Multiple sequence alignment - TraesCS3A01G384400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G384400 chr3A 100.000 3125 0 0 1 3125 633920970 633924094 0.000000e+00 5771.0
1 TraesCS3A01G384400 chr3A 83.249 788 96 16 1500 2283 634103251 634104006 0.000000e+00 691.0
2 TraesCS3A01G384400 chr3D 89.555 1867 86 45 486 2293 492130776 492132592 0.000000e+00 2266.0
3 TraesCS3A01G384400 chr3D 83.533 668 94 11 2410 3070 492612654 492613312 7.410000e-171 610.0
4 TraesCS3A01G384400 chr3D 88.867 503 39 11 2569 3066 492133305 492133795 1.240000e-168 603.0
5 TraesCS3A01G384400 chr3D 81.853 518 67 11 1769 2283 492654706 492655199 8.070000e-111 411.0
6 TraesCS3A01G384400 chr3D 82.379 454 68 9 2620 3070 492660507 492660951 4.890000e-103 385.0
7 TraesCS3A01G384400 chr3D 91.908 173 6 5 2385 2554 492132604 492132771 5.210000e-58 235.0
8 TraesCS3A01G384400 chr3D 90.260 154 15 0 2470 2623 492655408 492655561 5.280000e-48 202.0
9 TraesCS3A01G384400 chr3B 87.941 1816 103 62 499 2279 653151466 653153200 0.000000e+00 2034.0
10 TraesCS3A01G384400 chr3B 83.033 666 96 12 2410 3069 653617881 653618535 3.470000e-164 588.0
11 TraesCS3A01G384400 chr3B 82.890 526 59 12 1762 2283 653617388 653617886 7.950000e-121 444.0
12 TraesCS3A01G384400 chr3B 88.372 172 17 1 2410 2578 653153202 653153373 1.470000e-48 204.0
13 TraesCS3A01G384400 chr3B 83.871 217 26 7 5 217 653150932 653151143 6.840000e-47 198.0
14 TraesCS3A01G384400 chr1A 94.161 274 16 0 1127 1400 463461702 463461429 4.820000e-113 418.0
15 TraesCS3A01G384400 chr1A 92.086 139 11 0 1499 1637 463461343 463461205 2.460000e-46 196.0
16 TraesCS3A01G384400 chr1D 93.407 273 16 2 1128 1399 364625276 364625005 1.350000e-108 403.0
17 TraesCS3A01G384400 chr1D 89.706 136 13 1 1501 1636 364624923 364624789 4.140000e-39 172.0
18 TraesCS3A01G384400 chr1D 82.667 75 8 5 1761 1834 364624678 364624608 9.360000e-06 62.1
19 TraesCS3A01G384400 chr1D 84.615 65 4 2 395 459 6386303 6386361 3.370000e-05 60.2
20 TraesCS3A01G384400 chr5D 93.609 266 17 0 1132 1397 425077485 425077220 6.280000e-107 398.0
21 TraesCS3A01G384400 chr5D 84.940 166 17 6 230 388 462454799 462454635 8.970000e-36 161.0
22 TraesCS3A01G384400 chr5B 93.233 266 18 0 1132 1397 514279627 514279362 2.920000e-105 392.0
23 TraesCS3A01G384400 chr5A 92.857 266 19 0 1132 1397 539093485 539093220 1.360000e-103 387.0
24 TraesCS3A01G384400 chr5A 96.154 130 5 0 2282 2411 385546019 385545890 2.440000e-51 213.0
25 TraesCS3A01G384400 chr5A 91.837 147 9 3 2280 2425 439864646 439864790 5.280000e-48 202.0
26 TraesCS3A01G384400 chr5A 81.548 168 23 6 227 388 491750368 491750203 7.030000e-27 132.0
27 TraesCS3A01G384400 chr5A 83.217 143 20 4 224 364 362159276 362159416 9.100000e-26 128.0
28 TraesCS3A01G384400 chr1B 91.971 274 22 0 1126 1399 487951488 487951215 4.890000e-103 385.0
29 TraesCS3A01G384400 chr1B 94.776 134 7 0 2279 2412 551008832 551008965 3.160000e-50 209.0
30 TraesCS3A01G384400 chr1B 92.969 128 9 0 1499 1626 487951133 487951006 1.480000e-43 187.0
31 TraesCS3A01G384400 chr1B 83.230 161 20 4 232 386 577610466 577610307 1.170000e-29 141.0
32 TraesCS3A01G384400 chr1B 84.028 144 21 2 220 362 642605717 642605859 1.510000e-28 137.0
33 TraesCS3A01G384400 chr1B 83.688 141 18 4 230 368 553893188 553893051 9.100000e-26 128.0
34 TraesCS3A01G384400 chr7D 90.037 271 24 3 1128 1396 262698961 262698692 6.410000e-92 348.0
35 TraesCS3A01G384400 chr7D 84.106 151 18 6 219 368 575898982 575899127 1.170000e-29 141.0
36 TraesCS3A01G384400 chr4A 96.154 130 5 0 2285 2414 16485597 16485468 2.440000e-51 213.0
37 TraesCS3A01G384400 chr4A 94.815 135 5 2 2278 2411 660520454 660520587 3.160000e-50 209.0
38 TraesCS3A01G384400 chr4A 90.244 123 12 0 1504 1626 517884847 517884969 8.970000e-36 161.0
39 TraesCS3A01G384400 chr4B 94.776 134 6 1 2278 2411 653214286 653214418 1.140000e-49 207.0
40 TraesCS3A01G384400 chr4B 90.244 123 12 0 1504 1626 100576909 100577031 8.970000e-36 161.0
41 TraesCS3A01G384400 chr4B 84.146 164 17 4 230 388 27243648 27243807 1.940000e-32 150.0
42 TraesCS3A01G384400 chr4B 82.857 70 7 2 390 459 564902337 564902401 1.210000e-04 58.4
43 TraesCS3A01G384400 chr2B 93.525 139 9 0 2277 2415 800545044 800544906 1.140000e-49 207.0
44 TraesCS3A01G384400 chr2B 93.571 140 6 2 2278 2414 11087235 11087096 4.090000e-49 206.0
45 TraesCS3A01G384400 chr2B 84.722 72 5 1 391 456 799358662 799358733 2.010000e-07 67.6
46 TraesCS3A01G384400 chr2B 84.000 75 5 2 388 455 799358740 799358666 7.230000e-07 65.8
47 TraesCS3A01G384400 chr6B 91.275 149 10 3 2266 2413 660245378 660245232 1.900000e-47 200.0
48 TraesCS3A01G384400 chr6B 86.957 69 4 1 395 458 38206385 38206453 4.320000e-09 73.1
49 TraesCS3A01G384400 chr6B 86.364 66 7 2 388 452 708178824 708178888 1.550000e-08 71.3
50 TraesCS3A01G384400 chr6B 86.567 67 4 1 394 455 38206451 38206385 5.590000e-08 69.4
51 TraesCS3A01G384400 chr6B 94.872 39 0 2 386 423 20393439 20393402 3.370000e-05 60.2
52 TraesCS3A01G384400 chr4D 89.431 123 13 0 1504 1626 68053667 68053789 4.170000e-34 156.0
53 TraesCS3A01G384400 chr4D 84.615 65 5 1 395 459 33279477 33279536 3.370000e-05 60.2
54 TraesCS3A01G384400 chr4D 83.582 67 6 1 395 461 33279532 33279471 1.210000e-04 58.4
55 TraesCS3A01G384400 chr7A 80.864 162 22 5 230 385 130093179 130093337 5.470000e-23 119.0
56 TraesCS3A01G384400 chr6D 85.075 67 2 4 390 455 319425118 319425059 9.360000e-06 62.1
57 TraesCS3A01G384400 chr2A 94.872 39 0 2 385 422 46358100 46358063 3.370000e-05 60.2
58 TraesCS3A01G384400 chr7B 89.362 47 4 1 377 423 687816969 687817014 1.210000e-04 58.4
59 TraesCS3A01G384400 chr7B 89.362 47 4 1 377 423 687852661 687852706 1.210000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G384400 chr3A 633920970 633924094 3124 False 5771.000000 5771 100.000000 1 3125 1 chr3A.!!$F1 3124
1 TraesCS3A01G384400 chr3A 634103251 634104006 755 False 691.000000 691 83.249000 1500 2283 1 chr3A.!!$F2 783
2 TraesCS3A01G384400 chr3D 492130776 492133795 3019 False 1034.666667 2266 90.110000 486 3066 3 chr3D.!!$F3 2580
3 TraesCS3A01G384400 chr3D 492612654 492613312 658 False 610.000000 610 83.533000 2410 3070 1 chr3D.!!$F1 660
4 TraesCS3A01G384400 chr3D 492654706 492655561 855 False 306.500000 411 86.056500 1769 2623 2 chr3D.!!$F4 854
5 TraesCS3A01G384400 chr3B 653150932 653153373 2441 False 812.000000 2034 86.728000 5 2578 3 chr3B.!!$F1 2573
6 TraesCS3A01G384400 chr3B 653617388 653618535 1147 False 516.000000 588 82.961500 1762 3069 2 chr3B.!!$F2 1307
7 TraesCS3A01G384400 chr1D 364624608 364625276 668 True 212.366667 403 88.593333 1128 1834 3 chr1D.!!$R1 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 719 0.036022 GAGCAGCACTCACTCCCTTT 59.964 55.0 0.0 0.0 45.49 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 2539 0.179936 AGTACTACTCCCTCCGTCCG 59.82 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.280206 ACGGTTGAGCTAACGAACGC 61.280 55.000 0.00 0.00 40.28 4.84
59 60 2.494728 CGAACGCACGAACGCTTG 60.495 61.111 0.00 0.00 36.19 4.01
66 67 2.669569 ACGAACGCTTGCCATGCT 60.670 55.556 0.86 0.00 0.00 3.79
67 68 1.375396 ACGAACGCTTGCCATGCTA 60.375 52.632 0.86 0.00 0.00 3.49
68 69 1.349627 CGAACGCTTGCCATGCTAG 59.650 57.895 0.86 0.00 34.76 3.42
70 71 0.744414 GAACGCTTGCCATGCTAGGA 60.744 55.000 0.86 0.00 32.48 2.94
71 72 0.745845 AACGCTTGCCATGCTAGGAG 60.746 55.000 0.86 0.00 32.48 3.69
72 73 1.153289 CGCTTGCCATGCTAGGAGT 60.153 57.895 0.86 0.00 32.48 3.85
73 74 1.434622 CGCTTGCCATGCTAGGAGTG 61.435 60.000 0.86 0.00 32.48 3.51
76 77 0.991146 TTGCCATGCTAGGAGTGGAA 59.009 50.000 14.09 3.79 34.94 3.53
77 78 0.991146 TGCCATGCTAGGAGTGGAAA 59.009 50.000 14.09 2.34 34.94 3.13
78 79 1.065199 TGCCATGCTAGGAGTGGAAAG 60.065 52.381 14.09 0.00 34.94 2.62
88 91 2.373502 AGGAGTGGAAAGAAGAAGGGTG 59.626 50.000 0.00 0.00 0.00 4.61
96 99 4.567747 GGAAAGAAGAAGGGTGCTCCAATA 60.568 45.833 7.20 0.00 38.24 1.90
99 102 0.541863 AGAAGGGTGCTCCAATACCG 59.458 55.000 7.20 0.00 37.85 4.02
108 111 2.290008 TGCTCCAATACCGACACATGTT 60.290 45.455 0.00 0.00 0.00 2.71
110 113 3.555956 GCTCCAATACCGACACATGTTAG 59.444 47.826 0.00 0.00 0.00 2.34
111 114 4.755411 CTCCAATACCGACACATGTTAGT 58.245 43.478 0.00 0.00 0.00 2.24
112 115 5.680408 GCTCCAATACCGACACATGTTAGTA 60.680 44.000 0.00 0.00 0.00 1.82
113 116 5.653507 TCCAATACCGACACATGTTAGTAC 58.346 41.667 0.00 0.00 0.00 2.73
114 117 5.185442 TCCAATACCGACACATGTTAGTACA 59.815 40.000 0.00 0.00 38.95 2.90
136 139 4.681835 TGACTCGCTACAAGTCTTCTAC 57.318 45.455 5.03 0.00 42.93 2.59
139 142 5.581479 TGACTCGCTACAAGTCTTCTACTAG 59.419 44.000 5.03 0.00 42.93 2.57
144 147 9.258826 CTCGCTACAAGTCTTCTACTAGTATAA 57.741 37.037 2.33 1.71 37.50 0.98
145 148 9.039870 TCGCTACAAGTCTTCTACTAGTATAAC 57.960 37.037 2.33 0.17 37.50 1.89
187 190 7.354257 ACAATCTTTTTGTGCAATATTTGTGC 58.646 30.769 0.00 0.00 42.55 4.57
197 200 3.699038 GCAATATTTGTGCAAGGGACCTA 59.301 43.478 0.00 0.00 41.80 3.08
201 204 0.698238 TTGTGCAAGGGACCTATGCT 59.302 50.000 18.57 0.00 40.66 3.79
202 205 0.698238 TGTGCAAGGGACCTATGCTT 59.302 50.000 18.57 0.12 40.66 3.91
203 206 1.098050 GTGCAAGGGACCTATGCTTG 58.902 55.000 18.57 11.99 40.66 4.01
204 207 0.991146 TGCAAGGGACCTATGCTTGA 59.009 50.000 18.57 1.49 40.66 3.02
207 210 2.164422 GCAAGGGACCTATGCTTGAAAC 59.836 50.000 11.21 0.00 37.12 2.78
208 211 3.420893 CAAGGGACCTATGCTTGAAACA 58.579 45.455 2.89 0.00 0.00 2.83
210 213 3.690460 AGGGACCTATGCTTGAAACAAG 58.310 45.455 7.07 7.07 0.00 3.16
211 214 3.074538 AGGGACCTATGCTTGAAACAAGT 59.925 43.478 12.07 0.00 0.00 3.16
212 215 3.440522 GGGACCTATGCTTGAAACAAGTC 59.559 47.826 12.07 6.28 0.00 3.01
213 216 4.327680 GGACCTATGCTTGAAACAAGTCT 58.672 43.478 12.07 4.09 0.00 3.24
215 218 5.335191 GGACCTATGCTTGAAACAAGTCTTG 60.335 44.000 11.17 11.17 0.00 3.02
217 220 2.869233 TGCTTGAAACAAGTCTTGGC 57.131 45.000 16.85 9.46 34.12 4.52
218 221 2.378038 TGCTTGAAACAAGTCTTGGCT 58.622 42.857 16.85 3.10 34.12 4.75
219 222 2.760092 TGCTTGAAACAAGTCTTGGCTT 59.240 40.909 16.85 9.34 34.12 4.35
220 223 3.951037 TGCTTGAAACAAGTCTTGGCTTA 59.049 39.130 16.85 0.00 34.12 3.09
221 224 4.202010 TGCTTGAAACAAGTCTTGGCTTAC 60.202 41.667 16.85 4.52 34.12 2.34
222 225 4.036852 GCTTGAAACAAGTCTTGGCTTACT 59.963 41.667 16.85 0.00 34.12 2.24
223 226 5.450550 GCTTGAAACAAGTCTTGGCTTACTT 60.451 40.000 16.85 0.00 36.38 2.24
224 227 6.238648 GCTTGAAACAAGTCTTGGCTTACTTA 60.239 38.462 16.85 0.00 34.23 2.24
225 228 7.633193 TTGAAACAAGTCTTGGCTTACTTAA 57.367 32.000 16.85 0.00 34.23 1.85
226 229 7.817418 TGAAACAAGTCTTGGCTTACTTAAT 57.183 32.000 16.85 0.00 34.23 1.40
227 230 7.648142 TGAAACAAGTCTTGGCTTACTTAATG 58.352 34.615 16.85 0.00 34.23 1.90
228 231 7.500892 TGAAACAAGTCTTGGCTTACTTAATGA 59.499 33.333 16.85 0.00 34.23 2.57
229 232 7.440523 AACAAGTCTTGGCTTACTTAATGAG 57.559 36.000 16.85 0.00 34.23 2.90
230 233 6.534634 ACAAGTCTTGGCTTACTTAATGAGT 58.465 36.000 16.85 0.00 37.40 3.41
231 234 6.428159 ACAAGTCTTGGCTTACTTAATGAGTG 59.572 38.462 16.85 0.00 35.90 3.51
232 235 6.115448 AGTCTTGGCTTACTTAATGAGTGT 57.885 37.500 0.00 0.00 39.48 3.55
233 236 5.934625 AGTCTTGGCTTACTTAATGAGTGTG 59.065 40.000 0.00 0.00 39.48 3.82
234 237 5.122396 GTCTTGGCTTACTTAATGAGTGTGG 59.878 44.000 0.00 0.00 39.48 4.17
235 238 3.343617 TGGCTTACTTAATGAGTGTGGC 58.656 45.455 0.00 0.00 39.48 5.01
236 239 3.009033 TGGCTTACTTAATGAGTGTGGCT 59.991 43.478 7.12 0.00 39.48 4.75
237 240 4.224147 TGGCTTACTTAATGAGTGTGGCTA 59.776 41.667 7.12 0.00 39.48 3.93
238 241 4.811557 GGCTTACTTAATGAGTGTGGCTAG 59.188 45.833 0.00 0.00 39.48 3.42
239 242 4.811557 GCTTACTTAATGAGTGTGGCTAGG 59.188 45.833 0.00 0.00 39.48 3.02
240 243 5.627040 GCTTACTTAATGAGTGTGGCTAGGT 60.627 44.000 0.00 0.00 39.48 3.08
241 244 4.473477 ACTTAATGAGTGTGGCTAGGTC 57.527 45.455 0.00 0.00 37.17 3.85
242 245 4.097418 ACTTAATGAGTGTGGCTAGGTCT 58.903 43.478 0.00 0.00 37.17 3.85
243 246 4.160626 ACTTAATGAGTGTGGCTAGGTCTC 59.839 45.833 0.00 0.00 37.17 3.36
244 247 2.238084 ATGAGTGTGGCTAGGTCTCA 57.762 50.000 0.00 0.00 39.05 3.27
245 248 1.550327 TGAGTGTGGCTAGGTCTCAG 58.450 55.000 0.00 0.00 32.49 3.35
246 249 1.203063 TGAGTGTGGCTAGGTCTCAGT 60.203 52.381 0.00 0.00 32.49 3.41
247 250 1.474879 GAGTGTGGCTAGGTCTCAGTC 59.525 57.143 0.00 0.00 0.00 3.51
248 251 0.171455 GTGTGGCTAGGTCTCAGTCG 59.829 60.000 0.00 0.00 0.00 4.18
249 252 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
250 253 0.452585 GTGGCTAGGTCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
251 254 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
252 255 0.736053 GGCTAGGTCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
265 268 5.769967 CAGTCGACTGAGATTTAACCAAG 57.230 43.478 36.73 7.53 46.59 3.61
266 269 5.230942 CAGTCGACTGAGATTTAACCAAGT 58.769 41.667 36.73 0.00 46.59 3.16
267 270 5.346281 CAGTCGACTGAGATTTAACCAAGTC 59.654 44.000 36.73 0.00 46.59 3.01
268 271 5.244178 AGTCGACTGAGATTTAACCAAGTCT 59.756 40.000 19.30 0.00 33.74 3.24
269 272 5.927115 GTCGACTGAGATTTAACCAAGTCTT 59.073 40.000 8.70 0.00 31.40 3.01
270 273 7.039923 AGTCGACTGAGATTTAACCAAGTCTTA 60.040 37.037 19.30 0.00 31.40 2.10
271 274 7.273815 GTCGACTGAGATTTAACCAAGTCTTAG 59.726 40.741 8.70 1.73 38.97 2.18
272 275 7.039923 TCGACTGAGATTTAACCAAGTCTTAGT 60.040 37.037 6.92 6.92 44.67 2.24
273 276 8.468720 GACTGAGATTTAACCAAGTCTTAGTC 57.531 38.462 14.53 14.53 46.75 2.59
274 277 7.963532 ACTGAGATTTAACCAAGTCTTAGTCA 58.036 34.615 2.74 0.00 40.87 3.41
275 278 8.429641 ACTGAGATTTAACCAAGTCTTAGTCAA 58.570 33.333 2.74 0.00 40.87 3.18
276 279 8.833231 TGAGATTTAACCAAGTCTTAGTCAAG 57.167 34.615 0.00 0.00 31.40 3.02
277 280 8.429641 TGAGATTTAACCAAGTCTTAGTCAAGT 58.570 33.333 0.00 0.00 31.40 3.16
278 281 9.924650 GAGATTTAACCAAGTCTTAGTCAAGTA 57.075 33.333 0.00 0.00 31.40 2.24
282 285 9.841295 TTTAACCAAGTCTTAGTCAAGTAATGT 57.159 29.630 0.00 0.00 33.20 2.71
285 288 8.828688 ACCAAGTCTTAGTCAAGTAATGTAAC 57.171 34.615 0.00 0.00 33.20 2.50
286 289 8.426489 ACCAAGTCTTAGTCAAGTAATGTAACA 58.574 33.333 0.00 0.00 33.20 2.41
287 290 9.436957 CCAAGTCTTAGTCAAGTAATGTAACAT 57.563 33.333 0.00 0.00 33.20 2.71
289 292 8.480643 AGTCTTAGTCAAGTAATGTAACATGC 57.519 34.615 0.00 0.00 33.20 4.06
290 293 8.094548 AGTCTTAGTCAAGTAATGTAACATGCA 58.905 33.333 0.00 0.00 33.20 3.96
291 294 8.717821 GTCTTAGTCAAGTAATGTAACATGCAA 58.282 33.333 0.00 0.00 33.20 4.08
292 295 9.278978 TCTTAGTCAAGTAATGTAACATGCAAA 57.721 29.630 0.00 0.00 33.20 3.68
293 296 9.546909 CTTAGTCAAGTAATGTAACATGCAAAG 57.453 33.333 0.00 0.00 0.00 2.77
294 297 7.744087 AGTCAAGTAATGTAACATGCAAAGA 57.256 32.000 0.00 0.00 0.00 2.52
295 298 7.810658 AGTCAAGTAATGTAACATGCAAAGAG 58.189 34.615 0.00 0.00 0.00 2.85
296 299 7.661437 AGTCAAGTAATGTAACATGCAAAGAGA 59.339 33.333 0.00 0.00 0.00 3.10
297 300 7.959651 GTCAAGTAATGTAACATGCAAAGAGAG 59.040 37.037 0.00 0.00 0.00 3.20
298 301 7.877612 TCAAGTAATGTAACATGCAAAGAGAGA 59.122 33.333 0.00 0.00 0.00 3.10
299 302 8.506437 CAAGTAATGTAACATGCAAAGAGAGAA 58.494 33.333 0.00 0.00 0.00 2.87
300 303 8.034058 AGTAATGTAACATGCAAAGAGAGAAC 57.966 34.615 0.00 0.00 0.00 3.01
301 304 6.882610 AATGTAACATGCAAAGAGAGAACA 57.117 33.333 0.00 0.00 0.00 3.18
302 305 6.882610 ATGTAACATGCAAAGAGAGAACAA 57.117 33.333 0.00 0.00 0.00 2.83
303 306 6.304356 TGTAACATGCAAAGAGAGAACAAG 57.696 37.500 0.00 0.00 0.00 3.16
304 307 6.054941 TGTAACATGCAAAGAGAGAACAAGA 58.945 36.000 0.00 0.00 0.00 3.02
305 308 6.542005 TGTAACATGCAAAGAGAGAACAAGAA 59.458 34.615 0.00 0.00 0.00 2.52
306 309 6.455360 AACATGCAAAGAGAGAACAAGAAA 57.545 33.333 0.00 0.00 0.00 2.52
307 310 6.455360 ACATGCAAAGAGAGAACAAGAAAA 57.545 33.333 0.00 0.00 0.00 2.29
308 311 6.866480 ACATGCAAAGAGAGAACAAGAAAAA 58.134 32.000 0.00 0.00 0.00 1.94
328 331 6.546972 AAAAACCGAAAAGAAAAGTTTGCA 57.453 29.167 0.00 0.00 31.39 4.08
329 332 5.524511 AAACCGAAAAGAAAAGTTTGCAC 57.475 34.783 0.00 0.00 29.89 4.57
330 333 3.175929 ACCGAAAAGAAAAGTTTGCACG 58.824 40.909 0.00 0.00 0.00 5.34
331 334 2.533942 CCGAAAAGAAAAGTTTGCACGG 59.466 45.455 0.00 2.30 0.00 4.94
332 335 3.430931 CGAAAAGAAAAGTTTGCACGGA 58.569 40.909 0.00 0.00 0.00 4.69
333 336 4.041723 CGAAAAGAAAAGTTTGCACGGAT 58.958 39.130 0.00 0.00 0.00 4.18
334 337 4.146443 CGAAAAGAAAAGTTTGCACGGATC 59.854 41.667 0.00 0.00 0.00 3.36
335 338 3.643159 AAGAAAAGTTTGCACGGATCC 57.357 42.857 0.00 0.00 0.00 3.36
336 339 1.886542 AGAAAAGTTTGCACGGATCCC 59.113 47.619 6.06 0.00 0.00 3.85
337 340 1.611491 GAAAAGTTTGCACGGATCCCA 59.389 47.619 6.06 0.00 0.00 4.37
338 341 1.923356 AAAGTTTGCACGGATCCCAT 58.077 45.000 6.06 0.00 0.00 4.00
339 342 1.923356 AAGTTTGCACGGATCCCATT 58.077 45.000 6.06 0.00 0.00 3.16
340 343 1.176527 AGTTTGCACGGATCCCATTG 58.823 50.000 6.06 2.07 0.00 2.82
341 344 0.887933 GTTTGCACGGATCCCATTGT 59.112 50.000 6.06 0.00 0.00 2.71
342 345 2.088423 GTTTGCACGGATCCCATTGTA 58.912 47.619 6.06 0.00 0.00 2.41
343 346 1.745232 TTGCACGGATCCCATTGTAC 58.255 50.000 6.06 0.00 0.00 2.90
344 347 0.615850 TGCACGGATCCCATTGTACA 59.384 50.000 6.06 0.00 0.00 2.90
345 348 1.211703 TGCACGGATCCCATTGTACAT 59.788 47.619 6.06 0.00 0.00 2.29
346 349 1.873591 GCACGGATCCCATTGTACATC 59.126 52.381 6.06 0.00 0.00 3.06
347 350 2.485479 GCACGGATCCCATTGTACATCT 60.485 50.000 6.06 0.00 0.00 2.90
348 351 3.133691 CACGGATCCCATTGTACATCTG 58.866 50.000 6.06 0.00 0.00 2.90
349 352 3.038280 ACGGATCCCATTGTACATCTGA 58.962 45.455 6.06 0.00 0.00 3.27
350 353 3.648067 ACGGATCCCATTGTACATCTGAT 59.352 43.478 6.06 3.30 0.00 2.90
351 354 4.838423 ACGGATCCCATTGTACATCTGATA 59.162 41.667 6.06 0.00 0.00 2.15
352 355 5.047021 ACGGATCCCATTGTACATCTGATAG 60.047 44.000 6.06 4.24 0.00 2.08
353 356 5.185828 CGGATCCCATTGTACATCTGATAGA 59.814 44.000 6.06 0.00 0.00 1.98
354 357 6.127225 CGGATCCCATTGTACATCTGATAGAT 60.127 42.308 6.06 1.91 34.74 1.98
355 358 7.068716 CGGATCCCATTGTACATCTGATAGATA 59.931 40.741 6.06 0.00 32.12 1.98
356 359 8.932610 GGATCCCATTGTACATCTGATAGATAT 58.067 37.037 0.00 0.00 32.12 1.63
368 371 9.639563 ACATCTGATAGATATATCATCGGACTT 57.360 33.333 24.08 16.84 36.06 3.01
372 375 9.871299 CTGATAGATATATCATCGGACTTAACG 57.129 37.037 15.08 0.00 36.06 3.18
373 376 9.609346 TGATAGATATATCATCGGACTTAACGA 57.391 33.333 15.08 0.00 45.19 3.85
377 380 8.237949 AGATATATCATCGGACTTAACGAAGTG 58.762 37.037 15.08 0.00 46.23 3.16
378 381 3.928727 TCATCGGACTTAACGAAGTGT 57.071 42.857 0.00 0.00 46.23 3.55
379 382 3.829948 TCATCGGACTTAACGAAGTGTC 58.170 45.455 0.00 0.00 46.23 3.67
380 383 3.253921 TCATCGGACTTAACGAAGTGTCA 59.746 43.478 0.00 0.00 46.23 3.58
381 384 3.278367 TCGGACTTAACGAAGTGTCAG 57.722 47.619 0.00 0.00 46.23 3.51
382 385 2.620115 TCGGACTTAACGAAGTGTCAGT 59.380 45.455 0.00 0.00 46.23 3.41
383 386 2.978489 CGGACTTAACGAAGTGTCAGTC 59.022 50.000 0.00 0.00 46.23 3.51
384 387 2.978489 GGACTTAACGAAGTGTCAGTCG 59.022 50.000 4.66 4.66 46.23 4.18
385 388 3.304257 GGACTTAACGAAGTGTCAGTCGA 60.304 47.826 11.76 0.00 46.23 4.20
386 389 3.625938 ACTTAACGAAGTGTCAGTCGAC 58.374 45.455 7.70 7.70 45.00 4.20
387 390 3.314635 ACTTAACGAAGTGTCAGTCGACT 59.685 43.478 13.58 13.58 45.00 4.18
388 391 4.512944 ACTTAACGAAGTGTCAGTCGACTA 59.487 41.667 19.57 0.00 45.00 2.59
389 392 5.180868 ACTTAACGAAGTGTCAGTCGACTAT 59.819 40.000 19.57 0.00 45.00 2.12
390 393 4.500603 AACGAAGTGTCAGTCGACTATT 57.499 40.909 19.57 8.20 45.00 1.73
391 394 5.618056 AACGAAGTGTCAGTCGACTATTA 57.382 39.130 19.57 3.90 45.00 0.98
392 395 4.967437 ACGAAGTGTCAGTCGACTATTAC 58.033 43.478 19.57 16.53 42.51 1.89
393 396 4.694509 ACGAAGTGTCAGTCGACTATTACT 59.305 41.667 19.57 18.06 42.51 2.24
394 397 5.180868 ACGAAGTGTCAGTCGACTATTACTT 59.819 40.000 26.84 26.84 42.51 2.24
395 398 6.369890 ACGAAGTGTCAGTCGACTATTACTTA 59.630 38.462 26.69 9.36 42.51 2.24
396 399 6.682020 CGAAGTGTCAGTCGACTATTACTTAC 59.318 42.308 26.69 21.01 43.06 2.34
397 400 7.412781 CGAAGTGTCAGTCGACTATTACTTACT 60.413 40.741 26.69 18.45 43.06 2.24
398 401 7.306205 AGTGTCAGTCGACTATTACTTACTC 57.694 40.000 19.57 8.61 43.06 2.59
399 402 6.315891 AGTGTCAGTCGACTATTACTTACTCC 59.684 42.308 19.57 4.01 43.06 3.85
400 403 5.587844 TGTCAGTCGACTATTACTTACTCCC 59.412 44.000 19.57 0.00 43.06 4.30
401 404 5.821995 GTCAGTCGACTATTACTTACTCCCT 59.178 44.000 19.57 0.00 39.22 4.20
402 405 6.018016 GTCAGTCGACTATTACTTACTCCCTC 60.018 46.154 19.57 0.00 39.22 4.30
403 406 5.239087 CAGTCGACTATTACTTACTCCCTCC 59.761 48.000 19.57 0.00 0.00 4.30
404 407 4.213059 GTCGACTATTACTTACTCCCTCCG 59.787 50.000 8.70 0.00 0.00 4.63
405 408 4.133078 CGACTATTACTTACTCCCTCCGT 58.867 47.826 0.00 0.00 0.00 4.69
406 409 4.213059 CGACTATTACTTACTCCCTCCGTC 59.787 50.000 0.00 0.00 0.00 4.79
407 410 4.468713 ACTATTACTTACTCCCTCCGTCC 58.531 47.826 0.00 0.00 0.00 4.79
408 411 2.149973 TTACTTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
409 412 1.002069 TACTTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
410 413 0.115745 ACTTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
411 414 1.272807 CTTACTCCCTCCGTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
412 415 1.626825 CTTACTCCCTCCGTCCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
413 416 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
414 417 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
415 418 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
416 419 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
417 420 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
418 421 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
419 422 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
420 423 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
421 424 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
422 425 5.433526 CCTCCGTCCCAAAATATAAGAACA 58.566 41.667 0.00 0.00 0.00 3.18
423 426 5.883673 CCTCCGTCCCAAAATATAAGAACAA 59.116 40.000 0.00 0.00 0.00 2.83
424 427 6.376018 CCTCCGTCCCAAAATATAAGAACAAA 59.624 38.462 0.00 0.00 0.00 2.83
425 428 7.094118 CCTCCGTCCCAAAATATAAGAACAAAA 60.094 37.037 0.00 0.00 0.00 2.44
426 429 7.595604 TCCGTCCCAAAATATAAGAACAAAAC 58.404 34.615 0.00 0.00 0.00 2.43
427 430 6.525280 CCGTCCCAAAATATAAGAACAAAACG 59.475 38.462 0.00 0.00 0.00 3.60
428 431 7.079475 CGTCCCAAAATATAAGAACAAAACGT 58.921 34.615 0.00 0.00 0.00 3.99
429 432 7.592164 CGTCCCAAAATATAAGAACAAAACGTT 59.408 33.333 0.00 0.00 41.86 3.99
430 433 9.251792 GTCCCAAAATATAAGAACAAAACGTTT 57.748 29.630 7.96 7.96 38.19 3.60
431 434 9.819267 TCCCAAAATATAAGAACAAAACGTTTT 57.181 25.926 20.26 20.26 38.19 2.43
442 445 9.471084 AAGAACAAAACGTTTTTATATTCTGGG 57.529 29.630 23.14 10.59 38.19 4.45
443 446 8.852135 AGAACAAAACGTTTTTATATTCTGGGA 58.148 29.630 23.14 0.00 38.19 4.37
444 447 9.634163 GAACAAAACGTTTTTATATTCTGGGAT 57.366 29.630 23.14 3.51 38.19 3.85
449 452 8.904099 AACGTTTTTATATTCTGGGATAGAGG 57.096 34.615 0.00 0.00 36.61 3.69
450 453 7.450903 ACGTTTTTATATTCTGGGATAGAGGG 58.549 38.462 0.00 0.00 36.61 4.30
451 454 7.291651 ACGTTTTTATATTCTGGGATAGAGGGA 59.708 37.037 0.00 0.00 36.61 4.20
452 455 7.819900 CGTTTTTATATTCTGGGATAGAGGGAG 59.180 40.741 0.00 0.00 36.61 4.30
453 456 8.661345 GTTTTTATATTCTGGGATAGAGGGAGT 58.339 37.037 0.00 0.00 36.61 3.85
454 457 9.907819 TTTTTATATTCTGGGATAGAGGGAGTA 57.092 33.333 0.00 0.00 36.61 2.59
455 458 9.907819 TTTTATATTCTGGGATAGAGGGAGTAA 57.092 33.333 0.00 0.00 36.61 2.24
458 461 8.997301 ATATTCTGGGATAGAGGGAGTAATTT 57.003 34.615 0.00 0.00 36.61 1.82
459 462 6.749036 TTCTGGGATAGAGGGAGTAATTTC 57.251 41.667 0.00 0.00 36.61 2.17
460 463 6.044411 TCTGGGATAGAGGGAGTAATTTCT 57.956 41.667 0.00 0.00 0.00 2.52
461 464 6.453476 TCTGGGATAGAGGGAGTAATTTCTT 58.547 40.000 0.00 0.00 0.00 2.52
462 465 6.327626 TCTGGGATAGAGGGAGTAATTTCTTG 59.672 42.308 0.00 0.00 0.00 3.02
463 466 5.163195 TGGGATAGAGGGAGTAATTTCTTGC 60.163 44.000 0.00 0.00 0.00 4.01
464 467 5.163195 GGGATAGAGGGAGTAATTTCTTGCA 60.163 44.000 0.00 0.00 0.00 4.08
465 468 6.466470 GGGATAGAGGGAGTAATTTCTTGCAT 60.466 42.308 0.00 0.00 0.00 3.96
466 469 6.429385 GGATAGAGGGAGTAATTTCTTGCATG 59.571 42.308 0.00 0.00 0.00 4.06
467 470 3.950395 AGAGGGAGTAATTTCTTGCATGC 59.050 43.478 11.82 11.82 0.00 4.06
468 471 3.696051 GAGGGAGTAATTTCTTGCATGCA 59.304 43.478 18.46 18.46 0.00 3.96
469 472 4.088634 AGGGAGTAATTTCTTGCATGCAA 58.911 39.130 30.12 30.12 0.00 4.08
470 473 4.527816 AGGGAGTAATTTCTTGCATGCAAA 59.472 37.500 31.37 19.06 35.33 3.68
471 474 4.866486 GGGAGTAATTTCTTGCATGCAAAG 59.134 41.667 31.37 23.99 35.33 2.77
472 475 5.336690 GGGAGTAATTTCTTGCATGCAAAGA 60.337 40.000 31.37 25.58 35.33 2.52
473 476 5.803967 GGAGTAATTTCTTGCATGCAAAGAG 59.196 40.000 31.37 21.20 35.33 2.85
474 477 6.349611 GGAGTAATTTCTTGCATGCAAAGAGA 60.350 38.462 31.37 23.08 35.33 3.10
475 478 6.985117 AGTAATTTCTTGCATGCAAAGAGAA 58.015 32.000 31.37 26.91 35.33 2.87
476 479 7.088905 AGTAATTTCTTGCATGCAAAGAGAAG 58.911 34.615 31.37 19.78 35.33 2.85
477 480 5.717078 ATTTCTTGCATGCAAAGAGAAGA 57.283 34.783 31.37 21.68 35.33 2.87
478 481 5.518848 TTTCTTGCATGCAAAGAGAAGAA 57.481 34.783 31.37 25.60 35.33 2.52
479 482 5.518848 TTCTTGCATGCAAAGAGAAGAAA 57.481 34.783 31.37 9.79 35.33 2.52
480 483 4.863491 TCTTGCATGCAAAGAGAAGAAAC 58.137 39.130 31.37 0.00 35.33 2.78
481 484 3.648339 TGCATGCAAAGAGAAGAAACC 57.352 42.857 20.30 0.00 0.00 3.27
482 485 2.030893 TGCATGCAAAGAGAAGAAACCG 60.031 45.455 20.30 0.00 0.00 4.44
483 486 2.226437 GCATGCAAAGAGAAGAAACCGA 59.774 45.455 14.21 0.00 0.00 4.69
484 487 3.119708 GCATGCAAAGAGAAGAAACCGAT 60.120 43.478 14.21 0.00 0.00 4.18
491 494 4.329462 AGAGAAGAAACCGATATCAGCC 57.671 45.455 3.12 0.00 0.00 4.85
529 575 0.875059 GCTGTACCAAGCCAACTGAC 59.125 55.000 0.00 0.00 37.20 3.51
532 578 1.346395 TGTACCAAGCCAACTGACGAT 59.654 47.619 0.00 0.00 0.00 3.73
534 580 0.670546 ACCAAGCCAACTGACGATCG 60.671 55.000 14.88 14.88 0.00 3.69
596 644 2.032030 ACATGTGTTTTGTCTACGCTGC 60.032 45.455 0.00 0.00 0.00 5.25
601 649 1.289109 TTTTGTCTACGCTGCGCTCC 61.289 55.000 23.51 8.26 0.00 4.70
604 652 3.826754 TCTACGCTGCGCTCCTGG 61.827 66.667 23.51 4.56 0.00 4.45
605 653 3.826754 CTACGCTGCGCTCCTGGA 61.827 66.667 23.51 0.00 0.00 3.86
614 662 0.519077 GCGCTCCTGGAGAAAACAAG 59.481 55.000 27.53 9.19 0.00 3.16
618 666 3.306088 CGCTCCTGGAGAAAACAAGTCTA 60.306 47.826 27.53 0.00 0.00 2.59
624 687 7.287061 TCCTGGAGAAAACAAGTCTATGAAAA 58.713 34.615 0.00 0.00 0.00 2.29
654 717 3.386592 GAGCAGCACTCACTCCCT 58.613 61.111 0.00 0.00 45.49 4.20
655 718 1.676384 GAGCAGCACTCACTCCCTT 59.324 57.895 0.00 0.00 45.49 3.95
656 719 0.036022 GAGCAGCACTCACTCCCTTT 59.964 55.000 0.00 0.00 45.49 3.11
657 720 0.250640 AGCAGCACTCACTCCCTTTG 60.251 55.000 0.00 0.00 0.00 2.77
658 721 0.250467 GCAGCACTCACTCCCTTTGA 60.250 55.000 0.00 0.00 0.00 2.69
660 723 1.345741 CAGCACTCACTCCCTTTGAGA 59.654 52.381 6.37 0.00 44.42 3.27
661 724 1.622811 AGCACTCACTCCCTTTGAGAG 59.377 52.381 6.37 0.00 44.42 3.20
662 725 1.338579 GCACTCACTCCCTTTGAGAGG 60.339 57.143 6.37 0.06 44.42 3.69
699 762 1.285578 CGTTTTGCAACCACCAAAGG 58.714 50.000 0.00 0.00 34.10 3.11
700 763 1.134965 CGTTTTGCAACCACCAAAGGA 60.135 47.619 0.00 0.00 34.10 3.36
719 782 1.623811 GACCAAAGCTACTCCACTCCA 59.376 52.381 0.00 0.00 0.00 3.86
729 792 1.344763 ACTCCACTCCAGCAAGTACAC 59.655 52.381 0.00 0.00 0.00 2.90
730 793 1.344438 CTCCACTCCAGCAAGTACACA 59.656 52.381 0.00 0.00 0.00 3.72
822 888 1.691195 CCACCCAAACCCAACCCAAC 61.691 60.000 0.00 0.00 0.00 3.77
823 889 1.383386 ACCCAAACCCAACCCAACC 60.383 57.895 0.00 0.00 0.00 3.77
824 890 2.144078 CCCAAACCCAACCCAACCC 61.144 63.158 0.00 0.00 0.00 4.11
825 891 1.383248 CCAAACCCAACCCAACCCA 60.383 57.895 0.00 0.00 0.00 4.51
826 892 0.983378 CCAAACCCAACCCAACCCAA 60.983 55.000 0.00 0.00 0.00 4.12
827 893 0.179234 CAAACCCAACCCAACCCAAC 59.821 55.000 0.00 0.00 0.00 3.77
828 894 0.983905 AAACCCAACCCAACCCAACC 60.984 55.000 0.00 0.00 0.00 3.77
829 895 2.525629 CCCAACCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
830 896 2.283809 CCAACCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
831 897 1.836604 CCAACCCAACCCAACCCAG 60.837 63.158 0.00 0.00 0.00 4.45
925 998 1.382009 AAACCACCACCAACACCCC 60.382 57.895 0.00 0.00 0.00 4.95
940 1013 2.570284 CCCCGCAAAAGAACCACCC 61.570 63.158 0.00 0.00 0.00 4.61
1031 1104 4.748798 CCTCCACCTCCCCTGCCT 62.749 72.222 0.00 0.00 0.00 4.75
1032 1105 3.406200 CTCCACCTCCCCTGCCTG 61.406 72.222 0.00 0.00 0.00 4.85
1035 1108 4.421515 CACCTCCCCTGCCTGCTG 62.422 72.222 0.00 0.00 0.00 4.41
1100 1202 1.448717 GAGCACGAGGAAGGGAAGC 60.449 63.158 0.00 0.00 0.00 3.86
1103 1205 1.975327 CACGAGGAAGGGAAGCAGA 59.025 57.895 0.00 0.00 0.00 4.26
1110 1212 0.905357 GAAGGGAAGCAGAGTAGCCA 59.095 55.000 0.00 0.00 34.23 4.75
1401 1503 1.202710 TCCTCGGCAACAAGTAAGCAA 60.203 47.619 0.00 0.00 0.00 3.91
1453 1568 0.674895 CGCCTCTTCTTTCCCTGGTG 60.675 60.000 0.00 0.00 0.00 4.17
1462 1577 0.771127 TTTCCCTGGTGTCTTGGAGG 59.229 55.000 0.00 0.00 0.00 4.30
1463 1578 0.104672 TTCCCTGGTGTCTTGGAGGA 60.105 55.000 0.00 0.00 0.00 3.71
1464 1579 0.104672 TCCCTGGTGTCTTGGAGGAA 60.105 55.000 0.00 0.00 0.00 3.36
1466 1581 0.326264 CCTGGTGTCTTGGAGGAAGG 59.674 60.000 0.00 0.00 31.85 3.46
1467 1582 1.352083 CTGGTGTCTTGGAGGAAGGA 58.648 55.000 0.00 0.00 31.85 3.36
1683 1807 2.368011 CCCCGTCTTCCCTTCCTCC 61.368 68.421 0.00 0.00 0.00 4.30
1839 1969 0.898789 TGAACCTCGACCTGGACCTC 60.899 60.000 0.00 0.00 0.00 3.85
1861 1991 3.068064 TGTCGATGAGCCTGCCGA 61.068 61.111 0.00 0.00 0.00 5.54
2094 2228 3.420839 ACAAAGCACAAAACGAAGGAG 57.579 42.857 0.00 0.00 0.00 3.69
2104 2238 0.705253 AACGAAGGAGGAGAGGGAGA 59.295 55.000 0.00 0.00 0.00 3.71
2105 2239 0.705253 ACGAAGGAGGAGAGGGAGAA 59.295 55.000 0.00 0.00 0.00 2.87
2107 2241 2.180276 CGAAGGAGGAGAGGGAGAAAA 58.820 52.381 0.00 0.00 0.00 2.29
2196 2333 7.168637 CCAAATATGATTCATTTCTTCTTGCCG 59.831 37.037 4.14 0.00 0.00 5.69
2272 2415 3.372440 AAGGATCTAGGGTGGCAAAAG 57.628 47.619 0.00 0.00 0.00 2.27
2281 2424 4.650972 AGGGTGGCAAAAGTTGATAGTA 57.349 40.909 0.00 0.00 0.00 1.82
2283 2426 3.442625 GGGTGGCAAAAGTTGATAGTACC 59.557 47.826 0.00 0.00 0.00 3.34
2289 2432 5.816258 GGCAAAAGTTGATAGTACCTACTCC 59.184 44.000 0.00 0.00 37.73 3.85
2293 2436 5.064314 AGTTGATAGTACCTACTCCCTCC 57.936 47.826 0.00 0.00 37.73 4.30
2294 2437 3.784511 TGATAGTACCTACTCCCTCCG 57.215 52.381 0.00 0.00 37.73 4.63
2295 2438 3.051581 TGATAGTACCTACTCCCTCCGT 58.948 50.000 0.00 0.00 37.73 4.69
2296 2439 3.072184 TGATAGTACCTACTCCCTCCGTC 59.928 52.174 0.00 0.00 37.73 4.79
2297 2440 0.550432 AGTACCTACTCCCTCCGTCC 59.450 60.000 0.00 0.00 0.00 4.79
2298 2441 0.817229 GTACCTACTCCCTCCGTCCG 60.817 65.000 0.00 0.00 0.00 4.79
2299 2442 1.987807 TACCTACTCCCTCCGTCCGG 61.988 65.000 0.00 0.00 0.00 5.14
2300 2443 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
2301 2444 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2302 2445 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2303 2446 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2304 2447 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2305 2448 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2306 2449 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2307 2450 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2308 2451 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2309 2452 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2310 2453 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2311 2454 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2312 2455 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2313 2456 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2314 2457 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2315 2458 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2316 2459 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2317 2460 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2318 2461 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2319 2462 7.201574 CGTCCGGAAATACTTGTCATCAAAATA 60.202 37.037 5.23 0.00 32.87 1.40
2320 2463 8.455682 GTCCGGAAATACTTGTCATCAAAATAA 58.544 33.333 5.23 0.00 32.87 1.40
2321 2464 9.015367 TCCGGAAATACTTGTCATCAAAATAAA 57.985 29.630 0.00 0.00 32.87 1.40
2322 2465 9.801873 CCGGAAATACTTGTCATCAAAATAAAT 57.198 29.630 0.00 0.00 32.87 1.40
2407 2550 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2408 2551 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2560 2858 2.354403 CGTGTTTTGGGTAGGTAGGGAG 60.354 54.545 0.00 0.00 0.00 4.30
2598 3415 3.057526 CCCTCGAGGAAATGAAAACAACC 60.058 47.826 33.39 0.00 38.24 3.77
2608 3425 8.082242 AGGAAATGAAAACAACCTATTTCTTCG 58.918 33.333 0.00 0.00 37.69 3.79
2624 3441 7.687941 ATTTCTTCGTCCATTTTGTAGTCAT 57.312 32.000 0.00 0.00 0.00 3.06
2640 3457 2.072298 GTCATCACTGCAGGACTCAAC 58.928 52.381 19.93 5.21 0.00 3.18
2833 3657 3.192001 TGAATTAGCGGTTAGTCACGAGT 59.808 43.478 0.00 0.00 0.00 4.18
2836 3660 1.174783 AGCGGTTAGTCACGAGTGAT 58.825 50.000 9.29 2.03 42.18 3.06
2839 3663 2.353889 GCGGTTAGTCACGAGTGATCTA 59.646 50.000 9.29 9.54 42.18 1.98
2840 3664 3.546417 GCGGTTAGTCACGAGTGATCTAG 60.546 52.174 9.29 1.62 42.18 2.43
2841 3665 3.546417 CGGTTAGTCACGAGTGATCTAGC 60.546 52.174 9.29 12.76 42.18 3.42
2842 3666 3.377485 GGTTAGTCACGAGTGATCTAGCA 59.623 47.826 9.29 0.00 42.18 3.49
2843 3667 4.036971 GGTTAGTCACGAGTGATCTAGCAT 59.963 45.833 9.29 0.00 42.18 3.79
2917 3741 3.525619 TTCGACCCGAAGATGGTTG 57.474 52.632 0.00 0.00 41.05 3.77
2920 3744 1.077716 GACCCGAAGATGGTTGGGG 60.078 63.158 3.47 3.47 46.38 4.96
2990 3815 0.899720 TCGGCGTGGAATAAGGTCTT 59.100 50.000 6.85 0.00 0.00 3.01
3013 3838 2.328099 CCTTGCCCACGTTGAGAGC 61.328 63.158 0.00 0.00 0.00 4.09
3042 3867 2.494471 TCGTATGGTTAGGAGGTGTGTG 59.506 50.000 0.00 0.00 0.00 3.82
3043 3868 2.232941 CGTATGGTTAGGAGGTGTGTGT 59.767 50.000 0.00 0.00 0.00 3.72
3055 3880 1.317613 GTGTGTGTGGAAATCTGGCA 58.682 50.000 0.00 0.00 0.00 4.92
3066 3891 3.691609 GGAAATCTGGCACTTTGGTCTAG 59.308 47.826 0.00 0.00 0.00 2.43
3067 3892 2.409948 ATCTGGCACTTTGGTCTAGC 57.590 50.000 0.00 0.00 0.00 3.42
3068 3893 0.037326 TCTGGCACTTTGGTCTAGCG 60.037 55.000 0.00 0.00 0.00 4.26
3069 3894 0.320771 CTGGCACTTTGGTCTAGCGT 60.321 55.000 0.00 0.00 0.00 5.07
3070 3895 0.970640 TGGCACTTTGGTCTAGCGTA 59.029 50.000 0.00 0.00 0.00 4.42
3071 3896 1.337447 TGGCACTTTGGTCTAGCGTAC 60.337 52.381 0.00 0.00 0.00 3.67
3072 3897 1.067071 GGCACTTTGGTCTAGCGTACT 60.067 52.381 0.00 0.00 0.00 2.73
3073 3898 2.165030 GGCACTTTGGTCTAGCGTACTA 59.835 50.000 0.00 0.00 0.00 1.82
3074 3899 3.181478 GGCACTTTGGTCTAGCGTACTAT 60.181 47.826 0.00 0.00 0.00 2.12
3075 3900 3.797256 GCACTTTGGTCTAGCGTACTATG 59.203 47.826 0.00 0.00 0.00 2.23
3076 3901 4.439700 GCACTTTGGTCTAGCGTACTATGA 60.440 45.833 0.00 0.00 0.00 2.15
3077 3902 5.035443 CACTTTGGTCTAGCGTACTATGAC 58.965 45.833 0.00 0.00 0.00 3.06
3078 3903 4.703575 ACTTTGGTCTAGCGTACTATGACA 59.296 41.667 0.00 0.00 32.57 3.58
3079 3904 5.184479 ACTTTGGTCTAGCGTACTATGACAA 59.816 40.000 0.00 0.00 32.57 3.18
3080 3905 4.895224 TGGTCTAGCGTACTATGACAAG 57.105 45.455 0.00 0.00 32.57 3.16
3081 3906 3.066342 TGGTCTAGCGTACTATGACAAGC 59.934 47.826 0.00 0.00 32.57 4.01
3082 3907 3.066342 GGTCTAGCGTACTATGACAAGCA 59.934 47.826 0.00 0.00 32.57 3.91
3083 3908 4.261656 GGTCTAGCGTACTATGACAAGCAT 60.262 45.833 0.00 0.00 41.08 3.79
3084 3909 4.677378 GTCTAGCGTACTATGACAAGCATG 59.323 45.833 0.00 0.00 37.87 4.06
3085 3910 3.526931 AGCGTACTATGACAAGCATGT 57.473 42.857 0.00 0.00 44.25 3.21
3086 3911 4.649088 AGCGTACTATGACAAGCATGTA 57.351 40.909 0.00 0.00 40.74 2.29
3087 3912 4.611943 AGCGTACTATGACAAGCATGTAG 58.388 43.478 0.00 0.00 40.74 2.74
3088 3913 4.338400 AGCGTACTATGACAAGCATGTAGA 59.662 41.667 0.00 0.00 40.74 2.59
3089 3914 5.041287 GCGTACTATGACAAGCATGTAGAA 58.959 41.667 0.00 0.00 40.74 2.10
3090 3915 5.692204 GCGTACTATGACAAGCATGTAGAAT 59.308 40.000 0.00 0.00 40.74 2.40
3091 3916 6.861572 GCGTACTATGACAAGCATGTAGAATA 59.138 38.462 0.00 0.00 40.74 1.75
3092 3917 7.381408 GCGTACTATGACAAGCATGTAGAATAA 59.619 37.037 0.00 0.00 40.74 1.40
3093 3918 9.244799 CGTACTATGACAAGCATGTAGAATAAA 57.755 33.333 0.00 0.00 40.74 1.40
3097 3922 9.425893 CTATGACAAGCATGTAGAATAAAAACG 57.574 33.333 0.00 0.00 40.74 3.60
3098 3923 7.197071 TGACAAGCATGTAGAATAAAAACGT 57.803 32.000 0.00 0.00 40.74 3.99
3099 3924 7.644490 TGACAAGCATGTAGAATAAAAACGTT 58.356 30.769 0.00 0.00 40.74 3.99
3100 3925 8.775527 TGACAAGCATGTAGAATAAAAACGTTA 58.224 29.630 0.00 0.00 40.74 3.18
3101 3926 9.769093 GACAAGCATGTAGAATAAAAACGTTAT 57.231 29.630 0.00 0.00 40.74 1.89
3102 3927 9.769093 ACAAGCATGTAGAATAAAAACGTTATC 57.231 29.630 0.00 0.00 38.24 1.75
3103 3928 9.988350 CAAGCATGTAGAATAAAAACGTTATCT 57.012 29.630 0.00 3.66 0.00 1.98
3112 3937 8.520351 AGAATAAAAACGTTATCTTTTCCAGGG 58.480 33.333 0.00 0.00 0.00 4.45
3113 3938 4.514781 AAAACGTTATCTTTTCCAGGGC 57.485 40.909 0.00 0.00 0.00 5.19
3114 3939 1.734163 ACGTTATCTTTTCCAGGGCG 58.266 50.000 0.00 0.00 0.00 6.13
3115 3940 1.276989 ACGTTATCTTTTCCAGGGCGA 59.723 47.619 0.00 0.00 0.00 5.54
3116 3941 1.664151 CGTTATCTTTTCCAGGGCGAC 59.336 52.381 0.00 0.00 0.00 5.19
3117 3942 2.706890 GTTATCTTTTCCAGGGCGACA 58.293 47.619 0.00 0.00 0.00 4.35
3118 3943 3.078837 GTTATCTTTTCCAGGGCGACAA 58.921 45.455 0.00 0.00 0.00 3.18
3119 3944 2.514458 ATCTTTTCCAGGGCGACAAT 57.486 45.000 0.00 0.00 0.00 2.71
3120 3945 2.286365 TCTTTTCCAGGGCGACAATT 57.714 45.000 0.00 0.00 0.00 2.32
3121 3946 2.593026 TCTTTTCCAGGGCGACAATTT 58.407 42.857 0.00 0.00 0.00 1.82
3122 3947 2.295909 TCTTTTCCAGGGCGACAATTTG 59.704 45.455 0.00 0.00 0.00 2.32
3123 3948 0.316841 TTTCCAGGGCGACAATTTGC 59.683 50.000 0.00 0.00 0.00 3.68
3124 3949 0.539438 TTCCAGGGCGACAATTTGCT 60.539 50.000 0.00 0.00 31.91 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.025256 CGTCGCGCGCCTAATTTTAA 59.975 50.000 27.95 0.00 0.00 1.52
1 2 1.632120 CGTCGCGCGCCTAATTTTA 59.368 52.632 27.95 0.15 0.00 1.52
2 3 2.398036 CGTCGCGCGCCTAATTTT 59.602 55.556 27.95 0.00 0.00 1.82
14 15 2.434134 CCGTAACTCACAGCGTCGC 61.434 63.158 9.80 9.80 0.00 5.19
23 24 2.553602 TCGTTAGCTCAACCGTAACTCA 59.446 45.455 0.00 0.00 33.19 3.41
24 25 3.207474 TCGTTAGCTCAACCGTAACTC 57.793 47.619 0.00 0.00 33.19 3.01
26 27 2.089581 CGTTCGTTAGCTCAACCGTAAC 59.910 50.000 0.00 0.00 33.19 2.50
48 49 1.634757 TAGCATGGCAAGCGTTCGTG 61.635 55.000 9.26 0.00 37.01 4.35
59 60 1.210478 TCTTTCCACTCCTAGCATGGC 59.790 52.381 0.00 0.00 33.20 4.40
66 67 3.583086 CACCCTTCTTCTTTCCACTCCTA 59.417 47.826 0.00 0.00 0.00 2.94
67 68 2.373502 CACCCTTCTTCTTTCCACTCCT 59.626 50.000 0.00 0.00 0.00 3.69
68 69 2.784347 CACCCTTCTTCTTTCCACTCC 58.216 52.381 0.00 0.00 0.00 3.85
70 71 1.777272 AGCACCCTTCTTCTTTCCACT 59.223 47.619 0.00 0.00 0.00 4.00
71 72 2.155279 GAGCACCCTTCTTCTTTCCAC 58.845 52.381 0.00 0.00 0.00 4.02
72 73 1.073923 GGAGCACCCTTCTTCTTTCCA 59.926 52.381 0.00 0.00 0.00 3.53
73 74 1.073923 TGGAGCACCCTTCTTCTTTCC 59.926 52.381 0.00 0.00 35.38 3.13
76 77 3.308473 GGTATTGGAGCACCCTTCTTCTT 60.308 47.826 0.00 0.00 35.38 2.52
77 78 2.239907 GGTATTGGAGCACCCTTCTTCT 59.760 50.000 0.00 0.00 35.38 2.85
78 79 2.644676 GGTATTGGAGCACCCTTCTTC 58.355 52.381 0.00 0.00 35.38 2.87
88 91 2.024176 ACATGTGTCGGTATTGGAGC 57.976 50.000 0.00 0.00 0.00 4.70
108 111 5.183969 AGACTTGTAGCGAGTCATGTACTA 58.816 41.667 16.19 0.00 44.82 1.82
110 113 4.358494 AGACTTGTAGCGAGTCATGTAC 57.642 45.455 16.19 0.00 44.82 2.90
111 114 4.700692 AGAAGACTTGTAGCGAGTCATGTA 59.299 41.667 16.19 0.00 44.82 2.29
112 115 3.508012 AGAAGACTTGTAGCGAGTCATGT 59.492 43.478 16.19 3.20 44.82 3.21
113 116 4.103365 AGAAGACTTGTAGCGAGTCATG 57.897 45.455 16.19 0.00 44.82 3.07
114 117 4.944930 AGTAGAAGACTTGTAGCGAGTCAT 59.055 41.667 16.19 6.63 44.82 3.06
120 123 8.281893 GGTTATACTAGTAGAAGACTTGTAGCG 58.718 40.741 10.18 0.00 45.52 4.26
187 190 3.420893 TGTTTCAAGCATAGGTCCCTTG 58.579 45.455 0.00 0.42 37.80 3.61
197 200 2.961062 AGCCAAGACTTGTTTCAAGCAT 59.039 40.909 14.03 0.00 0.00 3.79
201 204 7.633193 TTAAGTAAGCCAAGACTTGTTTCAA 57.367 32.000 14.03 0.00 36.58 2.69
202 205 7.500892 TCATTAAGTAAGCCAAGACTTGTTTCA 59.499 33.333 14.03 0.00 36.58 2.69
203 206 7.871853 TCATTAAGTAAGCCAAGACTTGTTTC 58.128 34.615 14.03 3.30 36.58 2.78
204 207 7.502561 ACTCATTAAGTAAGCCAAGACTTGTTT 59.497 33.333 14.03 10.15 36.58 2.83
207 210 6.428159 ACACTCATTAAGTAAGCCAAGACTTG 59.572 38.462 8.31 8.31 36.58 3.16
208 211 6.428159 CACACTCATTAAGTAAGCCAAGACTT 59.572 38.462 0.00 0.00 36.07 3.01
210 213 5.122396 CCACACTCATTAAGTAAGCCAAGAC 59.878 44.000 0.00 0.00 36.07 3.01
211 214 5.245531 CCACACTCATTAAGTAAGCCAAGA 58.754 41.667 0.00 0.00 36.07 3.02
212 215 4.142600 GCCACACTCATTAAGTAAGCCAAG 60.143 45.833 0.00 0.00 36.07 3.61
213 216 3.756434 GCCACACTCATTAAGTAAGCCAA 59.244 43.478 0.00 0.00 36.07 4.52
215 218 3.610911 AGCCACACTCATTAAGTAAGCC 58.389 45.455 0.00 0.00 36.07 4.35
217 220 5.978814 ACCTAGCCACACTCATTAAGTAAG 58.021 41.667 0.00 0.00 36.07 2.34
218 221 5.720041 AGACCTAGCCACACTCATTAAGTAA 59.280 40.000 0.00 0.00 36.07 2.24
219 222 5.269991 AGACCTAGCCACACTCATTAAGTA 58.730 41.667 0.00 0.00 36.07 2.24
220 223 4.097418 AGACCTAGCCACACTCATTAAGT 58.903 43.478 0.00 0.00 39.44 2.24
221 224 4.160439 TGAGACCTAGCCACACTCATTAAG 59.840 45.833 0.00 0.00 33.57 1.85
222 225 4.093743 TGAGACCTAGCCACACTCATTAA 58.906 43.478 0.00 0.00 33.57 1.40
223 226 3.701542 CTGAGACCTAGCCACACTCATTA 59.298 47.826 0.00 0.00 37.07 1.90
224 227 2.499289 CTGAGACCTAGCCACACTCATT 59.501 50.000 0.00 0.00 37.07 2.57
225 228 2.106566 CTGAGACCTAGCCACACTCAT 58.893 52.381 0.00 0.00 37.07 2.90
226 229 1.203063 ACTGAGACCTAGCCACACTCA 60.203 52.381 0.00 0.00 36.42 3.41
227 230 1.474879 GACTGAGACCTAGCCACACTC 59.525 57.143 0.00 0.00 0.00 3.51
228 231 1.551452 GACTGAGACCTAGCCACACT 58.449 55.000 0.00 0.00 0.00 3.55
229 232 0.171455 CGACTGAGACCTAGCCACAC 59.829 60.000 0.00 0.00 0.00 3.82
230 233 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
231 234 0.452585 GTCGACTGAGACCTAGCCAC 59.547 60.000 8.70 0.00 35.22 5.01
232 235 0.328592 AGTCGACTGAGACCTAGCCA 59.671 55.000 19.30 0.00 41.83 4.75
233 236 0.736053 CAGTCGACTGAGACCTAGCC 59.264 60.000 36.73 0.00 46.59 3.93
243 246 5.230942 ACTTGGTTAAATCTCAGTCGACTG 58.769 41.667 34.76 34.76 45.08 3.51
244 247 5.244178 AGACTTGGTTAAATCTCAGTCGACT 59.756 40.000 13.58 13.58 0.00 4.18
245 248 5.471257 AGACTTGGTTAAATCTCAGTCGAC 58.529 41.667 7.70 7.70 0.00 4.20
246 249 5.723672 AGACTTGGTTAAATCTCAGTCGA 57.276 39.130 0.00 0.00 0.00 4.20
247 250 7.091443 ACTAAGACTTGGTTAAATCTCAGTCG 58.909 38.462 0.00 0.00 0.00 4.18
248 251 8.088981 TGACTAAGACTTGGTTAAATCTCAGTC 58.911 37.037 5.60 3.04 0.00 3.51
249 252 7.963532 TGACTAAGACTTGGTTAAATCTCAGT 58.036 34.615 5.60 0.00 0.00 3.41
250 253 8.833231 TTGACTAAGACTTGGTTAAATCTCAG 57.167 34.615 5.60 0.00 0.00 3.35
251 254 8.429641 ACTTGACTAAGACTTGGTTAAATCTCA 58.570 33.333 5.60 0.00 37.36 3.27
252 255 8.834749 ACTTGACTAAGACTTGGTTAAATCTC 57.165 34.615 5.60 0.00 37.36 2.75
256 259 9.841295 ACATTACTTGACTAAGACTTGGTTAAA 57.159 29.630 5.60 3.65 37.36 1.52
259 262 9.269453 GTTACATTACTTGACTAAGACTTGGTT 57.731 33.333 5.60 0.00 37.36 3.67
260 263 8.426489 TGTTACATTACTTGACTAAGACTTGGT 58.574 33.333 3.54 3.54 37.36 3.67
261 264 8.827177 TGTTACATTACTTGACTAAGACTTGG 57.173 34.615 0.00 0.00 37.36 3.61
263 266 8.936864 GCATGTTACATTACTTGACTAAGACTT 58.063 33.333 0.00 0.00 37.36 3.01
264 267 8.094548 TGCATGTTACATTACTTGACTAAGACT 58.905 33.333 0.00 0.00 37.36 3.24
265 268 8.251750 TGCATGTTACATTACTTGACTAAGAC 57.748 34.615 0.00 0.00 37.36 3.01
266 269 8.840833 TTGCATGTTACATTACTTGACTAAGA 57.159 30.769 0.00 0.00 37.36 2.10
267 270 9.546909 CTTTGCATGTTACATTACTTGACTAAG 57.453 33.333 0.00 0.00 39.86 2.18
268 271 9.278978 TCTTTGCATGTTACATTACTTGACTAA 57.721 29.630 0.00 0.00 0.00 2.24
269 272 8.840833 TCTTTGCATGTTACATTACTTGACTA 57.159 30.769 0.00 0.00 0.00 2.59
270 273 7.661437 TCTCTTTGCATGTTACATTACTTGACT 59.339 33.333 0.00 0.00 0.00 3.41
271 274 7.806690 TCTCTTTGCATGTTACATTACTTGAC 58.193 34.615 0.00 0.00 0.00 3.18
272 275 7.877612 TCTCTCTTTGCATGTTACATTACTTGA 59.122 33.333 0.00 0.00 0.00 3.02
273 276 8.032952 TCTCTCTTTGCATGTTACATTACTTG 57.967 34.615 0.00 0.00 0.00 3.16
274 277 8.507249 GTTCTCTCTTTGCATGTTACATTACTT 58.493 33.333 0.00 0.00 0.00 2.24
275 278 7.661437 TGTTCTCTCTTTGCATGTTACATTACT 59.339 33.333 0.00 0.00 0.00 2.24
276 279 7.806690 TGTTCTCTCTTTGCATGTTACATTAC 58.193 34.615 0.00 0.00 0.00 1.89
277 280 7.977789 TGTTCTCTCTTTGCATGTTACATTA 57.022 32.000 0.00 0.00 0.00 1.90
278 281 6.882610 TGTTCTCTCTTTGCATGTTACATT 57.117 33.333 0.00 0.00 0.00 2.71
279 282 6.712095 TCTTGTTCTCTCTTTGCATGTTACAT 59.288 34.615 0.00 0.00 0.00 2.29
280 283 6.054941 TCTTGTTCTCTCTTTGCATGTTACA 58.945 36.000 0.00 0.00 0.00 2.41
281 284 6.545504 TCTTGTTCTCTCTTTGCATGTTAC 57.454 37.500 0.00 0.00 0.00 2.50
282 285 7.566760 TTTCTTGTTCTCTCTTTGCATGTTA 57.433 32.000 0.00 0.00 0.00 2.41
283 286 6.455360 TTTCTTGTTCTCTCTTTGCATGTT 57.545 33.333 0.00 0.00 0.00 2.71
284 287 6.455360 TTTTCTTGTTCTCTCTTTGCATGT 57.545 33.333 0.00 0.00 0.00 3.21
305 308 6.367421 GTGCAAACTTTTCTTTTCGGTTTTT 58.633 32.000 0.00 0.00 0.00 1.94
306 309 5.388994 CGTGCAAACTTTTCTTTTCGGTTTT 60.389 36.000 0.00 0.00 0.00 2.43
307 310 4.090786 CGTGCAAACTTTTCTTTTCGGTTT 59.909 37.500 0.00 0.00 0.00 3.27
308 311 3.610677 CGTGCAAACTTTTCTTTTCGGTT 59.389 39.130 0.00 0.00 0.00 4.44
309 312 3.175929 CGTGCAAACTTTTCTTTTCGGT 58.824 40.909 0.00 0.00 0.00 4.69
310 313 2.533942 CCGTGCAAACTTTTCTTTTCGG 59.466 45.455 0.00 0.00 0.00 4.30
311 314 3.430931 TCCGTGCAAACTTTTCTTTTCG 58.569 40.909 0.00 0.00 0.00 3.46
312 315 4.444388 GGATCCGTGCAAACTTTTCTTTTC 59.556 41.667 0.00 0.00 0.00 2.29
313 316 4.368315 GGATCCGTGCAAACTTTTCTTTT 58.632 39.130 0.00 0.00 0.00 2.27
314 317 3.243737 GGGATCCGTGCAAACTTTTCTTT 60.244 43.478 5.45 0.00 0.00 2.52
315 318 2.296190 GGGATCCGTGCAAACTTTTCTT 59.704 45.455 5.45 0.00 0.00 2.52
316 319 1.886542 GGGATCCGTGCAAACTTTTCT 59.113 47.619 5.45 0.00 0.00 2.52
317 320 1.611491 TGGGATCCGTGCAAACTTTTC 59.389 47.619 5.45 0.00 0.00 2.29
318 321 1.698506 TGGGATCCGTGCAAACTTTT 58.301 45.000 5.45 0.00 0.00 2.27
319 322 1.923356 ATGGGATCCGTGCAAACTTT 58.077 45.000 5.45 0.00 0.00 2.66
320 323 1.545582 CAATGGGATCCGTGCAAACTT 59.454 47.619 5.45 0.00 0.00 2.66
321 324 1.176527 CAATGGGATCCGTGCAAACT 58.823 50.000 5.45 0.00 0.00 2.66
322 325 0.887933 ACAATGGGATCCGTGCAAAC 59.112 50.000 5.45 0.00 0.00 2.93
323 326 2.088423 GTACAATGGGATCCGTGCAAA 58.912 47.619 5.45 0.00 0.00 3.68
324 327 1.003696 TGTACAATGGGATCCGTGCAA 59.996 47.619 5.45 0.00 0.00 4.08
325 328 0.615850 TGTACAATGGGATCCGTGCA 59.384 50.000 5.45 4.93 0.00 4.57
326 329 1.873591 GATGTACAATGGGATCCGTGC 59.126 52.381 5.45 2.11 0.00 5.34
327 330 3.133691 CAGATGTACAATGGGATCCGTG 58.866 50.000 5.45 6.42 0.00 4.94
328 331 3.038280 TCAGATGTACAATGGGATCCGT 58.962 45.455 5.45 0.00 0.00 4.69
329 332 3.751479 TCAGATGTACAATGGGATCCG 57.249 47.619 5.45 0.00 0.00 4.18
330 333 6.611613 TCTATCAGATGTACAATGGGATCC 57.388 41.667 1.92 1.92 0.00 3.36
342 345 9.639563 AAGTCCGATGATATATCTATCAGATGT 57.360 33.333 13.79 0.00 45.25 3.06
346 349 9.871299 CGTTAAGTCCGATGATATATCTATCAG 57.129 37.037 13.79 7.78 45.25 2.90
347 350 9.609346 TCGTTAAGTCCGATGATATATCTATCA 57.391 33.333 13.79 3.51 45.91 2.15
350 353 9.445878 ACTTCGTTAAGTCCGATGATATATCTA 57.554 33.333 13.79 1.35 42.42 1.98
351 354 8.237949 CACTTCGTTAAGTCCGATGATATATCT 58.762 37.037 13.79 0.00 44.28 1.98
352 355 8.021973 ACACTTCGTTAAGTCCGATGATATATC 58.978 37.037 5.73 5.73 44.28 1.63
353 356 7.883217 ACACTTCGTTAAGTCCGATGATATAT 58.117 34.615 6.79 0.00 44.28 0.86
354 357 7.012610 TGACACTTCGTTAAGTCCGATGATATA 59.987 37.037 6.79 0.00 44.28 0.86
355 358 6.145338 ACACTTCGTTAAGTCCGATGATAT 57.855 37.500 6.79 0.00 44.28 1.63
356 359 5.124297 TGACACTTCGTTAAGTCCGATGATA 59.876 40.000 6.79 0.00 44.28 2.15
357 360 4.082408 TGACACTTCGTTAAGTCCGATGAT 60.082 41.667 6.79 0.00 44.28 2.45
358 361 3.253921 TGACACTTCGTTAAGTCCGATGA 59.746 43.478 6.79 0.00 44.28 2.92
359 362 3.571571 TGACACTTCGTTAAGTCCGATG 58.428 45.455 0.00 0.00 44.28 3.84
360 363 3.255149 ACTGACACTTCGTTAAGTCCGAT 59.745 43.478 0.00 0.00 44.28 4.18
361 364 2.620115 ACTGACACTTCGTTAAGTCCGA 59.380 45.455 0.00 0.00 44.28 4.55
362 365 2.978489 GACTGACACTTCGTTAAGTCCG 59.022 50.000 0.00 0.00 44.28 4.79
363 366 2.978489 CGACTGACACTTCGTTAAGTCC 59.022 50.000 0.00 0.00 44.28 3.85
364 367 3.663105 GTCGACTGACACTTCGTTAAGTC 59.337 47.826 8.70 0.00 44.28 3.01
377 380 5.821995 AGGGAGTAAGTAATAGTCGACTGAC 59.178 44.000 28.12 20.77 45.86 3.51
378 381 5.999044 AGGGAGTAAGTAATAGTCGACTGA 58.001 41.667 28.12 12.26 35.17 3.41
379 382 5.239087 GGAGGGAGTAAGTAATAGTCGACTG 59.761 48.000 28.12 0.00 35.17 3.51
380 383 5.375773 GGAGGGAGTAAGTAATAGTCGACT 58.624 45.833 23.66 23.66 35.17 4.18
381 384 4.213059 CGGAGGGAGTAAGTAATAGTCGAC 59.787 50.000 7.70 7.70 35.17 4.20
382 385 4.141620 ACGGAGGGAGTAAGTAATAGTCGA 60.142 45.833 0.00 0.00 35.17 4.20
383 386 4.133078 ACGGAGGGAGTAAGTAATAGTCG 58.867 47.826 0.00 0.00 35.17 4.18
384 387 4.518590 GGACGGAGGGAGTAAGTAATAGTC 59.481 50.000 0.00 0.00 33.81 2.59
385 388 4.468713 GGACGGAGGGAGTAAGTAATAGT 58.531 47.826 0.00 0.00 0.00 2.12
386 389 3.825585 GGGACGGAGGGAGTAAGTAATAG 59.174 52.174 0.00 0.00 0.00 1.73
387 390 3.205056 TGGGACGGAGGGAGTAAGTAATA 59.795 47.826 0.00 0.00 0.00 0.98
388 391 2.023695 TGGGACGGAGGGAGTAAGTAAT 60.024 50.000 0.00 0.00 0.00 1.89
389 392 1.358787 TGGGACGGAGGGAGTAAGTAA 59.641 52.381 0.00 0.00 0.00 2.24
390 393 1.002069 TGGGACGGAGGGAGTAAGTA 58.998 55.000 0.00 0.00 0.00 2.24
391 394 0.115745 TTGGGACGGAGGGAGTAAGT 59.884 55.000 0.00 0.00 0.00 2.24
392 395 1.272807 TTTGGGACGGAGGGAGTAAG 58.727 55.000 0.00 0.00 0.00 2.34
393 396 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
394 397 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
395 398 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
396 399 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
397 400 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
398 401 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
399 402 5.433526 TGTTCTTATATTTTGGGACGGAGG 58.566 41.667 0.00 0.00 0.00 4.30
400 403 6.995511 TTGTTCTTATATTTTGGGACGGAG 57.004 37.500 0.00 0.00 0.00 4.63
401 404 7.573469 CGTTTTGTTCTTATATTTTGGGACGGA 60.573 37.037 0.00 0.00 0.00 4.69
402 405 6.525280 CGTTTTGTTCTTATATTTTGGGACGG 59.475 38.462 0.00 0.00 0.00 4.79
403 406 7.079475 ACGTTTTGTTCTTATATTTTGGGACG 58.921 34.615 0.00 0.00 0.00 4.79
404 407 8.806177 AACGTTTTGTTCTTATATTTTGGGAC 57.194 30.769 0.00 0.00 35.27 4.46
405 408 9.819267 AAAACGTTTTGTTCTTATATTTTGGGA 57.181 25.926 24.68 0.00 40.84 4.37
416 419 9.471084 CCCAGAATATAAAAACGTTTTGTTCTT 57.529 29.630 25.83 16.69 40.84 2.52
417 420 8.852135 TCCCAGAATATAAAAACGTTTTGTTCT 58.148 29.630 25.83 24.43 40.84 3.01
418 421 9.634163 ATCCCAGAATATAAAAACGTTTTGTTC 57.366 29.630 25.83 23.01 40.84 3.18
423 426 9.338622 CCTCTATCCCAGAATATAAAAACGTTT 57.661 33.333 7.96 7.96 31.12 3.60
424 427 7.937394 CCCTCTATCCCAGAATATAAAAACGTT 59.063 37.037 0.00 0.00 31.12 3.99
425 428 7.291651 TCCCTCTATCCCAGAATATAAAAACGT 59.708 37.037 0.00 0.00 31.12 3.99
426 429 7.676947 TCCCTCTATCCCAGAATATAAAAACG 58.323 38.462 0.00 0.00 31.12 3.60
427 430 8.661345 ACTCCCTCTATCCCAGAATATAAAAAC 58.339 37.037 0.00 0.00 31.12 2.43
428 431 8.814448 ACTCCCTCTATCCCAGAATATAAAAA 57.186 34.615 0.00 0.00 31.12 1.94
429 432 9.907819 TTACTCCCTCTATCCCAGAATATAAAA 57.092 33.333 0.00 0.00 31.12 1.52
433 436 8.997301 AAATTACTCCCTCTATCCCAGAATAT 57.003 34.615 0.00 0.00 31.12 1.28
434 437 8.242325 AGAAATTACTCCCTCTATCCCAGAATA 58.758 37.037 0.00 0.00 31.12 1.75
435 438 7.085601 AGAAATTACTCCCTCTATCCCAGAAT 58.914 38.462 0.00 0.00 31.12 2.40
436 439 6.453476 AGAAATTACTCCCTCTATCCCAGAA 58.547 40.000 0.00 0.00 31.12 3.02
437 440 6.044411 AGAAATTACTCCCTCTATCCCAGA 57.956 41.667 0.00 0.00 0.00 3.86
438 441 6.529220 CAAGAAATTACTCCCTCTATCCCAG 58.471 44.000 0.00 0.00 0.00 4.45
439 442 5.163195 GCAAGAAATTACTCCCTCTATCCCA 60.163 44.000 0.00 0.00 0.00 4.37
440 443 5.163195 TGCAAGAAATTACTCCCTCTATCCC 60.163 44.000 0.00 0.00 0.00 3.85
441 444 5.930135 TGCAAGAAATTACTCCCTCTATCC 58.070 41.667 0.00 0.00 0.00 2.59
442 445 6.072783 GCATGCAAGAAATTACTCCCTCTATC 60.073 42.308 14.21 0.00 0.00 2.08
443 446 5.767168 GCATGCAAGAAATTACTCCCTCTAT 59.233 40.000 14.21 0.00 0.00 1.98
444 447 5.126067 GCATGCAAGAAATTACTCCCTCTA 58.874 41.667 14.21 0.00 0.00 2.43
445 448 3.950395 GCATGCAAGAAATTACTCCCTCT 59.050 43.478 14.21 0.00 0.00 3.69
446 449 3.696051 TGCATGCAAGAAATTACTCCCTC 59.304 43.478 20.30 0.00 0.00 4.30
447 450 3.700538 TGCATGCAAGAAATTACTCCCT 58.299 40.909 20.30 0.00 0.00 4.20
448 451 4.454728 TTGCATGCAAGAAATTACTCCC 57.545 40.909 28.80 0.00 0.00 4.30
449 452 5.713025 TCTTTGCATGCAAGAAATTACTCC 58.287 37.500 30.25 0.00 37.24 3.85
450 453 6.615088 TCTCTTTGCATGCAAGAAATTACTC 58.385 36.000 30.25 0.00 37.24 2.59
451 454 6.579666 TCTCTTTGCATGCAAGAAATTACT 57.420 33.333 30.25 0.00 37.24 2.24
452 455 7.086376 TCTTCTCTTTGCATGCAAGAAATTAC 58.914 34.615 30.25 0.00 37.24 1.89
453 456 7.218228 TCTTCTCTTTGCATGCAAGAAATTA 57.782 32.000 30.25 15.61 37.24 1.40
454 457 6.092955 TCTTCTCTTTGCATGCAAGAAATT 57.907 33.333 30.25 0.00 37.24 1.82
455 458 5.717078 TCTTCTCTTTGCATGCAAGAAAT 57.283 34.783 30.25 0.00 37.24 2.17
456 459 5.518848 TTCTTCTCTTTGCATGCAAGAAA 57.481 34.783 30.25 20.86 37.24 2.52
457 460 5.284079 GTTTCTTCTCTTTGCATGCAAGAA 58.716 37.500 30.25 27.07 37.24 2.52
458 461 4.261741 GGTTTCTTCTCTTTGCATGCAAGA 60.262 41.667 30.25 25.79 37.24 3.02
459 462 3.985925 GGTTTCTTCTCTTTGCATGCAAG 59.014 43.478 30.25 23.49 37.24 4.01
460 463 3.550639 CGGTTTCTTCTCTTTGCATGCAA 60.551 43.478 28.80 28.80 0.00 4.08
461 464 2.030893 CGGTTTCTTCTCTTTGCATGCA 60.031 45.455 18.46 18.46 0.00 3.96
462 465 2.226437 TCGGTTTCTTCTCTTTGCATGC 59.774 45.455 11.82 11.82 0.00 4.06
463 466 4.691860 ATCGGTTTCTTCTCTTTGCATG 57.308 40.909 0.00 0.00 0.00 4.06
464 467 6.115446 TGATATCGGTTTCTTCTCTTTGCAT 58.885 36.000 0.00 0.00 0.00 3.96
465 468 5.487433 TGATATCGGTTTCTTCTCTTTGCA 58.513 37.500 0.00 0.00 0.00 4.08
466 469 5.503194 GCTGATATCGGTTTCTTCTCTTTGC 60.503 44.000 13.12 0.00 0.00 3.68
467 470 5.007136 GGCTGATATCGGTTTCTTCTCTTTG 59.993 44.000 13.12 0.00 0.00 2.77
468 471 5.119694 GGCTGATATCGGTTTCTTCTCTTT 58.880 41.667 13.12 0.00 0.00 2.52
469 472 4.698575 GGCTGATATCGGTTTCTTCTCTT 58.301 43.478 13.12 0.00 0.00 2.85
470 473 3.243569 CGGCTGATATCGGTTTCTTCTCT 60.244 47.826 13.12 0.00 0.00 3.10
471 474 3.053455 CGGCTGATATCGGTTTCTTCTC 58.947 50.000 13.12 0.00 0.00 2.87
472 475 2.224066 CCGGCTGATATCGGTTTCTTCT 60.224 50.000 13.12 0.00 41.23 2.85
473 476 2.135933 CCGGCTGATATCGGTTTCTTC 58.864 52.381 13.12 0.00 41.23 2.87
474 477 1.760613 TCCGGCTGATATCGGTTTCTT 59.239 47.619 13.12 0.00 45.79 2.52
475 478 1.068741 GTCCGGCTGATATCGGTTTCT 59.931 52.381 13.12 0.00 45.79 2.52
476 479 1.499049 GTCCGGCTGATATCGGTTTC 58.501 55.000 13.12 3.12 45.79 2.78
477 480 0.249322 CGTCCGGCTGATATCGGTTT 60.249 55.000 13.12 0.00 45.79 3.27
478 481 1.362717 CGTCCGGCTGATATCGGTT 59.637 57.895 13.12 0.00 45.79 4.44
479 482 2.561956 CCGTCCGGCTGATATCGGT 61.562 63.158 13.12 0.00 45.79 4.69
480 483 2.258591 CCGTCCGGCTGATATCGG 59.741 66.667 7.22 7.22 46.89 4.18
491 494 2.754658 ACCTCCACTAGCCGTCCG 60.755 66.667 0.00 0.00 0.00 4.79
527 573 5.921408 AGCATCTAACCTAAATTCGATCGTC 59.079 40.000 15.94 0.00 0.00 4.20
529 575 5.059832 CGAGCATCTAACCTAAATTCGATCG 59.940 44.000 9.36 9.36 0.00 3.69
532 578 5.279384 GTCGAGCATCTAACCTAAATTCGA 58.721 41.667 0.00 0.00 32.86 3.71
534 580 5.173492 GTCGTCGAGCATCTAACCTAAATTC 59.827 44.000 0.00 0.00 0.00 2.17
596 644 1.801178 GACTTGTTTTCTCCAGGAGCG 59.199 52.381 12.26 0.00 0.00 5.03
624 687 0.746659 GCTGCTCCACCAAGTTGTTT 59.253 50.000 1.45 0.00 0.00 2.83
653 716 0.985490 CTCCCCCTCCCCTCTCAAAG 60.985 65.000 0.00 0.00 0.00 2.77
654 717 1.082954 CTCCCCCTCCCCTCTCAAA 59.917 63.158 0.00 0.00 0.00 2.69
655 718 2.787866 CTCCCCCTCCCCTCTCAA 59.212 66.667 0.00 0.00 0.00 3.02
656 719 3.368501 CCTCCCCCTCCCCTCTCA 61.369 72.222 0.00 0.00 0.00 3.27
657 720 4.890306 GCCTCCCCCTCCCCTCTC 62.890 77.778 0.00 0.00 0.00 3.20
661 724 4.523282 ATCTGCCTCCCCCTCCCC 62.523 72.222 0.00 0.00 0.00 4.81
662 725 2.851588 GATCTGCCTCCCCCTCCC 60.852 72.222 0.00 0.00 0.00 4.30
663 726 2.851588 GGATCTGCCTCCCCCTCC 60.852 72.222 0.00 0.00 0.00 4.30
699 762 1.623811 TGGAGTGGAGTAGCTTTGGTC 59.376 52.381 0.00 0.00 0.00 4.02
700 763 1.625818 CTGGAGTGGAGTAGCTTTGGT 59.374 52.381 0.00 0.00 0.00 3.67
719 782 4.460263 TGATTCCTTGTTGTGTACTTGCT 58.540 39.130 0.00 0.00 0.00 3.91
729 792 4.675114 GCTAACGTGTTTGATTCCTTGTTG 59.325 41.667 0.00 0.00 0.00 3.33
730 793 4.578928 AGCTAACGTGTTTGATTCCTTGTT 59.421 37.500 0.00 0.00 0.00 2.83
925 998 2.200899 CTTTTGGGTGGTTCTTTTGCG 58.799 47.619 0.00 0.00 0.00 4.85
1033 1106 3.634072 GCTCGCGGCTGTATGCAG 61.634 66.667 6.13 6.42 45.15 4.41
1082 1155 1.448717 GCTTCCCTTCCTCGTGCTC 60.449 63.158 0.00 0.00 0.00 4.26
1084 1157 1.743252 CTGCTTCCCTTCCTCGTGC 60.743 63.158 0.00 0.00 0.00 5.34
1086 1159 0.543174 ACTCTGCTTCCCTTCCTCGT 60.543 55.000 0.00 0.00 0.00 4.18
1088 1161 1.138069 GCTACTCTGCTTCCCTTCCTC 59.862 57.143 0.00 0.00 0.00 3.71
1401 1503 0.304705 GCATTGAAATCGCGATCGGT 59.695 50.000 23.92 10.93 36.13 4.69
1427 1529 0.176910 GAAAGAAGAGGCGGAGGAGG 59.823 60.000 0.00 0.00 0.00 4.30
1453 1568 1.349357 ACTGCTTCCTTCCTCCAAGAC 59.651 52.381 0.00 0.00 33.29 3.01
1462 1577 6.149474 TGCTTTAGTCAATAACTGCTTCCTTC 59.851 38.462 0.00 0.00 39.11 3.46
1463 1578 6.003950 TGCTTTAGTCAATAACTGCTTCCTT 58.996 36.000 0.00 0.00 39.11 3.36
1464 1579 5.560724 TGCTTTAGTCAATAACTGCTTCCT 58.439 37.500 0.00 0.00 39.11 3.36
1466 1581 5.327891 GCTGCTTTAGTCAATAACTGCTTC 58.672 41.667 0.00 0.00 39.11 3.86
1467 1582 4.142816 CGCTGCTTTAGTCAATAACTGCTT 60.143 41.667 0.00 0.00 39.11 3.91
2022 2154 1.879575 TGTATTGACCCTCCTCCAGG 58.120 55.000 0.00 0.00 43.01 4.45
2248 2391 1.992557 TGCCACCCTAGATCCTTTTGT 59.007 47.619 0.00 0.00 0.00 2.83
2254 2397 2.755103 CAACTTTTGCCACCCTAGATCC 59.245 50.000 0.00 0.00 0.00 3.36
2272 2415 3.819902 CGGAGGGAGTAGGTACTATCAAC 59.180 52.174 0.00 0.00 45.60 3.18
2281 2424 2.274760 CGGACGGAGGGAGTAGGT 59.725 66.667 0.00 0.00 0.00 3.08
2283 2426 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
2289 2432 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2293 2436 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2294 2437 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2295 2438 8.568676 TTATTTTGATGACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 37.32 5.14
2296 2439 9.801873 ATTTATTTTGATGACAAGTATTTCCGG 57.198 29.630 0.00 0.00 37.32 5.14
2374 2517 9.834628 GTCCGAAAATACTTGTCATCAAAATTA 57.165 29.630 0.00 0.00 32.87 1.40
2375 2518 7.537306 CGTCCGAAAATACTTGTCATCAAAATT 59.463 33.333 0.00 0.00 32.87 1.82
2376 2519 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2377 2520 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2378 2521 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2379 2522 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2380 2523 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2381 2524 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2383 2526 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2390 2533 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2396 2539 0.179936 AGTACTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
2397 2540 3.567478 TTAGTACTACTCCCTCCGTCC 57.433 52.381 0.91 0.00 0.00 4.79
2560 2858 3.003480 CGAGGGCCTAAATAGCATAAGC 58.997 50.000 5.73 0.00 42.56 3.09
2598 3415 8.251750 TGACTACAAAATGGACGAAGAAATAG 57.748 34.615 0.00 0.00 0.00 1.73
2608 3425 4.455533 TGCAGTGATGACTACAAAATGGAC 59.544 41.667 0.00 0.00 0.00 4.02
2624 3441 2.936919 ATTGTTGAGTCCTGCAGTGA 57.063 45.000 13.81 6.89 0.00 3.41
2689 3512 7.012138 GCATGGATATAATATGAGCAGGAACAG 59.988 40.741 0.00 0.00 0.00 3.16
2811 3634 3.192001 ACTCGTGACTAACCGCTAATTCA 59.808 43.478 0.00 0.00 0.00 2.57
2833 3657 7.295322 ACAAGAACTATGCTATGCTAGATCA 57.705 36.000 0.00 0.00 0.00 2.92
2836 3660 6.778069 ACCTACAAGAACTATGCTATGCTAGA 59.222 38.462 0.00 0.00 0.00 2.43
2839 3663 5.878406 ACCTACAAGAACTATGCTATGCT 57.122 39.130 0.00 0.00 0.00 3.79
2840 3664 5.175856 CGAACCTACAAGAACTATGCTATGC 59.824 44.000 0.00 0.00 0.00 3.14
2841 3665 5.175856 GCGAACCTACAAGAACTATGCTATG 59.824 44.000 0.00 0.00 0.00 2.23
2842 3666 5.069251 AGCGAACCTACAAGAACTATGCTAT 59.931 40.000 0.00 0.00 0.00 2.97
2843 3667 4.401519 AGCGAACCTACAAGAACTATGCTA 59.598 41.667 0.00 0.00 0.00 3.49
2886 3710 0.958876 GGTCGAAGCCGTGGGATTTT 60.959 55.000 0.00 0.00 28.48 1.82
2944 3768 0.178767 CCTTCATCTCGCCATCACCA 59.821 55.000 0.00 0.00 0.00 4.17
2947 3771 1.832219 CCCCTTCATCTCGCCATCA 59.168 57.895 0.00 0.00 0.00 3.07
2949 3773 2.512896 GCCCCTTCATCTCGCCAT 59.487 61.111 0.00 0.00 0.00 4.40
3013 3838 4.363999 CTCCTAACCATACGAAGAAGCAG 58.636 47.826 0.00 0.00 0.00 4.24
3042 3867 1.963515 ACCAAAGTGCCAGATTTCCAC 59.036 47.619 0.00 0.00 0.00 4.02
3043 3868 2.158475 AGACCAAAGTGCCAGATTTCCA 60.158 45.455 0.00 0.00 0.00 3.53
3055 3880 4.703575 TGTCATAGTACGCTAGACCAAAGT 59.296 41.667 0.00 0.00 30.93 2.66
3066 3891 4.607955 TCTACATGCTTGTCATAGTACGC 58.392 43.478 8.74 0.00 37.28 4.42
3067 3892 8.797266 TTATTCTACATGCTTGTCATAGTACG 57.203 34.615 8.74 0.00 37.28 3.67
3071 3896 9.425893 CGTTTTTATTCTACATGCTTGTCATAG 57.574 33.333 8.74 1.71 37.28 2.23
3072 3897 8.941977 ACGTTTTTATTCTACATGCTTGTCATA 58.058 29.630 8.74 2.42 37.28 2.15
3073 3898 7.816640 ACGTTTTTATTCTACATGCTTGTCAT 58.183 30.769 8.74 3.32 37.28 3.06
3074 3899 7.197071 ACGTTTTTATTCTACATGCTTGTCA 57.803 32.000 8.74 0.00 37.28 3.58
3075 3900 9.769093 ATAACGTTTTTATTCTACATGCTTGTC 57.231 29.630 5.91 0.00 37.28 3.18
3076 3901 9.769093 GATAACGTTTTTATTCTACATGCTTGT 57.231 29.630 5.91 10.40 39.98 3.16
3077 3902 9.988350 AGATAACGTTTTTATTCTACATGCTTG 57.012 29.630 5.91 0.00 0.00 4.01
3086 3911 8.520351 CCCTGGAAAAGATAACGTTTTTATTCT 58.480 33.333 5.91 0.00 0.00 2.40
3087 3912 7.274904 GCCCTGGAAAAGATAACGTTTTTATTC 59.725 37.037 5.91 5.62 0.00 1.75
3088 3913 7.094631 GCCCTGGAAAAGATAACGTTTTTATT 58.905 34.615 5.91 0.00 0.00 1.40
3089 3914 6.624204 CGCCCTGGAAAAGATAACGTTTTTAT 60.624 38.462 5.91 0.00 0.00 1.40
3090 3915 5.335035 CGCCCTGGAAAAGATAACGTTTTTA 60.335 40.000 5.91 0.00 0.00 1.52
3091 3916 4.557895 CGCCCTGGAAAAGATAACGTTTTT 60.558 41.667 5.91 0.00 0.00 1.94
3092 3917 3.057806 CGCCCTGGAAAAGATAACGTTTT 60.058 43.478 5.91 0.00 0.00 2.43
3093 3918 2.486592 CGCCCTGGAAAAGATAACGTTT 59.513 45.455 5.91 0.00 0.00 3.60
3094 3919 2.081462 CGCCCTGGAAAAGATAACGTT 58.919 47.619 5.88 5.88 0.00 3.99
3095 3920 1.276989 TCGCCCTGGAAAAGATAACGT 59.723 47.619 0.00 0.00 0.00 3.99
3096 3921 1.664151 GTCGCCCTGGAAAAGATAACG 59.336 52.381 0.00 0.00 0.00 3.18
3097 3922 2.706890 TGTCGCCCTGGAAAAGATAAC 58.293 47.619 0.00 0.00 0.00 1.89
3098 3923 3.426787 TTGTCGCCCTGGAAAAGATAA 57.573 42.857 0.00 0.00 0.00 1.75
3099 3924 3.644966 ATTGTCGCCCTGGAAAAGATA 57.355 42.857 0.00 0.00 0.00 1.98
3100 3925 2.514458 ATTGTCGCCCTGGAAAAGAT 57.486 45.000 0.00 0.00 0.00 2.40
3101 3926 2.286365 AATTGTCGCCCTGGAAAAGA 57.714 45.000 0.00 0.00 0.00 2.52
3102 3927 2.676076 CAAATTGTCGCCCTGGAAAAG 58.324 47.619 0.00 0.00 0.00 2.27
3103 3928 1.270041 GCAAATTGTCGCCCTGGAAAA 60.270 47.619 0.00 0.00 0.00 2.29
3104 3929 0.316841 GCAAATTGTCGCCCTGGAAA 59.683 50.000 0.00 0.00 0.00 3.13
3105 3930 0.539438 AGCAAATTGTCGCCCTGGAA 60.539 50.000 0.00 0.00 0.00 3.53
3106 3931 1.074775 AGCAAATTGTCGCCCTGGA 59.925 52.632 0.00 0.00 0.00 3.86
3107 3932 3.685435 AGCAAATTGTCGCCCTGG 58.315 55.556 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.