Multiple sequence alignment - TraesCS3A01G384300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G384300 chr3A 100.000 5746 0 0 1 5746 633912059 633906314 0.000000e+00 10611.0
1 TraesCS3A01G384300 chr3D 95.171 3562 137 21 1610 5159 492004008 492000470 0.000000e+00 5592.0
2 TraesCS3A01G384300 chr3D 93.984 881 29 8 727 1605 492004912 492004054 0.000000e+00 1312.0
3 TraesCS3A01G384300 chr3D 88.500 400 19 15 5367 5746 491997008 491996616 5.250000e-125 459.0
4 TraesCS3A01G384300 chr3D 92.829 251 18 0 5175 5425 491997256 491997006 1.180000e-96 364.0
5 TraesCS3A01G384300 chr3B 95.113 2967 95 30 835 3775 652971994 652969052 0.000000e+00 4630.0
6 TraesCS3A01G384300 chr3B 89.010 1192 65 32 4585 5746 652967895 652966740 0.000000e+00 1415.0
7 TraesCS3A01G384300 chr3B 96.512 602 21 0 3955 4556 652968494 652967893 0.000000e+00 996.0
8 TraesCS3A01G384300 chr3B 92.361 288 19 2 3490 3775 652968496 652968782 1.930000e-109 407.0
9 TraesCS3A01G384300 chr1B 79.785 559 91 15 2853 3401 488126760 488127306 2.510000e-103 387.0
10 TraesCS3A01G384300 chr1D 79.606 559 92 15 2853 3401 364724699 364725245 1.170000e-101 381.0
11 TraesCS3A01G384300 chr1A 79.643 560 91 16 2853 3401 463812391 463812938 1.170000e-101 381.0
12 TraesCS3A01G384300 chr4B 100.000 28 0 0 167 194 638425230 638425257 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G384300 chr3A 633906314 633912059 5745 True 10611.00 10611 100.000 1 5746 1 chr3A.!!$R1 5745
1 TraesCS3A01G384300 chr3D 491996616 492004912 8296 True 1931.75 5592 92.621 727 5746 4 chr3D.!!$R1 5019
2 TraesCS3A01G384300 chr3B 652966740 652971994 5254 True 2347.00 4630 93.545 835 5746 3 chr3B.!!$R1 4911
3 TraesCS3A01G384300 chr1B 488126760 488127306 546 False 387.00 387 79.785 2853 3401 1 chr1B.!!$F1 548
4 TraesCS3A01G384300 chr1D 364724699 364725245 546 False 381.00 381 79.606 2853 3401 1 chr1D.!!$F1 548
5 TraesCS3A01G384300 chr1A 463812391 463812938 547 False 381.00 381 79.643 2853 3401 1 chr1A.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 465 0.109132 GCCCTTCCAAATGCTTCACG 60.109 55.000 0.0 0.0 0.00 4.35 F
1515 1525 0.105039 AGAAGGGATTCGATGGCGTC 59.895 55.000 0.0 0.0 38.98 5.19 F
1662 1713 1.694150 TGGAGTCTTCACCAGTTCCTG 59.306 52.381 0.0 0.0 31.98 3.86 F
2084 2147 1.802960 CTATGTGATCATTGGAGGCGC 59.197 52.381 0.0 0.0 35.70 6.53 F
2439 2507 2.234908 AGACACTGACACATCTAAGCCC 59.765 50.000 0.0 0.0 0.00 5.19 F
3870 3947 0.687354 TGAGACCAAGTCCAGCCTTC 59.313 55.000 0.0 0.0 32.18 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1887 0.031585 CGAGTTGGTCGTCAAGGACA 59.968 55.000 5.34 0.00 44.20 4.02 R
2439 2507 2.075338 GTGAGCCTCTTTCTTCTGCAG 58.925 52.381 7.63 7.63 0.00 4.41 R
2505 2573 2.554032 AGTCTCGTTGGCAATTCTTTGG 59.446 45.455 1.92 0.00 33.22 3.28 R
3186 3257 3.318313 TCTCCTTCCAGGAAGAACACTT 58.682 45.455 28.56 0.00 45.28 3.16 R
4097 4552 0.327591 TGGCATGCCATGTGTCACTA 59.672 50.000 35.59 8.81 41.89 2.74 R
5578 9321 0.035317 GCCACTGATCCATCGCCATA 59.965 55.000 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 9.746711 TGTTCACAAATTTTAAAAACATTCACG 57.253 25.926 4.44 0.00 0.00 4.35
100 101 9.959775 GTTCACAAATTTTAAAAACATTCACGA 57.040 25.926 4.44 0.00 0.00 4.35
102 103 9.959775 TCACAAATTTTAAAAACATTCACGAAC 57.040 25.926 4.44 0.00 0.00 3.95
103 104 9.965748 CACAAATTTTAAAAACATTCACGAACT 57.034 25.926 4.44 0.00 0.00 3.01
112 113 8.472683 AAAAACATTCACGAACTCAAAAATCA 57.527 26.923 0.00 0.00 0.00 2.57
113 114 8.647143 AAAACATTCACGAACTCAAAAATCAT 57.353 26.923 0.00 0.00 0.00 2.45
114 115 8.647143 AAACATTCACGAACTCAAAAATCATT 57.353 26.923 0.00 0.00 0.00 2.57
115 116 7.627585 ACATTCACGAACTCAAAAATCATTG 57.372 32.000 0.00 0.00 0.00 2.82
116 117 6.144402 ACATTCACGAACTCAAAAATCATTGC 59.856 34.615 0.00 0.00 0.00 3.56
117 118 5.180367 TCACGAACTCAAAAATCATTGCA 57.820 34.783 0.00 0.00 0.00 4.08
118 119 5.214417 TCACGAACTCAAAAATCATTGCAG 58.786 37.500 0.00 0.00 0.00 4.41
119 120 5.008514 TCACGAACTCAAAAATCATTGCAGA 59.991 36.000 0.00 0.00 0.00 4.26
120 121 5.860182 CACGAACTCAAAAATCATTGCAGAT 59.140 36.000 0.00 0.00 0.00 2.90
121 122 6.364165 CACGAACTCAAAAATCATTGCAGATT 59.636 34.615 0.00 0.00 39.81 2.40
123 124 8.081633 ACGAACTCAAAAATCATTGCAGATTTA 58.918 29.630 12.74 0.09 44.96 1.40
124 125 8.914654 CGAACTCAAAAATCATTGCAGATTTAA 58.085 29.630 12.74 3.78 44.96 1.52
186 187 8.379161 TCTTTGTGAATTTTCAAATTGTTCACG 58.621 29.630 16.81 7.80 38.64 4.35
187 188 7.818493 TTGTGAATTTTCAAATTGTTCACGA 57.182 28.000 16.81 14.01 38.64 4.35
188 189 7.818493 TGTGAATTTTCAAATTGTTCACGAA 57.182 28.000 16.81 4.08 38.64 3.85
189 190 8.417780 TGTGAATTTTCAAATTGTTCACGAAT 57.582 26.923 16.81 0.33 38.64 3.34
190 191 8.877779 TGTGAATTTTCAAATTGTTCACGAATT 58.122 25.926 16.81 6.66 38.64 2.17
199 200 9.743057 TCAAATTGTTCACGAATTAAAGAATGT 57.257 25.926 0.00 0.00 0.00 2.71
202 203 8.874745 ATTGTTCACGAATTAAAGAATGTACG 57.125 30.769 0.00 0.00 0.00 3.67
203 204 6.301108 TGTTCACGAATTAAAGAATGTACGC 58.699 36.000 0.00 0.00 0.00 4.42
204 205 5.121071 TCACGAATTAAAGAATGTACGCG 57.879 39.130 3.53 3.53 0.00 6.01
205 206 4.858140 TCACGAATTAAAGAATGTACGCGA 59.142 37.500 15.93 0.00 0.00 5.87
206 207 5.345472 TCACGAATTAAAGAATGTACGCGAA 59.655 36.000 15.93 0.00 0.00 4.70
207 208 6.035220 TCACGAATTAAAGAATGTACGCGAAT 59.965 34.615 15.93 0.00 0.00 3.34
208 209 6.681178 CACGAATTAAAGAATGTACGCGAATT 59.319 34.615 15.93 9.78 0.00 2.17
209 210 7.215568 CACGAATTAAAGAATGTACGCGAATTT 59.784 33.333 15.93 0.00 0.00 1.82
210 211 7.747357 ACGAATTAAAGAATGTACGCGAATTTT 59.253 29.630 15.93 1.98 0.00 1.82
211 212 8.036432 CGAATTAAAGAATGTACGCGAATTTTG 58.964 33.333 15.93 0.00 0.00 2.44
212 213 8.958175 AATTAAAGAATGTACGCGAATTTTGA 57.042 26.923 15.93 0.84 0.00 2.69
213 214 8.601243 ATTAAAGAATGTACGCGAATTTTGAG 57.399 30.769 15.93 0.00 0.00 3.02
214 215 5.856126 AAGAATGTACGCGAATTTTGAGA 57.144 34.783 15.93 0.00 0.00 3.27
215 216 5.856126 AGAATGTACGCGAATTTTGAGAA 57.144 34.783 15.93 0.00 0.00 2.87
216 217 6.236017 AGAATGTACGCGAATTTTGAGAAA 57.764 33.333 15.93 0.00 0.00 2.52
217 218 6.077838 AGAATGTACGCGAATTTTGAGAAAC 58.922 36.000 15.93 0.00 0.00 2.78
218 219 4.797693 TGTACGCGAATTTTGAGAAACA 57.202 36.364 15.93 0.00 0.00 2.83
219 220 5.158101 TGTACGCGAATTTTGAGAAACAA 57.842 34.783 15.93 0.00 36.65 2.83
220 221 5.201910 TGTACGCGAATTTTGAGAAACAAG 58.798 37.500 15.93 0.00 39.77 3.16
221 222 3.042887 ACGCGAATTTTGAGAAACAAGC 58.957 40.909 15.93 0.00 39.77 4.01
222 223 3.243068 ACGCGAATTTTGAGAAACAAGCT 60.243 39.130 15.93 0.00 39.77 3.74
223 224 4.024387 ACGCGAATTTTGAGAAACAAGCTA 60.024 37.500 15.93 0.00 39.77 3.32
224 225 5.088739 CGCGAATTTTGAGAAACAAGCTAT 58.911 37.500 0.00 0.00 39.77 2.97
225 226 6.128391 ACGCGAATTTTGAGAAACAAGCTATA 60.128 34.615 15.93 0.00 39.77 1.31
226 227 6.409185 CGCGAATTTTGAGAAACAAGCTATAG 59.591 38.462 0.00 0.00 39.77 1.31
227 228 7.244192 GCGAATTTTGAGAAACAAGCTATAGT 58.756 34.615 0.84 0.00 39.77 2.12
228 229 7.750903 GCGAATTTTGAGAAACAAGCTATAGTT 59.249 33.333 0.84 0.00 39.77 2.24
229 230 9.612620 CGAATTTTGAGAAACAAGCTATAGTTT 57.387 29.630 10.51 10.51 40.38 2.66
265 266 9.171701 CCATTAATTCAAAAACAAATGCTTGTG 57.828 29.630 0.00 0.00 45.25 3.33
266 267 9.932699 CATTAATTCAAAAACAAATGCTTGTGA 57.067 25.926 0.00 0.00 45.25 3.58
270 271 9.857957 AATTCAAAAACAAATGCTTGTGAATTT 57.142 22.222 16.47 6.60 45.25 1.82
272 273 8.037382 TCAAAAACAAATGCTTGTGAATTTGA 57.963 26.923 14.31 16.30 47.00 2.69
273 274 8.509690 TCAAAAACAAATGCTTGTGAATTTGAA 58.490 25.926 14.31 8.02 47.00 2.69
274 275 9.125906 CAAAAACAAATGCTTGTGAATTTGAAA 57.874 25.926 14.31 0.00 47.00 2.69
275 276 9.688592 AAAAACAAATGCTTGTGAATTTGAAAA 57.311 22.222 14.31 0.00 47.00 2.29
276 277 9.688592 AAAACAAATGCTTGTGAATTTGAAAAA 57.311 22.222 14.31 0.00 47.00 1.94
355 356 9.082313 AGGAAATGTTTGTGAATTTCTCTATGT 57.918 29.630 7.76 0.00 40.86 2.29
356 357 9.696917 GGAAATGTTTGTGAATTTCTCTATGTT 57.303 29.630 7.76 0.00 40.86 2.71
360 361 9.850628 ATGTTTGTGAATTTCTCTATGTTCATG 57.149 29.630 0.00 0.00 33.65 3.07
361 362 9.065798 TGTTTGTGAATTTCTCTATGTTCATGA 57.934 29.630 0.00 0.00 33.65 3.07
362 363 9.897744 GTTTGTGAATTTCTCTATGTTCATGAA 57.102 29.630 3.38 3.38 33.65 2.57
373 374 9.246670 TCTCTATGTTCATGAATTTGGAAATGT 57.753 29.630 12.12 0.00 0.00 2.71
374 375 9.865321 CTCTATGTTCATGAATTTGGAAATGTT 57.135 29.630 12.12 0.00 0.00 2.71
379 380 9.993454 TGTTCATGAATTTGGAAATGTTATCAA 57.007 25.926 12.12 0.00 0.00 2.57
389 390 9.844257 TTTGGAAATGTTATCAAATTTGACCTT 57.156 25.926 22.71 10.25 40.49 3.50
390 391 9.844257 TTGGAAATGTTATCAAATTTGACCTTT 57.156 25.926 22.71 14.99 40.49 3.11
391 392 9.844257 TGGAAATGTTATCAAATTTGACCTTTT 57.156 25.926 22.71 19.81 40.49 2.27
394 395 9.949174 AAATGTTATCAAATTTGACCTTTTTGC 57.051 25.926 22.71 8.25 40.49 3.68
395 396 8.674263 ATGTTATCAAATTTGACCTTTTTGCA 57.326 26.923 22.71 12.81 40.49 4.08
396 397 8.140677 TGTTATCAAATTTGACCTTTTTGCAG 57.859 30.769 22.71 0.00 40.49 4.41
397 398 7.984050 TGTTATCAAATTTGACCTTTTTGCAGA 59.016 29.630 22.71 0.00 40.49 4.26
398 399 8.825745 GTTATCAAATTTGACCTTTTTGCAGAA 58.174 29.630 22.71 0.00 40.49 3.02
399 400 7.862512 ATCAAATTTGACCTTTTTGCAGAAA 57.137 28.000 22.71 2.07 40.49 2.52
400 401 7.862512 TCAAATTTGACCTTTTTGCAGAAAT 57.137 28.000 16.91 0.00 31.88 2.17
401 402 8.278729 TCAAATTTGACCTTTTTGCAGAAATT 57.721 26.923 16.91 0.00 31.88 1.82
402 403 8.738106 TCAAATTTGACCTTTTTGCAGAAATTT 58.262 25.926 16.91 0.00 33.81 1.82
405 406 9.612066 AATTTGACCTTTTTGCAGAAATTTAGA 57.388 25.926 2.48 0.00 0.00 2.10
406 407 9.612066 ATTTGACCTTTTTGCAGAAATTTAGAA 57.388 25.926 2.48 0.00 0.00 2.10
407 408 9.442047 TTTGACCTTTTTGCAGAAATTTAGAAA 57.558 25.926 2.48 0.00 0.00 2.52
408 409 9.442047 TTGACCTTTTTGCAGAAATTTAGAAAA 57.558 25.926 2.48 0.00 0.00 2.29
409 410 9.612066 TGACCTTTTTGCAGAAATTTAGAAAAT 57.388 25.926 2.48 0.00 0.00 1.82
435 436 7.541122 TTAACAAATTCGAAAAAGGTTTGGG 57.459 32.000 19.73 2.87 34.87 4.12
436 437 5.346181 ACAAATTCGAAAAAGGTTTGGGA 57.654 34.783 19.73 0.00 34.87 4.37
437 438 5.735766 ACAAATTCGAAAAAGGTTTGGGAA 58.264 33.333 19.73 0.00 34.87 3.97
438 439 5.583061 ACAAATTCGAAAAAGGTTTGGGAAC 59.417 36.000 19.73 0.00 34.87 3.62
439 440 5.607939 AATTCGAAAAAGGTTTGGGAACT 57.392 34.783 0.00 0.00 36.03 3.01
440 441 5.607939 ATTCGAAAAAGGTTTGGGAACTT 57.392 34.783 0.00 0.00 36.03 2.66
441 442 5.408880 TTCGAAAAAGGTTTGGGAACTTT 57.591 34.783 0.00 0.00 36.73 2.66
442 443 6.527057 TTCGAAAAAGGTTTGGGAACTTTA 57.473 33.333 0.00 0.00 34.39 1.85
443 444 6.718522 TCGAAAAAGGTTTGGGAACTTTAT 57.281 33.333 0.00 0.00 34.39 1.40
444 445 6.508777 TCGAAAAAGGTTTGGGAACTTTATG 58.491 36.000 0.00 0.00 34.39 1.90
445 446 5.694458 CGAAAAAGGTTTGGGAACTTTATGG 59.306 40.000 0.00 0.00 34.39 2.74
446 447 4.617253 AAAGGTTTGGGAACTTTATGGC 57.383 40.909 0.00 0.00 34.39 4.40
447 448 2.536066 AGGTTTGGGAACTTTATGGCC 58.464 47.619 0.00 0.00 36.03 5.36
448 449 1.553248 GGTTTGGGAACTTTATGGCCC 59.447 52.381 0.00 0.00 41.08 5.80
449 450 2.536066 GTTTGGGAACTTTATGGCCCT 58.464 47.619 0.00 0.00 41.28 5.19
450 451 2.903784 GTTTGGGAACTTTATGGCCCTT 59.096 45.455 0.00 0.00 41.28 3.95
451 452 2.525105 TGGGAACTTTATGGCCCTTC 57.475 50.000 0.00 0.00 41.28 3.46
452 453 1.006639 TGGGAACTTTATGGCCCTTCC 59.993 52.381 0.00 0.56 41.28 3.46
460 461 4.973174 TGGCCCTTCCAAATGCTT 57.027 50.000 0.00 0.00 43.21 3.91
461 462 2.669878 TGGCCCTTCCAAATGCTTC 58.330 52.632 0.00 0.00 43.21 3.86
462 463 0.178938 TGGCCCTTCCAAATGCTTCA 60.179 50.000 0.00 0.00 43.21 3.02
463 464 0.247460 GGCCCTTCCAAATGCTTCAC 59.753 55.000 0.00 0.00 34.01 3.18
464 465 0.109132 GCCCTTCCAAATGCTTCACG 60.109 55.000 0.00 0.00 0.00 4.35
465 466 0.527565 CCCTTCCAAATGCTTCACGG 59.472 55.000 0.00 0.00 0.00 4.94
466 467 1.247567 CCTTCCAAATGCTTCACGGT 58.752 50.000 0.00 0.00 0.00 4.83
467 468 1.200020 CCTTCCAAATGCTTCACGGTC 59.800 52.381 0.00 0.00 0.00 4.79
468 469 2.154462 CTTCCAAATGCTTCACGGTCT 58.846 47.619 0.00 0.00 0.00 3.85
469 470 3.334691 CTTCCAAATGCTTCACGGTCTA 58.665 45.455 0.00 0.00 0.00 2.59
470 471 2.695359 TCCAAATGCTTCACGGTCTAC 58.305 47.619 0.00 0.00 0.00 2.59
471 472 2.037902 TCCAAATGCTTCACGGTCTACA 59.962 45.455 0.00 0.00 0.00 2.74
472 473 2.159627 CCAAATGCTTCACGGTCTACAC 59.840 50.000 0.00 0.00 0.00 2.90
473 474 1.710013 AATGCTTCACGGTCTACACG 58.290 50.000 0.00 0.00 37.36 4.49
474 475 0.601558 ATGCTTCACGGTCTACACGT 59.398 50.000 0.00 0.00 46.82 4.49
475 476 0.386476 TGCTTCACGGTCTACACGTT 59.614 50.000 0.00 0.00 43.58 3.99
476 477 1.058404 GCTTCACGGTCTACACGTTC 58.942 55.000 0.00 0.00 43.58 3.95
477 478 1.335689 GCTTCACGGTCTACACGTTCT 60.336 52.381 0.00 0.00 43.58 3.01
478 479 2.095567 GCTTCACGGTCTACACGTTCTA 60.096 50.000 0.00 0.00 43.58 2.10
479 480 3.610114 GCTTCACGGTCTACACGTTCTAA 60.610 47.826 0.00 0.00 43.58 2.10
480 481 3.818961 TCACGGTCTACACGTTCTAAG 57.181 47.619 0.00 0.00 43.58 2.18
481 482 2.095567 TCACGGTCTACACGTTCTAAGC 60.096 50.000 0.00 0.00 43.58 3.09
482 483 1.881973 ACGGTCTACACGTTCTAAGCA 59.118 47.619 0.00 0.00 42.70 3.91
483 484 2.490903 ACGGTCTACACGTTCTAAGCAT 59.509 45.455 0.00 0.00 42.70 3.79
484 485 2.852413 CGGTCTACACGTTCTAAGCATG 59.148 50.000 0.00 0.00 0.00 4.06
485 486 3.672511 CGGTCTACACGTTCTAAGCATGT 60.673 47.826 0.00 0.00 0.00 3.21
486 487 3.858238 GGTCTACACGTTCTAAGCATGTC 59.142 47.826 0.00 0.00 0.00 3.06
487 488 4.482386 GTCTACACGTTCTAAGCATGTCA 58.518 43.478 0.00 0.00 0.00 3.58
488 489 4.323868 GTCTACACGTTCTAAGCATGTCAC 59.676 45.833 0.00 0.00 0.00 3.67
489 490 3.106242 ACACGTTCTAAGCATGTCACA 57.894 42.857 0.00 0.00 0.00 3.58
490 491 3.664107 ACACGTTCTAAGCATGTCACAT 58.336 40.909 0.00 0.00 0.00 3.21
491 492 4.816392 ACACGTTCTAAGCATGTCACATA 58.184 39.130 0.00 0.00 0.00 2.29
492 493 5.234752 ACACGTTCTAAGCATGTCACATAA 58.765 37.500 0.00 0.00 0.00 1.90
493 494 5.699001 ACACGTTCTAAGCATGTCACATAAA 59.301 36.000 0.00 0.00 0.00 1.40
494 495 6.015504 CACGTTCTAAGCATGTCACATAAAC 58.984 40.000 0.00 0.00 0.00 2.01
495 496 5.699001 ACGTTCTAAGCATGTCACATAAACA 59.301 36.000 0.00 0.00 0.00 2.83
496 497 6.203915 ACGTTCTAAGCATGTCACATAAACAA 59.796 34.615 0.00 0.00 0.00 2.83
497 498 7.075121 CGTTCTAAGCATGTCACATAAACAAA 58.925 34.615 0.00 0.00 0.00 2.83
498 499 7.589587 CGTTCTAAGCATGTCACATAAACAAAA 59.410 33.333 0.00 0.00 0.00 2.44
499 500 9.410556 GTTCTAAGCATGTCACATAAACAAAAT 57.589 29.630 0.00 0.00 0.00 1.82
504 505 9.762933 AAGCATGTCACATAAACAAAATAAACT 57.237 25.926 0.00 0.00 0.00 2.66
505 506 9.195411 AGCATGTCACATAAACAAAATAAACTG 57.805 29.630 0.00 0.00 0.00 3.16
506 507 9.190858 GCATGTCACATAAACAAAATAAACTGA 57.809 29.630 0.00 0.00 0.00 3.41
512 513 9.796062 CACATAAACAAAATAAACTGACATTGC 57.204 29.630 0.00 0.00 0.00 3.56
513 514 9.539825 ACATAAACAAAATAAACTGACATTGCA 57.460 25.926 0.00 0.00 0.00 4.08
517 518 9.553418 AAACAAAATAAACTGACATTGCAAAAC 57.447 25.926 1.71 0.00 0.00 2.43
518 519 8.261492 ACAAAATAAACTGACATTGCAAAACA 57.739 26.923 1.71 3.31 0.00 2.83
519 520 8.725148 ACAAAATAAACTGACATTGCAAAACAA 58.275 25.926 1.71 0.00 44.01 2.83
536 537 8.447833 TGCAAAACAATAAAGAAGTAGATACCG 58.552 33.333 0.00 0.00 0.00 4.02
537 538 8.448615 GCAAAACAATAAAGAAGTAGATACCGT 58.551 33.333 0.00 0.00 0.00 4.83
538 539 9.755064 CAAAACAATAAAGAAGTAGATACCGTG 57.245 33.333 0.00 0.00 0.00 4.94
539 540 7.535489 AACAATAAAGAAGTAGATACCGTGC 57.465 36.000 0.00 0.00 0.00 5.34
540 541 6.875076 ACAATAAAGAAGTAGATACCGTGCT 58.125 36.000 0.00 0.00 0.00 4.40
541 542 7.328737 ACAATAAAGAAGTAGATACCGTGCTT 58.671 34.615 0.00 0.00 0.00 3.91
542 543 7.822822 ACAATAAAGAAGTAGATACCGTGCTTT 59.177 33.333 0.00 0.00 0.00 3.51
543 544 7.772332 ATAAAGAAGTAGATACCGTGCTTTG 57.228 36.000 0.00 0.00 0.00 2.77
544 545 5.401531 AAGAAGTAGATACCGTGCTTTGA 57.598 39.130 0.00 0.00 0.00 2.69
545 546 5.599999 AGAAGTAGATACCGTGCTTTGAT 57.400 39.130 0.00 0.00 0.00 2.57
546 547 5.352284 AGAAGTAGATACCGTGCTTTGATG 58.648 41.667 0.00 0.00 0.00 3.07
547 548 5.127194 AGAAGTAGATACCGTGCTTTGATGA 59.873 40.000 0.00 0.00 0.00 2.92
548 549 4.683832 AGTAGATACCGTGCTTTGATGAC 58.316 43.478 0.00 0.00 0.00 3.06
549 550 2.906354 AGATACCGTGCTTTGATGACC 58.094 47.619 0.00 0.00 0.00 4.02
550 551 1.940613 GATACCGTGCTTTGATGACCC 59.059 52.381 0.00 0.00 0.00 4.46
551 552 0.390603 TACCGTGCTTTGATGACCCG 60.391 55.000 0.00 0.00 0.00 5.28
552 553 1.375396 CCGTGCTTTGATGACCCGA 60.375 57.895 0.00 0.00 0.00 5.14
553 554 1.361668 CCGTGCTTTGATGACCCGAG 61.362 60.000 0.00 0.00 0.00 4.63
554 555 0.389817 CGTGCTTTGATGACCCGAGA 60.390 55.000 0.00 0.00 0.00 4.04
555 556 1.808411 GTGCTTTGATGACCCGAGAA 58.192 50.000 0.00 0.00 0.00 2.87
556 557 1.734465 GTGCTTTGATGACCCGAGAAG 59.266 52.381 0.00 0.00 0.00 2.85
557 558 1.623311 TGCTTTGATGACCCGAGAAGA 59.377 47.619 0.00 0.00 0.00 2.87
558 559 2.038426 TGCTTTGATGACCCGAGAAGAA 59.962 45.455 0.00 0.00 0.00 2.52
559 560 3.074412 GCTTTGATGACCCGAGAAGAAA 58.926 45.455 0.00 0.00 0.00 2.52
560 561 3.120165 GCTTTGATGACCCGAGAAGAAAC 60.120 47.826 0.00 0.00 0.00 2.78
561 562 3.762407 TTGATGACCCGAGAAGAAACA 57.238 42.857 0.00 0.00 0.00 2.83
562 563 3.762407 TGATGACCCGAGAAGAAACAA 57.238 42.857 0.00 0.00 0.00 2.83
563 564 4.286297 TGATGACCCGAGAAGAAACAAT 57.714 40.909 0.00 0.00 0.00 2.71
564 565 4.002982 TGATGACCCGAGAAGAAACAATG 58.997 43.478 0.00 0.00 0.00 2.82
565 566 3.485463 TGACCCGAGAAGAAACAATGT 57.515 42.857 0.00 0.00 0.00 2.71
566 567 3.138304 TGACCCGAGAAGAAACAATGTG 58.862 45.455 0.00 0.00 0.00 3.21
567 568 1.880027 ACCCGAGAAGAAACAATGTGC 59.120 47.619 0.00 0.00 0.00 4.57
568 569 1.879380 CCCGAGAAGAAACAATGTGCA 59.121 47.619 0.00 0.00 0.00 4.57
569 570 2.489329 CCCGAGAAGAAACAATGTGCAT 59.511 45.455 0.00 0.00 0.00 3.96
570 571 3.495193 CCGAGAAGAAACAATGTGCATG 58.505 45.455 0.00 0.00 0.00 4.06
571 572 3.189080 CCGAGAAGAAACAATGTGCATGA 59.811 43.478 0.00 0.00 0.00 3.07
572 573 4.320421 CCGAGAAGAAACAATGTGCATGAA 60.320 41.667 0.00 0.00 0.00 2.57
573 574 4.614284 CGAGAAGAAACAATGTGCATGAAC 59.386 41.667 0.00 0.00 0.00 3.18
574 575 5.518848 AGAAGAAACAATGTGCATGAACA 57.481 34.783 9.52 9.52 0.00 3.18
575 576 6.092955 AGAAGAAACAATGTGCATGAACAT 57.907 33.333 14.02 14.02 42.62 2.71
576 577 7.218228 AGAAGAAACAATGTGCATGAACATA 57.782 32.000 19.97 0.00 39.89 2.29
577 578 7.833786 AGAAGAAACAATGTGCATGAACATAT 58.166 30.769 19.97 8.61 39.89 1.78
578 579 7.758076 AGAAGAAACAATGTGCATGAACATATG 59.242 33.333 19.97 19.59 39.89 1.78
591 592 6.855836 CATGAACATATGCAAAACACCTAGT 58.144 36.000 1.58 0.00 0.00 2.57
592 593 7.984391 CATGAACATATGCAAAACACCTAGTA 58.016 34.615 1.58 0.00 0.00 1.82
593 594 8.623903 CATGAACATATGCAAAACACCTAGTAT 58.376 33.333 1.58 0.00 0.00 2.12
594 595 7.984391 TGAACATATGCAAAACACCTAGTATG 58.016 34.615 1.58 0.00 0.00 2.39
595 596 6.377327 ACATATGCAAAACACCTAGTATGC 57.623 37.500 1.58 0.00 41.21 3.14
601 602 6.794374 TGCAAAACACCTAGTATGCATTATG 58.206 36.000 3.54 0.00 43.82 1.90
602 603 6.183360 TGCAAAACACCTAGTATGCATTATGG 60.183 38.462 3.54 5.35 43.82 2.74
603 604 6.735694 GCAAAACACCTAGTATGCATTATGGG 60.736 42.308 3.54 8.12 40.78 4.00
604 605 5.904984 AACACCTAGTATGCATTATGGGA 57.095 39.130 16.86 0.00 0.00 4.37
605 606 5.489792 ACACCTAGTATGCATTATGGGAG 57.510 43.478 16.86 12.48 0.00 4.30
606 607 4.907875 ACACCTAGTATGCATTATGGGAGT 59.092 41.667 16.86 12.99 0.00 3.85
607 608 6.082031 ACACCTAGTATGCATTATGGGAGTA 58.918 40.000 16.86 0.84 0.00 2.59
608 609 6.730977 ACACCTAGTATGCATTATGGGAGTAT 59.269 38.462 16.86 0.00 0.00 2.12
609 610 7.899172 ACACCTAGTATGCATTATGGGAGTATA 59.101 37.037 16.86 0.00 0.00 1.47
610 611 8.928448 CACCTAGTATGCATTATGGGAGTATAT 58.072 37.037 16.86 0.00 0.00 0.86
618 619 9.803507 ATGCATTATGGGAGTATATATCAATGG 57.196 33.333 0.00 0.00 0.00 3.16
619 620 7.720957 TGCATTATGGGAGTATATATCAATGGC 59.279 37.037 0.00 0.00 0.00 4.40
620 621 7.095060 GCATTATGGGAGTATATATCAATGGCG 60.095 40.741 0.00 0.00 0.00 5.69
621 622 4.753516 TGGGAGTATATATCAATGGCGG 57.246 45.455 0.00 0.00 0.00 6.13
622 623 4.101114 TGGGAGTATATATCAATGGCGGT 58.899 43.478 0.00 0.00 0.00 5.68
623 624 4.534500 TGGGAGTATATATCAATGGCGGTT 59.466 41.667 0.00 0.00 0.00 4.44
624 625 4.876107 GGGAGTATATATCAATGGCGGTTG 59.124 45.833 0.00 0.00 0.00 3.77
625 626 5.488341 GGAGTATATATCAATGGCGGTTGT 58.512 41.667 0.00 0.00 0.00 3.32
626 627 5.581085 GGAGTATATATCAATGGCGGTTGTC 59.419 44.000 0.00 0.00 0.00 3.18
627 628 5.168569 AGTATATATCAATGGCGGTTGTCG 58.831 41.667 0.00 0.00 42.76 4.35
628 629 2.613026 ATATCAATGGCGGTTGTCGA 57.387 45.000 2.94 0.00 42.43 4.20
629 630 2.388310 TATCAATGGCGGTTGTCGAA 57.612 45.000 0.00 0.00 42.43 3.71
630 631 1.086696 ATCAATGGCGGTTGTCGAAG 58.913 50.000 0.00 0.00 42.43 3.79
631 632 0.250124 TCAATGGCGGTTGTCGAAGT 60.250 50.000 0.00 0.00 42.43 3.01
632 633 0.591170 CAATGGCGGTTGTCGAAGTT 59.409 50.000 0.00 0.00 42.43 2.66
633 634 0.872388 AATGGCGGTTGTCGAAGTTC 59.128 50.000 0.00 0.00 42.43 3.01
634 635 0.250124 ATGGCGGTTGTCGAAGTTCA 60.250 50.000 3.32 0.00 42.43 3.18
635 636 0.878523 TGGCGGTTGTCGAAGTTCAG 60.879 55.000 3.32 0.00 42.43 3.02
636 637 0.599204 GGCGGTTGTCGAAGTTCAGA 60.599 55.000 3.32 0.00 42.43 3.27
637 638 1.214367 GCGGTTGTCGAAGTTCAGAA 58.786 50.000 3.32 0.00 42.43 3.02
638 639 1.595794 GCGGTTGTCGAAGTTCAGAAA 59.404 47.619 3.32 0.00 42.43 2.52
639 640 2.223377 GCGGTTGTCGAAGTTCAGAAAT 59.777 45.455 3.32 0.00 42.43 2.17
640 641 3.303791 GCGGTTGTCGAAGTTCAGAAATT 60.304 43.478 3.32 0.00 42.43 1.82
641 642 4.211389 CGGTTGTCGAAGTTCAGAAATTG 58.789 43.478 0.00 0.00 42.43 2.32
642 643 3.975035 GGTTGTCGAAGTTCAGAAATTGC 59.025 43.478 0.00 0.00 0.00 3.56
643 644 4.261197 GGTTGTCGAAGTTCAGAAATTGCT 60.261 41.667 0.00 0.00 0.00 3.91
644 645 5.049680 GGTTGTCGAAGTTCAGAAATTGCTA 60.050 40.000 0.00 0.00 0.00 3.49
645 646 6.427150 GTTGTCGAAGTTCAGAAATTGCTAA 58.573 36.000 0.00 0.00 0.00 3.09
646 647 5.985781 TGTCGAAGTTCAGAAATTGCTAAC 58.014 37.500 0.00 0.00 0.00 2.34
647 648 5.758296 TGTCGAAGTTCAGAAATTGCTAACT 59.242 36.000 0.00 0.00 31.94 2.24
648 649 6.074005 GTCGAAGTTCAGAAATTGCTAACTG 58.926 40.000 0.00 0.00 31.09 3.16
649 650 5.989168 TCGAAGTTCAGAAATTGCTAACTGA 59.011 36.000 0.00 0.00 37.56 3.41
650 651 6.073765 TCGAAGTTCAGAAATTGCTAACTGAC 60.074 38.462 0.00 6.32 38.77 3.51
651 652 5.948992 AGTTCAGAAATTGCTAACTGACC 57.051 39.130 0.00 0.00 38.77 4.02
652 653 5.376625 AGTTCAGAAATTGCTAACTGACCA 58.623 37.500 0.00 0.00 38.77 4.02
653 654 5.239525 AGTTCAGAAATTGCTAACTGACCAC 59.760 40.000 0.00 0.00 38.77 4.16
654 655 3.745975 TCAGAAATTGCTAACTGACCACG 59.254 43.478 0.00 0.00 35.01 4.94
655 656 3.498397 CAGAAATTGCTAACTGACCACGT 59.502 43.478 0.00 0.00 32.90 4.49
656 657 4.024048 CAGAAATTGCTAACTGACCACGTT 60.024 41.667 0.00 0.00 32.90 3.99
657 658 4.578928 AGAAATTGCTAACTGACCACGTTT 59.421 37.500 0.00 0.00 0.00 3.60
658 659 4.483476 AATTGCTAACTGACCACGTTTC 57.517 40.909 0.00 0.00 0.00 2.78
659 660 2.605837 TGCTAACTGACCACGTTTCA 57.394 45.000 0.00 0.00 0.00 2.69
660 661 3.120321 TGCTAACTGACCACGTTTCAT 57.880 42.857 0.00 0.00 0.00 2.57
661 662 2.805671 TGCTAACTGACCACGTTTCATG 59.194 45.455 0.00 0.00 0.00 3.07
662 663 2.159627 GCTAACTGACCACGTTTCATGG 59.840 50.000 0.00 0.00 43.43 3.66
663 664 2.631160 AACTGACCACGTTTCATGGA 57.369 45.000 0.00 0.00 39.87 3.41
664 665 1.878953 ACTGACCACGTTTCATGGAC 58.121 50.000 0.00 0.00 39.87 4.02
665 666 1.156736 CTGACCACGTTTCATGGACC 58.843 55.000 0.00 0.00 39.87 4.46
666 667 0.470341 TGACCACGTTTCATGGACCA 59.530 50.000 0.00 0.00 39.87 4.02
667 668 1.134068 TGACCACGTTTCATGGACCAA 60.134 47.619 0.00 0.00 39.87 3.67
668 669 1.265905 GACCACGTTTCATGGACCAAC 59.734 52.381 0.00 0.00 39.87 3.77
669 670 0.596082 CCACGTTTCATGGACCAACC 59.404 55.000 0.00 0.00 39.87 3.77
677 678 2.598467 TGGACCAACCAAACGGCT 59.402 55.556 0.00 0.00 46.75 5.52
678 679 1.527380 TGGACCAACCAAACGGCTC 60.527 57.895 0.00 0.00 46.75 4.70
679 680 1.527380 GGACCAACCAAACGGCTCA 60.527 57.895 0.00 0.00 38.79 4.26
680 681 1.515521 GGACCAACCAAACGGCTCAG 61.516 60.000 0.00 0.00 38.79 3.35
681 682 1.515521 GACCAACCAAACGGCTCAGG 61.516 60.000 0.00 0.00 0.00 3.86
682 683 2.644992 CAACCAAACGGCTCAGGC 59.355 61.111 0.00 0.00 37.82 4.85
693 694 3.264574 GCTCAGGCCCAATAACACA 57.735 52.632 0.00 0.00 0.00 3.72
694 695 1.767759 GCTCAGGCCCAATAACACAT 58.232 50.000 0.00 0.00 0.00 3.21
695 696 1.406539 GCTCAGGCCCAATAACACATG 59.593 52.381 0.00 0.00 0.00 3.21
696 697 2.726821 CTCAGGCCCAATAACACATGT 58.273 47.619 0.00 0.00 0.00 3.21
697 698 2.424601 CTCAGGCCCAATAACACATGTG 59.575 50.000 24.25 24.25 0.00 3.21
698 699 1.135024 CAGGCCCAATAACACATGTGC 60.135 52.381 25.68 8.84 0.00 4.57
699 700 0.179140 GGCCCAATAACACATGTGCG 60.179 55.000 25.68 9.01 0.00 5.34
700 701 0.525761 GCCCAATAACACATGTGCGT 59.474 50.000 25.68 16.00 0.00 5.24
701 702 1.067915 GCCCAATAACACATGTGCGTT 60.068 47.619 25.68 15.49 0.00 4.84
702 703 2.609244 GCCCAATAACACATGTGCGTTT 60.609 45.455 25.68 14.77 0.00 3.60
703 704 2.985809 CCCAATAACACATGTGCGTTTG 59.014 45.455 25.68 22.29 0.00 2.93
704 705 2.408032 CCAATAACACATGTGCGTTTGC 59.592 45.455 25.68 0.00 43.20 3.68
714 715 4.922791 GCGTTTGCAGTTCAGTCC 57.077 55.556 0.00 0.00 42.15 3.85
715 716 2.021722 GCGTTTGCAGTTCAGTCCA 58.978 52.632 0.00 0.00 42.15 4.02
716 717 0.593128 GCGTTTGCAGTTCAGTCCAT 59.407 50.000 0.00 0.00 42.15 3.41
717 718 1.001378 GCGTTTGCAGTTCAGTCCATT 60.001 47.619 0.00 0.00 42.15 3.16
718 719 2.543653 GCGTTTGCAGTTCAGTCCATTT 60.544 45.455 0.00 0.00 42.15 2.32
719 720 3.300009 CGTTTGCAGTTCAGTCCATTTC 58.700 45.455 0.00 0.00 0.00 2.17
720 721 3.003689 CGTTTGCAGTTCAGTCCATTTCT 59.996 43.478 0.00 0.00 0.00 2.52
721 722 4.213270 CGTTTGCAGTTCAGTCCATTTCTA 59.787 41.667 0.00 0.00 0.00 2.10
722 723 5.106555 CGTTTGCAGTTCAGTCCATTTCTAT 60.107 40.000 0.00 0.00 0.00 1.98
723 724 6.317857 GTTTGCAGTTCAGTCCATTTCTATC 58.682 40.000 0.00 0.00 0.00 2.08
724 725 4.517285 TGCAGTTCAGTCCATTTCTATCC 58.483 43.478 0.00 0.00 0.00 2.59
725 726 4.019411 TGCAGTTCAGTCCATTTCTATCCA 60.019 41.667 0.00 0.00 0.00 3.41
732 733 5.366477 TCAGTCCATTTCTATCCATGTGCTA 59.634 40.000 0.00 0.00 0.00 3.49
737 738 6.767902 TCCATTTCTATCCATGTGCTAAAGTC 59.232 38.462 0.00 0.00 0.00 3.01
754 755 3.054503 CAGTCAGGCCTGCACAGC 61.055 66.667 28.91 14.33 0.00 4.40
801 802 1.067060 AGCAGGACCGAAAACAAAAGC 59.933 47.619 0.00 0.00 0.00 3.51
802 803 1.753956 CAGGACCGAAAACAAAAGCG 58.246 50.000 0.00 0.00 0.00 4.68
805 806 3.521417 CCGAAAACAAAAGCGGCG 58.479 55.556 0.51 0.51 37.08 6.46
806 807 1.009449 CCGAAAACAAAAGCGGCGA 60.009 52.632 12.98 0.00 37.08 5.54
807 808 0.996727 CCGAAAACAAAAGCGGCGAG 60.997 55.000 12.98 0.00 37.08 5.03
897 899 3.036084 GTGGACCACTCGTGTGCG 61.036 66.667 17.84 8.08 42.54 5.34
919 921 1.376037 CGCCAGTTCTCCTTCCACC 60.376 63.158 0.00 0.00 0.00 4.61
921 923 1.492993 GCCAGTTCTCCTTCCACCCT 61.493 60.000 0.00 0.00 0.00 4.34
922 924 0.615850 CCAGTTCTCCTTCCACCCTC 59.384 60.000 0.00 0.00 0.00 4.30
924 926 0.494095 AGTTCTCCTTCCACCCTCCT 59.506 55.000 0.00 0.00 0.00 3.69
929 931 1.541368 CCTTCCACCCTCCTTCCCA 60.541 63.158 0.00 0.00 0.00 4.37
1065 1069 3.063084 GAGACCGACCTCCGCTGT 61.063 66.667 0.00 0.00 36.84 4.40
1406 1416 0.740868 CGCAATTCGCCAGAGAGGAA 60.741 55.000 0.00 0.00 41.22 3.36
1515 1525 0.105039 AGAAGGGATTCGATGGCGTC 59.895 55.000 0.00 0.00 38.98 5.19
1592 1602 4.748102 TGGATTGTTCGTACTGTTTGTCTC 59.252 41.667 0.00 0.00 0.00 3.36
1607 1617 9.826574 ACTGTTTGTCTCTGTTTTATTGTAGTA 57.173 29.630 0.00 0.00 0.00 1.82
1662 1713 1.694150 TGGAGTCTTCACCAGTTCCTG 59.306 52.381 0.00 0.00 31.98 3.86
1675 1726 2.886523 CAGTTCCTGTGAATTGCCAGAA 59.113 45.455 3.13 0.00 32.41 3.02
1709 1760 8.519526 GGTCACATGGAAAATACATTTCTGTTA 58.480 33.333 0.00 0.00 45.57 2.41
1731 1782 8.028354 TGTTAACATATGTTGCCTGAGAAAATG 58.972 33.333 27.62 0.00 38.90 2.32
1735 1786 2.571212 TGTTGCCTGAGAAAATGTCGT 58.429 42.857 0.00 0.00 0.00 4.34
1752 1803 3.248266 GTCGTCACATACCACCACTTAC 58.752 50.000 0.00 0.00 0.00 2.34
1753 1804 2.892215 TCGTCACATACCACCACTTACA 59.108 45.455 0.00 0.00 0.00 2.41
1769 1820 5.048782 CCACTTACATGTTAGCTCAAGCAAA 60.049 40.000 11.67 0.00 45.16 3.68
1778 1829 5.163723 TGTTAGCTCAAGCAAACTGATATGC 60.164 40.000 4.59 0.00 45.16 3.14
1794 1845 5.933617 TGATATGCTTAGACCTGCATTCTT 58.066 37.500 5.78 0.00 46.29 2.52
1796 1847 3.423539 TGCTTAGACCTGCATTCTTGT 57.576 42.857 3.45 0.00 33.94 3.16
1800 1851 6.283694 TGCTTAGACCTGCATTCTTGTATAG 58.716 40.000 3.45 0.00 33.94 1.31
1817 1871 6.510879 TGTATAGAGTTGGTGTACTGTGAG 57.489 41.667 0.00 0.00 0.00 3.51
1828 1882 2.807967 TGTACTGTGAGTGCAAGCAATC 59.192 45.455 14.85 14.85 37.88 2.67
1829 1883 1.971481 ACTGTGAGTGCAAGCAATCA 58.029 45.000 19.68 19.68 46.64 2.57
1842 1897 3.051081 AGCAATCACTCTGTCCTTGAC 57.949 47.619 0.00 0.00 0.00 3.18
1892 1947 6.935208 GTGGTCACTCCTCAGTTTTAGTAATT 59.065 38.462 0.00 0.00 37.07 1.40
1899 1962 6.817765 CCTCAGTTTTAGTAATTGAGGCAA 57.182 37.500 18.24 0.00 45.81 4.52
1905 1968 5.957842 TTTAGTAATTGAGGCAACACTGG 57.042 39.130 0.00 0.00 41.41 4.00
1941 2004 3.129988 GCTCCAAAATCTACAGCAGCAAT 59.870 43.478 0.00 0.00 0.00 3.56
1944 2007 4.951715 TCCAAAATCTACAGCAGCAATGAT 59.048 37.500 0.00 0.00 0.00 2.45
1954 2017 5.500234 ACAGCAGCAATGATTTTAGTCCTA 58.500 37.500 0.00 0.00 0.00 2.94
2016 2079 7.137490 TCAGATATGCTGTCAAAAACTCAAG 57.863 36.000 0.00 0.00 45.14 3.02
2083 2146 2.804527 CACTATGTGATCATTGGAGGCG 59.195 50.000 0.00 0.00 35.23 5.52
2084 2147 1.802960 CTATGTGATCATTGGAGGCGC 59.197 52.381 0.00 0.00 35.70 6.53
2164 2227 3.630312 TGTCTGTTACTTTCTGGGTTTGC 59.370 43.478 0.00 0.00 0.00 3.68
2165 2228 3.883489 GTCTGTTACTTTCTGGGTTTGCT 59.117 43.478 0.00 0.00 0.00 3.91
2166 2229 4.338400 GTCTGTTACTTTCTGGGTTTGCTT 59.662 41.667 0.00 0.00 0.00 3.91
2167 2230 4.953579 TCTGTTACTTTCTGGGTTTGCTTT 59.046 37.500 0.00 0.00 0.00 3.51
2168 2231 6.038936 GTCTGTTACTTTCTGGGTTTGCTTTA 59.961 38.462 0.00 0.00 0.00 1.85
2243 2311 7.765695 TGATTTCCTCACTTAAAATTCTGCT 57.234 32.000 0.00 0.00 0.00 4.24
2383 2451 6.155475 AGAACCATGCTGAGAGTATAACTC 57.845 41.667 0.00 0.00 45.38 3.01
2439 2507 2.234908 AGACACTGACACATCTAAGCCC 59.765 50.000 0.00 0.00 0.00 5.19
2505 2573 4.120589 GTGTCGGGAAATCTACATTCCTC 58.879 47.826 5.38 0.00 44.71 3.71
3186 3257 6.546034 TCACTACATCCAGAAATACGAGATCA 59.454 38.462 0.00 0.00 0.00 2.92
3297 3371 7.645058 AAGGAGTTATTTGGTCACATATTGG 57.355 36.000 0.00 0.00 0.00 3.16
3436 3511 9.899226 AGAGCATTGTTTCAGTTTTCTATTTAC 57.101 29.630 0.00 0.00 0.00 2.01
3531 3606 8.556194 GCGTATTGATCTACATGTTCCAAAATA 58.444 33.333 2.30 1.54 0.00 1.40
3539 3614 8.777865 TCTACATGTTCCAAAATAGAACTCAG 57.222 34.615 2.30 0.00 43.28 3.35
3595 3670 6.208599 CCAAATAGGAAAGGTTAAGCTGTGAA 59.791 38.462 8.16 0.00 41.22 3.18
3609 3684 3.134804 AGCTGTGAAGTGTAAACTGACCT 59.865 43.478 0.00 0.00 0.00 3.85
3701 3778 7.400439 ACCTATGTGACACTAGTTCTGTACTA 58.600 38.462 7.20 0.00 38.33 1.82
3720 3797 7.772166 TGTACTATATATCATGCCTGCTACAC 58.228 38.462 0.00 0.00 0.00 2.90
3723 3800 2.916702 TATCATGCCTGCTACACTGG 57.083 50.000 0.00 0.00 40.30 4.00
3728 3805 1.275666 TGCCTGCTACACTGGTACAT 58.724 50.000 0.00 0.00 38.20 2.29
3811 3888 4.660303 ACAATCTGGATGGCTTATAGGTGA 59.340 41.667 0.00 0.00 0.00 4.02
3870 3947 0.687354 TGAGACCAAGTCCAGCCTTC 59.313 55.000 0.00 0.00 32.18 3.46
3919 3996 5.640357 ACACTTGTAAGAAAAAGTCGTCACA 59.360 36.000 0.00 0.00 34.41 3.58
3920 3997 6.183360 ACACTTGTAAGAAAAAGTCGTCACAG 60.183 38.462 0.00 0.00 34.41 3.66
3941 4018 6.642131 CACAGGTTCAATTTGTTATCCTTGTG 59.358 38.462 0.00 0.00 0.00 3.33
4039 4494 8.046708 ACAGTAGCATGTATTTGTGGAGATTTA 58.953 33.333 0.00 0.00 0.00 1.40
4060 4515 9.221775 GATTTAATAAAATGCCACGTCTTAGTG 57.778 33.333 0.00 0.00 37.36 2.74
4263 4718 3.073650 ACTTCCTTCAAATCTCTGCACCT 59.926 43.478 0.00 0.00 0.00 4.00
4370 4825 1.085091 CTGCTGAGACAAGTGATGGC 58.915 55.000 0.00 0.00 37.30 4.40
4497 4952 1.668101 GGCGATGTCGTCCTTCCTCT 61.668 60.000 4.20 0.00 42.22 3.69
4514 4969 1.280421 CTCTCAAAGTAGGGGCAAGCT 59.720 52.381 0.00 0.00 0.00 3.74
4646 5101 4.184629 GACGACCTTCTGAATGCTGTATT 58.815 43.478 0.00 0.00 0.00 1.89
4671 5126 5.568392 TCTCGAAACCTAGGTACTCTTTCT 58.432 41.667 16.67 0.00 41.75 2.52
4686 5141 7.499895 GGTACTCTTTCTATCTGTAGTGCTAGT 59.500 40.741 0.00 0.00 0.00 2.57
4702 5157 6.820335 AGTGCTAGTCAATGCTGTATGATAA 58.180 36.000 0.00 0.00 0.00 1.75
4715 5170 8.123639 TGCTGTATGATAAGTATCTAACTCCC 57.876 38.462 0.31 0.00 37.50 4.30
4719 5174 9.078990 TGTATGATAAGTATCTAACTCCCTGTG 57.921 37.037 0.31 0.00 37.50 3.66
4731 5186 2.375174 ACTCCCTGTGCCTGTAAATGAA 59.625 45.455 0.00 0.00 0.00 2.57
4751 5206 4.284490 TGAAGATCTGACTACTTGCTTGGT 59.716 41.667 0.00 0.00 0.00 3.67
4775 5230 7.919621 GGTGTCGGTGCCTATTAGTATATTATC 59.080 40.741 0.00 0.00 0.00 1.75
4776 5231 8.684520 GTGTCGGTGCCTATTAGTATATTATCT 58.315 37.037 0.00 0.00 0.00 1.98
4804 5259 5.824624 AGTATGGAACCATATGCTGTTTCTG 59.175 40.000 15.28 0.00 40.49 3.02
4822 5278 6.315393 TGTTTCTGTCTACTGTTTCCTTGTTC 59.685 38.462 0.00 0.00 0.00 3.18
4825 5281 6.049149 TCTGTCTACTGTTTCCTTGTTCTTG 58.951 40.000 0.00 0.00 0.00 3.02
4946 5411 9.764363 GTGTTCCCTTTTCTTTCTTATTTGATT 57.236 29.630 0.00 0.00 0.00 2.57
4985 5450 4.128925 GATGTTGTCTACTCCAGCATCA 57.871 45.455 10.93 0.00 44.84 3.07
5085 5555 3.263261 GAAATTCGAGGAGAGAACCCAC 58.737 50.000 0.00 0.00 0.00 4.61
5118 5588 4.756084 AGCACATGTTAGAAGAGCAAAC 57.244 40.909 0.00 0.00 0.00 2.93
5119 5589 4.136796 AGCACATGTTAGAAGAGCAAACA 58.863 39.130 0.00 0.00 37.51 2.83
5190 8859 9.647797 TTTGTAAGTATTGTCATACGTTGAGAT 57.352 29.630 0.00 0.00 40.42 2.75
5230 8900 0.240411 GGCAGCTGAAAAGAGCAGTG 59.760 55.000 20.43 0.00 41.83 3.66
5235 8905 1.598924 GCTGAAAAGAGCAGTGCACAC 60.599 52.381 21.04 10.88 38.95 3.82
5247 8917 3.058450 CAGTGCACACTCTTCTTCTCAG 58.942 50.000 21.04 0.00 40.20 3.35
5326 9004 2.795110 GCTGTTGCCTTGGTGCCAA 61.795 57.895 3.43 3.43 0.00 4.52
5343 9021 2.673326 GCCAAACCTACGTAGAGACACC 60.673 54.545 24.15 4.53 0.00 4.16
5403 9081 3.223423 ACAGTCGCAAGTCTACATCTG 57.777 47.619 0.00 0.00 33.42 2.90
5418 9155 4.457834 ACATCTGGTAGCTTGTACAGAC 57.542 45.455 10.28 0.00 42.14 3.51
5459 9196 3.827898 GGCGACCGTCCCTCTCAG 61.828 72.222 0.00 0.00 0.00 3.35
5527 9264 3.499737 CACTCCCGATTGCCACGC 61.500 66.667 0.00 0.00 0.00 5.34
5534 9271 2.010670 CGATTGCCACGCGGAATTA 58.989 52.632 12.47 0.00 0.00 1.40
5535 9272 0.586319 CGATTGCCACGCGGAATTAT 59.414 50.000 12.47 0.00 0.00 1.28
5537 9274 2.650608 GATTGCCACGCGGAATTATTC 58.349 47.619 12.47 0.00 0.00 1.75
5538 9275 1.454201 TTGCCACGCGGAATTATTCA 58.546 45.000 12.47 0.00 0.00 2.57
5539 9276 1.674359 TGCCACGCGGAATTATTCAT 58.326 45.000 12.47 0.00 0.00 2.57
5540 9277 1.601903 TGCCACGCGGAATTATTCATC 59.398 47.619 12.47 0.00 0.00 2.92
5541 9278 1.873591 GCCACGCGGAATTATTCATCT 59.126 47.619 12.47 0.00 0.00 2.90
5542 9279 3.064207 GCCACGCGGAATTATTCATCTA 58.936 45.455 12.47 0.00 0.00 1.98
5543 9280 3.120649 GCCACGCGGAATTATTCATCTAC 60.121 47.826 12.47 0.00 0.00 2.59
5544 9281 4.307432 CCACGCGGAATTATTCATCTACT 58.693 43.478 12.47 0.00 0.00 2.57
5545 9282 4.150627 CCACGCGGAATTATTCATCTACTG 59.849 45.833 12.47 0.00 0.00 2.74
5546 9283 4.745125 CACGCGGAATTATTCATCTACTGT 59.255 41.667 12.47 0.00 0.00 3.55
5547 9284 5.918576 CACGCGGAATTATTCATCTACTGTA 59.081 40.000 12.47 0.00 0.00 2.74
5548 9285 6.586463 CACGCGGAATTATTCATCTACTGTAT 59.414 38.462 12.47 0.00 0.00 2.29
5549 9286 7.753580 CACGCGGAATTATTCATCTACTGTATA 59.246 37.037 12.47 0.00 0.00 1.47
5561 9304 6.544197 TCATCTACTGTATATAGCTAGGCTGC 59.456 42.308 0.00 0.00 40.10 5.25
5562 9305 6.068461 TCTACTGTATATAGCTAGGCTGCT 57.932 41.667 14.29 14.29 46.11 4.24
5578 9321 3.018149 GCTGCTATACCTATACGGAGCT 58.982 50.000 0.00 0.00 32.73 4.09
5642 9403 1.432514 CATGGACGTGGACAGTGAAG 58.567 55.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 9.746711 CGTGAATGTTTTTAAAATTTGTGAACA 57.253 25.926 0.55 1.86 0.00 3.18
74 75 9.959775 TCGTGAATGTTTTTAAAATTTGTGAAC 57.040 25.926 0.55 0.00 0.00 3.18
76 77 9.959775 GTTCGTGAATGTTTTTAAAATTTGTGA 57.040 25.926 0.55 0.00 0.00 3.58
77 78 9.965748 AGTTCGTGAATGTTTTTAAAATTTGTG 57.034 25.926 0.55 0.00 0.00 3.33
86 87 9.574458 TGATTTTTGAGTTCGTGAATGTTTTTA 57.426 25.926 0.00 0.00 0.00 1.52
87 88 8.472683 TGATTTTTGAGTTCGTGAATGTTTTT 57.527 26.923 0.00 0.00 0.00 1.94
88 89 8.647143 ATGATTTTTGAGTTCGTGAATGTTTT 57.353 26.923 0.00 0.00 0.00 2.43
89 90 8.542132 CAATGATTTTTGAGTTCGTGAATGTTT 58.458 29.630 0.00 0.00 0.00 2.83
90 91 7.306749 GCAATGATTTTTGAGTTCGTGAATGTT 60.307 33.333 0.00 0.00 0.00 2.71
91 92 6.144402 GCAATGATTTTTGAGTTCGTGAATGT 59.856 34.615 0.00 0.00 0.00 2.71
92 93 6.144241 TGCAATGATTTTTGAGTTCGTGAATG 59.856 34.615 0.00 0.00 0.00 2.67
93 94 6.215121 TGCAATGATTTTTGAGTTCGTGAAT 58.785 32.000 0.00 0.00 0.00 2.57
94 95 5.586339 TGCAATGATTTTTGAGTTCGTGAA 58.414 33.333 0.00 0.00 0.00 3.18
95 96 5.008514 TCTGCAATGATTTTTGAGTTCGTGA 59.991 36.000 0.00 0.00 0.00 4.35
96 97 5.214417 TCTGCAATGATTTTTGAGTTCGTG 58.786 37.500 0.00 0.00 0.00 4.35
97 98 5.437289 TCTGCAATGATTTTTGAGTTCGT 57.563 34.783 0.00 0.00 0.00 3.85
98 99 6.939551 AATCTGCAATGATTTTTGAGTTCG 57.060 33.333 0.00 0.00 33.33 3.95
160 161 8.379161 CGTGAACAATTTGAAAATTCACAAAGA 58.621 29.630 21.95 0.00 38.94 2.52
161 162 8.379161 TCGTGAACAATTTGAAAATTCACAAAG 58.621 29.630 21.95 12.55 38.94 2.77
162 163 8.244494 TCGTGAACAATTTGAAAATTCACAAA 57.756 26.923 21.95 10.77 36.52 2.83
163 164 7.818493 TCGTGAACAATTTGAAAATTCACAA 57.182 28.000 21.95 9.97 36.52 3.33
164 165 7.818493 TTCGTGAACAATTTGAAAATTCACA 57.182 28.000 21.95 12.72 36.52 3.58
173 174 9.743057 ACATTCTTTAATTCGTGAACAATTTGA 57.257 25.926 2.79 0.00 0.00 2.69
176 177 9.325150 CGTACATTCTTTAATTCGTGAACAATT 57.675 29.630 0.00 0.00 0.00 2.32
177 178 7.480542 GCGTACATTCTTTAATTCGTGAACAAT 59.519 33.333 0.00 0.00 0.00 2.71
178 179 6.793203 GCGTACATTCTTTAATTCGTGAACAA 59.207 34.615 0.00 0.00 0.00 2.83
179 180 6.301108 GCGTACATTCTTTAATTCGTGAACA 58.699 36.000 0.00 0.00 0.00 3.18
180 181 5.443763 CGCGTACATTCTTTAATTCGTGAAC 59.556 40.000 0.00 0.00 30.33 3.18
181 182 5.345472 TCGCGTACATTCTTTAATTCGTGAA 59.655 36.000 5.77 0.00 32.74 3.18
182 183 4.858140 TCGCGTACATTCTTTAATTCGTGA 59.142 37.500 5.77 0.00 32.98 4.35
183 184 5.121071 TCGCGTACATTCTTTAATTCGTG 57.879 39.130 5.77 0.00 0.00 4.35
184 185 5.766702 TTCGCGTACATTCTTTAATTCGT 57.233 34.783 5.77 0.00 0.00 3.85
185 186 7.644917 AAATTCGCGTACATTCTTTAATTCG 57.355 32.000 5.77 0.00 0.00 3.34
186 187 9.057365 TCAAAATTCGCGTACATTCTTTAATTC 57.943 29.630 5.77 0.00 0.00 2.17
187 188 8.958175 TCAAAATTCGCGTACATTCTTTAATT 57.042 26.923 5.77 0.00 0.00 1.40
188 189 8.447833 TCTCAAAATTCGCGTACATTCTTTAAT 58.552 29.630 5.77 0.00 0.00 1.40
189 190 7.798801 TCTCAAAATTCGCGTACATTCTTTAA 58.201 30.769 5.77 0.00 0.00 1.52
190 191 7.354025 TCTCAAAATTCGCGTACATTCTTTA 57.646 32.000 5.77 0.00 0.00 1.85
191 192 6.236017 TCTCAAAATTCGCGTACATTCTTT 57.764 33.333 5.77 0.00 0.00 2.52
192 193 5.856126 TCTCAAAATTCGCGTACATTCTT 57.144 34.783 5.77 0.00 0.00 2.52
193 194 5.856126 TTCTCAAAATTCGCGTACATTCT 57.144 34.783 5.77 0.00 0.00 2.40
194 195 5.849081 TGTTTCTCAAAATTCGCGTACATTC 59.151 36.000 5.77 0.00 0.00 2.67
195 196 5.753744 TGTTTCTCAAAATTCGCGTACATT 58.246 33.333 5.77 0.13 0.00 2.71
196 197 5.351233 TGTTTCTCAAAATTCGCGTACAT 57.649 34.783 5.77 0.00 0.00 2.29
197 198 4.797693 TGTTTCTCAAAATTCGCGTACA 57.202 36.364 5.77 0.00 0.00 2.90
198 199 4.086664 GCTTGTTTCTCAAAATTCGCGTAC 59.913 41.667 5.77 0.00 35.48 3.67
199 200 4.024387 AGCTTGTTTCTCAAAATTCGCGTA 60.024 37.500 5.77 0.00 35.48 4.42
200 201 3.042887 GCTTGTTTCTCAAAATTCGCGT 58.957 40.909 5.77 0.00 35.48 6.01
201 202 3.300009 AGCTTGTTTCTCAAAATTCGCG 58.700 40.909 0.00 0.00 35.48 5.87
202 203 7.244192 ACTATAGCTTGTTTCTCAAAATTCGC 58.756 34.615 0.00 0.00 35.48 4.70
203 204 9.612620 AAACTATAGCTTGTTTCTCAAAATTCG 57.387 29.630 0.00 0.00 35.48 3.34
238 239 9.118300 ACAAGCATTTGTTTTTGAATTAATGGA 57.882 25.926 0.00 0.00 45.01 3.41
239 240 9.171701 CACAAGCATTTGTTTTTGAATTAATGG 57.828 29.630 0.00 0.00 45.01 3.16
240 241 9.932699 TCACAAGCATTTGTTTTTGAATTAATG 57.067 25.926 0.00 0.00 45.01 1.90
244 245 9.857957 AAATTCACAAGCATTTGTTTTTGAATT 57.142 22.222 19.64 19.64 46.99 2.17
245 246 9.291664 CAAATTCACAAGCATTTGTTTTTGAAT 57.708 25.926 12.75 12.75 45.01 2.57
246 247 8.509690 TCAAATTCACAAGCATTTGTTTTTGAA 58.490 25.926 9.96 9.96 45.01 2.69
247 248 8.037382 TCAAATTCACAAGCATTTGTTTTTGA 57.963 26.923 12.51 12.51 45.01 2.69
248 249 8.670804 TTCAAATTCACAAGCATTTGTTTTTG 57.329 26.923 5.22 7.89 45.01 2.44
249 250 9.688592 TTTTCAAATTCACAAGCATTTGTTTTT 57.311 22.222 5.22 0.00 45.01 1.94
250 251 9.688592 TTTTTCAAATTCACAAGCATTTGTTTT 57.311 22.222 5.22 0.00 45.01 2.43
329 330 9.082313 ACATAGAGAAATTCACAAACATTTCCT 57.918 29.630 0.00 0.00 39.34 3.36
330 331 9.696917 AACATAGAGAAATTCACAAACATTTCC 57.303 29.630 0.00 0.00 39.34 3.13
334 335 9.850628 CATGAACATAGAGAAATTCACAAACAT 57.149 29.630 0.00 0.00 34.08 2.71
335 336 9.065798 TCATGAACATAGAGAAATTCACAAACA 57.934 29.630 0.00 0.00 34.08 2.83
336 337 9.897744 TTCATGAACATAGAGAAATTCACAAAC 57.102 29.630 3.38 0.00 34.08 2.93
347 348 9.246670 ACATTTCCAAATTCATGAACATAGAGA 57.753 29.630 11.07 2.00 0.00 3.10
348 349 9.865321 AACATTTCCAAATTCATGAACATAGAG 57.135 29.630 11.07 0.00 0.00 2.43
353 354 9.993454 TTGATAACATTTCCAAATTCATGAACA 57.007 25.926 11.07 0.00 0.00 3.18
363 364 9.844257 AAGGTCAAATTTGATAACATTTCCAAA 57.156 25.926 23.05 0.00 39.73 3.28
364 365 9.844257 AAAGGTCAAATTTGATAACATTTCCAA 57.156 25.926 23.05 0.00 39.73 3.53
365 366 9.844257 AAAAGGTCAAATTTGATAACATTTCCA 57.156 25.926 23.05 0.00 39.73 3.53
368 369 9.949174 GCAAAAAGGTCAAATTTGATAACATTT 57.051 25.926 23.05 17.03 39.73 2.32
369 370 9.118300 TGCAAAAAGGTCAAATTTGATAACATT 57.882 25.926 23.05 12.42 39.73 2.71
370 371 8.674263 TGCAAAAAGGTCAAATTTGATAACAT 57.326 26.923 23.05 6.97 39.73 2.71
371 372 7.984050 TCTGCAAAAAGGTCAAATTTGATAACA 59.016 29.630 23.05 11.95 39.73 2.41
372 373 8.364129 TCTGCAAAAAGGTCAAATTTGATAAC 57.636 30.769 23.05 15.96 39.73 1.89
373 374 8.954950 TTCTGCAAAAAGGTCAAATTTGATAA 57.045 26.923 23.05 0.00 39.73 1.75
374 375 8.954950 TTTCTGCAAAAAGGTCAAATTTGATA 57.045 26.923 23.05 0.00 39.73 2.15
375 376 7.862512 TTTCTGCAAAAAGGTCAAATTTGAT 57.137 28.000 23.05 6.32 39.73 2.57
376 377 7.862512 ATTTCTGCAAAAAGGTCAAATTTGA 57.137 28.000 16.91 16.91 36.41 2.69
377 378 8.914328 AAATTTCTGCAAAAAGGTCAAATTTG 57.086 26.923 12.15 12.15 33.08 2.32
379 380 9.612066 TCTAAATTTCTGCAAAAAGGTCAAATT 57.388 25.926 0.00 0.00 0.00 1.82
380 381 9.612066 TTCTAAATTTCTGCAAAAAGGTCAAAT 57.388 25.926 0.00 0.00 0.00 2.32
381 382 9.442047 TTTCTAAATTTCTGCAAAAAGGTCAAA 57.558 25.926 0.00 0.00 0.00 2.69
382 383 9.442047 TTTTCTAAATTTCTGCAAAAAGGTCAA 57.558 25.926 0.00 0.00 0.00 3.18
383 384 9.612066 ATTTTCTAAATTTCTGCAAAAAGGTCA 57.388 25.926 0.00 0.00 0.00 4.02
409 410 9.262358 CCCAAACCTTTTTCGAATTTGTTAATA 57.738 29.630 16.04 0.00 0.00 0.98
410 411 7.988028 TCCCAAACCTTTTTCGAATTTGTTAAT 59.012 29.630 16.04 0.00 0.00 1.40
411 412 7.328737 TCCCAAACCTTTTTCGAATTTGTTAA 58.671 30.769 16.04 0.00 0.00 2.01
412 413 6.875076 TCCCAAACCTTTTTCGAATTTGTTA 58.125 32.000 16.04 5.15 0.00 2.41
413 414 5.735766 TCCCAAACCTTTTTCGAATTTGTT 58.264 33.333 16.04 8.16 0.00 2.83
414 415 5.346181 TCCCAAACCTTTTTCGAATTTGT 57.654 34.783 16.04 3.28 0.00 2.83
415 416 5.815222 AGTTCCCAAACCTTTTTCGAATTTG 59.185 36.000 12.21 12.21 35.92 2.32
416 417 5.984725 AGTTCCCAAACCTTTTTCGAATTT 58.015 33.333 0.00 0.00 35.92 1.82
417 418 5.607939 AGTTCCCAAACCTTTTTCGAATT 57.392 34.783 0.00 0.00 35.92 2.17
418 419 5.607939 AAGTTCCCAAACCTTTTTCGAAT 57.392 34.783 0.00 0.00 35.92 3.34
419 420 5.408880 AAAGTTCCCAAACCTTTTTCGAA 57.591 34.783 0.00 0.00 35.92 3.71
420 421 6.461788 CCATAAAGTTCCCAAACCTTTTTCGA 60.462 38.462 0.00 0.00 35.92 3.71
421 422 5.694458 CCATAAAGTTCCCAAACCTTTTTCG 59.306 40.000 0.00 0.00 35.92 3.46
422 423 5.468746 GCCATAAAGTTCCCAAACCTTTTTC 59.531 40.000 0.00 0.00 35.92 2.29
423 424 5.373222 GCCATAAAGTTCCCAAACCTTTTT 58.627 37.500 0.00 0.00 35.92 1.94
424 425 4.202419 GGCCATAAAGTTCCCAAACCTTTT 60.202 41.667 0.00 0.00 35.92 2.27
425 426 3.326588 GGCCATAAAGTTCCCAAACCTTT 59.673 43.478 0.00 0.00 35.92 3.11
426 427 2.903784 GGCCATAAAGTTCCCAAACCTT 59.096 45.455 0.00 0.00 35.92 3.50
427 428 2.536066 GGCCATAAAGTTCCCAAACCT 58.464 47.619 0.00 0.00 35.92 3.50
428 429 1.553248 GGGCCATAAAGTTCCCAAACC 59.447 52.381 4.39 0.00 38.62 3.27
429 430 2.536066 AGGGCCATAAAGTTCCCAAAC 58.464 47.619 6.18 0.00 41.22 2.93
430 431 3.169908 GAAGGGCCATAAAGTTCCCAAA 58.830 45.455 6.18 0.00 41.22 3.28
431 432 2.558800 GGAAGGGCCATAAAGTTCCCAA 60.559 50.000 6.18 0.00 41.22 4.12
432 433 1.006639 GGAAGGGCCATAAAGTTCCCA 59.993 52.381 6.18 0.00 41.22 4.37
433 434 1.006639 TGGAAGGGCCATAAAGTTCCC 59.993 52.381 15.19 0.00 43.33 3.97
434 435 2.525105 TGGAAGGGCCATAAAGTTCC 57.475 50.000 6.18 9.79 43.33 3.62
444 445 0.247460 GTGAAGCATTTGGAAGGGCC 59.753 55.000 0.00 0.00 37.10 5.80
445 446 0.109132 CGTGAAGCATTTGGAAGGGC 60.109 55.000 0.00 0.00 0.00 5.19
446 447 0.527565 CCGTGAAGCATTTGGAAGGG 59.472 55.000 0.00 0.00 0.00 3.95
447 448 1.200020 GACCGTGAAGCATTTGGAAGG 59.800 52.381 0.00 0.00 0.00 3.46
448 449 2.154462 AGACCGTGAAGCATTTGGAAG 58.846 47.619 0.00 0.00 0.00 3.46
449 450 2.270352 AGACCGTGAAGCATTTGGAA 57.730 45.000 0.00 0.00 0.00 3.53
450 451 2.037902 TGTAGACCGTGAAGCATTTGGA 59.962 45.455 0.00 0.00 0.00 3.53
451 452 2.159627 GTGTAGACCGTGAAGCATTTGG 59.840 50.000 0.00 0.00 0.00 3.28
452 453 2.159841 CGTGTAGACCGTGAAGCATTTG 60.160 50.000 0.00 0.00 0.00 2.32
453 454 2.066262 CGTGTAGACCGTGAAGCATTT 58.934 47.619 0.00 0.00 0.00 2.32
454 455 1.000506 ACGTGTAGACCGTGAAGCATT 59.999 47.619 0.00 0.00 37.12 3.56
455 456 0.601558 ACGTGTAGACCGTGAAGCAT 59.398 50.000 0.00 0.00 37.12 3.79
456 457 0.386476 AACGTGTAGACCGTGAAGCA 59.614 50.000 0.00 0.00 38.77 3.91
457 458 1.058404 GAACGTGTAGACCGTGAAGC 58.942 55.000 0.00 0.00 38.77 3.86
458 459 2.701073 AGAACGTGTAGACCGTGAAG 57.299 50.000 0.00 0.00 38.77 3.02
459 460 3.610114 GCTTAGAACGTGTAGACCGTGAA 60.610 47.826 0.00 0.00 38.77 3.18
460 461 2.095567 GCTTAGAACGTGTAGACCGTGA 60.096 50.000 0.00 0.00 38.77 4.35
461 462 2.248487 GCTTAGAACGTGTAGACCGTG 58.752 52.381 0.00 0.00 38.77 4.94
462 463 1.881973 TGCTTAGAACGTGTAGACCGT 59.118 47.619 0.00 0.00 40.92 4.83
463 464 2.624316 TGCTTAGAACGTGTAGACCG 57.376 50.000 0.00 0.00 0.00 4.79
464 465 3.846360 ACATGCTTAGAACGTGTAGACC 58.154 45.455 0.00 0.00 35.53 3.85
465 466 4.323868 GTGACATGCTTAGAACGTGTAGAC 59.676 45.833 0.00 0.00 37.39 2.59
466 467 4.022676 TGTGACATGCTTAGAACGTGTAGA 60.023 41.667 0.00 0.00 37.39 2.59
467 468 4.234574 TGTGACATGCTTAGAACGTGTAG 58.765 43.478 0.00 0.00 37.39 2.74
468 469 4.245845 TGTGACATGCTTAGAACGTGTA 57.754 40.909 0.00 0.00 37.39 2.90
469 470 3.106242 TGTGACATGCTTAGAACGTGT 57.894 42.857 0.00 0.00 39.92 4.49
470 471 5.778161 TTATGTGACATGCTTAGAACGTG 57.222 39.130 8.61 0.00 0.00 4.49
471 472 5.699001 TGTTTATGTGACATGCTTAGAACGT 59.301 36.000 8.61 0.00 0.00 3.99
472 473 6.164408 TGTTTATGTGACATGCTTAGAACG 57.836 37.500 8.61 0.00 0.00 3.95
473 474 8.795786 TTTTGTTTATGTGACATGCTTAGAAC 57.204 30.769 8.61 4.53 0.00 3.01
478 479 9.762933 AGTTTATTTTGTTTATGTGACATGCTT 57.237 25.926 8.61 0.00 0.00 3.91
479 480 9.195411 CAGTTTATTTTGTTTATGTGACATGCT 57.805 29.630 8.61 0.00 0.00 3.79
480 481 9.190858 TCAGTTTATTTTGTTTATGTGACATGC 57.809 29.630 8.61 0.00 0.00 4.06
486 487 9.796062 GCAATGTCAGTTTATTTTGTTTATGTG 57.204 29.630 0.00 0.00 0.00 3.21
487 488 9.539825 TGCAATGTCAGTTTATTTTGTTTATGT 57.460 25.926 0.00 0.00 0.00 2.29
491 492 9.553418 GTTTTGCAATGTCAGTTTATTTTGTTT 57.447 25.926 0.00 0.00 0.00 2.83
492 493 8.725148 TGTTTTGCAATGTCAGTTTATTTTGTT 58.275 25.926 0.00 0.00 0.00 2.83
493 494 8.261492 TGTTTTGCAATGTCAGTTTATTTTGT 57.739 26.923 0.00 0.00 0.00 2.83
494 495 9.719279 ATTGTTTTGCAATGTCAGTTTATTTTG 57.281 25.926 0.00 0.00 45.35 2.44
499 500 9.809096 TCTTTATTGTTTTGCAATGTCAGTTTA 57.191 25.926 0.00 0.00 46.40 2.01
500 501 8.715191 TCTTTATTGTTTTGCAATGTCAGTTT 57.285 26.923 0.00 0.00 46.40 2.66
501 502 8.715191 TTCTTTATTGTTTTGCAATGTCAGTT 57.285 26.923 0.00 0.00 46.40 3.16
502 503 7.981225 ACTTCTTTATTGTTTTGCAATGTCAGT 59.019 29.630 0.00 0.00 46.40 3.41
503 504 8.356533 ACTTCTTTATTGTTTTGCAATGTCAG 57.643 30.769 0.00 0.00 46.40 3.51
504 505 9.462174 CTACTTCTTTATTGTTTTGCAATGTCA 57.538 29.630 0.00 0.00 46.40 3.58
505 506 9.677567 TCTACTTCTTTATTGTTTTGCAATGTC 57.322 29.630 0.00 0.00 46.40 3.06
510 511 8.447833 CGGTATCTACTTCTTTATTGTTTTGCA 58.552 33.333 0.00 0.00 0.00 4.08
511 512 8.448615 ACGGTATCTACTTCTTTATTGTTTTGC 58.551 33.333 0.00 0.00 0.00 3.68
512 513 9.755064 CACGGTATCTACTTCTTTATTGTTTTG 57.245 33.333 0.00 0.00 0.00 2.44
513 514 8.448615 GCACGGTATCTACTTCTTTATTGTTTT 58.551 33.333 0.00 0.00 0.00 2.43
514 515 7.822822 AGCACGGTATCTACTTCTTTATTGTTT 59.177 33.333 0.00 0.00 0.00 2.83
515 516 7.328737 AGCACGGTATCTACTTCTTTATTGTT 58.671 34.615 0.00 0.00 0.00 2.83
516 517 6.875076 AGCACGGTATCTACTTCTTTATTGT 58.125 36.000 0.00 0.00 0.00 2.71
517 518 7.772332 AAGCACGGTATCTACTTCTTTATTG 57.228 36.000 0.00 0.00 0.00 1.90
518 519 8.038944 TCAAAGCACGGTATCTACTTCTTTATT 58.961 33.333 0.00 0.00 0.00 1.40
519 520 7.553334 TCAAAGCACGGTATCTACTTCTTTAT 58.447 34.615 0.00 0.00 0.00 1.40
520 521 6.927416 TCAAAGCACGGTATCTACTTCTTTA 58.073 36.000 0.00 0.00 0.00 1.85
521 522 5.790593 TCAAAGCACGGTATCTACTTCTTT 58.209 37.500 0.00 0.00 0.00 2.52
522 523 5.401531 TCAAAGCACGGTATCTACTTCTT 57.598 39.130 0.00 0.00 0.00 2.52
523 524 5.127194 TCATCAAAGCACGGTATCTACTTCT 59.873 40.000 0.00 0.00 0.00 2.85
524 525 5.232414 GTCATCAAAGCACGGTATCTACTTC 59.768 44.000 0.00 0.00 0.00 3.01
525 526 5.109903 GTCATCAAAGCACGGTATCTACTT 58.890 41.667 0.00 0.00 0.00 2.24
526 527 4.441634 GGTCATCAAAGCACGGTATCTACT 60.442 45.833 0.00 0.00 0.00 2.57
527 528 3.802685 GGTCATCAAAGCACGGTATCTAC 59.197 47.826 0.00 0.00 0.00 2.59
528 529 3.181469 GGGTCATCAAAGCACGGTATCTA 60.181 47.826 0.00 0.00 0.00 1.98
529 530 2.420129 GGGTCATCAAAGCACGGTATCT 60.420 50.000 0.00 0.00 0.00 1.98
530 531 1.940613 GGGTCATCAAAGCACGGTATC 59.059 52.381 0.00 0.00 0.00 2.24
531 532 1.742411 CGGGTCATCAAAGCACGGTAT 60.742 52.381 0.00 0.00 0.00 2.73
532 533 0.390603 CGGGTCATCAAAGCACGGTA 60.391 55.000 0.00 0.00 0.00 4.02
533 534 1.671054 CGGGTCATCAAAGCACGGT 60.671 57.895 0.00 0.00 0.00 4.83
534 535 1.361668 CTCGGGTCATCAAAGCACGG 61.362 60.000 0.00 0.00 0.00 4.94
535 536 0.389817 TCTCGGGTCATCAAAGCACG 60.390 55.000 0.00 0.00 0.00 5.34
536 537 1.734465 CTTCTCGGGTCATCAAAGCAC 59.266 52.381 0.00 0.00 0.00 4.40
537 538 1.623311 TCTTCTCGGGTCATCAAAGCA 59.377 47.619 0.00 0.00 0.00 3.91
538 539 2.386661 TCTTCTCGGGTCATCAAAGC 57.613 50.000 0.00 0.00 0.00 3.51
539 540 4.065088 TGTTTCTTCTCGGGTCATCAAAG 58.935 43.478 0.00 0.00 0.00 2.77
540 541 4.079980 TGTTTCTTCTCGGGTCATCAAA 57.920 40.909 0.00 0.00 0.00 2.69
541 542 3.762407 TGTTTCTTCTCGGGTCATCAA 57.238 42.857 0.00 0.00 0.00 2.57
542 543 3.762407 TTGTTTCTTCTCGGGTCATCA 57.238 42.857 0.00 0.00 0.00 3.07
543 544 4.003648 ACATTGTTTCTTCTCGGGTCATC 58.996 43.478 0.00 0.00 0.00 2.92
544 545 3.753272 CACATTGTTTCTTCTCGGGTCAT 59.247 43.478 0.00 0.00 0.00 3.06
545 546 3.138304 CACATTGTTTCTTCTCGGGTCA 58.862 45.455 0.00 0.00 0.00 4.02
546 547 2.095718 GCACATTGTTTCTTCTCGGGTC 60.096 50.000 0.00 0.00 0.00 4.46
547 548 1.880027 GCACATTGTTTCTTCTCGGGT 59.120 47.619 0.00 0.00 0.00 5.28
548 549 1.879380 TGCACATTGTTTCTTCTCGGG 59.121 47.619 0.00 0.00 0.00 5.14
549 550 3.189080 TCATGCACATTGTTTCTTCTCGG 59.811 43.478 0.00 0.00 0.00 4.63
550 551 4.408993 TCATGCACATTGTTTCTTCTCG 57.591 40.909 0.00 0.00 0.00 4.04
551 552 5.522456 TGTTCATGCACATTGTTTCTTCTC 58.478 37.500 0.00 0.00 0.00 2.87
552 553 5.518848 TGTTCATGCACATTGTTTCTTCT 57.481 34.783 0.00 0.00 0.00 2.85
553 554 7.891782 CATATGTTCATGCACATTGTTTCTTC 58.108 34.615 16.17 0.00 38.40 2.87
554 555 7.821595 CATATGTTCATGCACATTGTTTCTT 57.178 32.000 16.17 0.00 38.40 2.52
567 568 6.855836 ACTAGGTGTTTTGCATATGTTCATG 58.144 36.000 4.29 0.00 0.00 3.07
568 569 8.623903 CATACTAGGTGTTTTGCATATGTTCAT 58.376 33.333 4.29 0.00 0.00 2.57
569 570 7.415095 GCATACTAGGTGTTTTGCATATGTTCA 60.415 37.037 4.29 0.00 36.90 3.18
570 571 6.912591 GCATACTAGGTGTTTTGCATATGTTC 59.087 38.462 4.29 0.00 36.90 3.18
571 572 6.376864 TGCATACTAGGTGTTTTGCATATGTT 59.623 34.615 4.29 0.00 39.78 2.71
572 573 5.885352 TGCATACTAGGTGTTTTGCATATGT 59.115 36.000 4.29 0.00 39.78 2.29
573 574 6.375945 TGCATACTAGGTGTTTTGCATATG 57.624 37.500 0.00 0.00 39.78 1.78
574 575 7.587037 AATGCATACTAGGTGTTTTGCATAT 57.413 32.000 0.00 0.00 46.75 1.78
575 576 8.567104 CATAATGCATACTAGGTGTTTTGCATA 58.433 33.333 0.00 0.00 46.75 3.14
577 578 6.183360 CCATAATGCATACTAGGTGTTTTGCA 60.183 38.462 0.00 0.00 44.65 4.08
578 579 6.208644 CCATAATGCATACTAGGTGTTTTGC 58.791 40.000 0.00 0.00 37.21 3.68
579 580 6.545666 TCCCATAATGCATACTAGGTGTTTTG 59.454 38.462 0.00 0.00 0.00 2.44
580 581 6.668645 TCCCATAATGCATACTAGGTGTTTT 58.331 36.000 0.00 0.00 0.00 2.43
581 582 6.126478 ACTCCCATAATGCATACTAGGTGTTT 60.126 38.462 0.00 0.00 0.00 2.83
582 583 5.369699 ACTCCCATAATGCATACTAGGTGTT 59.630 40.000 0.00 0.00 0.00 3.32
583 584 4.907875 ACTCCCATAATGCATACTAGGTGT 59.092 41.667 0.00 3.74 0.00 4.16
584 585 5.489792 ACTCCCATAATGCATACTAGGTG 57.510 43.478 0.00 3.10 0.00 4.00
592 593 9.803507 CCATTGATATATACTCCCATAATGCAT 57.196 33.333 0.00 0.00 0.00 3.96
593 594 7.720957 GCCATTGATATATACTCCCATAATGCA 59.279 37.037 0.00 0.00 0.00 3.96
594 595 7.095060 CGCCATTGATATATACTCCCATAATGC 60.095 40.741 0.00 0.00 0.00 3.56
595 596 7.388776 CCGCCATTGATATATACTCCCATAATG 59.611 40.741 0.00 0.00 0.00 1.90
596 597 7.072454 ACCGCCATTGATATATACTCCCATAAT 59.928 37.037 0.00 0.00 0.00 1.28
597 598 6.385759 ACCGCCATTGATATATACTCCCATAA 59.614 38.462 0.00 0.00 0.00 1.90
598 599 5.903010 ACCGCCATTGATATATACTCCCATA 59.097 40.000 0.00 0.00 0.00 2.74
599 600 4.721776 ACCGCCATTGATATATACTCCCAT 59.278 41.667 0.00 0.00 0.00 4.00
600 601 4.101114 ACCGCCATTGATATATACTCCCA 58.899 43.478 0.00 0.00 0.00 4.37
601 602 4.755266 ACCGCCATTGATATATACTCCC 57.245 45.455 0.00 0.00 0.00 4.30
602 603 5.488341 ACAACCGCCATTGATATATACTCC 58.512 41.667 1.75 0.00 33.57 3.85
603 604 5.288712 CGACAACCGCCATTGATATATACTC 59.711 44.000 1.75 0.00 33.57 2.59
604 605 5.047590 TCGACAACCGCCATTGATATATACT 60.048 40.000 1.75 0.00 38.37 2.12
605 606 5.165676 TCGACAACCGCCATTGATATATAC 58.834 41.667 1.75 0.00 38.37 1.47
606 607 5.394224 TCGACAACCGCCATTGATATATA 57.606 39.130 1.75 0.00 38.37 0.86
607 608 4.265904 TCGACAACCGCCATTGATATAT 57.734 40.909 1.75 0.00 38.37 0.86
608 609 3.737032 TCGACAACCGCCATTGATATA 57.263 42.857 1.75 0.00 38.37 0.86
609 610 2.613026 TCGACAACCGCCATTGATAT 57.387 45.000 1.75 0.00 38.37 1.63
610 611 2.276201 CTTCGACAACCGCCATTGATA 58.724 47.619 1.75 0.00 38.37 2.15
611 612 1.086696 CTTCGACAACCGCCATTGAT 58.913 50.000 1.75 0.00 38.37 2.57
612 613 0.250124 ACTTCGACAACCGCCATTGA 60.250 50.000 1.75 0.00 38.37 2.57
613 614 0.591170 AACTTCGACAACCGCCATTG 59.409 50.000 0.00 0.00 38.37 2.82
614 615 0.872388 GAACTTCGACAACCGCCATT 59.128 50.000 0.00 0.00 38.37 3.16
615 616 0.250124 TGAACTTCGACAACCGCCAT 60.250 50.000 0.00 0.00 38.37 4.40
616 617 0.878523 CTGAACTTCGACAACCGCCA 60.879 55.000 0.00 0.00 38.37 5.69
617 618 0.599204 TCTGAACTTCGACAACCGCC 60.599 55.000 0.00 0.00 38.37 6.13
618 619 1.214367 TTCTGAACTTCGACAACCGC 58.786 50.000 0.00 0.00 38.37 5.68
619 620 4.211389 CAATTTCTGAACTTCGACAACCG 58.789 43.478 0.00 0.00 40.25 4.44
620 621 3.975035 GCAATTTCTGAACTTCGACAACC 59.025 43.478 0.00 0.00 0.00 3.77
621 622 4.848757 AGCAATTTCTGAACTTCGACAAC 58.151 39.130 0.00 0.00 0.00 3.32
622 623 6.260050 AGTTAGCAATTTCTGAACTTCGACAA 59.740 34.615 0.00 0.00 0.00 3.18
623 624 5.758296 AGTTAGCAATTTCTGAACTTCGACA 59.242 36.000 0.00 0.00 0.00 4.35
624 625 6.073765 TCAGTTAGCAATTTCTGAACTTCGAC 60.074 38.462 0.00 0.00 34.61 4.20
625 626 5.989168 TCAGTTAGCAATTTCTGAACTTCGA 59.011 36.000 0.00 0.00 34.61 3.71
626 627 6.074005 GTCAGTTAGCAATTTCTGAACTTCG 58.926 40.000 0.00 0.00 38.40 3.79
627 628 6.017109 TGGTCAGTTAGCAATTTCTGAACTTC 60.017 38.462 9.80 0.00 42.79 3.01
628 629 5.827797 TGGTCAGTTAGCAATTTCTGAACTT 59.172 36.000 9.80 0.00 42.79 2.66
629 630 5.239525 GTGGTCAGTTAGCAATTTCTGAACT 59.760 40.000 9.80 3.93 42.79 3.01
630 631 5.452777 GTGGTCAGTTAGCAATTTCTGAAC 58.547 41.667 0.00 0.00 42.70 3.18
631 632 4.213270 CGTGGTCAGTTAGCAATTTCTGAA 59.787 41.667 0.00 0.00 38.40 3.02
632 633 3.745975 CGTGGTCAGTTAGCAATTTCTGA 59.254 43.478 0.00 0.00 37.33 3.27
633 634 3.498397 ACGTGGTCAGTTAGCAATTTCTG 59.502 43.478 0.00 0.00 37.33 3.02
634 635 3.740115 ACGTGGTCAGTTAGCAATTTCT 58.260 40.909 0.00 0.00 37.33 2.52
635 636 4.483476 AACGTGGTCAGTTAGCAATTTC 57.517 40.909 0.00 0.00 37.33 2.17
636 637 4.336993 TGAAACGTGGTCAGTTAGCAATTT 59.663 37.500 0.00 0.00 37.33 1.82
637 638 3.880490 TGAAACGTGGTCAGTTAGCAATT 59.120 39.130 0.00 0.00 37.33 2.32
638 639 3.472652 TGAAACGTGGTCAGTTAGCAAT 58.527 40.909 0.00 0.00 37.33 3.56
639 640 2.907634 TGAAACGTGGTCAGTTAGCAA 58.092 42.857 0.00 0.00 37.33 3.91
640 641 2.605837 TGAAACGTGGTCAGTTAGCA 57.394 45.000 0.00 0.00 0.00 3.49
641 642 2.159627 CCATGAAACGTGGTCAGTTAGC 59.840 50.000 8.07 0.00 31.96 3.09
642 643 3.432252 GTCCATGAAACGTGGTCAGTTAG 59.568 47.826 8.07 0.00 37.96 2.34
643 644 3.395639 GTCCATGAAACGTGGTCAGTTA 58.604 45.455 8.07 0.00 37.96 2.24
644 645 2.218603 GTCCATGAAACGTGGTCAGTT 58.781 47.619 8.07 0.00 37.96 3.16
645 646 1.542547 GGTCCATGAAACGTGGTCAGT 60.543 52.381 8.07 0.00 37.96 3.41
646 647 1.156736 GGTCCATGAAACGTGGTCAG 58.843 55.000 8.07 1.75 37.96 3.51
647 648 0.470341 TGGTCCATGAAACGTGGTCA 59.530 50.000 9.39 4.79 37.96 4.02
648 649 1.265905 GTTGGTCCATGAAACGTGGTC 59.734 52.381 9.39 4.68 37.96 4.02
649 650 1.314730 GTTGGTCCATGAAACGTGGT 58.685 50.000 9.39 0.00 37.96 4.16
650 651 0.596082 GGTTGGTCCATGAAACGTGG 59.404 55.000 0.00 3.86 38.11 4.94
651 652 1.313772 TGGTTGGTCCATGAAACGTG 58.686 50.000 0.00 0.00 41.93 4.49
652 653 2.060050 TTGGTTGGTCCATGAAACGT 57.940 45.000 0.00 0.00 46.60 3.99
653 654 2.738135 GTTTGGTTGGTCCATGAAACG 58.262 47.619 0.00 0.00 46.60 3.60
654 655 2.544903 CCGTTTGGTTGGTCCATGAAAC 60.545 50.000 0.00 1.92 46.60 2.78
655 656 1.683917 CCGTTTGGTTGGTCCATGAAA 59.316 47.619 0.00 0.00 46.60 2.69
656 657 1.323412 CCGTTTGGTTGGTCCATGAA 58.677 50.000 0.00 0.00 46.60 2.57
657 658 1.175983 GCCGTTTGGTTGGTCCATGA 61.176 55.000 0.00 0.00 46.60 3.07
658 659 1.178534 AGCCGTTTGGTTGGTCCATG 61.179 55.000 0.00 0.00 46.60 3.66
659 660 0.893727 GAGCCGTTTGGTTGGTCCAT 60.894 55.000 0.00 0.00 46.60 3.41
660 661 1.527380 GAGCCGTTTGGTTGGTCCA 60.527 57.895 0.00 0.00 45.60 4.02
661 662 1.515521 CTGAGCCGTTTGGTTGGTCC 61.516 60.000 0.00 0.00 37.67 4.46
662 663 1.515521 CCTGAGCCGTTTGGTTGGTC 61.516 60.000 0.00 0.00 37.67 4.02
663 664 1.528309 CCTGAGCCGTTTGGTTGGT 60.528 57.895 0.00 0.00 37.67 3.67
664 665 2.919494 GCCTGAGCCGTTTGGTTGG 61.919 63.158 0.00 0.00 37.67 3.77
665 666 2.644992 GCCTGAGCCGTTTGGTTG 59.355 61.111 0.00 0.00 37.67 3.77
675 676 1.406539 CATGTGTTATTGGGCCTGAGC 59.593 52.381 4.53 0.00 38.76 4.26
676 677 2.424601 CACATGTGTTATTGGGCCTGAG 59.575 50.000 18.03 0.00 0.00 3.35
677 678 2.445427 CACATGTGTTATTGGGCCTGA 58.555 47.619 18.03 0.00 0.00 3.86
678 679 1.135024 GCACATGTGTTATTGGGCCTG 60.135 52.381 26.01 0.00 36.24 4.85
679 680 1.185315 GCACATGTGTTATTGGGCCT 58.815 50.000 26.01 0.00 36.24 5.19
680 681 0.179140 CGCACATGTGTTATTGGGCC 60.179 55.000 26.01 0.00 39.11 5.80
681 682 0.525761 ACGCACATGTGTTATTGGGC 59.474 50.000 26.01 8.95 38.91 5.36
682 683 2.985809 CAAACGCACATGTGTTATTGGG 59.014 45.455 26.01 10.57 46.75 4.12
683 684 2.408032 GCAAACGCACATGTGTTATTGG 59.592 45.455 26.01 15.91 46.75 3.16
684 685 3.048501 TGCAAACGCACATGTGTTATTG 58.951 40.909 26.01 24.48 46.75 1.90
685 686 3.243367 ACTGCAAACGCACATGTGTTATT 60.243 39.130 26.01 15.05 46.75 1.40
686 687 2.293122 ACTGCAAACGCACATGTGTTAT 59.707 40.909 26.01 9.96 46.75 1.89
687 688 1.673400 ACTGCAAACGCACATGTGTTA 59.327 42.857 26.01 5.40 46.75 2.41
689 690 0.455410 AACTGCAAACGCACATGTGT 59.545 45.000 26.01 5.37 41.05 3.72
690 691 1.122849 GAACTGCAAACGCACATGTG 58.877 50.000 21.83 21.83 35.03 3.21
691 692 0.737804 TGAACTGCAAACGCACATGT 59.262 45.000 0.00 0.00 35.03 3.21
692 693 1.268692 ACTGAACTGCAAACGCACATG 60.269 47.619 0.00 0.00 35.03 3.21
693 694 1.002468 GACTGAACTGCAAACGCACAT 60.002 47.619 0.00 0.00 35.03 3.21
694 695 0.376852 GACTGAACTGCAAACGCACA 59.623 50.000 0.00 0.00 35.03 4.57
695 696 0.317020 GGACTGAACTGCAAACGCAC 60.317 55.000 0.00 0.00 35.03 5.34
696 697 0.746204 TGGACTGAACTGCAAACGCA 60.746 50.000 0.00 0.00 37.92 5.24
697 698 0.593128 ATGGACTGAACTGCAAACGC 59.407 50.000 0.00 0.00 0.00 4.84
698 699 3.003689 AGAAATGGACTGAACTGCAAACG 59.996 43.478 0.00 0.00 0.00 3.60
699 700 4.574599 AGAAATGGACTGAACTGCAAAC 57.425 40.909 0.00 0.00 0.00 2.93
700 701 5.415701 GGATAGAAATGGACTGAACTGCAAA 59.584 40.000 0.00 0.00 0.00 3.68
701 702 4.943705 GGATAGAAATGGACTGAACTGCAA 59.056 41.667 0.00 0.00 0.00 4.08
702 703 4.019411 TGGATAGAAATGGACTGAACTGCA 60.019 41.667 0.00 0.00 0.00 4.41
703 704 4.517285 TGGATAGAAATGGACTGAACTGC 58.483 43.478 0.00 0.00 0.00 4.40
704 705 6.037940 CACATGGATAGAAATGGACTGAACTG 59.962 42.308 0.00 0.00 0.00 3.16
705 706 6.118170 CACATGGATAGAAATGGACTGAACT 58.882 40.000 0.00 0.00 0.00 3.01
706 707 5.220931 GCACATGGATAGAAATGGACTGAAC 60.221 44.000 0.00 0.00 0.00 3.18
707 708 4.883585 GCACATGGATAGAAATGGACTGAA 59.116 41.667 0.00 0.00 0.00 3.02
708 709 4.164796 AGCACATGGATAGAAATGGACTGA 59.835 41.667 0.00 0.00 0.00 3.41
709 710 4.458397 AGCACATGGATAGAAATGGACTG 58.542 43.478 0.00 0.00 0.00 3.51
710 711 4.785346 AGCACATGGATAGAAATGGACT 57.215 40.909 0.00 0.00 0.00 3.85
711 712 6.543831 ACTTTAGCACATGGATAGAAATGGAC 59.456 38.462 0.00 0.00 0.00 4.02
712 713 6.662755 ACTTTAGCACATGGATAGAAATGGA 58.337 36.000 0.00 0.00 0.00 3.41
713 714 6.543465 TGACTTTAGCACATGGATAGAAATGG 59.457 38.462 0.00 0.00 0.00 3.16
714 715 7.281774 ACTGACTTTAGCACATGGATAGAAATG 59.718 37.037 0.00 0.00 0.00 2.32
715 716 7.341805 ACTGACTTTAGCACATGGATAGAAAT 58.658 34.615 0.00 0.00 0.00 2.17
716 717 6.711277 ACTGACTTTAGCACATGGATAGAAA 58.289 36.000 0.00 0.00 0.00 2.52
717 718 6.070824 TGACTGACTTTAGCACATGGATAGAA 60.071 38.462 0.00 0.00 0.00 2.10
718 719 5.422012 TGACTGACTTTAGCACATGGATAGA 59.578 40.000 0.00 0.00 0.00 1.98
719 720 5.664457 TGACTGACTTTAGCACATGGATAG 58.336 41.667 0.00 0.00 0.00 2.08
720 721 5.395657 CCTGACTGACTTTAGCACATGGATA 60.396 44.000 0.00 0.00 0.00 2.59
721 722 4.511527 CTGACTGACTTTAGCACATGGAT 58.488 43.478 0.00 0.00 0.00 3.41
722 723 3.306989 CCTGACTGACTTTAGCACATGGA 60.307 47.826 0.00 0.00 0.00 3.41
723 724 3.005554 CCTGACTGACTTTAGCACATGG 58.994 50.000 0.00 0.00 0.00 3.66
724 725 2.417933 GCCTGACTGACTTTAGCACATG 59.582 50.000 0.00 0.00 0.00 3.21
725 726 2.616510 GGCCTGACTGACTTTAGCACAT 60.617 50.000 0.00 0.00 0.00 3.21
732 733 0.536006 GTGCAGGCCTGACTGACTTT 60.536 55.000 37.21 0.00 40.97 2.66
737 738 3.054503 GCTGTGCAGGCCTGACTG 61.055 66.667 37.21 29.24 41.41 3.51
754 755 0.392998 CATGGACCGAACTCCTTGGG 60.393 60.000 0.00 0.00 33.63 4.12
757 758 0.321653 GTGCATGGACCGAACTCCTT 60.322 55.000 5.98 0.00 0.00 3.36
759 760 1.745489 GGTGCATGGACCGAACTCC 60.745 63.158 21.48 0.00 0.00 3.85
781 782 1.067060 GCTTTTGTTTTCGGTCCTGCT 59.933 47.619 0.00 0.00 0.00 4.24
818 819 1.740043 CGTAAAATAAGACGGGCCGGT 60.740 52.381 31.78 16.97 35.43 5.28
829 830 7.062371 CACGGGAATTGAAAATGCGTAAAATAA 59.938 33.333 0.00 0.00 0.00 1.40
919 921 1.348775 GGGATGAGGTGGGAAGGAGG 61.349 65.000 0.00 0.00 0.00 4.30
921 923 1.689233 CGGGATGAGGTGGGAAGGA 60.689 63.158 0.00 0.00 0.00 3.36
922 924 2.746375 CCGGGATGAGGTGGGAAGG 61.746 68.421 0.00 0.00 0.00 3.46
924 926 3.407967 GCCGGGATGAGGTGGGAA 61.408 66.667 2.18 0.00 0.00 3.97
1082 1086 2.584261 AATCCTGTGCATCGCTCGCT 62.584 55.000 0.00 0.00 0.00 4.93
1083 1087 2.098842 GAATCCTGTGCATCGCTCGC 62.099 60.000 0.00 0.00 0.00 5.03
1084 1088 0.529337 AGAATCCTGTGCATCGCTCG 60.529 55.000 0.00 0.00 0.00 5.03
1085 1089 1.216122 GAGAATCCTGTGCATCGCTC 58.784 55.000 0.00 0.00 0.00 5.03
1389 1399 1.012841 GCTTCCTCTCTGGCGAATTG 58.987 55.000 0.00 0.00 35.26 2.32
1390 1400 0.615331 TGCTTCCTCTCTGGCGAATT 59.385 50.000 0.00 0.00 35.26 2.17
1562 1572 4.038763 ACAGTACGAACAATCCAGAACAGA 59.961 41.667 0.00 0.00 0.00 3.41
1605 1615 8.025243 TGCTTACATACTTTGCAAACTAGTAC 57.975 34.615 8.05 0.00 0.00 2.73
1607 1617 7.012894 TGTTGCTTACATACTTTGCAAACTAGT 59.987 33.333 8.05 7.67 43.72 2.57
1662 1713 4.178540 CCATGTCAATTCTGGCAATTCAC 58.821 43.478 0.00 0.00 41.46 3.18
1675 1726 6.436847 TGTATTTTCCATGTGACCATGTCAAT 59.563 34.615 0.00 0.00 44.49 2.57
1709 1760 6.594788 ACATTTTCTCAGGCAACATATGTT 57.405 33.333 15.47 15.47 39.12 2.71
1731 1782 2.450609 AAGTGGTGGTATGTGACGAC 57.549 50.000 0.00 0.00 36.11 4.34
1735 1786 4.901197 ACATGTAAGTGGTGGTATGTGA 57.099 40.909 0.00 0.00 0.00 3.58
1778 1829 7.721402 ACTCTATACAAGAATGCAGGTCTAAG 58.279 38.462 3.26 2.95 32.46 2.18
1794 1845 6.008331 ACTCACAGTACACCAACTCTATACA 58.992 40.000 0.00 0.00 0.00 2.29
1796 1847 5.105877 GCACTCACAGTACACCAACTCTATA 60.106 44.000 0.00 0.00 0.00 1.31
1800 1851 2.135933 GCACTCACAGTACACCAACTC 58.864 52.381 0.00 0.00 0.00 3.01
1817 1871 1.198637 GGACAGAGTGATTGCTTGCAC 59.801 52.381 0.00 0.00 35.30 4.57
1828 1882 0.673985 TGGTCGTCAAGGACAGAGTG 59.326 55.000 5.34 0.00 38.70 3.51
1829 1883 1.068741 GTTGGTCGTCAAGGACAGAGT 59.931 52.381 5.34 0.00 38.70 3.24
1830 1884 1.341531 AGTTGGTCGTCAAGGACAGAG 59.658 52.381 5.34 0.00 38.70 3.35
1831 1885 1.340248 GAGTTGGTCGTCAAGGACAGA 59.660 52.381 5.34 0.00 38.70 3.41
1832 1886 1.784525 GAGTTGGTCGTCAAGGACAG 58.215 55.000 5.34 0.00 38.70 3.51
1833 1887 0.031585 CGAGTTGGTCGTCAAGGACA 59.968 55.000 5.34 0.00 44.20 4.02
1892 1947 1.885887 GCATTTACCAGTGTTGCCTCA 59.114 47.619 0.00 0.00 0.00 3.86
1896 1951 2.791383 TGTGCATTTACCAGTGTTGC 57.209 45.000 0.00 0.00 0.00 4.17
1899 1962 2.029110 GCCAATGTGCATTTACCAGTGT 60.029 45.455 0.00 0.00 0.00 3.55
1905 1968 3.591196 TTGGAGCCAATGTGCATTTAC 57.409 42.857 0.00 0.00 0.00 2.01
1944 2007 7.064966 GCGTAGGCATAAACTTTAGGACTAAAA 59.935 37.037 9.80 0.00 39.62 1.52
1968 2031 1.227380 GTGAGATGCAGGGTAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
2016 2079 5.989249 TGCAATGCTACAATCAATACGATC 58.011 37.500 6.82 0.00 31.11 3.69
2083 2146 2.854963 TCATGGTGATAATGCTCCAGC 58.145 47.619 0.00 0.00 42.50 4.85
2084 2147 6.264744 AGAATTTCATGGTGATAATGCTCCAG 59.735 38.462 0.00 0.00 35.17 3.86
2151 2214 8.360390 AGAATAAAGTAAAGCAAACCCAGAAAG 58.640 33.333 0.00 0.00 0.00 2.62
2243 2311 4.024387 GTGCGTTGAAGTTAGATTGAACCA 60.024 41.667 0.00 0.00 0.00 3.67
2383 2451 5.845985 TCAACGCTCTCTTTAATGAACAG 57.154 39.130 0.00 0.00 0.00 3.16
2439 2507 2.075338 GTGAGCCTCTTTCTTCTGCAG 58.925 52.381 7.63 7.63 0.00 4.41
2505 2573 2.554032 AGTCTCGTTGGCAATTCTTTGG 59.446 45.455 1.92 0.00 33.22 3.28
2598 2666 9.787532 GCATAGAAAGCATCAAGTATGTTAAAA 57.212 29.630 0.00 0.00 37.93 1.52
3186 3257 3.318313 TCTCCTTCCAGGAAGAACACTT 58.682 45.455 28.56 0.00 45.28 3.16
3297 3371 4.511826 CAGGAACCTAATTCGGAATAGCAC 59.488 45.833 3.22 0.00 38.31 4.40
3436 3511 8.483307 AATGCCTGCTTAACAATAAAAGAATG 57.517 30.769 0.00 0.00 0.00 2.67
3531 3606 4.623932 TCCAGCAACATTACTGAGTTCT 57.376 40.909 0.00 0.00 35.90 3.01
3539 3614 3.679502 GGCAACAATTCCAGCAACATTAC 59.320 43.478 0.00 0.00 0.00 1.89
3675 3750 7.400439 AGTACAGAACTAGTGTCACATAGGTA 58.600 38.462 5.62 0.72 36.36 3.08
3701 3778 4.533707 ACCAGTGTAGCAGGCATGATATAT 59.466 41.667 0.62 0.00 28.40 0.86
3720 3797 7.984050 AGACTTCAGATAATTCACATGTACCAG 59.016 37.037 0.00 0.00 0.00 4.00
3723 3800 9.469807 CCTAGACTTCAGATAATTCACATGTAC 57.530 37.037 0.00 0.00 0.00 2.90
3728 3805 7.147828 CCAGACCTAGACTTCAGATAATTCACA 60.148 40.741 0.00 0.00 0.00 3.58
3830 3907 7.540055 GTCTCAAAAGCATTTCACAGGAATTAG 59.460 37.037 0.00 0.00 37.28 1.73
3870 3947 9.530633 GTCAAAGTGTATAAATACAGACCTAGG 57.469 37.037 7.41 7.41 43.32 3.02
3911 3988 3.963383 ACAAATTGAACCTGTGACGAC 57.037 42.857 0.00 0.00 0.00 4.34
3919 3996 6.015434 GGACACAAGGATAACAAATTGAACCT 60.015 38.462 0.00 0.00 0.00 3.50
3920 3997 6.156519 GGACACAAGGATAACAAATTGAACC 58.843 40.000 0.00 0.00 0.00 3.62
3941 4018 3.366052 ACAAATACCATCACCCTGGAC 57.634 47.619 0.00 0.00 39.73 4.02
4039 4494 5.106317 CCACACTAAGACGTGGCATTTTATT 60.106 40.000 0.00 0.00 45.77 1.40
4097 4552 0.327591 TGGCATGCCATGTGTCACTA 59.672 50.000 35.59 8.81 41.89 2.74
4141 4596 4.211389 CGAGGAAATTCGATAAAATGCCG 58.789 43.478 0.00 0.00 43.03 5.69
4263 4718 4.125703 GGGCAACATTGAAACATCAAACA 58.874 39.130 0.00 0.00 39.74 2.83
4370 4825 1.204704 TGTGGGCTCATACTCTTGTCG 59.795 52.381 0.00 0.00 0.00 4.35
4497 4952 1.423541 TCAAGCTTGCCCCTACTTTGA 59.576 47.619 21.99 0.00 0.00 2.69
4514 4969 7.594758 GCACAAAAAGATAGTTGCATAAGTCAA 59.405 33.333 0.00 0.00 0.00 3.18
4646 5101 7.344913 AGAAAGAGTACCTAGGTTTCGAGATA 58.655 38.462 22.11 0.00 33.29 1.98
4671 5126 5.360999 ACAGCATTGACTAGCACTACAGATA 59.639 40.000 0.00 0.00 0.00 1.98
4702 5157 3.034635 CAGGCACAGGGAGTTAGATACT 58.965 50.000 0.00 0.00 40.71 2.12
4709 5164 2.375174 TCATTTACAGGCACAGGGAGTT 59.625 45.455 0.00 0.00 0.00 3.01
4715 5170 5.064452 GTCAGATCTTCATTTACAGGCACAG 59.936 44.000 0.00 0.00 0.00 3.66
4719 5174 6.578023 AGTAGTCAGATCTTCATTTACAGGC 58.422 40.000 0.00 0.00 0.00 4.85
4731 5186 3.580458 ACACCAAGCAAGTAGTCAGATCT 59.420 43.478 0.00 0.00 0.00 2.75
4751 5206 8.818622 AGATAATATACTAATAGGCACCGACA 57.181 34.615 0.00 0.00 0.00 4.35
4775 5230 7.807977 ACAGCATATGGTTCCATACTTTTAG 57.192 36.000 12.94 5.41 32.57 1.85
4776 5231 8.588290 AAACAGCATATGGTTCCATACTTTTA 57.412 30.769 12.94 0.00 31.24 1.52
4804 5259 4.023963 GCCAAGAACAAGGAAACAGTAGAC 60.024 45.833 0.00 0.00 0.00 2.59
4854 5319 0.321671 ACAGATGTGTCGTCCCAAGG 59.678 55.000 0.00 0.00 26.76 3.61
4858 5323 3.606886 ACAACAGATGTGTCGTCCC 57.393 52.632 0.00 0.00 41.93 4.46
4946 5411 1.153647 CATTGGCGACGGCAGTAGA 60.154 57.895 23.73 10.12 42.47 2.59
4985 5450 1.687368 GGCATTCAGGAGGGAAAGCAT 60.687 52.381 5.64 0.00 41.79 3.79
5025 5490 0.776080 TTTGGGGCTCCCTTTCCTCT 60.776 55.000 0.00 0.00 45.70 3.69
5026 5491 0.323816 CTTTGGGGCTCCCTTTCCTC 60.324 60.000 0.00 0.00 45.70 3.71
5029 5494 4.442038 CCTTTGGGGCTCCCTTTC 57.558 61.111 0.00 0.00 45.70 2.62
5085 5555 3.996150 ACATGTGCTTTCTGAAACAGG 57.004 42.857 0.00 1.52 31.51 4.00
5118 5588 2.036992 ACAAGGAGACTGTTCTCTGCTG 59.963 50.000 1.86 0.00 46.80 4.41
5119 5589 2.298729 GACAAGGAGACTGTTCTCTGCT 59.701 50.000 1.86 0.00 46.80 4.24
5167 5638 8.851960 TGATCTCAACGTATGACAATACTTAC 57.148 34.615 0.00 0.00 37.16 2.34
5178 8847 5.255710 AGGACTCTTGATCTCAACGTATG 57.744 43.478 0.00 0.00 0.00 2.39
5230 8900 2.160822 TGCTGAGAAGAAGAGTGTGC 57.839 50.000 0.00 0.00 0.00 4.57
5269 8947 9.097257 GATATACTCCAACCTACGAGTAGTATC 57.903 40.741 9.15 0.00 43.06 2.24
5322 9000 2.603953 GTGTCTCTACGTAGGTTTGGC 58.396 52.381 22.01 11.88 0.00 4.52
5326 9004 2.027745 TCTCGGTGTCTCTACGTAGGTT 60.028 50.000 22.01 0.00 0.00 3.50
5336 9014 2.008329 ACGTCTGTATCTCGGTGTCTC 58.992 52.381 0.00 0.00 0.00 3.36
5343 9021 3.730895 CGCCTACGTCTGTATCTCG 57.269 57.895 0.00 0.00 33.53 4.04
5418 9155 1.153369 CTCCCTGCCACCATGTACG 60.153 63.158 0.00 0.00 0.00 3.67
5459 9196 1.963464 TACCTTTCATCGGCGTCCCC 61.963 60.000 6.85 0.00 0.00 4.81
5534 9271 9.130661 CAGCCTAGCTATATACAGTAGATGAAT 57.869 37.037 0.00 0.00 36.40 2.57
5535 9272 7.067615 GCAGCCTAGCTATATACAGTAGATGAA 59.932 40.741 0.00 0.00 36.40 2.57
5537 9274 6.545666 AGCAGCCTAGCTATATACAGTAGATG 59.454 42.308 0.00 0.00 44.50 2.90
5538 9275 6.668645 AGCAGCCTAGCTATATACAGTAGAT 58.331 40.000 0.00 0.00 44.50 1.98
5539 9276 6.068461 AGCAGCCTAGCTATATACAGTAGA 57.932 41.667 0.00 0.00 44.50 2.59
5561 9304 4.213694 CGCCATAGCTCCGTATAGGTATAG 59.786 50.000 0.00 0.00 37.93 1.31
5562 9305 4.132336 CGCCATAGCTCCGTATAGGTATA 58.868 47.826 0.00 0.00 37.93 1.47
5563 9306 2.950309 CGCCATAGCTCCGTATAGGTAT 59.050 50.000 0.00 0.00 40.02 2.73
5564 9307 2.026915 TCGCCATAGCTCCGTATAGGTA 60.027 50.000 0.00 0.00 41.99 3.08
5565 9308 1.174783 CGCCATAGCTCCGTATAGGT 58.825 55.000 0.00 0.00 41.99 3.08
5566 9309 1.460504 TCGCCATAGCTCCGTATAGG 58.539 55.000 0.00 0.00 42.97 2.57
5578 9321 0.035317 GCCACTGATCCATCGCCATA 59.965 55.000 0.00 0.00 0.00 2.74
5659 9420 4.289101 TGACCTGACCCGGACCGA 62.289 66.667 17.49 0.00 0.00 4.69
5671 9432 1.454539 CTGGGAAAACCGGTGACCT 59.545 57.895 8.52 0.00 44.64 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.