.710835 ACTCTTTTGCTAGTAGAGAAATAAGC 57.289 34.615 15.49 0.00 38.95 3.09
367 368 7.766738 ACTCTTTTGCTAGTAGAGAAATAAGCC 59.233 37.037 15.49 0.00 38.95 4.35
368 369 7.620880 TCTTTTGCTAGTAGAGAAATAAGCCA 58.379 34.615 0.00 0.00 0.00 4.75
369 370 8.100791 TCTTTTGCTAGTAGAGAAATAAGCCAA 58.899 33.333 0.00 0.00 0.00 4.52
370 371 8.630054 TTTTGCTAGTAGAGAAATAAGCCAAA 57.370 30.769 0.00 0.00 0.00 3.28
371 372 7.849804 TTGCTAGTAGAGAAATAAGCCAAAG 57.150 36.000 0.00 0.00 0.00 2.77
372 373 7.182817 TGCTAGTAGAGAAATAAGCCAAAGA 57.817 36.000 0.00 0.00 0.00 2.52
374 375 8.267894 TGCTAGTAGAGAAATAAGCCAAAGAAT 58.732 33.333 0.00 0.00 0.00 2.40
375 376 8.555361 GCTAGTAGAGAAATAAGCCAAAGAATG 58.445 37.037 0.00 0.00 0.00 2.67
376 377 9.823647 CTAGTAGAGAAATAAGCCAAAGAATGA 57.176 33.333 0.00 0.00 0.00 2.57
378 379 9.520515 AGTAGAGAAATAAGCCAAAGAATGAAA 57.479 29.630 0.00 0.00 0.00 2.69
403 404 3.369546 AAAAATGTTGACGCCTTGGAG 57.630 42.857 0.00 0.00 0.00 3.86
407 408 2.623878 TGTTGACGCCTTGGAGTAAA 57.376 45.000 0.00 0.00 0.00 2.01
408 409 2.920524 TGTTGACGCCTTGGAGTAAAA 58.079 42.857 0.00 0.00 0.00 1.52
409 410 3.280295 TGTTGACGCCTTGGAGTAAAAA 58.720 40.909 0.00 0.00 0.00 1.94
444 445 9.823098 CATGAAAAGAAGAAATAAGACAGTGAG 57.177 33.333 0.00 0.00 0.00 3.51
445 446 9.784531 ATGAAAAGAAGAAATAAGACAGTGAGA 57.215 29.630 0.00 0.00 0.00 3.27
446 447 9.613428 TGAAAAGAAGAAATAAGACAGTGAGAA 57.387 29.630 0.00 0.00 0.00 2.87
499 500 9.829507 AATGGAGTAGAATGAAATAAGACAGAG 57.170 33.333 0.00 0.00 0.00 3.35
500 501 8.595362 TGGAGTAGAATGAAATAAGACAGAGA 57.405 34.615 0.00 0.00 0.00 3.10
501 502 9.035890 TGGAGTAGAATGAAATAAGACAGAGAA 57.964 33.333 0.00 0.00 0.00 2.87
502 503 9.877178 GGAGTAGAATGAAATAAGACAGAGAAA 57.123 33.333 0.00 0.00 0.00 2.52
527 528 8.637196 AAAAGAGTAAGGGAAAAATGGAGTAG 57.363 34.615 0.00 0.00 0.00 2.57
528 529 7.569599 AAGAGTAAGGGAAAAATGGAGTAGA 57.430 36.000 0.00 0.00 0.00 2.59
529 530 7.569599 AGAGTAAGGGAAAAATGGAGTAGAA 57.430 36.000 0.00 0.00 0.00 2.10
530 531 8.164057 AGAGTAAGGGAAAAATGGAGTAGAAT 57.836 34.615 0.00 0.00 0.00 2.40
531 532 8.049721 AGAGTAAGGGAAAAATGGAGTAGAATG 58.950 37.037 0.00 0.00 0.00 2.67
532 533 7.928873 AGTAAGGGAAAAATGGAGTAGAATGA 58.071 34.615 0.00 0.00 0.00 2.57
534 535 9.020731 GTAAGGGAAAAATGGAGTAGAATGAAA 57.979 33.333 0.00 0.00 0.00 2.69
535 536 8.670521 AAGGGAAAAATGGAGTAGAATGAAAT 57.329 30.769 0.00 0.00 0.00 2.17
537 538 9.768215 AGGGAAAAATGGAGTAGAATGAAATAA 57.232 29.630 0.00 0.00 0.00 1.40
540 541 9.521503 GAAAAATGGAGTAGAATGAAATAAGGC 57.478 33.333 0.00 0.00 0.00 4.35
541 542 8.593945 AAAATGGAGTAGAATGAAATAAGGCA 57.406 30.769 0.00 0.00 0.00 4.75
542 543 7.814264 AATGGAGTAGAATGAAATAAGGCAG 57.186 36.000 0.00 0.00 0.00 4.85
543 544 6.560003 TGGAGTAGAATGAAATAAGGCAGA 57.440 37.500 0.00 0.00 0.00 4.26
544 545 6.586344 TGGAGTAGAATGAAATAAGGCAGAG 58.414 40.000 0.00 0.00 0.00 3.35
546 547 7.092891 TGGAGTAGAATGAAATAAGGCAGAGAA 60.093 37.037 0.00 0.00 0.00 2.87
547 548 7.770897 GGAGTAGAATGAAATAAGGCAGAGAAA 59.229 37.037 0.00 0.00 0.00 2.52
548 549 9.167311 GAGTAGAATGAAATAAGGCAGAGAAAA 57.833 33.333 0.00 0.00 0.00 2.29
615 616 5.523438 TTTTTAAACGATGCCTTGGAGTT 57.477 34.783 0.00 0.00 0.00 3.01
616 617 6.636562 TTTTTAAACGATGCCTTGGAGTTA 57.363 33.333 0.00 0.00 0.00 2.24
617 618 6.636562 TTTTAAACGATGCCTTGGAGTTAA 57.363 33.333 0.00 0.00 0.00 2.01
618 619 6.636562 TTTAAACGATGCCTTGGAGTTAAA 57.363 33.333 0.00 0.00 0.00 1.52
620 621 3.695830 ACGATGCCTTGGAGTTAAAGA 57.304 42.857 0.00 0.00 0.00 2.52
622 623 4.394729 ACGATGCCTTGGAGTTAAAGAAA 58.605 39.130 0.00 0.00 0.00 2.52
623 624 4.825085 ACGATGCCTTGGAGTTAAAGAAAA 59.175 37.500 0.00 0.00 0.00 2.29
625 626 5.629435 CGATGCCTTGGAGTTAAAGAAAAAC 59.371 40.000 0.00 0.00 0.00 2.43
626 627 5.270893 TGCCTTGGAGTTAAAGAAAAACC 57.729 39.130 0.00 0.00 0.00 3.27
627 628 4.959839 TGCCTTGGAGTTAAAGAAAAACCT 59.040 37.500 0.00 0.00 0.00 3.50
628 629 5.423931 TGCCTTGGAGTTAAAGAAAAACCTT 59.576 36.000 0.00 0.00 0.00 3.50
629 630 6.070481 TGCCTTGGAGTTAAAGAAAAACCTTT 60.070 34.615 0.00 0.00 39.46 3.11
631 632 7.011109 GCCTTGGAGTTAAAGAAAAACCTTTTC 59.989 37.037 4.10 4.10 37.52 2.29
632 633 8.038351 CCTTGGAGTTAAAGAAAAACCTTTTCA 58.962 33.333 12.91 0.00 37.52 2.69
633 634 8.766000 TTGGAGTTAAAGAAAAACCTTTTCAC 57.234 30.769 12.91 4.10 37.52 3.18
635 636 6.474427 GGAGTTAAAGAAAAACCTTTTCACGG 59.526 38.462 12.91 0.00 37.52 4.94
636 637 7.160547 AGTTAAAGAAAAACCTTTTCACGGA 57.839 32.000 12.91 0.00 37.52 4.69
638 639 8.089597 AGTTAAAGAAAAACCTTTTCACGGAAA 58.910 29.630 12.91 0.00 37.52 3.13
639 640 8.710551 GTTAAAGAAAAACCTTTTCACGGAAAA 58.289 29.630 12.91 10.18 38.90 2.29
640 641 7.915293 AAAGAAAAACCTTTTCACGGAAAAT 57.085 28.000 12.91 0.00 40.14 1.82
642 643 9.438228 AAAGAAAAACCTTTTCACGGAAAATAA 57.562 25.926 12.91 0.00 40.14 1.40
643 644 9.438228 AAGAAAAACCTTTTCACGGAAAATAAA 57.562 25.926 12.91 0.00 40.14 1.40
644 645 9.607988 AGAAAAACCTTTTCACGGAAAATAAAT 57.392 25.926 12.91 0.00 40.14 1.40
692 700 7.332678 GCAGAATGAAATAAGGCACAAAGAAAT 59.667 33.333 0.00 0.00 39.69 2.17
701 709 9.914131 AATAAGGCACAAAGAAATAGAAGAAAC 57.086 29.630 0.00 0.00 0.00 2.78
702 710 7.588497 AAGGCACAAAGAAATAGAAGAAACT 57.412 32.000 0.00 0.00 0.00 2.66
815 3483 2.780065 TGTTGACAGCAATGCAACTC 57.220 45.000 8.35 0.00 41.71 3.01
820 3488 0.957395 ACAGCAATGCAACTCTCCCG 60.957 55.000 8.35 0.00 0.00 5.14
822 3490 0.250901 AGCAATGCAACTCTCCCGTT 60.251 50.000 8.35 0.00 0.00 4.44
825 3493 2.664916 CAATGCAACTCTCCCGTTTTG 58.335 47.619 0.00 0.00 0.00 2.44
826 3494 1.981256 ATGCAACTCTCCCGTTTTGT 58.019 45.000 0.00 0.00 0.00 2.83
827 3495 2.623878 TGCAACTCTCCCGTTTTGTA 57.376 45.000 0.00 0.00 0.00 2.41
828 3496 3.134574 TGCAACTCTCCCGTTTTGTAT 57.865 42.857 0.00 0.00 0.00 2.29
829 3497 4.274602 TGCAACTCTCCCGTTTTGTATA 57.725 40.909 0.00 0.00 0.00 1.47
830 3498 4.643463 TGCAACTCTCCCGTTTTGTATAA 58.357 39.130 0.00 0.00 0.00 0.98
831 3499 5.250200 TGCAACTCTCCCGTTTTGTATAAT 58.750 37.500 0.00 0.00 0.00 1.28
833 3501 7.051623 TGCAACTCTCCCGTTTTGTATAATAT 58.948 34.615 0.00 0.00 0.00 1.28
834 3502 7.225931 TGCAACTCTCCCGTTTTGTATAATATC 59.774 37.037 0.00 0.00 0.00 1.63
835 3503 7.568861 GCAACTCTCCCGTTTTGTATAATATCG 60.569 40.741 0.00 0.00 0.00 2.92
837 3505 7.719483 ACTCTCCCGTTTTGTATAATATCGAA 58.281 34.615 0.00 0.00 0.00 3.71
838 3506 7.650903 ACTCTCCCGTTTTGTATAATATCGAAC 59.349 37.037 0.00 0.00 0.00 3.95
839 3507 6.925165 TCTCCCGTTTTGTATAATATCGAACC 59.075 38.462 0.00 0.00 0.00 3.62
840 3508 5.990996 TCCCGTTTTGTATAATATCGAACCC 59.009 40.000 0.00 0.00 0.00 4.11
841 3509 5.993441 CCCGTTTTGTATAATATCGAACCCT 59.007 40.000 0.00 0.00 0.00 4.34
842 3510 6.146673 CCCGTTTTGTATAATATCGAACCCTC 59.853 42.308 0.00 0.00 0.00 4.30
843 3511 6.927381 CCGTTTTGTATAATATCGAACCCTCT 59.073 38.462 0.00 0.00 0.00 3.69
844 3512 7.095774 CCGTTTTGTATAATATCGAACCCTCTG 60.096 40.741 0.00 0.00 0.00 3.35
845 3513 7.650504 CGTTTTGTATAATATCGAACCCTCTGA 59.349 37.037 0.00 0.00 0.00 3.27
846 3514 9.490379 GTTTTGTATAATATCGAACCCTCTGAT 57.510 33.333 0.00 0.00 0.00 2.90
848 3516 9.706691 TTTGTATAATATCGAACCCTCTGATTC 57.293 33.333 0.00 0.00 0.00 2.52
850 3518 4.939052 AATATCGAACCCTCTGATTCGT 57.061 40.909 10.56 3.35 46.08 3.85
851 3519 4.939052 ATATCGAACCCTCTGATTCGTT 57.061 40.909 10.56 6.33 46.08 3.85
852 3520 2.649331 TCGAACCCTCTGATTCGTTC 57.351 50.000 10.56 6.66 46.08 3.95
853 3521 1.203994 TCGAACCCTCTGATTCGTTCC 59.796 52.381 10.56 0.00 46.08 3.62
855 3523 0.618981 AACCCTCTGATTCGTTCCCC 59.381 55.000 0.00 0.00 0.00 4.81
856 3524 1.144057 CCCTCTGATTCGTTCCCCG 59.856 63.158 0.00 0.00 38.13 5.73
864 3532 3.639361 TCGTTCCCCGAAACCCCC 61.639 66.667 0.00 0.00 44.03 5.40
867 3535 3.639361 TTCCCCGAAACCCCCGAC 61.639 66.667 0.00 0.00 0.00 4.79
870 3538 4.404098 CCCGAAACCCCCGACCAG 62.404 72.222 0.00 0.00 0.00 4.00
871 3539 3.315949 CCGAAACCCCCGACCAGA 61.316 66.667 0.00 0.00 0.00 3.86
872 3540 2.047560 CGAAACCCCCGACCAGAC 60.048 66.667 0.00 0.00 0.00 3.51
873 3541 2.874664 CGAAACCCCCGACCAGACA 61.875 63.158 0.00 0.00 0.00 3.41
875 3543 0.605589 GAAACCCCCGACCAGACAAG 60.606 60.000 0.00 0.00 0.00 3.16
876 3544 1.057851 AAACCCCCGACCAGACAAGA 61.058 55.000 0.00 0.00 0.00 3.02
877 3545 1.765597 AACCCCCGACCAGACAAGAC 61.766 60.000 0.00 0.00 0.00 3.01
878 3546 2.214216 CCCCCGACCAGACAAGACA 61.214 63.158 0.00 0.00 0.00 3.41
879 3547 1.004918 CCCCGACCAGACAAGACAC 60.005 63.158 0.00 0.00 0.00 3.67
880 3548 1.745890 CCCGACCAGACAAGACACA 59.254 57.895 0.00 0.00 0.00 3.72
881 3549 0.319900 CCCGACCAGACAAGACACAG 60.320 60.000 0.00 0.00 0.00 3.66
882 3550 0.673985 CCGACCAGACAAGACACAGA 59.326 55.000 0.00 0.00 0.00 3.41
883 3551 1.336332 CCGACCAGACAAGACACAGAG 60.336 57.143 0.00 0.00 0.00 3.35
884 3552 1.789506 GACCAGACAAGACACAGAGC 58.210 55.000 0.00 0.00 0.00 4.09
885 3553 1.069204 GACCAGACAAGACACAGAGCA 59.931 52.381 0.00 0.00 0.00 4.26
886 3554 1.696336 ACCAGACAAGACACAGAGCAT 59.304 47.619 0.00 0.00 0.00 3.79
888 3556 2.074576 CAGACAAGACACAGAGCATGG 58.925 52.381 0.00 0.00 0.00 3.66
889 3557 1.973515 AGACAAGACACAGAGCATGGA 59.026 47.619 0.00 0.00 0.00 3.41
890 3558 2.570752 AGACAAGACACAGAGCATGGAT 59.429 45.455 0.00 0.00 0.00 3.41
892 3560 4.118410 GACAAGACACAGAGCATGGATAG 58.882 47.826 0.00 0.00 0.00 2.08
894 3562 1.068281 AGACACAGAGCATGGATAGCG 59.932 52.381 0.00 0.00 37.01 4.26
896 3564 1.070445 ACAGAGCATGGATAGCGGC 59.930 57.895 0.00 0.00 37.01 6.53
897 3565 2.025969 CAGAGCATGGATAGCGGCG 61.026 63.158 0.51 0.51 37.01 6.46
898 3566 2.740055 GAGCATGGATAGCGGCGG 60.740 66.667 9.78 0.00 37.01 6.13
899 3567 4.996434 AGCATGGATAGCGGCGGC 62.996 66.667 9.78 8.43 40.37 6.53
901 3569 4.969196 CATGGATAGCGGCGGCGT 62.969 66.667 32.35 20.67 46.35 5.68
902 3570 4.969196 ATGGATAGCGGCGGCGTG 62.969 66.667 32.35 6.35 46.35 5.34
915 3583 3.627218 GCGTGCGGCTATCGGTTC 61.627 66.667 0.00 0.00 39.69 3.62
916 3584 2.960129 CGTGCGGCTATCGGTTCC 60.960 66.667 0.00 0.00 39.69 3.62
918 3586 3.454573 TGCGGCTATCGGTTCCGT 61.455 61.111 11.04 1.95 44.58 4.69
919 3587 2.657620 GCGGCTATCGGTTCCGTC 60.658 66.667 11.04 0.83 44.58 4.79
920 3588 2.027169 CGGCTATCGGTTCCGTCC 59.973 66.667 11.04 7.57 38.47 4.79
1307 6756 4.664677 GACCTGGTGCACGACGCT 62.665 66.667 11.45 0.00 43.06 5.07
1371 6862 7.011109 ACGAAACAATTTCCTATGAACCTATCG 59.989 37.037 0.00 0.00 36.30 2.92
1416 6918 1.133792 ACTCCAGTTGGGGAAACAGTG 60.134 52.381 4.74 0.00 41.61 3.66
1507 10747 6.151691 TGTTGAGATTTCAGTTAATTGCTGC 58.848 36.000 6.90 0.00 34.15 5.25
1531 10777 8.432013 TGCTTCTTGGCTGAGAGATATTTATTA 58.568 33.333 0.00 0.00 0.00 0.98
1673 10945 4.254492 GGTTTCGAATCCTTCAGCTAACT 58.746 43.478 16.50 0.00 0.00 2.24
1686 10960 9.733556 TCCTTCAGCTAACTAAATGTCATTTTA 57.266 29.630 15.77 2.60 33.82 1.52
1699 10981 5.794687 TGTCATTTTATCCACTTGTAGCG 57.205 39.130 0.00 0.00 0.00 4.26
1724 11006 2.543861 CGAGGGACCAACATATCAGTCG 60.544 54.545 0.00 0.00 0.00 4.18
1767 11051 3.117888 GGAAAGCATAGGAGGGAATGTGA 60.118 47.826 0.00 0.00 0.00 3.58
1777 11061 5.186198 AGGAGGGAATGTGAGATTTAAACG 58.814 41.667 0.00 0.00 0.00 3.60
1821 11273 9.001542 TCTCAACTTCTCAAGTAGTAGTACTTC 57.998 37.037 18.27 3.22 44.81 3.01
1861 11400 5.363939 GACCAAGATGACTCCTTTATCCTG 58.636 45.833 0.00 0.00 0.00 3.86
1926 11466 1.618837 TCAGGGAGTGCTGACAGTTAC 59.381 52.381 3.99 4.25 0.00 2.50
1935 11477 1.279271 GCTGACAGTTACATCCCTGGT 59.721 52.381 3.99 0.00 32.90 4.00
1966 11840 0.758123 GCAGAGGATGGAAGGAGAGG 59.242 60.000 0.00 0.00 0.00 3.69
1978 11853 1.130054 AGGAGAGGCCAGTTGCAGAA 61.130 55.000 5.01 0.00 43.89 3.02
2009 11952 8.628630 TGACATTCAATTTAGTCCATGTGTTA 57.371 30.769 0.00 0.00 0.00 2.41
2019 11962 8.974060 TTTAGTCCATGTGTTATTAGGAATCC 57.026 34.615 0.00 0.00 0.00 3.01
2023 11966 6.483640 GTCCATGTGTTATTAGGAATCCTCAC 59.516 42.308 4.42 8.12 34.61 3.51
2050 11993 4.167319 ACCCATGCCTTATTTGGAAAGTT 58.833 39.130 0.00 0.00 31.94 2.66
2051 11994 4.020307 ACCCATGCCTTATTTGGAAAGTTG 60.020 41.667 0.00 0.00 31.94 3.16
2052 11995 4.222588 CCCATGCCTTATTTGGAAAGTTGA 59.777 41.667 0.00 0.00 31.94 3.18
2356 12326 1.392710 AACCCGAGCTACCATCTCCG 61.393 60.000 0.00 0.00 0.00 4.63
2588 12563 0.872388 GCTAACCACGTCCCAAACAG 59.128 55.000 0.00 0.00 0.00 3.16
2816 12792 9.180678 GATTTTAATACGCAAAGGAACCATATG 57.819 33.333 0.00 0.00 0.00 1.78
2824 12800 5.278414 CGCAAAGGAACCATATGCATAATGA 60.278 40.000 11.13 0.00 36.84 2.57
2930 12920 4.431809 TGTTGCAACTGGAAACAAGAATG 58.568 39.130 28.61 0.00 42.06 2.67
2952 12943 4.259356 GCTCGGTTTCCTTATTAGTTGGT 58.741 43.478 0.00 0.00 0.00 3.67
3045 13037 8.106462 TGGGTCAAGTCAAATAATCACATAGAA 58.894 33.333 0.00 0.00 0.00 2.10
3046 13038 8.616076 GGGTCAAGTCAAATAATCACATAGAAG 58.384 37.037 0.00 0.00 0.00 2.85
3047 13039 8.616076 GGTCAAGTCAAATAATCACATAGAAGG 58.384 37.037 0.00 0.00 0.00 3.46
3048 13040 8.616076 GTCAAGTCAAATAATCACATAGAAGGG 58.384 37.037 0.00 0.00 0.00 3.95
3049 13041 8.548025 TCAAGTCAAATAATCACATAGAAGGGA 58.452 33.333 0.00 0.00 0.00 4.20
3050 13042 8.834465 CAAGTCAAATAATCACATAGAAGGGAG 58.166 37.037 0.00 0.00 0.00 4.30
3093 13086 2.408271 TGGACACTCTTCATGGATGC 57.592 50.000 0.00 0.00 0.00 3.91
3151 13253 4.298626 TGTTAGAGGGCTGATGAGGTATT 58.701 43.478 0.00 0.00 0.00 1.89
3164 13266 3.031736 TGAGGTATTGACTAGGAGGCAC 58.968 50.000 0.00 0.00 29.12 5.01
3166 13268 3.034635 AGGTATTGACTAGGAGGCACTG 58.965 50.000 0.00 0.00 41.55 3.66
3167 13269 2.766828 GGTATTGACTAGGAGGCACTGT 59.233 50.000 0.00 0.00 41.55 3.55
3168 13270 3.958798 GGTATTGACTAGGAGGCACTGTA 59.041 47.826 0.00 0.00 41.55 2.74
3169 13271 4.038162 GGTATTGACTAGGAGGCACTGTAG 59.962 50.000 0.00 0.00 41.55 2.74
3189 13292 2.502947 AGCTGTAGCCATCACAGATCAA 59.497 45.455 6.67 0.00 45.10 2.57
3205 13308 5.005094 CAGATCAAAAAGGTAACGGGGTAA 58.995 41.667 0.00 0.00 46.39 2.85
3323 13428 5.415701 GTCTTGGATGGATGCAGACTTAAAA 59.584 40.000 0.00 0.00 0.00 1.52
3327 13432 4.500375 GGATGGATGCAGACTTAAAATGCC 60.500 45.833 0.00 0.00 39.22 4.40
3374 14962 8.553696 GTTCTGTTGAAACGATTCCTAACTTAA 58.446 33.333 2.72 0.00 34.49 1.85
3454 15068 0.618981 GTGGGTTTCCTCCTCCGATT 59.381 55.000 0.00 0.00 0.00 3.34
3457 15071 1.280998 GGGTTTCCTCCTCCGATTTGA 59.719 52.381 0.00 0.00 0.00 2.69
3471 15169 4.642885 TCCGATTTGAAATTCCCCACATAC 59.357 41.667 0.00 0.00 0.00 2.39
3542 15669 2.196595 CCACTCCCACCTCTCCAAATA 58.803 52.381 0.00 0.00 0.00 1.40
3804 16180 6.288294 TGCGTAGATAAAGGCTATGAACAAT 58.712 36.000 0.00 0.00 0.00 2.71
3980 16479 3.335356 ATCCCGCTGCCCAAGTCTG 62.335 63.158 0.00 0.00 0.00 3.51
4095 16620 3.933955 CAGACTGAAGAAGCAGAAGATGG 59.066 47.826 0.00 0.00 39.20 3.51
4111 16636 4.388499 GGCAACGAGGGAGCCGAA 62.388 66.667 0.00 0.00 38.86 4.30
4163 16688 2.041762 AGGATCAGAGGGGCAGCA 59.958 61.111 0.00 0.00 0.00 4.41
4179 16704 1.136147 GCAAGCAACATCAGCCTCG 59.864 57.895 0.00 0.00 0.00 4.63
4180 16705 1.580845 GCAAGCAACATCAGCCTCGT 61.581 55.000 0.00 0.00 0.00 4.18
4181 16706 0.877071 CAAGCAACATCAGCCTCGTT 59.123 50.000 0.00 0.00 0.00 3.85
4182 16707 0.877071 AAGCAACATCAGCCTCGTTG 59.123 50.000 0.00 0.00 42.29 4.10
4188 16713 0.674581 CATCAGCCTCGTTGCCAGAA 60.675 55.000 0.00 0.00 0.00 3.02
4222 16759 3.149981 CCAGAGGGTTTCTTTCCAACTC 58.850 50.000 0.00 0.00 32.41 3.01
4233 16770 2.590575 CCAACTCAACGCGGTGGT 60.591 61.111 26.21 18.15 0.00 4.16
4326 16916 2.597217 TTGCTGGACCGCCCTTTG 60.597 61.111 5.97 0.00 35.38 2.77
4415 17132 4.583871 AGTAGTGTAAGTAGTAGCCGTGT 58.416 43.478 0.00 0.00 0.00 4.49
4432 17151 4.937015 GCCGTGTACCTCTGGTTAATTAAA 59.063 41.667 0.00 0.00 37.09 1.52
4440 17159 7.611213 ACCTCTGGTTAATTAAATTCTGTCG 57.389 36.000 0.00 0.00 27.29 4.35
4550 17292 1.675714 GCGACTGTGTTCCCATCATGA 60.676 52.381 0.00 0.00 0.00 3.07
4779 17675 9.575783 GTCTTACATGGAAGAGTTACTTAGAAG 57.424 37.037 21.09 0.00 39.13 2.85
4815 17712 1.316706 ACAGCCCGTCTAGCTCAGTC 61.317 60.000 0.00 0.00 38.95 3.51
5049 18261 2.024273 TCCGAACTTGGGATCTACTCCT 60.024 50.000 0.00 0.00 44.28 3.69
5079 18291 3.879892 GCTAGCATTAACCCTTTCTCTGG 59.120 47.826 10.63 0.00 0.00 3.86
5116 18328 5.290885 CAGATTCAAACACATCATTGCATGG 59.709 40.000 0.00 0.00 0.00 3.66
5117 18329 3.596310 TCAAACACATCATTGCATGGG 57.404 42.857 0.00 0.00 32.91 4.00
5118 18330 2.898612 TCAAACACATCATTGCATGGGT 59.101 40.909 0.00 0.00 42.55 4.51
5121 18333 4.354893 AACACATCATTGCATGGGTTTT 57.645 36.364 0.00 0.00 46.32 2.43
5122 18334 3.929094 ACACATCATTGCATGGGTTTTC 58.071 40.909 0.00 0.00 37.05 2.29
5123 18335 3.264104 CACATCATTGCATGGGTTTTCC 58.736 45.455 0.00 0.00 39.75 3.13
5124 18336 3.055675 CACATCATTGCATGGGTTTTCCT 60.056 43.478 0.00 0.00 40.46 3.36
5125 18337 3.583966 ACATCATTGCATGGGTTTTCCTT 59.416 39.130 0.00 0.00 40.46 3.36
5126 18338 4.041938 ACATCATTGCATGGGTTTTCCTTT 59.958 37.500 0.00 0.00 40.46 3.11
5127 18339 4.270245 TCATTGCATGGGTTTTCCTTTC 57.730 40.909 0.00 0.00 40.46 2.62
5128 18340 3.007831 TCATTGCATGGGTTTTCCTTTCC 59.992 43.478 0.00 0.00 40.46 3.13
5129 18341 0.965439 TGCATGGGTTTTCCTTTCCG 59.035 50.000 0.00 0.00 40.46 4.30
5130 18342 1.253100 GCATGGGTTTTCCTTTCCGA 58.747 50.000 0.00 0.00 40.46 4.55
5131 18343 1.824852 GCATGGGTTTTCCTTTCCGAT 59.175 47.619 0.00 0.00 40.46 4.18
5132 18344 2.233676 GCATGGGTTTTCCTTTCCGATT 59.766 45.455 0.00 0.00 40.46 3.34
5133 18345 3.676049 GCATGGGTTTTCCTTTCCGATTC 60.676 47.826 0.00 0.00 40.46 2.52
5134 18346 2.521126 TGGGTTTTCCTTTCCGATTCC 58.479 47.619 0.00 0.00 40.46 3.01
5135 18347 1.822990 GGGTTTTCCTTTCCGATTCCC 59.177 52.381 0.00 0.00 40.46 3.97
5136 18348 2.556782 GGGTTTTCCTTTCCGATTCCCT 60.557 50.000 0.00 0.00 40.46 4.20
5137 18349 2.753452 GGTTTTCCTTTCCGATTCCCTC 59.247 50.000 0.00 0.00 36.94 4.30
5138 18350 4.726697 GGTTTTCCTTTCCGATTCCCTCG 61.727 52.174 0.00 0.00 41.04 4.63
5139 18351 1.272807 TTCCTTTCCGATTCCCTCGT 58.727 50.000 0.00 0.00 46.18 4.18
5140 18352 2.148446 TCCTTTCCGATTCCCTCGTA 57.852 50.000 0.00 0.00 46.18 3.43
5141 18353 1.753073 TCCTTTCCGATTCCCTCGTAC 59.247 52.381 0.00 0.00 46.18 3.67
5142 18354 1.202498 CCTTTCCGATTCCCTCGTACC 60.202 57.143 0.00 0.00 46.18 3.34
5143 18355 0.826062 TTTCCGATTCCCTCGTACCC 59.174 55.000 0.00 0.00 46.18 3.69
5144 18356 0.032813 TTCCGATTCCCTCGTACCCT 60.033 55.000 0.00 0.00 46.18 4.34
5145 18357 0.032813 TCCGATTCCCTCGTACCCTT 60.033 55.000 0.00 0.00 46.18 3.95
5146 18358 0.828677 CCGATTCCCTCGTACCCTTT 59.171 55.000 0.00 0.00 46.18 3.11
5147 18359 1.472728 CCGATTCCCTCGTACCCTTTG 60.473 57.143 0.00 0.00 46.18 2.77
5148 18360 1.664873 GATTCCCTCGTACCCTTTGC 58.335 55.000 0.00 0.00 0.00 3.68
5149 18361 1.209747 GATTCCCTCGTACCCTTTGCT 59.790 52.381 0.00 0.00 0.00 3.91
5150 18362 1.061546 TTCCCTCGTACCCTTTGCTT 58.938 50.000 0.00 0.00 0.00 3.91
5151 18363 0.611714 TCCCTCGTACCCTTTGCTTC 59.388 55.000 0.00 0.00 0.00 3.86
5152 18364 0.613777 CCCTCGTACCCTTTGCTTCT 59.386 55.000 0.00 0.00 0.00 2.85
5153 18365 1.676014 CCCTCGTACCCTTTGCTTCTG 60.676 57.143 0.00 0.00 0.00 3.02
5154 18366 1.079503 CTCGTACCCTTTGCTTCTGC 58.920 55.000 0.00 0.00 40.20 4.26
5155 18367 0.321298 TCGTACCCTTTGCTTCTGCC 60.321 55.000 0.00 0.00 38.71 4.85
5156 18368 1.305930 CGTACCCTTTGCTTCTGCCC 61.306 60.000 0.00 0.00 38.71 5.36
5157 18369 0.038310 GTACCCTTTGCTTCTGCCCT 59.962 55.000 0.00 0.00 38.71 5.19
5158 18370 0.328258 TACCCTTTGCTTCTGCCCTC 59.672 55.000 0.00 0.00 38.71 4.30
5159 18371 2.042831 CCCTTTGCTTCTGCCCTCG 61.043 63.158 0.00 0.00 38.71 4.63
5160 18372 1.302832 CCTTTGCTTCTGCCCTCGT 60.303 57.895 0.00 0.00 38.71 4.18
5161 18373 1.580845 CCTTTGCTTCTGCCCTCGTG 61.581 60.000 0.00 0.00 38.71 4.35
5162 18374 2.192608 CTTTGCTTCTGCCCTCGTGC 62.193 60.000 0.00 0.00 38.71 5.34
5164 18376 4.742201 GCTTCTGCCCTCGTGCGA 62.742 66.667 0.00 0.00 0.00 5.10
5165 18377 2.048222 CTTCTGCCCTCGTGCGAA 60.048 61.111 0.00 0.00 0.00 4.70
5166 18378 2.357034 TTCTGCCCTCGTGCGAAC 60.357 61.111 0.00 0.00 0.00 3.95
5167 18379 2.771763 CTTCTGCCCTCGTGCGAACT 62.772 60.000 0.00 0.00 0.00 3.01
5168 18380 1.529152 TTCTGCCCTCGTGCGAACTA 61.529 55.000 0.00 0.00 0.00 2.24
5169 18381 1.141881 CTGCCCTCGTGCGAACTAT 59.858 57.895 0.00 0.00 0.00 2.12
5170 18382 0.872021 CTGCCCTCGTGCGAACTATC 60.872 60.000 0.00 0.00 0.00 2.08
5171 18383 1.141019 GCCCTCGTGCGAACTATCA 59.859 57.895 0.00 0.00 0.00 2.15
5172 18384 0.249489 GCCCTCGTGCGAACTATCAT 60.249 55.000 0.00 0.00 0.00 2.45
5173 18385 1.772182 CCCTCGTGCGAACTATCATC 58.228 55.000 0.00 0.00 0.00 2.92
5174 18386 1.338337 CCCTCGTGCGAACTATCATCT 59.662 52.381 0.00 0.00 0.00 2.90
5175 18387 2.552743 CCCTCGTGCGAACTATCATCTA 59.447 50.000 0.00 0.00 0.00 1.98
5176 18388 3.365465 CCCTCGTGCGAACTATCATCTAG 60.365 52.174 0.00 0.00 0.00 2.43
5177 18389 3.365465 CCTCGTGCGAACTATCATCTAGG 60.365 52.174 0.00 0.00 0.00 3.02
5178 18390 2.552743 TCGTGCGAACTATCATCTAGGG 59.447 50.000 0.00 0.00 0.00 3.53
5179 18391 2.293677 CGTGCGAACTATCATCTAGGGT 59.706 50.000 0.00 0.00 0.00 4.34
5180 18392 3.243434 CGTGCGAACTATCATCTAGGGTT 60.243 47.826 0.00 0.00 0.00 4.11
5181 18393 4.694339 GTGCGAACTATCATCTAGGGTTT 58.306 43.478 0.00 0.00 0.00 3.27
5182 18394 4.745620 GTGCGAACTATCATCTAGGGTTTC 59.254 45.833 0.00 0.00 0.00 2.78
5183 18395 4.202223 TGCGAACTATCATCTAGGGTTTCC 60.202 45.833 0.00 0.00 0.00 3.13
5184 18396 4.039366 GCGAACTATCATCTAGGGTTTCCT 59.961 45.833 0.00 0.00 46.96 3.36
5185 18397 5.453480 GCGAACTATCATCTAGGGTTTCCTT 60.453 44.000 0.00 0.00 41.56 3.36
5186 18398 5.986135 CGAACTATCATCTAGGGTTTCCTTG 59.014 44.000 0.00 0.00 41.56 3.61
5187 18399 6.407074 CGAACTATCATCTAGGGTTTCCTTGT 60.407 42.308 0.00 0.00 41.56 3.16
5188 18400 6.487299 ACTATCATCTAGGGTTTCCTTGTC 57.513 41.667 0.00 0.00 41.56 3.18
5189 18401 6.206042 ACTATCATCTAGGGTTTCCTTGTCT 58.794 40.000 0.00 0.00 41.56 3.41
5190 18402 5.622346 ATCATCTAGGGTTTCCTTGTCTC 57.378 43.478 0.00 0.00 41.56 3.36
5191 18403 4.689062 TCATCTAGGGTTTCCTTGTCTCT 58.311 43.478 0.00 0.00 41.56 3.10
5192 18404 4.712337 TCATCTAGGGTTTCCTTGTCTCTC 59.288 45.833 0.00 0.00 41.56 3.20
5193 18405 3.090037 TCTAGGGTTTCCTTGTCTCTCG 58.910 50.000 0.00 0.00 41.56 4.04
5194 18406 0.321996 AGGGTTTCCTTGTCTCTCGC 59.678 55.000 0.00 0.00 41.56 5.03
5195 18407 0.673956 GGGTTTCCTTGTCTCTCGCC 60.674 60.000 0.00 0.00 0.00 5.54
5196 18408 1.014564 GGTTTCCTTGTCTCTCGCCG 61.015 60.000 0.00 0.00 0.00 6.46
5197 18409 1.014564 GTTTCCTTGTCTCTCGCCGG 61.015 60.000 0.00 0.00 0.00 6.13
5198 18410 2.781595 TTTCCTTGTCTCTCGCCGGC 62.782 60.000 19.07 19.07 0.00 6.13
5222 18434 3.145551 GGTCCGCTTCGCCTCCTA 61.146 66.667 0.00 0.00 0.00 2.94
5223 18435 2.413765 GTCCGCTTCGCCTCCTAG 59.586 66.667 0.00 0.00 0.00 3.02
5224 18436 2.119655 GTCCGCTTCGCCTCCTAGA 61.120 63.158 0.00 0.00 0.00 2.43
5225 18437 2.119655 TCCGCTTCGCCTCCTAGAC 61.120 63.158 0.00 0.00 0.00 2.59
5226 18438 2.415608 CCGCTTCGCCTCCTAGACA 61.416 63.158 0.00 0.00 0.00 3.41
5227 18439 1.226717 CGCTTCGCCTCCTAGACAC 60.227 63.158 0.00 0.00 0.00 3.67
5228 18440 1.226717 GCTTCGCCTCCTAGACACG 60.227 63.158 0.00 0.00 0.00 4.49
5229 18441 1.433879 CTTCGCCTCCTAGACACGG 59.566 63.158 0.00 0.00 0.00 4.94
5230 18442 1.303888 TTCGCCTCCTAGACACGGT 60.304 57.895 0.00 0.00 0.00 4.83
5231 18443 1.592400 TTCGCCTCCTAGACACGGTG 61.592 60.000 6.58 6.58 0.00 4.94
5232 18444 2.893398 GCCTCCTAGACACGGTGG 59.107 66.667 13.48 0.00 38.05 4.61
5233 18445 1.681327 GCCTCCTAGACACGGTGGA 60.681 63.158 13.48 0.00 37.37 4.02
5234 18446 1.043673 GCCTCCTAGACACGGTGGAT 61.044 60.000 13.48 2.85 37.37 3.41
5235 18447 1.033574 CCTCCTAGACACGGTGGATC 58.966 60.000 13.48 1.74 37.37 3.36
5236 18448 1.033574 CTCCTAGACACGGTGGATCC 58.966 60.000 13.48 4.20 0.00 3.36
5237 18449 0.396695 TCCTAGACACGGTGGATCCC 60.397 60.000 9.90 0.00 0.00 3.85
5238 18450 0.686441 CCTAGACACGGTGGATCCCA 60.686 60.000 9.90 0.00 0.00 4.37
5239 18451 0.747255 CTAGACACGGTGGATCCCAG 59.253 60.000 9.90 4.08 32.34 4.45
5245 18457 2.276740 GGTGGATCCCAGCCCTTG 59.723 66.667 9.90 0.00 45.22 3.61
5246 18458 2.440980 GTGGATCCCAGCCCTTGC 60.441 66.667 9.90 0.00 32.34 4.01
5247 18459 3.743017 TGGATCCCAGCCCTTGCC 61.743 66.667 9.90 0.00 38.69 4.52
5248 18460 4.883354 GGATCCCAGCCCTTGCCG 62.883 72.222 0.00 0.00 38.69 5.69
5249 18461 4.883354 GATCCCAGCCCTTGCCGG 62.883 72.222 0.00 0.00 38.69 6.13
5265 18477 4.035102 GGCGGGAGGGCTCTGTTT 62.035 66.667 0.00 0.00 38.40 2.83
5266 18478 2.034221 GCGGGAGGGCTCTGTTTT 59.966 61.111 0.00 0.00 0.00 2.43
5267 18479 1.298667 GCGGGAGGGCTCTGTTTTA 59.701 57.895 0.00 0.00 0.00 1.52
5268 18480 0.744771 GCGGGAGGGCTCTGTTTTAG 60.745 60.000 0.00 0.00 0.00 1.85
5269 18481 0.902531 CGGGAGGGCTCTGTTTTAGA 59.097 55.000 0.00 0.00 0.00 2.10
5270 18482 1.486726 CGGGAGGGCTCTGTTTTAGAT 59.513 52.381 0.00 0.00 34.21 1.98
5271 18483 2.743183 CGGGAGGGCTCTGTTTTAGATG 60.743 54.545 0.00 0.00 34.21 2.90
5272 18484 2.293170 GGAGGGCTCTGTTTTAGATGC 58.707 52.381 0.00 0.00 34.21 3.91
5273 18485 2.092699 GGAGGGCTCTGTTTTAGATGCT 60.093 50.000 0.00 0.00 34.21 3.79
5274 18486 3.615155 GAGGGCTCTGTTTTAGATGCTT 58.385 45.455 0.00 0.00 34.21 3.91
5275 18487 4.013050 GAGGGCTCTGTTTTAGATGCTTT 58.987 43.478 0.00 0.00 34.21 3.51
5276 18488 4.411013 AGGGCTCTGTTTTAGATGCTTTT 58.589 39.130 0.00 0.00 34.21 2.27
5277 18489 4.460731 AGGGCTCTGTTTTAGATGCTTTTC 59.539 41.667 0.00 0.00 34.21 2.29
5278 18490 4.460731 GGGCTCTGTTTTAGATGCTTTTCT 59.539 41.667 0.00 0.00 34.21 2.52
5279 18491 5.397326 GGCTCTGTTTTAGATGCTTTTCTG 58.603 41.667 0.00 0.00 34.21 3.02
5280 18492 5.182001 GGCTCTGTTTTAGATGCTTTTCTGA 59.818 40.000 0.00 0.00 34.21 3.27
5281 18493 6.313252 GCTCTGTTTTAGATGCTTTTCTGAG 58.687 40.000 0.00 0.00 34.21 3.35
5282 18494 6.072783 GCTCTGTTTTAGATGCTTTTCTGAGT 60.073 38.462 0.00 0.00 34.21 3.41
5283 18495 7.521261 GCTCTGTTTTAGATGCTTTTCTGAGTT 60.521 37.037 0.00 0.00 34.21 3.01
5284 18496 8.225603 TCTGTTTTAGATGCTTTTCTGAGTTT 57.774 30.769 0.00 0.00 0.00 2.66
5285 18497 8.686334 TCTGTTTTAGATGCTTTTCTGAGTTTT 58.314 29.630 0.00 0.00 0.00 2.43
5286 18498 8.633075 TGTTTTAGATGCTTTTCTGAGTTTTG 57.367 30.769 0.00 0.00 0.00 2.44
5287 18499 8.250332 TGTTTTAGATGCTTTTCTGAGTTTTGT 58.750 29.630 0.00 0.00 0.00 2.83
5288 18500 9.087424 GTTTTAGATGCTTTTCTGAGTTTTGTT 57.913 29.630 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 9.364989 GTTGCATCCTAAATAGCATTTAAAACA 57.635 29.630 0.00 0.00 36.80 2.83
126 127 8.817100 GGTTGCATCCTAAATAGCATTTAAAAC 58.183 33.333 6.56 0.00 36.80 2.43
129 130 7.896383 AGGTTGCATCCTAAATAGCATTTAA 57.104 32.000 14.90 0.00 36.80 1.52
130 131 7.896383 AAGGTTGCATCCTAAATAGCATTTA 57.104 32.000 16.73 0.00 36.74 1.40
132 133 7.062957 ACTAAGGTTGCATCCTAAATAGCATT 58.937 34.615 16.73 0.78 36.74 3.56
133 134 6.605119 ACTAAGGTTGCATCCTAAATAGCAT 58.395 36.000 16.73 1.48 36.74 3.79
134 135 6.001449 ACTAAGGTTGCATCCTAAATAGCA 57.999 37.500 16.73 0.00 36.74 3.49
135 136 6.944234 AACTAAGGTTGCATCCTAAATAGC 57.056 37.500 16.73 0.00 36.74 2.97
138 139 9.067986 GCTATTAACTAAGGTTGCATCCTAAAT 57.932 33.333 16.73 12.78 36.74 1.40
139 140 8.050325 TGCTATTAACTAAGGTTGCATCCTAAA 58.950 33.333 16.73 7.56 36.74 1.85
140 141 7.497909 GTGCTATTAACTAAGGTTGCATCCTAA 59.502 37.037 16.73 7.50 36.74 2.69
143 144 5.588648 TGTGCTATTAACTAAGGTTGCATCC 59.411 40.000 5.61 5.61 34.68 3.51
145 146 5.064707 CGTGTGCTATTAACTAAGGTTGCAT 59.935 40.000 0.00 0.00 34.68 3.96
147 148 4.628333 TCGTGTGCTATTAACTAAGGTTGC 59.372 41.667 0.00 0.00 36.92 4.17
148 149 6.018994 GGATCGTGTGCTATTAACTAAGGTTG 60.019 42.308 0.00 0.00 36.92 3.77
150 151 5.128171 TGGATCGTGTGCTATTAACTAAGGT 59.872 40.000 0.00 0.00 0.00 3.50
154 155 9.419297 GAAATATGGATCGTGTGCTATTAACTA 57.581 33.333 0.00 0.00 0.00 2.24
155 156 8.150945 AGAAATATGGATCGTGTGCTATTAACT 58.849 33.333 0.00 0.00 0.00 2.24
156 157 8.311650 AGAAATATGGATCGTGTGCTATTAAC 57.688 34.615 0.00 0.00 0.00 2.01
159 160 7.307396 CGAAAGAAATATGGATCGTGTGCTATT 60.307 37.037 0.00 0.00 0.00 1.73
160 161 6.146184 CGAAAGAAATATGGATCGTGTGCTAT 59.854 38.462 0.00 0.00 0.00 2.97
161 162 5.462068 CGAAAGAAATATGGATCGTGTGCTA 59.538 40.000 0.00 0.00 0.00 3.49
162 163 4.271049 CGAAAGAAATATGGATCGTGTGCT 59.729 41.667 0.00 0.00 0.00 4.40
163 164 4.034048 ACGAAAGAAATATGGATCGTGTGC 59.966 41.667 0.00 0.00 41.41 4.57
164 165 5.718649 ACGAAAGAAATATGGATCGTGTG 57.281 39.130 0.00 0.00 41.41 3.82
196 197 3.567164 AGATGTTCATTGCAATCCGGATC 59.433 43.478 19.43 6.82 0.00 3.36
199 200 2.684374 TGAGATGTTCATTGCAATCCGG 59.316 45.455 9.53 0.00 0.00 5.14
210 211 7.894708 TCATTTTGGCTTTAATGAGATGTTCA 58.105 30.769 0.00 0.00 36.22 3.18
211 212 8.761575 TTCATTTTGGCTTTAATGAGATGTTC 57.238 30.769 0.00 0.00 40.65 3.18
213 214 8.031277 GTCTTCATTTTGGCTTTAATGAGATGT 58.969 33.333 0.00 0.00 40.65 3.06
214 215 7.219535 CGTCTTCATTTTGGCTTTAATGAGATG 59.780 37.037 0.00 0.00 40.65 2.90
215 216 7.121168 TCGTCTTCATTTTGGCTTTAATGAGAT 59.879 33.333 0.00 0.00 40.65 2.75
216 217 6.429692 TCGTCTTCATTTTGGCTTTAATGAGA 59.570 34.615 0.00 0.00 40.65 3.27
219 220 6.308766 CCTTCGTCTTCATTTTGGCTTTAATG 59.691 38.462 0.00 0.00 33.96 1.90
220 221 6.208599 TCCTTCGTCTTCATTTTGGCTTTAAT 59.791 34.615 0.00 0.00 0.00 1.40
221 222 5.533154 TCCTTCGTCTTCATTTTGGCTTTAA 59.467 36.000 0.00 0.00 0.00 1.52
222 223 5.067273 TCCTTCGTCTTCATTTTGGCTTTA 58.933 37.500 0.00 0.00 0.00 1.85
226 227 3.915437 TTCCTTCGTCTTCATTTTGGC 57.085 42.857 0.00 0.00 0.00 4.52
228 229 4.219033 CGGTTTCCTTCGTCTTCATTTTG 58.781 43.478 0.00 0.00 0.00 2.44
239 240 3.332034 AGGTTATTGACGGTTTCCTTCG 58.668 45.455 0.00 0.00 0.00 3.79
241 242 3.332034 CGAGGTTATTGACGGTTTCCTT 58.668 45.455 0.00 0.00 0.00 3.36
243 244 2.004733 CCGAGGTTATTGACGGTTTCC 58.995 52.381 0.00 0.00 40.42 3.13
245 246 1.270947 TGCCGAGGTTATTGACGGTTT 60.271 47.619 0.00 0.00 45.91 3.27
248 249 1.006832 CTTGCCGAGGTTATTGACGG 58.993 55.000 0.00 0.00 46.74 4.79
249 250 1.659098 GTCTTGCCGAGGTTATTGACG 59.341 52.381 0.00 0.00 0.00 4.35
253 254 4.451900 CAATAGGTCTTGCCGAGGTTATT 58.548 43.478 0.00 0.00 43.70 1.40
257 258 0.541863 CCAATAGGTCTTGCCGAGGT 59.458 55.000 0.00 0.00 43.70 3.85
258 259 0.179045 CCCAATAGGTCTTGCCGAGG 60.179 60.000 0.00 0.00 43.70 4.63
259 260 0.179045 CCCCAATAGGTCTTGCCGAG 60.179 60.000 0.00 0.00 43.70 4.63
260 261 0.912487 ACCCCAATAGGTCTTGCCGA 60.912 55.000 0.00 0.00 43.70 5.54
261 262 1.607612 ACCCCAATAGGTCTTGCCG 59.392 57.895 0.00 0.00 43.70 5.69
268 269 3.265995 CCACAACTAAGACCCCAATAGGT 59.734 47.826 0.00 0.00 45.12 3.08
270 271 4.569719 ACCACAACTAAGACCCCAATAG 57.430 45.455 0.00 0.00 0.00 1.73
271 272 5.548836 AGTAACCACAACTAAGACCCCAATA 59.451 40.000 0.00 0.00 0.00 1.90
272 273 3.895704 AACCACAACTAAGACCCCAAT 57.104 42.857 0.00 0.00 0.00 3.16
273 274 3.717913 AGTAACCACAACTAAGACCCCAA 59.282 43.478 0.00 0.00 0.00 4.12
274 275 3.071892 CAGTAACCACAACTAAGACCCCA 59.928 47.826 0.00 0.00 0.00 4.96
275 276 3.558533 CCAGTAACCACAACTAAGACCCC 60.559 52.174 0.00 0.00 0.00 4.95
278 279 3.072211 GCCCAGTAACCACAACTAAGAC 58.928 50.000 0.00 0.00 0.00 3.01
279 280 2.976882 AGCCCAGTAACCACAACTAAGA 59.023 45.455 0.00 0.00 0.00 2.10
280 281 3.418684 AGCCCAGTAACCACAACTAAG 57.581 47.619 0.00 0.00 0.00 2.18
282 283 2.835764 CCTAGCCCAGTAACCACAACTA 59.164 50.000 0.00 0.00 0.00 2.24
283 284 1.628846 CCTAGCCCAGTAACCACAACT 59.371 52.381 0.00 0.00 0.00 3.16
286 287 1.559065 GCCCTAGCCCAGTAACCACA 61.559 60.000 0.00 0.00 0.00 4.17
287 288 1.223763 GCCCTAGCCCAGTAACCAC 59.776 63.158 0.00 0.00 0.00 4.16
299 300 0.463116 AAAATACCGCACGGCCCTAG 60.463 55.000 9.43 0.00 39.32 3.02
300 301 0.462403 GAAAATACCGCACGGCCCTA 60.462 55.000 9.43 0.00 39.32 3.53
301 302 1.747745 GAAAATACCGCACGGCCCT 60.748 57.895 9.43 0.00 39.32 5.19
302 303 1.310216 AAGAAAATACCGCACGGCCC 61.310 55.000 9.43 0.00 39.32 5.80
304 305 1.084289 AGAAGAAAATACCGCACGGC 58.916 50.000 9.43 0.00 39.32 5.68
305 306 3.000727 AGAAGAAGAAAATACCGCACGG 58.999 45.455 7.71 7.71 42.03 4.94
306 307 5.968387 ATAGAAGAAGAAAATACCGCACG 57.032 39.130 0.00 0.00 0.00 5.34
308 309 5.220586 CGCAATAGAAGAAGAAAATACCGCA 60.221 40.000 0.00 0.00 0.00 5.69
309 310 5.006358 TCGCAATAGAAGAAGAAAATACCGC 59.994 40.000 0.00 0.00 0.00 5.68
310 311 6.411652 GTCGCAATAGAAGAAGAAAATACCG 58.588 40.000 0.00 0.00 0.00 4.02
312 313 5.896974 GCGTCGCAATAGAAGAAGAAAATAC 59.103 40.000 13.44 0.00 0.00 1.89
313 314 5.579119 TGCGTCGCAATAGAAGAAGAAAATA 59.421 36.000 19.38 0.00 34.76 1.40
314 315 4.391830 TGCGTCGCAATAGAAGAAGAAAAT 59.608 37.500 19.38 0.00 34.76 1.82
315 316 3.743911 TGCGTCGCAATAGAAGAAGAAAA 59.256 39.130 19.38 0.00 34.76 2.29
317 318 2.666508 GTGCGTCGCAATAGAAGAAGAA 59.333 45.455 23.58 0.00 41.47 2.52
319 320 1.992667 TGTGCGTCGCAATAGAAGAAG 59.007 47.619 23.58 0.00 41.47 2.85
322 323 1.321743 GTCTGTGCGTCGCAATAGAAG 59.678 52.381 27.13 17.84 41.47 2.85
324 325 0.526211 AGTCTGTGCGTCGCAATAGA 59.474 50.000 23.58 23.68 41.47 1.98
325 326 0.917259 GAGTCTGTGCGTCGCAATAG 59.083 55.000 23.58 21.83 41.47 1.73
326 327 0.526211 AGAGTCTGTGCGTCGCAATA 59.474 50.000 23.58 13.20 41.47 1.90
327 328 0.319900 AAGAGTCTGTGCGTCGCAAT 60.320 50.000 23.58 5.66 41.47 3.56
329 330 0.529773 AAAAGAGTCTGTGCGTCGCA 60.530 50.000 17.58 17.58 35.60 5.10
330 331 0.111089 CAAAAGAGTCTGTGCGTCGC 60.111 55.000 11.10 11.10 0.00 5.19
331 332 0.111089 GCAAAAGAGTCTGTGCGTCG 60.111 55.000 12.04 0.00 0.00 5.12
332 333 1.221414 AGCAAAAGAGTCTGTGCGTC 58.779 50.000 18.55 0.00 41.90 5.19
333 334 2.224066 ACTAGCAAAAGAGTCTGTGCGT 60.224 45.455 18.55 11.49 41.90 5.24
334 335 2.408050 ACTAGCAAAAGAGTCTGTGCG 58.592 47.619 18.55 11.00 41.90 5.34
336 337 6.260870 TCTCTACTAGCAAAAGAGTCTGTG 57.739 41.667 0.00 0.00 38.32 3.66
338 339 9.862371 TTATTTCTCTACTAGCAAAAGAGTCTG 57.138 33.333 0.00 0.00 38.32 3.51
340 341 8.813282 GCTTATTTCTCTACTAGCAAAAGAGTC 58.187 37.037 10.20 0.00 38.32 3.36
342 343 7.766278 TGGCTTATTTCTCTACTAGCAAAAGAG 59.234 37.037 0.00 0.00 38.48 2.85
343 344 7.620880 TGGCTTATTTCTCTACTAGCAAAAGA 58.379 34.615 0.00 0.00 0.00 2.52
344 345 7.849804 TGGCTTATTTCTCTACTAGCAAAAG 57.150 36.000 0.00 0.00 0.00 2.27
345 346 8.630054 TTTGGCTTATTTCTCTACTAGCAAAA 57.370 30.769 0.00 0.00 31.17 2.44
347 348 7.620880 TCTTTGGCTTATTTCTCTACTAGCAA 58.379 34.615 0.00 0.00 0.00 3.91
348 349 7.182817 TCTTTGGCTTATTTCTCTACTAGCA 57.817 36.000 0.00 0.00 0.00 3.49
349 350 8.555361 CATTCTTTGGCTTATTTCTCTACTAGC 58.445 37.037 0.00 0.00 0.00 3.42
352 353 9.520515 TTTCATTCTTTGGCTTATTTCTCTACT 57.479 29.630 0.00 0.00 0.00 2.57
383 384 2.693074 ACTCCAAGGCGTCAACATTTTT 59.307 40.909 0.00 0.00 0.00 1.94
385 386 1.981256 ACTCCAAGGCGTCAACATTT 58.019 45.000 0.00 0.00 0.00 2.32
387 388 2.851263 TTACTCCAAGGCGTCAACAT 57.149 45.000 0.00 0.00 0.00 2.71
389 390 3.974871 TTTTTACTCCAAGGCGTCAAC 57.025 42.857 0.00 0.00 0.00 3.18
417 418 9.559732 TCACTGTCTTATTTCTTCTTTTCATGA 57.440 29.630 0.00 0.00 0.00 3.07
418 419 9.823098 CTCACTGTCTTATTTCTTCTTTTCATG 57.177 33.333 0.00 0.00 0.00 3.07
419 420 9.784531 TCTCACTGTCTTATTTCTTCTTTTCAT 57.215 29.630 0.00 0.00 0.00 2.57
473 474 9.829507 CTCTGTCTTATTTCATTCTACTCCATT 57.170 33.333 0.00 0.00 0.00 3.16
474 475 9.206690 TCTCTGTCTTATTTCATTCTACTCCAT 57.793 33.333 0.00 0.00 0.00 3.41
501 502 7.914427 ACTCCATTTTTCCCTTACTCTTTTT 57.086 32.000 0.00 0.00 0.00 1.94
502 503 8.445588 TCTACTCCATTTTTCCCTTACTCTTTT 58.554 33.333 0.00 0.00 0.00 2.27
503 504 7.985589 TCTACTCCATTTTTCCCTTACTCTTT 58.014 34.615 0.00 0.00 0.00 2.52
504 505 7.569599 TCTACTCCATTTTTCCCTTACTCTT 57.430 36.000 0.00 0.00 0.00 2.85
505 506 7.569599 TTCTACTCCATTTTTCCCTTACTCT 57.430 36.000 0.00 0.00 0.00 3.24
506 507 8.047310 TCATTCTACTCCATTTTTCCCTTACTC 58.953 37.037 0.00 0.00 0.00 2.59
507 508 7.928873 TCATTCTACTCCATTTTTCCCTTACT 58.071 34.615 0.00 0.00 0.00 2.24
508 509 8.575649 TTCATTCTACTCCATTTTTCCCTTAC 57.424 34.615 0.00 0.00 0.00 2.34
509 510 9.768215 ATTTCATTCTACTCCATTTTTCCCTTA 57.232 29.630 0.00 0.00 0.00 2.69
511 512 9.768215 TTATTTCATTCTACTCCATTTTTCCCT 57.232 29.630 0.00 0.00 0.00 4.20
515 516 9.034800 TGCCTTATTTCATTCTACTCCATTTTT 57.965 29.630 0.00 0.00 0.00 1.94
516 517 8.593945 TGCCTTATTTCATTCTACTCCATTTT 57.406 30.769 0.00 0.00 0.00 1.82
517 518 8.055181 TCTGCCTTATTTCATTCTACTCCATTT 58.945 33.333 0.00 0.00 0.00 2.32
518 519 7.577303 TCTGCCTTATTTCATTCTACTCCATT 58.423 34.615 0.00 0.00 0.00 3.16
522 523 8.723942 TTTCTCTGCCTTATTTCATTCTACTC 57.276 34.615 0.00 0.00 0.00 2.59
523 524 9.520515 TTTTTCTCTGCCTTATTTCATTCTACT 57.479 29.630 0.00 0.00 0.00 2.57
560 561 9.429359 CTGACACATTTCTCTATACTCAAGTTT 57.571 33.333 0.00 0.00 0.00 2.66
563 564 8.681806 TCTCTGACACATTTCTCTATACTCAAG 58.318 37.037 0.00 0.00 0.00 3.02
564 565 8.581253 TCTCTGACACATTTCTCTATACTCAA 57.419 34.615 0.00 0.00 0.00 3.02
565 566 8.759481 ATCTCTGACACATTTCTCTATACTCA 57.241 34.615 0.00 0.00 0.00 3.41
593 594 5.523438 AACTCCAAGGCATCGTTTAAAAA 57.477 34.783 0.00 0.00 0.00 1.94
594 595 6.636562 TTAACTCCAAGGCATCGTTTAAAA 57.363 33.333 0.00 0.00 0.00 1.52
595 596 6.487331 TCTTTAACTCCAAGGCATCGTTTAAA 59.513 34.615 0.00 0.00 0.00 1.52
596 597 5.998981 TCTTTAACTCCAAGGCATCGTTTAA 59.001 36.000 0.00 0.00 0.00 1.52
597 598 5.553123 TCTTTAACTCCAAGGCATCGTTTA 58.447 37.500 0.00 0.00 0.00 2.01
599 600 4.015872 TCTTTAACTCCAAGGCATCGTT 57.984 40.909 0.00 0.00 0.00 3.85
602 603 5.926542 GGTTTTTCTTTAACTCCAAGGCATC 59.073 40.000 0.00 0.00 0.00 3.91
603 604 5.602561 AGGTTTTTCTTTAACTCCAAGGCAT 59.397 36.000 0.00 0.00 0.00 4.40
604 605 4.959839 AGGTTTTTCTTTAACTCCAAGGCA 59.040 37.500 0.00 0.00 0.00 4.75
605 606 5.531122 AGGTTTTTCTTTAACTCCAAGGC 57.469 39.130 0.00 0.00 0.00 4.35
606 607 8.038351 TGAAAAGGTTTTTCTTTAACTCCAAGG 58.962 33.333 13.53 0.00 36.09 3.61
607 608 8.869897 GTGAAAAGGTTTTTCTTTAACTCCAAG 58.130 33.333 13.53 0.00 36.09 3.61
608 609 7.542824 CGTGAAAAGGTTTTTCTTTAACTCCAA 59.457 33.333 13.53 0.00 36.09 3.53
610 611 6.474427 CCGTGAAAAGGTTTTTCTTTAACTCC 59.526 38.462 13.53 0.00 36.09 3.85
613 614 7.815398 TTCCGTGAAAAGGTTTTTCTTTAAC 57.185 32.000 13.53 4.80 36.09 2.01
614 615 8.828688 TTTTCCGTGAAAAGGTTTTTCTTTAA 57.171 26.923 13.53 3.31 36.73 1.52
616 617 7.915293 ATTTTCCGTGAAAAGGTTTTTCTTT 57.085 28.000 13.53 0.00 43.33 2.52
617 618 9.438228 TTTATTTTCCGTGAAAAGGTTTTTCTT 57.562 25.926 13.53 1.85 43.33 2.52
618 619 9.607988 ATTTATTTTCCGTGAAAAGGTTTTTCT 57.392 25.926 13.53 2.36 43.33 2.52
667 671 8.767478 ATTTCTTTGTGCCTTATTTCATTCTG 57.233 30.769 0.00 0.00 0.00 3.02
692 700 7.285788 GCGTCGATGTTTTTAAGTTTCTTCTA 58.714 34.615 6.48 0.00 0.00 2.10
697 705 4.611366 CAGGCGTCGATGTTTTTAAGTTTC 59.389 41.667 6.48 0.00 0.00 2.78
700 708 3.395639 TCAGGCGTCGATGTTTTTAAGT 58.604 40.909 6.48 0.00 0.00 2.24
701 709 3.678072 TCTCAGGCGTCGATGTTTTTAAG 59.322 43.478 6.48 0.00 0.00 1.85
702 710 3.655486 TCTCAGGCGTCGATGTTTTTAA 58.345 40.909 6.48 0.00 0.00 1.52
815 3483 6.146673 GGGTTCGATATTATACAAAACGGGAG 59.853 42.308 0.00 0.00 0.00 4.30
820 3488 8.882415 TCAGAGGGTTCGATATTATACAAAAC 57.118 34.615 0.00 0.00 0.00 2.43
822 3490 9.706691 GAATCAGAGGGTTCGATATTATACAAA 57.293 33.333 0.00 0.00 0.00 2.83
835 3503 1.407025 GGGGAACGAATCAGAGGGTTC 60.407 57.143 0.00 3.52 38.38 3.62
837 3505 2.297937 GGGGAACGAATCAGAGGGT 58.702 57.895 0.00 0.00 0.00 4.34
849 3517 3.639361 TCGGGGGTTTCGGGGAAC 61.639 66.667 0.00 0.00 0.00 3.62
850 3518 3.639361 GTCGGGGGTTTCGGGGAA 61.639 66.667 0.00 0.00 0.00 3.97
853 3521 4.404098 CTGGTCGGGGGTTTCGGG 62.404 72.222 0.00 0.00 0.00 5.14
855 3523 2.047560 GTCTGGTCGGGGGTTTCG 60.048 66.667 0.00 0.00 0.00 3.46
856 3524 0.605589 CTTGTCTGGTCGGGGGTTTC 60.606 60.000 0.00 0.00 0.00 2.78
861 3529 1.004918 GTGTCTTGTCTGGTCGGGG 60.005 63.158 0.00 0.00 0.00 5.73
862 3530 0.319900 CTGTGTCTTGTCTGGTCGGG 60.320 60.000 0.00 0.00 0.00 5.14
863 3531 0.673985 TCTGTGTCTTGTCTGGTCGG 59.326 55.000 0.00 0.00 0.00 4.79
864 3532 1.932604 GCTCTGTGTCTTGTCTGGTCG 60.933 57.143 0.00 0.00 0.00 4.79
865 3533 1.069204 TGCTCTGTGTCTTGTCTGGTC 59.931 52.381 0.00 0.00 0.00 4.02
867 3535 2.074576 CATGCTCTGTGTCTTGTCTGG 58.925 52.381 0.00 0.00 0.00 3.86
868 3536 2.074576 CCATGCTCTGTGTCTTGTCTG 58.925 52.381 0.00 0.00 0.00 3.51
870 3538 2.462456 TCCATGCTCTGTGTCTTGTC 57.538 50.000 0.00 0.00 0.00 3.18
871 3539 3.681034 GCTATCCATGCTCTGTGTCTTGT 60.681 47.826 0.00 0.00 0.00 3.16
872 3540 2.871022 GCTATCCATGCTCTGTGTCTTG 59.129 50.000 0.00 0.00 0.00 3.02
873 3541 2.482664 CGCTATCCATGCTCTGTGTCTT 60.483 50.000 0.00 0.00 0.00 3.01
875 3543 1.495878 CGCTATCCATGCTCTGTGTC 58.504 55.000 0.00 0.00 0.00 3.67
876 3544 0.105593 CCGCTATCCATGCTCTGTGT 59.894 55.000 0.00 0.00 0.00 3.72
877 3545 1.226686 GCCGCTATCCATGCTCTGTG 61.227 60.000 0.00 0.00 0.00 3.66
878 3546 1.070445 GCCGCTATCCATGCTCTGT 59.930 57.895 0.00 0.00 0.00 3.41
879 3547 2.025969 CGCCGCTATCCATGCTCTG 61.026 63.158 0.00 0.00 0.00 3.35
880 3548 2.341543 CGCCGCTATCCATGCTCT 59.658 61.111 0.00 0.00 0.00 4.09
881 3549 2.740055 CCGCCGCTATCCATGCTC 60.740 66.667 0.00 0.00 0.00 4.26
882 3550 4.996434 GCCGCCGCTATCCATGCT 62.996 66.667 0.00 0.00 0.00 3.79
884 3552 4.969196 ACGCCGCCGCTATCCATG 62.969 66.667 0.00 0.00 38.22 3.66
885 3553 4.969196 CACGCCGCCGCTATCCAT 62.969 66.667 0.00 0.00 38.22 3.41
898 3566 3.627218 GAACCGATAGCCGCACGC 61.627 66.667 0.00 0.00 36.84 5.34
899 3567 2.960129 GGAACCGATAGCCGCACG 60.960 66.667 0.00 0.00 36.84 5.34
900 3568 2.960129 CGGAACCGATAGCCGCAC 60.960 66.667 7.53 0.00 42.83 5.34
1257 6704 7.874016 TGAAGCTACGAAACCTAGTAAATTTCA 59.126 33.333 0.00 0.00 32.89 2.69
1307 6756 1.292223 GTAGCACCAGAGCCGTTGA 59.708 57.895 0.00 0.00 34.23 3.18
1319 6768 4.072131 TCACCAATTGAAGAAGGTAGCAC 58.928 43.478 7.12 0.00 32.01 4.40
1371 6862 4.878397 CACAACATTACTCCCTCTGAATCC 59.122 45.833 0.00 0.00 0.00 3.01
1416 6918 5.144692 TCTGCACATCCTCTATTATGCTC 57.855 43.478 0.00 0.00 34.18 4.26
1474 10714 5.068636 ACTGAAATCTCAACAGAGCACATT 58.931 37.500 0.00 0.00 35.85 2.71
1507 10747 9.434420 CCTAATAAATATCTCTCAGCCAAGAAG 57.566 37.037 0.00 0.00 0.00 2.85
1582 10840 6.681777 AGCTTTGATTGTTGTGTTCTTATCC 58.318 36.000 0.00 0.00 0.00 2.59
1583 10841 7.862372 TGAAGCTTTGATTGTTGTGTTCTTATC 59.138 33.333 0.00 0.00 0.00 1.75
1673 10945 8.394877 CGCTACAAGTGGATAAAATGACATTTA 58.605 33.333 13.69 3.70 0.00 1.40
1767 11051 7.156876 TGGAAATGAATCTGCGTTTAAATCT 57.843 32.000 0.00 0.00 0.00 2.40
1777 11061 7.095270 AGTTGAGAATTTGGAAATGAATCTGC 58.905 34.615 0.00 0.00 0.00 4.26
1821 11273 0.179000 GTCCTCATGGTAGGGTGCTG 59.821 60.000 0.82 0.00 37.24 4.41
1926 11466 0.254178 ACTAGCAGCAACCAGGGATG 59.746 55.000 0.00 0.00 0.00 3.51
1966 11840 3.243501 TGTCAATCTTTTCTGCAACTGGC 60.244 43.478 0.00 0.00 45.13 4.85
1978 11853 9.865321 CATGGACTAAATTGAATGTCAATCTTT 57.135 29.630 4.05 0.51 45.57 2.52
2009 11952 3.459969 GGGTTCAGGTGAGGATTCCTAAT 59.540 47.826 4.86 0.00 31.76 1.73
2018 11961 1.379044 GGCATGGGTTCAGGTGAGG 60.379 63.158 0.00 0.00 0.00 3.86
2019 11962 0.038744 AAGGCATGGGTTCAGGTGAG 59.961 55.000 0.00 0.00 0.00 3.51
2023 11966 2.431782 CCAAATAAGGCATGGGTTCAGG 59.568 50.000 0.00 0.00 0.00 3.86
2050 11993 4.820173 CCTTCAGCAGATAAGCATTCATCA 59.180 41.667 0.00 0.00 36.85 3.07
2051 11994 4.215827 CCCTTCAGCAGATAAGCATTCATC 59.784 45.833 0.00 0.00 36.85 2.92
2052 11995 4.142790 CCCTTCAGCAGATAAGCATTCAT 58.857 43.478 0.00 0.00 36.85 2.57
2123 12066 2.557317 GCATGCCTCCATTTCCAAATG 58.443 47.619 6.36 5.21 44.12 2.32
2588 12563 3.821600 TCCTCCAGTAGATATTGCGTCTC 59.178 47.826 0.00 0.00 0.00 3.36
2816 12792 7.383102 TCTCTTCTCAAAGGTTTCATTATGC 57.617 36.000 0.00 0.00 33.03 3.14
2824 12800 4.037327 GCTTGCTTCTCTTCTCAAAGGTTT 59.963 41.667 0.00 0.00 33.03 3.27
2930 12920 4.259356 ACCAACTAATAAGGAAACCGAGC 58.741 43.478 0.00 0.00 0.00 5.03
3045 13037 2.038659 GCTCTAACAGATGCTCTCCCT 58.961 52.381 0.00 0.00 0.00 4.20
3046 13038 1.069978 GGCTCTAACAGATGCTCTCCC 59.930 57.143 0.00 0.00 0.00 4.30
3047 13039 2.035832 GAGGCTCTAACAGATGCTCTCC 59.964 54.545 7.40 0.00 0.00 3.71
3048 13040 2.692557 TGAGGCTCTAACAGATGCTCTC 59.307 50.000 16.72 0.00 0.00 3.20
3049 13041 2.694628 CTGAGGCTCTAACAGATGCTCT 59.305 50.000 16.72 0.00 34.07 4.09
3050 13042 2.692557 TCTGAGGCTCTAACAGATGCTC 59.307 50.000 16.72 0.00 36.04 4.26
3093 13086 8.331022 CCTTCTATGTGATTATTTGACTTGACG 58.669 37.037 0.00 0.00 0.00 4.35
3151 13253 1.006043 AGCTACAGTGCCTCCTAGTCA 59.994 52.381 0.00 0.00 0.00 3.41
3164 13266 2.428530 TCTGTGATGGCTACAGCTACAG 59.571 50.000 15.57 15.57 43.97 2.74
3165 13267 2.456577 TCTGTGATGGCTACAGCTACA 58.543 47.619 10.76 2.00 43.97 2.74
3166 13268 3.068732 TGATCTGTGATGGCTACAGCTAC 59.931 47.826 10.76 0.00 43.97 3.58
3167 13269 3.299503 TGATCTGTGATGGCTACAGCTA 58.700 45.455 10.76 0.00 43.97 3.32
3168 13270 2.113807 TGATCTGTGATGGCTACAGCT 58.886 47.619 10.76 3.58 43.97 4.24
3169 13271 2.609427 TGATCTGTGATGGCTACAGC 57.391 50.000 10.76 0.00 43.97 4.40
3189 13292 2.449464 GCCATTACCCCGTTACCTTTT 58.551 47.619 0.00 0.00 0.00 2.27
3205 13308 2.840651 CCCCCTAATCTCTATTCGCCAT 59.159 50.000 0.00 0.00 0.00 4.40
3323 13428 1.651240 GCAGTCACATTCTGCGGCAT 61.651 55.000 1.75 0.00 46.39 4.40
3389 14998 7.399191 TGAGTTGGAATAGGCTAAGAGTTCTAA 59.601 37.037 0.00 0.00 0.00 2.10
3454 15068 4.340617 GAGTGGTATGTGGGGAATTTCAA 58.659 43.478 0.00 0.00 0.00 2.69
3457 15071 2.356741 CGGAGTGGTATGTGGGGAATTT 60.357 50.000 0.00 0.00 0.00 1.82
3542 15669 0.179000 CGCTTAGCCTGTTCCTGGAT 59.821 55.000 0.00 0.00 0.00 3.41
3738 16100 0.953960 CCGGCTAACCCACAAGTGAC 60.954 60.000 0.94 0.00 0.00 3.67
3774 16145 3.996480 AGCCTTTATCTACGCAAGATCC 58.004 45.455 4.26 0.00 44.17 3.36
3804 16180 3.568007 ACTTCAAAGCATAACCGCAAGAA 59.432 39.130 0.00 0.00 43.02 2.52
3860 16352 6.583562 AGTACTTTGTGTCAGCTAGAGTTTT 58.416 36.000 0.00 0.00 0.00 2.43
3980 16479 4.803426 CGAGCCAGGTGGAGCGAC 62.803 72.222 0.00 0.00 36.02 5.19
4095 16620 2.815647 CTTCGGCTCCCTCGTTGC 60.816 66.667 0.00 0.00 0.00 4.17
4124 16649 4.357142 TGCGAATAGTTTGGACTACGATC 58.643 43.478 0.00 0.00 40.98 3.69
4128 16653 4.119442 TCCTGCGAATAGTTTGGACTAC 57.881 45.455 0.00 0.00 40.98 2.73
4163 16688 0.877071 CAACGAGGCTGATGTTGCTT 59.123 50.000 9.92 0.00 36.87 3.91
4179 16704 1.228245 TGGCTCTGGTTCTGGCAAC 60.228 57.895 0.00 0.00 33.38 4.17
4180 16705 1.073722 CTGGCTCTGGTTCTGGCAA 59.926 57.895 0.00 0.00 35.89 4.52
4181 16706 1.834856 CTCTGGCTCTGGTTCTGGCA 61.835 60.000 0.00 0.00 35.07 4.92
4182 16707 1.078567 CTCTGGCTCTGGTTCTGGC 60.079 63.158 0.00 0.00 0.00 4.85
4183 16708 1.078567 GCTCTGGCTCTGGTTCTGG 60.079 63.158 0.00 0.00 35.22 3.86
4188 16713 1.988956 CTCTGGCTCTGGCTCTGGT 60.989 63.158 0.00 0.00 38.73 4.00
4326 16916 1.132500 AATAGGAGGGTGCTAGCCAC 58.868 55.000 13.29 10.31 43.90 5.01
4415 17132 8.533657 TCGACAGAATTTAATTAACCAGAGGTA 58.466 33.333 0.00 0.00 33.12 3.08
4482 17213 0.315568 ACAACGACAGGACAGCTCTC 59.684 55.000 0.00 0.00 0.00 3.20
4483 17214 0.753262 AACAACGACAGGACAGCTCT 59.247 50.000 0.00 0.00 0.00 4.09
4550 17292 0.035176 GTGCCACATGCCACCAAAAT 59.965 50.000 0.00 0.00 40.16 1.82
4779 17675 4.507756 GGGCTGTCTTGATTTTGTTTTGAC 59.492 41.667 0.00 0.00 0.00 3.18
4897 17817 3.111098 GCACATGAAAATCGATTCCTGC 58.889 45.455 11.83 8.80 30.77 4.85
4997 17981 0.107831 CTTGGGTCAGGTCCGAAACA 59.892 55.000 0.00 0.00 0.00 2.83
5049 18261 2.495669 GGGTTAATGCTAGCCTTGCAAA 59.504 45.455 13.29 0.00 44.01 3.68
5059 18271 5.253330 CAACCAGAGAAAGGGTTAATGCTA 58.747 41.667 0.00 0.00 45.32 3.49
5079 18291 6.906678 GTGTTTGAATCTGAAATTTTGGCAAC 59.093 34.615 0.00 0.00 0.00 4.17
5116 18328 2.753452 GAGGGAATCGGAAAGGAAAACC 59.247 50.000 0.00 0.00 0.00 3.27
5129 18341 1.209747 AGCAAAGGGTACGAGGGAATC 59.790 52.381 0.00 0.00 0.00 2.52
5130 18342 1.286248 AGCAAAGGGTACGAGGGAAT 58.714 50.000 0.00 0.00 0.00 3.01
5131 18343 1.002773 GAAGCAAAGGGTACGAGGGAA 59.997 52.381 0.00 0.00 0.00 3.97
5132 18344 0.611714 GAAGCAAAGGGTACGAGGGA 59.388 55.000 0.00 0.00 0.00 4.20
5133 18345 0.613777 AGAAGCAAAGGGTACGAGGG 59.386 55.000 0.00 0.00 0.00 4.30
5134 18346 1.726853 CAGAAGCAAAGGGTACGAGG 58.273 55.000 0.00 0.00 0.00 4.63
5135 18347 1.079503 GCAGAAGCAAAGGGTACGAG 58.920 55.000 0.00 0.00 41.58 4.18
5136 18348 0.321298 GGCAGAAGCAAAGGGTACGA 60.321 55.000 0.00 0.00 44.61 3.43
5137 18349 1.305930 GGGCAGAAGCAAAGGGTACG 61.306 60.000 0.00 0.00 44.61 3.67
5138 18350 0.038310 AGGGCAGAAGCAAAGGGTAC 59.962 55.000 0.00 0.00 44.61 3.34
5139 18351 0.328258 GAGGGCAGAAGCAAAGGGTA 59.672 55.000 0.00 0.00 44.61 3.69
5140 18352 1.075659 GAGGGCAGAAGCAAAGGGT 59.924 57.895 0.00 0.00 44.61 4.34
5141 18353 2.042831 CGAGGGCAGAAGCAAAGGG 61.043 63.158 0.00 0.00 44.61 3.95
5142 18354 1.302832 ACGAGGGCAGAAGCAAAGG 60.303 57.895 0.00 0.00 44.61 3.11
5143 18355 1.871772 CACGAGGGCAGAAGCAAAG 59.128 57.895 0.00 0.00 44.61 2.77
5144 18356 2.260869 GCACGAGGGCAGAAGCAAA 61.261 57.895 0.00 0.00 44.61 3.68
5145 18357 2.669569 GCACGAGGGCAGAAGCAA 60.670 61.111 0.00 0.00 44.61 3.91
5147 18359 4.742201 TCGCACGAGGGCAGAAGC 62.742 66.667 0.00 0.00 41.10 3.86
5148 18360 2.048222 TTCGCACGAGGGCAGAAG 60.048 61.111 0.00 0.00 0.00 2.85
5149 18361 1.529152 TAGTTCGCACGAGGGCAGAA 61.529 55.000 0.00 0.00 0.00 3.02
5150 18362 1.320344 ATAGTTCGCACGAGGGCAGA 61.320 55.000 0.00 0.00 0.00 4.26
5151 18363 0.872021 GATAGTTCGCACGAGGGCAG 60.872 60.000 0.00 0.00 0.00 4.85
5152 18364 1.141019 GATAGTTCGCACGAGGGCA 59.859 57.895 0.00 0.00 0.00 5.36
5153 18365 0.249489 ATGATAGTTCGCACGAGGGC 60.249 55.000 0.00 0.00 0.00 5.19
5154 18366 1.338337 AGATGATAGTTCGCACGAGGG 59.662 52.381 0.00 0.00 0.00 4.30
5155 18367 2.783828 AGATGATAGTTCGCACGAGG 57.216 50.000 0.00 0.00 0.00 4.63
5156 18368 3.365465 CCCTAGATGATAGTTCGCACGAG 60.365 52.174 0.00 0.00 0.00 4.18
5157 18369 2.552743 CCCTAGATGATAGTTCGCACGA 59.447 50.000 0.00 0.00 0.00 4.35
5158 18370 2.293677 ACCCTAGATGATAGTTCGCACG 59.706 50.000 0.00 0.00 0.00 5.34
5159 18371 4.323553 AACCCTAGATGATAGTTCGCAC 57.676 45.455 0.00 0.00 0.00 5.34
5160 18372 4.202223 GGAAACCCTAGATGATAGTTCGCA 60.202 45.833 0.00 0.00 0.00 5.10
5161 18373 4.039366 AGGAAACCCTAGATGATAGTTCGC 59.961 45.833 0.00 0.00 30.72 4.70
5162 18374 5.793030 AGGAAACCCTAGATGATAGTTCG 57.207 43.478 0.00 0.00 30.72 3.95
5163 18375 6.890293 ACAAGGAAACCCTAGATGATAGTTC 58.110 40.000 0.00 0.00 32.65 3.01
5164 18376 6.674419 AGACAAGGAAACCCTAGATGATAGTT 59.326 38.462 0.00 0.00 32.65 2.24
5165 18377 6.206042 AGACAAGGAAACCCTAGATGATAGT 58.794 40.000 0.00 0.00 32.65 2.12
5166 18378 6.553100 AGAGACAAGGAAACCCTAGATGATAG 59.447 42.308 0.00 0.00 32.65 2.08
5167 18379 6.444704 AGAGACAAGGAAACCCTAGATGATA 58.555 40.000 0.00 0.00 32.65 2.15
5168 18380 5.284582 AGAGACAAGGAAACCCTAGATGAT 58.715 41.667 0.00 0.00 32.65 2.45
5169 18381 4.689062 AGAGACAAGGAAACCCTAGATGA 58.311 43.478 0.00 0.00 32.65 2.92
5170 18382 4.440802 CGAGAGACAAGGAAACCCTAGATG 60.441 50.000 0.00 0.00 32.65 2.90
5171 18383 3.702045 CGAGAGACAAGGAAACCCTAGAT 59.298 47.826 0.00 0.00 32.65 1.98
5172 18384 3.090037 CGAGAGACAAGGAAACCCTAGA 58.910 50.000 0.00 0.00 32.65 2.43
5173 18385 2.417515 GCGAGAGACAAGGAAACCCTAG 60.418 54.545 0.00 0.00 32.65 3.02
5174 18386 1.549170 GCGAGAGACAAGGAAACCCTA 59.451 52.381 0.00 0.00 32.65 3.53
5175 18387 0.321996 GCGAGAGACAAGGAAACCCT 59.678 55.000 0.00 0.00 34.97 4.34
5176 18388 0.673956 GGCGAGAGACAAGGAAACCC 60.674 60.000 0.00 0.00 40.66 4.11
5177 18389 1.014564 CGGCGAGAGACAAGGAAACC 61.015 60.000 0.00 0.00 41.50 3.27
5178 18390 1.014564 CCGGCGAGAGACAAGGAAAC 61.015 60.000 9.30 0.00 41.50 2.78
5179 18391 1.292223 CCGGCGAGAGACAAGGAAA 59.708 57.895 9.30 0.00 41.50 3.13
5180 18392 2.970639 CCGGCGAGAGACAAGGAA 59.029 61.111 9.30 0.00 41.50 3.36
5181 18393 3.760035 GCCGGCGAGAGACAAGGA 61.760 66.667 12.58 0.00 41.50 3.36
5211 18423 1.313812 ACCGTGTCTAGGAGGCGAAG 61.314 60.000 0.00 0.00 0.00 3.79
5212 18424 1.303888 ACCGTGTCTAGGAGGCGAA 60.304 57.895 0.00 0.00 0.00 4.70
5213 18425 2.044555 CACCGTGTCTAGGAGGCGA 61.045 63.158 0.00 0.00 0.00 5.54
5214 18426 2.490217 CACCGTGTCTAGGAGGCG 59.510 66.667 0.00 0.00 0.00 5.52
5215 18427 1.043673 ATCCACCGTGTCTAGGAGGC 61.044 60.000 0.00 0.00 39.04 4.70
5216 18428 1.033574 GATCCACCGTGTCTAGGAGG 58.966 60.000 0.00 0.00 40.30 4.30
5217 18429 1.033574 GGATCCACCGTGTCTAGGAG 58.966 60.000 6.95 0.00 32.91 3.69
5218 18430 0.396695 GGGATCCACCGTGTCTAGGA 60.397 60.000 15.23 0.00 40.11 2.94
5219 18431 0.686441 TGGGATCCACCGTGTCTAGG 60.686 60.000 15.23 0.00 40.11 3.02
5220 18432 0.747255 CTGGGATCCACCGTGTCTAG 59.253 60.000 15.23 0.00 40.11 2.43
5221 18433 1.327690 GCTGGGATCCACCGTGTCTA 61.328 60.000 15.23 0.00 40.11 2.59
5222 18434 2.660064 GCTGGGATCCACCGTGTCT 61.660 63.158 15.23 0.00 40.11 3.41
5223 18435 2.125106 GCTGGGATCCACCGTGTC 60.125 66.667 15.23 0.00 40.11 3.67
5224 18436 3.717294 GGCTGGGATCCACCGTGT 61.717 66.667 15.23 0.00 40.11 4.49
5225 18437 4.489771 GGGCTGGGATCCACCGTG 62.490 72.222 15.23 0.00 40.11 4.94
5226 18438 4.741239 AGGGCTGGGATCCACCGT 62.741 66.667 15.23 10.40 40.11 4.83
5227 18439 3.411517 AAGGGCTGGGATCCACCG 61.412 66.667 15.23 1.73 40.11 4.94
5228 18440 2.276740 CAAGGGCTGGGATCCACC 59.723 66.667 15.23 11.54 38.08 4.61
5229 18441 2.440980 GCAAGGGCTGGGATCCAC 60.441 66.667 15.23 3.53 36.96 4.02
5230 18442 3.743017 GGCAAGGGCTGGGATCCA 61.743 66.667 15.23 0.00 40.87 3.41
5231 18443 4.883354 CGGCAAGGGCTGGGATCC 62.883 72.222 1.92 1.92 42.93 3.36
5248 18460 2.193087 TAAAACAGAGCCCTCCCGCC 62.193 60.000 0.00 0.00 0.00 6.13
5249 18461 0.744771 CTAAAACAGAGCCCTCCCGC 60.745 60.000 0.00 0.00 0.00 6.13
5250 18462 0.902531 TCTAAAACAGAGCCCTCCCG 59.097 55.000 0.00 0.00 0.00 5.14
5251 18463 2.924421 CATCTAAAACAGAGCCCTCCC 58.076 52.381 0.00 0.00 36.48 4.30
5252 18464 2.092699 AGCATCTAAAACAGAGCCCTCC 60.093 50.000 0.00 0.00 36.48 4.30
5253 18465 3.274095 AGCATCTAAAACAGAGCCCTC 57.726 47.619 0.00 0.00 36.48 4.30
5254 18466 3.728385 AAGCATCTAAAACAGAGCCCT 57.272 42.857 0.00 0.00 36.48 5.19
5255 18467 4.460731 AGAAAAGCATCTAAAACAGAGCCC 59.539 41.667 0.00 0.00 36.48 5.19
5256 18468 5.182001 TCAGAAAAGCATCTAAAACAGAGCC 59.818 40.000 0.00 0.00 36.48 4.70
5257 18469 6.072783 ACTCAGAAAAGCATCTAAAACAGAGC 60.073 38.462 0.00 0.00 36.48 4.09
5258 18470 7.432350 ACTCAGAAAAGCATCTAAAACAGAG 57.568 36.000 0.00 0.00 36.48 3.35
5259 18471 7.807977 AACTCAGAAAAGCATCTAAAACAGA 57.192 32.000 0.00 0.00 37.79 3.41
5260 18472 8.749499 CAAAACTCAGAAAAGCATCTAAAACAG 58.251 33.333 0.00 0.00 0.00 3.16
5261 18473 8.250332 ACAAAACTCAGAAAAGCATCTAAAACA 58.750 29.630 0.00 0.00 0.00 2.83
5262 18474 8.634475 ACAAAACTCAGAAAAGCATCTAAAAC 57.366 30.769 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.