Multiple sequence alignment - TraesCS3A01G386500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G386500 chr3A 100.000 3303 0 0 1 3303 635732655 635729353 0.000000e+00 6100
1 TraesCS3A01G386500 chr3A 81.618 136 19 6 1630 1762 20101804 20101936 1.250000e-19 108
2 TraesCS3A01G386500 chr3D 93.152 3096 101 38 250 3303 496407620 496404594 0.000000e+00 4440
3 TraesCS3A01G386500 chr3D 90.833 240 20 2 27 265 496407880 496407642 1.480000e-83 320
4 TraesCS3A01G386500 chr3D 79.503 161 31 2 1637 1796 16364060 16363901 2.690000e-21 113
5 TraesCS3A01G386500 chr3B 91.947 3092 128 51 258 3303 655423561 655420545 0.000000e+00 4218
6 TraesCS3A01G386500 chr3B 91.633 251 21 0 1 251 655423850 655423600 6.780000e-92 348
7 TraesCS3A01G386500 chr3B 81.301 123 23 0 1674 1796 23929973 23930095 2.100000e-17 100
8 TraesCS3A01G386500 chr5D 75.000 456 84 28 1678 2118 9013277 9012837 2.020000e-42 183
9 TraesCS3A01G386500 chrUn 79.845 258 42 10 1274 1528 124906482 124906732 2.620000e-41 180
10 TraesCS3A01G386500 chr2D 79.923 259 40 12 1274 1528 635650954 635650704 2.620000e-41 180
11 TraesCS3A01G386500 chr2D 90.076 131 5 2 2849 2979 526253317 526253439 2.640000e-36 163
12 TraesCS3A01G386500 chr4D 84.127 189 25 4 1268 1455 36835215 36835399 9.420000e-41 178
13 TraesCS3A01G386500 chr4A 84.699 183 23 4 1274 1455 565437495 565437317 9.420000e-41 178
14 TraesCS3A01G386500 chr4B 83.598 189 26 4 1268 1455 53855866 53856050 4.380000e-39 172
15 TraesCS3A01G386500 chr5A 74.659 367 71 22 1678 2033 7106550 7106195 3.440000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G386500 chr3A 635729353 635732655 3302 True 6100 6100 100.0000 1 3303 1 chr3A.!!$R1 3302
1 TraesCS3A01G386500 chr3D 496404594 496407880 3286 True 2380 4440 91.9925 27 3303 2 chr3D.!!$R2 3276
2 TraesCS3A01G386500 chr3B 655420545 655423850 3305 True 2283 4218 91.7900 1 3303 2 chr3B.!!$R1 3302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 799 0.320771 CCGGGAATAATCAGGAGCCG 60.321 60.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2415 2464 0.606401 CGGCAAAGGAAGAGAAGGCA 60.606 55.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.778842 AAATCGACATAGTGCAATCGAC 57.221 40.909 9.52 0.00 45.50 4.20
31 32 3.407698 ACATAGTGCAATCGACCACAAA 58.592 40.909 13.17 3.85 34.48 2.83
35 36 0.821301 TGCAATCGACCACAAAGCCA 60.821 50.000 0.00 0.00 0.00 4.75
59 60 3.196040 GGCCATCATCTTGCCAGAA 57.804 52.632 0.00 0.00 44.70 3.02
62 63 2.304092 GCCATCATCTTGCCAGAATCA 58.696 47.619 0.00 0.00 30.76 2.57
94 95 2.334946 GCCGCTTGTGCTTGGATCA 61.335 57.895 0.00 0.00 36.97 2.92
98 99 1.741706 CGCTTGTGCTTGGATCATCTT 59.258 47.619 0.00 0.00 36.97 2.40
107 108 4.940046 TGCTTGGATCATCTTCTTTCTGAC 59.060 41.667 0.00 0.00 0.00 3.51
154 155 5.803237 AGTCTATTTATCCTAACCCACGG 57.197 43.478 0.00 0.00 0.00 4.94
495 538 3.184541 CCGTATATAAATCGCCTTCCCG 58.815 50.000 0.00 0.00 0.00 5.14
496 539 2.601763 CGTATATAAATCGCCTTCCCGC 59.398 50.000 0.00 0.00 0.00 6.13
576 619 0.613260 TGTTGTTCCCTCGATCCCTG 59.387 55.000 0.00 0.00 0.00 4.45
582 625 1.152943 CCCTCGATCCCTGTCTCGA 60.153 63.158 0.00 0.00 41.27 4.04
606 652 2.418083 CCTCCTTTTGGCCGCATCC 61.418 63.158 0.00 0.00 40.12 3.51
741 787 1.188871 GCTAGCTAGCTCCCGGGAAT 61.189 60.000 33.71 18.68 45.62 3.01
742 788 1.891450 GCTAGCTAGCTCCCGGGAATA 60.891 57.143 33.71 18.81 45.62 1.75
743 789 2.526432 CTAGCTAGCTCCCGGGAATAA 58.474 52.381 26.68 11.39 0.00 1.40
753 799 0.320771 CCGGGAATAATCAGGAGCCG 60.321 60.000 0.00 0.00 0.00 5.52
761 807 1.333636 AATCAGGAGCCGGAGAGGTG 61.334 60.000 5.05 0.00 43.70 4.00
868 914 1.318491 CGTTTAAATCCGTCGACCGAC 59.682 52.381 10.58 12.09 41.40 4.79
926 972 1.067974 GTCGAGGGGTTTTGGTTTTGG 59.932 52.381 0.00 0.00 0.00 3.28
927 973 1.116308 CGAGGGGTTTTGGTTTTGGT 58.884 50.000 0.00 0.00 0.00 3.67
928 974 1.483004 CGAGGGGTTTTGGTTTTGGTT 59.517 47.619 0.00 0.00 0.00 3.67
929 975 2.093394 CGAGGGGTTTTGGTTTTGGTTT 60.093 45.455 0.00 0.00 0.00 3.27
930 976 3.620226 CGAGGGGTTTTGGTTTTGGTTTT 60.620 43.478 0.00 0.00 0.00 2.43
931 977 3.691575 AGGGGTTTTGGTTTTGGTTTTG 58.308 40.909 0.00 0.00 0.00 2.44
970 1016 1.788308 GTTGTACGCTTGCGTCTTGTA 59.212 47.619 23.90 3.60 0.00 2.41
1081 1127 1.812922 CTCGCCAGGTCAGTGATGC 60.813 63.158 0.00 0.00 0.00 3.91
1166 1212 2.897969 AGTACACCAGGACCTACAACAG 59.102 50.000 0.00 0.00 0.00 3.16
1533 1579 1.343506 CAAGCCAGGTACGTAACGTC 58.656 55.000 4.68 0.00 41.54 4.34
1536 1582 1.514873 CCAGGTACGTAACGTCCGC 60.515 63.158 4.68 0.00 41.54 5.54
1544 1590 1.154150 GTAACGTCCGCGCTACACT 60.154 57.895 5.56 0.00 42.83 3.55
1545 1591 1.130458 GTAACGTCCGCGCTACACTC 61.130 60.000 5.56 0.00 42.83 3.51
1553 1599 1.372499 GCGCTACACTCCACGACAA 60.372 57.895 0.00 0.00 0.00 3.18
1621 1667 0.304705 CTCACGTGCGGCCATTAATC 59.695 55.000 11.67 0.00 0.00 1.75
1656 1702 4.357947 GTGCGTGCAGGAGACGGA 62.358 66.667 11.29 0.00 37.30 4.69
1747 1793 3.184683 CGCTTCGTGCTGCTCTCC 61.185 66.667 0.00 0.00 40.11 3.71
1763 1809 3.842923 CCGAGAGCTGCATCCCGT 61.843 66.667 1.02 0.00 0.00 5.28
1804 1850 2.708255 GACTACCTCGTCGGCTCG 59.292 66.667 0.00 0.00 35.61 5.03
1830 1876 2.803030 AGCTTCGTGGAGGTCTACTA 57.197 50.000 0.00 0.00 0.00 1.82
1912 1958 2.581354 CAGTGGAGGAAGGGCTCG 59.419 66.667 0.00 0.00 0.00 5.03
2035 2081 2.882876 CACTACCTCCCGACCACG 59.117 66.667 0.00 0.00 39.43 4.94
2093 2139 1.518056 GGTGACGTACGTGGACTGGA 61.518 60.000 28.16 0.00 0.00 3.86
2094 2140 0.109873 GTGACGTACGTGGACTGGAG 60.110 60.000 28.16 0.00 0.00 3.86
2181 2227 1.075600 GGAGGAGGAGGTGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
2306 2352 2.313317 CGGTCATGGGGTACTAGCTAA 58.687 52.381 0.00 0.00 0.00 3.09
2401 2450 0.758734 CTCTTGACCACCCTGTGACA 59.241 55.000 0.00 0.00 35.23 3.58
2415 2464 4.215399 CCCTGTGACACGTGAACATAAAAT 59.785 41.667 25.01 0.00 0.00 1.82
2427 2476 6.325596 GTGAACATAAAATGCCTTCTCTTCC 58.674 40.000 0.00 0.00 0.00 3.46
2481 2530 4.511527 ACAGTATGCATGGTCTGAGAAAG 58.488 43.478 24.49 7.18 42.53 2.62
2544 2618 2.677836 GCATATCGAGAACTTGTTGCCA 59.322 45.455 0.00 0.00 0.00 4.92
2774 2853 1.761667 CAGCTCCTCCTCCCCTCAG 60.762 68.421 0.00 0.00 0.00 3.35
2779 2863 1.306482 CCTCCTCCCCTCAGCTCAA 60.306 63.158 0.00 0.00 0.00 3.02
2862 2946 1.008881 TCGAATTCTCCGGATCGCG 60.009 57.895 18.18 11.90 35.39 5.87
2902 2986 2.366837 TGGCCCATCCACGATCCT 60.367 61.111 0.00 0.00 40.72 3.24
2903 2987 2.000701 TGGCCCATCCACGATCCTT 61.001 57.895 0.00 0.00 40.72 3.36
2907 2991 1.097547 CCCATCCACGATCCTTGCAC 61.098 60.000 0.00 0.00 0.00 4.57
2910 2994 0.107508 ATCCACGATCCTTGCACCTG 60.108 55.000 0.00 0.00 0.00 4.00
2911 2995 2.401766 CCACGATCCTTGCACCTGC 61.402 63.158 0.00 0.00 42.50 4.85
2982 3066 1.870055 GCACCACCAGCATCAACAGG 61.870 60.000 0.00 0.00 0.00 4.00
3015 3099 1.889170 GACAAGGAAAAGCTGGGGAAG 59.111 52.381 0.00 0.00 0.00 3.46
3016 3100 1.499007 ACAAGGAAAAGCTGGGGAAGA 59.501 47.619 0.00 0.00 0.00 2.87
3017 3101 2.091333 ACAAGGAAAAGCTGGGGAAGAA 60.091 45.455 0.00 0.00 0.00 2.52
3073 3162 0.811616 AAGCAAGGGATTAGCGCGAG 60.812 55.000 12.10 0.00 34.07 5.03
3141 3230 8.934507 ATTAACTGCACTCTGAGATAGTTAAC 57.065 34.615 27.13 0.00 40.94 2.01
3142 3231 6.597832 AACTGCACTCTGAGATAGTTAACT 57.402 37.500 13.68 13.68 0.00 2.24
3143 3232 6.202516 ACTGCACTCTGAGATAGTTAACTC 57.797 41.667 12.39 0.00 0.00 3.01
3144 3233 5.163703 ACTGCACTCTGAGATAGTTAACTCG 60.164 44.000 12.39 0.00 36.11 4.18
3145 3234 4.941873 TGCACTCTGAGATAGTTAACTCGA 59.058 41.667 12.39 0.00 36.11 4.04
3146 3235 5.590663 TGCACTCTGAGATAGTTAACTCGAT 59.409 40.000 12.39 0.27 36.11 3.59
3147 3236 6.766467 TGCACTCTGAGATAGTTAACTCGATA 59.234 38.462 12.39 0.00 36.11 2.92
3148 3237 7.041712 TGCACTCTGAGATAGTTAACTCGATAG 60.042 40.741 12.39 6.01 36.11 2.08
3149 3238 7.041644 GCACTCTGAGATAGTTAACTCGATAGT 60.042 40.741 12.39 5.37 37.65 2.12
3171 3260 7.414222 AGTTAATGCAATGAATGAACTGGAT 57.586 32.000 3.08 0.00 0.00 3.41
3179 3268 6.280643 CAATGAATGAACTGGATGCATCAAT 58.719 36.000 27.25 9.71 0.00 2.57
3236 3325 2.165167 ACAGCTCATGGACCAAACATG 58.835 47.619 0.00 0.00 45.39 3.21
3247 3336 8.638873 TCATGGACCAAACATGTACTATACTAG 58.361 37.037 0.00 0.00 44.57 2.57
3272 3361 3.255642 ACATAATGCTTGCCTCACGTTTT 59.744 39.130 0.00 0.00 0.00 2.43
3279 3378 6.935741 TGCTTGCCTCACGTTTTATATATT 57.064 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.474879 TGGTCGATTGCACTATGTCGA 59.525 47.619 0.00 0.00 40.38 4.20
9 10 2.616960 TGTGGTCGATTGCACTATGTC 58.383 47.619 0.00 0.00 0.00 3.06
35 36 1.684248 GGCAAGATGATGGCCTCAAGT 60.684 52.381 3.32 0.00 44.32 3.16
59 60 2.345991 CGGTGGTGGTCGGTTGAT 59.654 61.111 0.00 0.00 0.00 2.57
81 82 5.182570 CAGAAAGAAGATGATCCAAGCACAA 59.817 40.000 0.00 0.00 0.00 3.33
94 95 7.684529 AGACAAACATAGGTCAGAAAGAAGAT 58.315 34.615 0.00 0.00 36.50 2.40
98 99 6.269077 TGGTAGACAAACATAGGTCAGAAAGA 59.731 38.462 0.00 0.00 36.50 2.52
107 108 7.687941 AGTGAAATTGGTAGACAAACATAGG 57.312 36.000 0.00 0.00 43.46 2.57
154 155 2.159310 TGGCGCAAATGTATAAAGGCAC 60.159 45.455 10.83 0.00 0.00 5.01
230 231 1.466167 CGACAACTTCAAGGATGGCAG 59.534 52.381 0.00 0.00 0.00 4.85
409 451 0.891373 CCCTGGTATGCTCGATCGAT 59.109 55.000 19.78 6.61 0.00 3.59
410 452 1.806461 GCCCTGGTATGCTCGATCGA 61.806 60.000 18.32 18.32 0.00 3.59
554 597 1.278127 GGGATCGAGGGAACAACAAGA 59.722 52.381 0.00 0.00 0.00 3.02
558 601 0.613777 ACAGGGATCGAGGGAACAAC 59.386 55.000 0.00 0.00 0.00 3.32
576 619 1.783071 AAAGGAGGGGAGATCGAGAC 58.217 55.000 0.00 0.00 0.00 3.36
582 625 1.926426 CGGCCAAAAGGAGGGGAGAT 61.926 60.000 2.24 0.00 0.00 2.75
606 652 2.050442 GTGCGAAAAACAGGCCGG 60.050 61.111 0.00 0.00 0.00 6.13
700 746 4.431131 ACGGGCAAGCCATGGAGG 62.431 66.667 18.40 4.48 41.84 4.30
741 787 0.261991 ACCTCTCCGGCTCCTGATTA 59.738 55.000 0.00 0.00 35.61 1.75
742 788 1.002274 ACCTCTCCGGCTCCTGATT 59.998 57.895 0.00 0.00 35.61 2.57
743 789 1.760086 CACCTCTCCGGCTCCTGAT 60.760 63.158 0.00 0.00 35.61 2.90
753 799 2.015587 CTCCAGTACGTACACCTCTCC 58.984 57.143 26.55 0.00 0.00 3.71
761 807 1.866496 CGCGCACTCCAGTACGTAC 60.866 63.158 18.10 18.10 37.16 3.67
785 831 1.004560 ATACGATGCGATGCCAGGG 60.005 57.895 0.00 0.00 0.00 4.45
842 888 3.302699 GTCGACGGATTTAAACGAGAAGG 59.697 47.826 0.00 0.00 33.82 3.46
847 893 1.198867 TCGGTCGACGGATTTAAACGA 59.801 47.619 20.54 12.00 44.45 3.85
926 972 1.125270 CTACGCGGCAAAACCAAAAC 58.875 50.000 12.47 0.00 39.03 2.43
927 973 0.739561 ACTACGCGGCAAAACCAAAA 59.260 45.000 12.47 0.00 39.03 2.44
928 974 0.029567 CACTACGCGGCAAAACCAAA 59.970 50.000 12.47 0.00 39.03 3.28
929 975 1.649815 CACTACGCGGCAAAACCAA 59.350 52.632 12.47 0.00 39.03 3.67
930 976 2.255172 CCACTACGCGGCAAAACCA 61.255 57.895 12.47 0.00 39.03 3.67
931 977 2.559330 CCACTACGCGGCAAAACC 59.441 61.111 12.47 0.00 0.00 3.27
1081 1127 4.293694 CGCGAAGATCACGAGGAG 57.706 61.111 0.00 1.54 0.00 3.69
1166 1212 2.109126 GTGCTGGGGAAGACGATGC 61.109 63.158 0.00 0.00 0.00 3.91
1533 1579 4.111016 TCGTGGAGTGTAGCGCGG 62.111 66.667 8.83 0.00 0.00 6.46
1536 1582 0.732880 CCTTGTCGTGGAGTGTAGCG 60.733 60.000 0.00 0.00 0.00 4.26
1544 1590 2.280797 GCTGTGCCTTGTCGTGGA 60.281 61.111 0.00 0.00 0.00 4.02
1545 1591 2.591429 TGCTGTGCCTTGTCGTGG 60.591 61.111 0.00 0.00 0.00 4.94
1595 1641 2.512286 CCGCACGTGAGGATGCAT 60.512 61.111 31.92 0.00 42.17 3.96
1598 1644 4.758251 TGGCCGCACGTGAGGATG 62.758 66.667 38.08 15.37 37.14 3.51
1639 1685 4.357947 TCCGTCTCCTGCACGCAC 62.358 66.667 0.00 0.00 35.87 5.34
1640 1686 4.056125 CTCCGTCTCCTGCACGCA 62.056 66.667 0.00 0.00 35.87 5.24
1641 1687 4.057428 ACTCCGTCTCCTGCACGC 62.057 66.667 0.00 0.00 35.87 5.34
1656 1702 0.891373 CAGCGATATCGATCCCCACT 59.109 55.000 28.63 11.01 43.02 4.00
1747 1793 2.169789 CAACGGGATGCAGCTCTCG 61.170 63.158 8.03 8.03 44.74 4.04
1804 1850 3.314388 CTCCACGAAGCTTTGCCGC 62.314 63.158 13.93 0.00 0.00 6.53
1810 1856 1.926108 AGTAGACCTCCACGAAGCTT 58.074 50.000 0.00 0.00 0.00 3.74
1830 1876 1.301244 CACTGCTTCGTCTGCTGGT 60.301 57.895 0.00 0.00 34.40 4.00
1912 1958 2.386660 GCTGAGCTCGAACCACTGC 61.387 63.158 9.64 0.00 0.00 4.40
1951 1997 2.092882 GTACTTGGTGTCGGCGAGC 61.093 63.158 11.20 6.31 0.00 5.03
2000 2046 3.437795 CTCGTCCGGGTAGCACGT 61.438 66.667 11.79 0.00 35.05 4.49
2035 2081 2.562912 CCGTGCAGCATGTTCACC 59.437 61.111 13.73 0.00 39.31 4.02
2086 2132 4.785453 CCGCCCTTGCTCCAGTCC 62.785 72.222 0.00 0.00 34.43 3.85
2181 2227 0.880718 GTAATAGCAGGGCCTGTCGC 60.881 60.000 32.80 20.14 33.43 5.19
2336 2383 2.742053 ACAAACATGGAAGAATCGGTCG 59.258 45.455 0.00 0.00 0.00 4.79
2401 2450 5.003804 AGAGAAGGCATTTTATGTTCACGT 58.996 37.500 0.00 0.00 0.00 4.49
2415 2464 0.606401 CGGCAAAGGAAGAGAAGGCA 60.606 55.000 0.00 0.00 0.00 4.75
2427 2476 1.526575 AAGATGTGGTGCCGGCAAAG 61.527 55.000 34.66 0.00 0.00 2.77
2736 2810 1.895131 GGAATTGATGGTTGGTGCAGT 59.105 47.619 0.00 0.00 0.00 4.40
2774 2853 9.798994 AAATTGAATGAAATGATCTAGTTGAGC 57.201 29.630 0.00 0.00 0.00 4.26
2779 2863 7.641411 CGCGAAAATTGAATGAAATGATCTAGT 59.359 33.333 0.00 0.00 0.00 2.57
2910 2994 3.003068 CCAGTTAATCATACTGCTGCTGC 59.997 47.826 8.89 8.89 41.28 5.25
2911 2995 4.034858 CACCAGTTAATCATACTGCTGCTG 59.965 45.833 4.89 4.89 41.28 4.41
2912 2996 4.080919 TCACCAGTTAATCATACTGCTGCT 60.081 41.667 0.00 0.00 41.28 4.24
3034 3118 1.748493 TGGCCGAGGAATTTACATTGC 59.252 47.619 0.00 0.00 0.00 3.56
3035 3119 3.734902 GCTTGGCCGAGGAATTTACATTG 60.735 47.826 22.06 0.00 0.00 2.82
3036 3120 2.427095 GCTTGGCCGAGGAATTTACATT 59.573 45.455 22.06 0.00 0.00 2.71
3037 3121 2.024414 GCTTGGCCGAGGAATTTACAT 58.976 47.619 22.06 0.00 0.00 2.29
3038 3122 1.271652 TGCTTGGCCGAGGAATTTACA 60.272 47.619 22.06 6.13 0.00 2.41
3141 3230 8.554528 AGTTCATTCATTGCATTAACTATCGAG 58.445 33.333 0.00 0.00 0.00 4.04
3142 3231 8.337532 CAGTTCATTCATTGCATTAACTATCGA 58.662 33.333 0.00 0.00 0.00 3.59
3143 3232 7.588854 CCAGTTCATTCATTGCATTAACTATCG 59.411 37.037 0.00 0.00 0.00 2.92
3144 3233 8.623903 TCCAGTTCATTCATTGCATTAACTATC 58.376 33.333 0.00 0.00 0.00 2.08
3145 3234 8.523915 TCCAGTTCATTCATTGCATTAACTAT 57.476 30.769 0.00 0.00 0.00 2.12
3146 3235 7.936496 TCCAGTTCATTCATTGCATTAACTA 57.064 32.000 0.00 0.00 0.00 2.24
3147 3236 6.839124 TCCAGTTCATTCATTGCATTAACT 57.161 33.333 0.00 0.00 0.00 2.24
3148 3237 6.019318 GCATCCAGTTCATTCATTGCATTAAC 60.019 38.462 0.00 0.00 0.00 2.01
3149 3238 6.044046 GCATCCAGTTCATTCATTGCATTAA 58.956 36.000 0.00 0.00 0.00 1.40
3150 3239 5.127356 TGCATCCAGTTCATTCATTGCATTA 59.873 36.000 0.00 0.00 34.24 1.90
3151 3240 4.081365 TGCATCCAGTTCATTCATTGCATT 60.081 37.500 0.00 0.00 34.24 3.56
3152 3241 3.449377 TGCATCCAGTTCATTCATTGCAT 59.551 39.130 0.00 0.00 34.24 3.96
3155 3244 5.257082 TGATGCATCCAGTTCATTCATTG 57.743 39.130 23.67 0.00 0.00 2.82
3171 3260 3.831333 TGTTTTCTTGGCCTATTGATGCA 59.169 39.130 3.32 0.00 0.00 3.96
3179 3268 1.202830 TCGCCTTGTTTTCTTGGCCTA 60.203 47.619 3.32 0.00 42.15 3.93
3211 3300 2.696989 TGGTCCATGAGCTGTATGTG 57.303 50.000 0.00 0.00 0.00 3.21
3236 3325 7.063544 GCAAGCATTATGTGGCTAGTATAGTAC 59.936 40.741 0.00 0.00 41.93 2.73
3247 3336 1.105457 TGAGGCAAGCATTATGTGGC 58.895 50.000 1.97 1.97 38.06 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.